updateData.yml

name: Update AOP models

on:
  workflow_dispatch:
  schedule:
    - cron: "0 7 13 * *"
  push:
    paths:
      - '*.groovy'

jobs:
  bioschemas:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4
        with:
          submodules: true
          fetch-depth: 0

      - name: Install groovy
        run: sudo apt install groovy

      - name: Extract Bioschemas
        run: |
          curl -H "Accept: text/csv" --data-urlencode query@sparql/aops.rq -G https://aopwiki.rdf.bigcat-bioinformatics.org/sparql -o aops.csv
          groovy createModels.groovy | tee aops.ttl
          curl -H "Accept: text/csv" --data-urlencode query@sparql/kers.rq -G https://aopwiki.rdf.bigcat-bioinformatics.org/sparql -o kers.csv
          groovy createRelationships.groovy | tee aopwiki-relationships.ttl

      - name: Commit Turtle
        run: |
          git config --global user.name 'GitHub Action'
          git config --global user.email 'action@github.com'
          git add *.ttl
          if git diff --exit-code --staged; then
              echo "No changes"
          else
              git commit -m 'Extracted new AOP models as Turtle'
              git push
          fi