README.md

INDRA CoGEx

INDRA CoGEx (Context Graph Extension) is an automatically assembled biomedical knowledge graph which integrates causal mechanisms from INDRA with non-causal contextual relations including properties, ontology, and data.

Installation

Install the indra_cogex package with:

$ git clone https://github.com/bgyori/indra_cogex
$ cd indra_cogex
$ pip install -e .

Build

Build the graph then bulk import into Neo4j with:

$ python -m indra_cogex.sources
$ sh import.sh

Funding

The development of this project is funded under the DARPA Young Faculty Award (ARO grant W911NF2010255).