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We need testing around ploidy #94

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LiterallyUniqueLogin opened this issue Jun 30, 2020 · 1 comment
Open

We need testing around ploidy #94

LiterallyUniqueLogin opened this issue Jun 30, 2020 · 1 comment

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@LiterallyUniqueLogin
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Which tools can handle haploid data? (GangSTR is one)
Are any of these tools not human specific and can handle ploidy >2?

For those cases we should add test cases to confirm our tools don't crash so we have issues like #89 crop up.
@gymreklab
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HipSTR has an option --haploid-chrs to specify a chromosome as haploid. ExpansionHunter has an --sex option which I assume is used for ploidy of sex chromosomes. Agree we should add at least haploid/diploid example data files and to tests. I am not aware of any of these outputting ploidy >2.

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@LiterallyUniqueLogin @gymreklab