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generate str_info_file #121

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sy8645 opened this issue Feb 14, 2023 · 0 comments

sy8645 commented Feb 14, 2023

Hi team,

Thanks for your time.

I'm using the GangSTR and dumpSTR tools on a set of WES data profiling tandem repeats from short reads. I have encountered some questions:

I want to use the str_info_generator script to generate a motif threshold file, but not sure how to prepare the files of

--disease', type=str, help='A file in bed format containing thresholds for high priority regions that need to be overwritten (Priority 4)'

--population', type=str, help='A file in bed format containing thresholds for low priority regions that need to be overwritten (Priority 2)'

--population-pad', type=int, default=0, help='Increasing the thresholds in population bed by this amount to avoid false positives.'

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