diff --git a/QoRTs-vignette.pdf b/QoRTs-vignette.pdf
index ab5a89c..c397395 100644
Binary files a/QoRTs-vignette.pdf and b/QoRTs-vignette.pdf differ
diff --git a/QoRTs.jar b/QoRTs.jar
index c93bf72..0a960e9 100644
Binary files a/QoRTs.jar and b/QoRTs.jar differ
diff --git a/QoRTs_1.3.0.tar.gz b/QoRTs_1.3.0.tar.gz
new file mode 100644
index 0000000..816b290
Binary files /dev/null and b/QoRTs_1.3.0.tar.gz differ
diff --git a/README.md b/README.md
index 1d01656..63178a3 100644
--- a/README.md
+++ b/README.md
@@ -1,5 +1,5 @@
-# QoRTs v1.2.42
-(Compiled Fri Jun  2 12:23:55 EDT 2017)
+# QoRTs v1.3.0
+(Compiled Fri Oct 20 11:56:37 EDT 2017)
 
 The [QoRTs software package](http://hartleys.github.io/QoRTs/) is a fast, efficient, and portable 
 multifunction toolkit designed to assist in
diff --git a/example-walkthrough.pdf b/example-walkthrough.pdf
index 08bf239..0db6641 100644
Binary files a/example-walkthrough.pdf and b/example-walkthrough.pdf differ
diff --git a/src/HartleyUtils/.cache-main b/src/HartleyUtils/.cache-main
index 0f85539..19d3eee 100644
--- a/src/HartleyUtils/.cache-main
+++ b/src/HartleyUtils/.cache-main
@@ -27,7 +27,7 @@ name hashing:
 1 items
 0 -> false
 products:
-1309 items
+1313 items
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\addNovelSplices.scala -> C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$1.class
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\addNovelSplices.scala -> C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$10.class
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\addNovelSplices.scala -> C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$11.class
@@ -87,9 +87,14 @@ C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\bamT
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\bamToWiggle.scala -> C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$Chrom$$anonfun$countBlocks$2.class
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\bamToWiggle.scala -> C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$Chrom$.class
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\bamToWiggle.scala -> C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$Chrom.class
-C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\bamToWiggle.scala -> C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$QcBamToWig$$anonfun$writeOutput$1.class
-C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\bamToWiggle.scala -> C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$QcBamToWig$$anonfun$writeOutput$2.class
+C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\bamToWiggle.scala -> C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$QcBamToWig$$anonfun$writeOutput$5.class
+C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\bamToWiggle.scala -> C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$QcBamToWig$$anonfun$writeOutput$6.class
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\bamToWiggle.scala -> C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$QcBamToWig.class
+C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\bamToWiggle.scala -> C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$QcBamToWigReservoirSample$$anonfun$writeOutput$1.class
+C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\bamToWiggle.scala -> C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$QcBamToWigReservoirSample$$anonfun$writeOutput$2.class
+C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\bamToWiggle.scala -> C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$QcBamToWigReservoirSample$$anonfun$writeOutput$3.class
+C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\bamToWiggle.scala -> C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$QcBamToWigReservoirSample$$anonfun$writeOutput$4.class
+C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\bamToWiggle.scala -> C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$QcBamToWigReservoirSample.class
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\bamToWiggle.scala -> C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$wiggleMaker.class
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\bamToWiggle.scala -> C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle.class
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\convertSoftToHardClipping.scala -> C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\convertSoftToHardClipping$$anonfun$run$1$$anonfun$1.class
@@ -500,16 +505,15 @@ C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\fileUtils.
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\fileUtils.scala -> C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\fileUtils.class
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\genomicAnnoUtils.scala -> C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$.class
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\genomicAnnoUtils.scala -> C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$EfficientGenomeSeqContainer.class
-C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\genomicAnnoUtils.scala -> C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$EfficientGenomeSeqContainer_FAList$$anonfun$4.class
-C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\genomicAnnoUtils.scala -> C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$EfficientGenomeSeqContainer_FAList$$anonfun$switchToChrom$5.class
+C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\genomicAnnoUtils.scala -> C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$EfficientGenomeSeqContainer_FAList$$anonfun$5.class
+C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\genomicAnnoUtils.scala -> C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$EfficientGenomeSeqContainer_FAList$$anonfun$switchToChrom$3.class
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\genomicAnnoUtils.scala -> C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$EfficientGenomeSeqContainer_FAList.class
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\genomicAnnoUtils.scala -> C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$EfficientGenomeSeqContainer_MFA$$anonfun$1.class
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\genomicAnnoUtils.scala -> C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$EfficientGenomeSeqContainer_MFA$$anonfun$2.class
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\genomicAnnoUtils.scala -> C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$EfficientGenomeSeqContainer_MFA$$anonfun$3.class
+C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\genomicAnnoUtils.scala -> C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$EfficientGenomeSeqContainer_MFA$$anonfun$4.class
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\genomicAnnoUtils.scala -> C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$EfficientGenomeSeqContainer_MFA$$anonfun$switchToChrom$1.class
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\genomicAnnoUtils.scala -> C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$EfficientGenomeSeqContainer_MFA$$anonfun$switchToChrom$2.class
-C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\genomicAnnoUtils.scala -> C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$EfficientGenomeSeqContainer_MFA$$anonfun$switchToChrom$3.class
-C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\genomicAnnoUtils.scala -> C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$EfficientGenomeSeqContainer_MFA$$anonfun$switchToChrom$4.class
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\genomicAnnoUtils.scala -> C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$EfficientGenomeSeqContainer_MFA.class
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\genomicAnnoUtils.scala -> C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$GenomicArrayOfSets$$anonfun$printGenomicArrayToFile$1.class
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\genomicAnnoUtils.scala -> C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$GenomicArrayOfSets$$anonfun$printGenomicArrayToFile$2.class
@@ -1978,7 +1982,7 @@ inheritance internal dependencies:
 inheritance external dependencies:
 0 items
 class names:
-1309 items
+1313 items
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\addNovelSplices.scala -> fileConversionUtils.addNovelSplices
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\addNovelSplices.scala -> fileConversionUtils.addNovelSplices$
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\addNovelSplices.scala -> fileConversionUtils.addNovelSplices$$anonfun$1
@@ -2040,8 +2044,13 @@ C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\bamT
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\bamToWiggle.scala -> fileConversionUtils.bamToWiggle$Chrom$$anonfun$countBlocks$1
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\bamToWiggle.scala -> fileConversionUtils.bamToWiggle$Chrom$$anonfun$countBlocks$2
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\bamToWiggle.scala -> fileConversionUtils.bamToWiggle$QcBamToWig
-C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\bamToWiggle.scala -> fileConversionUtils.bamToWiggle$QcBamToWig$$anonfun$writeOutput$1
-C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\bamToWiggle.scala -> fileConversionUtils.bamToWiggle$QcBamToWig$$anonfun$writeOutput$2
+C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\bamToWiggle.scala -> fileConversionUtils.bamToWiggle$QcBamToWig$$anonfun$writeOutput$5
+C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\bamToWiggle.scala -> fileConversionUtils.bamToWiggle$QcBamToWig$$anonfun$writeOutput$6
+C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\bamToWiggle.scala -> fileConversionUtils.bamToWiggle$QcBamToWigReservoirSample
+C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\bamToWiggle.scala -> fileConversionUtils.bamToWiggle$QcBamToWigReservoirSample$$anonfun$writeOutput$1
+C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\bamToWiggle.scala -> fileConversionUtils.bamToWiggle$QcBamToWigReservoirSample$$anonfun$writeOutput$2
+C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\bamToWiggle.scala -> fileConversionUtils.bamToWiggle$QcBamToWigReservoirSample$$anonfun$writeOutput$3
+C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\bamToWiggle.scala -> fileConversionUtils.bamToWiggle$QcBamToWigReservoirSample$$anonfun$writeOutput$4
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\bamToWiggle.scala -> fileConversionUtils.bamToWiggle$wiggleMaker
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\convertSoftToHardClipping.scala -> fileConversionUtils.convertSoftToHardClipping
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\convertSoftToHardClipping.scala -> fileConversionUtils.convertSoftToHardClipping$
@@ -2453,16 +2462,15 @@ C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\genomicAnn
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\genomicAnnoUtils.scala -> internalUtils.genomicAnnoUtils$
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\genomicAnnoUtils.scala -> internalUtils.genomicAnnoUtils$EfficientGenomeSeqContainer
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\genomicAnnoUtils.scala -> internalUtils.genomicAnnoUtils$EfficientGenomeSeqContainer_FAList
-C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\genomicAnnoUtils.scala -> internalUtils.genomicAnnoUtils$EfficientGenomeSeqContainer_FAList$$anonfun$4
-C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\genomicAnnoUtils.scala -> internalUtils.genomicAnnoUtils$EfficientGenomeSeqContainer_FAList$$anonfun$switchToChrom$5
+C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\genomicAnnoUtils.scala -> internalUtils.genomicAnnoUtils$EfficientGenomeSeqContainer_FAList$$anonfun$5
+C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\genomicAnnoUtils.scala -> internalUtils.genomicAnnoUtils$EfficientGenomeSeqContainer_FAList$$anonfun$switchToChrom$3
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\genomicAnnoUtils.scala -> internalUtils.genomicAnnoUtils$EfficientGenomeSeqContainer_MFA
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\genomicAnnoUtils.scala -> internalUtils.genomicAnnoUtils$EfficientGenomeSeqContainer_MFA$$anonfun$1
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\genomicAnnoUtils.scala -> internalUtils.genomicAnnoUtils$EfficientGenomeSeqContainer_MFA$$anonfun$2
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\genomicAnnoUtils.scala -> internalUtils.genomicAnnoUtils$EfficientGenomeSeqContainer_MFA$$anonfun$3
+C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\genomicAnnoUtils.scala -> internalUtils.genomicAnnoUtils$EfficientGenomeSeqContainer_MFA$$anonfun$4
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\genomicAnnoUtils.scala -> internalUtils.genomicAnnoUtils$EfficientGenomeSeqContainer_MFA$$anonfun$switchToChrom$1
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\genomicAnnoUtils.scala -> internalUtils.genomicAnnoUtils$EfficientGenomeSeqContainer_MFA$$anonfun$switchToChrom$2
-C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\genomicAnnoUtils.scala -> internalUtils.genomicAnnoUtils$EfficientGenomeSeqContainer_MFA$$anonfun$switchToChrom$3
-C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\genomicAnnoUtils.scala -> internalUtils.genomicAnnoUtils$EfficientGenomeSeqContainer_MFA$$anonfun$switchToChrom$4
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\genomicAnnoUtils.scala -> internalUtils.genomicAnnoUtils$GenomicArrayOfSets
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\genomicAnnoUtils.scala -> internalUtils.genomicAnnoUtils$GenomicArrayOfSets$
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\genomicAnnoUtils.scala -> internalUtils.genomicAnnoUtils$GenomicArrayOfSets$$anonfun$printGenomicArrayToFile$1
@@ -3291,71 +3299,76 @@ C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\runner\runner.scala -> r
 used names:
 0 items
 product stamps:
-1309 items
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$1.class -> lastModified(1492098055978)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$10.class -> lastModified(1492098055982)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$11.class -> lastModified(1492098055985)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$12$$anonfun$13.class -> lastModified(1492098055992)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$12.class -> lastModified(1492098055989)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$14.class -> lastModified(1492098055996)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$16.class -> lastModified(1492098055999)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$17.class -> lastModified(1492098056003)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$18.class -> lastModified(1492098056006)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$19.class -> lastModified(1492098056009)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$2.class -> lastModified(1492098056014)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$3.class -> lastModified(1492098056017)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$4.class -> lastModified(1492098056020)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$5.class -> lastModified(1492098056023)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$6$$anonfun$apply$1.class -> lastModified(1492098056029)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$6$$anonfun$apply$2.class -> lastModified(1492098056033)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$6$$anonfun$apply$3.class -> lastModified(1492098056036)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$6$$anonfun$apply$4.class -> lastModified(1492098056039)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$6.class -> lastModified(1492098056026)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$7.class -> lastModified(1492098056042)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$8.class -> lastModified(1492098056045)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$9.class -> lastModified(1492098056048)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$buildGenomicArrayOfSets_fromGtf$1.class -> lastModified(1492098056053)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$makeJunctionCountsWithNovel$1.class -> lastModified(1492098056061)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$makeJunctionCountsWithNovel$2.class -> lastModified(1492098056064)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$makeJunctionCountsWithNovel$3.class -> lastModified(1492098056068)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$makeJunctionCountsWithNovel$4.class -> lastModified(1492098056071)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$makeOrphanJunctionCounts$1.class -> lastModified(1492098056074)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$makeOrphanJunctionCounts$2.class -> lastModified(1492098056078)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$mergeNovelHelper$1$$anonfun$apply$mcVI$sp$1.class -> lastModified(1492098056084)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$mergeNovelHelper$1.class -> lastModified(1492098056081)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$mergeNovelHelper$10$$anonfun$apply$6.class -> lastModified(1492098056089)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$mergeNovelHelper$10.class -> lastModified(1492098056087)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$mergeNovelHelper$11.class -> lastModified(1492098056092)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$mergeNovelHelper$2.class -> lastModified(1492098056096)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$mergeNovelHelper$3.class -> lastModified(1492098056098)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$mergeNovelHelper$4.class -> lastModified(1492098056101)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$mergeNovelHelper$5$$anonfun$15.class -> lastModified(1492098056106)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$mergeNovelHelper$5.class -> lastModified(1492098056104)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$mergeNovelHelper$6.class -> lastModified(1492098056109)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$mergeNovelHelper$7.class -> lastModified(1492098056111)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$mergeNovelHelper$8$$anonfun$apply$5.class -> lastModified(1492098056117)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$mergeNovelHelper$8.class -> lastModified(1492098056114)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$mergeNovelHelper$9.class -> lastModified(1492098056119)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$.class -> lastModified(1492098055975)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$mergeNovelSplices.class -> lastModified(1492098056123)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices.class -> lastModified(1492098055967)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$$anonfun$genChrom$1.class -> lastModified(1492098056138)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$$anonfun$getOverlappedPairBlocks$1.class -> lastModified(1492098056142)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$$anonfun$getReadBlocks$1.class -> lastModified(1492098056144)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$$anonfun$run$1.class -> lastModified(1492098056148)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$$anonfun$runOnFile2$1.class -> lastModified(1492098056151)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$$anonfun$runOnFile2$2.class -> lastModified(1492098056155)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$$anonfun$writeChrom$1.class -> lastModified(1492098056158)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$.class -> lastModified(1492098056133)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$Chrom$$anonfun$countBlocks$1.class -> lastModified(1492098056169)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$Chrom$$anonfun$countBlocks$2.class -> lastModified(1492098056172)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$Chrom$.class -> lastModified(1492098056166)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$Chrom.class -> lastModified(1492098056162)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$QcBamToWig$$anonfun$writeOutput$1.class -> lastModified(1492098056179)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$QcBamToWig$$anonfun$writeOutput$2.class -> lastModified(1492098056182)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$QcBamToWig.class -> lastModified(1492098056176)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$wiggleMaker.class -> lastModified(1492098056185)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle.class -> lastModified(1492098056127)
+1313 items
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$1.class -> lastModified(1508511148983)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$10.class -> lastModified(1508511148988)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$11.class -> lastModified(1508511148993)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$12$$anonfun$13.class -> lastModified(1508511149012)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$12.class -> lastModified(1508511149005)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$14.class -> lastModified(1508511149017)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$16.class -> lastModified(1508511149073)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$17.class -> lastModified(1508511149085)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$18.class -> lastModified(1508511149089)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$19.class -> lastModified(1508511149092)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$2.class -> lastModified(1508511149097)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$3.class -> lastModified(1508511149101)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$4.class -> lastModified(1508511149109)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$5.class -> lastModified(1508511149115)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$6$$anonfun$apply$1.class -> lastModified(1508511149130)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$6$$anonfun$apply$2.class -> lastModified(1508511149134)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$6$$anonfun$apply$3.class -> lastModified(1508511149138)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$6$$anonfun$apply$4.class -> lastModified(1508511149141)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$6.class -> lastModified(1508511149121)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$7.class -> lastModified(1508511149144)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$8.class -> lastModified(1508511149148)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$9.class -> lastModified(1508511149156)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$buildGenomicArrayOfSets_fromGtf$1.class -> lastModified(1508511149161)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$makeJunctionCountsWithNovel$1.class -> lastModified(1508511149165)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$makeJunctionCountsWithNovel$2.class -> lastModified(1508511149169)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$makeJunctionCountsWithNovel$3.class -> lastModified(1508511149175)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$makeJunctionCountsWithNovel$4.class -> lastModified(1508511149183)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$makeOrphanJunctionCounts$1.class -> lastModified(1508511149191)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$makeOrphanJunctionCounts$2.class -> lastModified(1508511149198)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$mergeNovelHelper$1$$anonfun$apply$mcVI$sp$1.class -> lastModified(1508511149210)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$mergeNovelHelper$1.class -> lastModified(1508511149204)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$mergeNovelHelper$10$$anonfun$apply$6.class -> lastModified(1508511149219)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$mergeNovelHelper$10.class -> lastModified(1508511149215)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$mergeNovelHelper$11.class -> lastModified(1508511149226)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$mergeNovelHelper$2.class -> lastModified(1508511149232)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$mergeNovelHelper$3.class -> lastModified(1508511149238)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$mergeNovelHelper$4.class -> lastModified(1508511149243)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$mergeNovelHelper$5$$anonfun$15.class -> lastModified(1508511149256)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$mergeNovelHelper$5.class -> lastModified(1508511149250)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$mergeNovelHelper$6.class -> lastModified(1508511149260)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$mergeNovelHelper$7.class -> lastModified(1508511149265)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$mergeNovelHelper$8$$anonfun$apply$5.class -> lastModified(1508511149280)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$mergeNovelHelper$8.class -> lastModified(1508511149272)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$$anonfun$mergeNovelHelper$9.class -> lastModified(1508511149285)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$.class -> lastModified(1508511148965)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices$mergeNovelSplices.class -> lastModified(1508511149297)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\addNovelSplices.class -> lastModified(1508511148819)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$$anonfun$genChrom$1.class -> lastModified(1508511291592)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$$anonfun$getOverlappedPairBlocks$1.class -> lastModified(1508511291596)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$$anonfun$getReadBlocks$1.class -> lastModified(1508511291599)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$$anonfun$run$1.class -> lastModified(1508511291603)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$$anonfun$runOnFile2$1.class -> lastModified(1508511291607)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$$anonfun$runOnFile2$2.class -> lastModified(1508511291612)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$$anonfun$writeChrom$1.class -> lastModified(1508511291616)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$.class -> lastModified(1508511291583)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$Chrom$$anonfun$countBlocks$1.class -> lastModified(1508511291634)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$Chrom$$anonfun$countBlocks$2.class -> lastModified(1508511291639)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$Chrom$.class -> lastModified(1508511291621)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$Chrom.class -> lastModified(1508511291630)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$QcBamToWig$$anonfun$writeOutput$5.class -> lastModified(1508511291653)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$QcBamToWig$$anonfun$writeOutput$6.class -> lastModified(1508511291657)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$QcBamToWig.class -> lastModified(1508511291648)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$QcBamToWigReservoirSample$$anonfun$writeOutput$1.class -> lastModified(1508511291678)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$QcBamToWigReservoirSample$$anonfun$writeOutput$2.class -> lastModified(1508511291686)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$QcBamToWigReservoirSample$$anonfun$writeOutput$3.class -> lastModified(1508511291692)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$QcBamToWigReservoirSample$$anonfun$writeOutput$4.class -> lastModified(1508511291698)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$QcBamToWigReservoirSample.class -> lastModified(1508511291668)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle$wiggleMaker.class -> lastModified(1508511291706)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\bamToWiggle.class -> lastModified(1508511291569)
 C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\convertSoftToHardClipping$$anonfun$run$1$$anonfun$1.class -> lastModified(1492098056323)
 C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\convertSoftToHardClipping$$anonfun$run$1$$anonfun$apply$1.class -> lastModified(1492098056325)
 C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\convertSoftToHardClipping$$anonfun$run$1$$anonfun$apply$2.class -> lastModified(1492098056328)
@@ -3546,36 +3559,36 @@ C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\mergeSpliceBed$
 C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\mergeSpliceBed$.class -> lastModified(1492098056880)
 C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\mergeSpliceBed$merger.class -> lastModified(1492098056934)
 C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\mergeSpliceBed.class -> lastModified(1492098056875)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$1.class -> lastModified(1492098056948)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$10.class -> lastModified(1492098056952)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$2.class -> lastModified(1492098056955)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$3.class -> lastModified(1492098056958)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$4.class -> lastModified(1492098056961)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$5$$anonfun$6.class -> lastModified(1492098056970)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$5.class -> lastModified(1492098056967)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$7.class -> lastModified(1492098056974)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$8$$anonfun$9.class -> lastModified(1492098056981)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$8.class -> lastModified(1492098056979)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$buildFeatures2$1$$anonfun$apply$6.class -> lastModified(1492098056992)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$buildFeatures2$1.class -> lastModified(1492098056984)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$buildGeneSets$1.class -> lastModified(1492098056999)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$buildGeneSets$2$$anonfun$apply$4.class -> lastModified(1492098057012)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$buildGeneSets$2$$anonfun$apply$5.class -> lastModified(1492098057014)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$buildGeneSets$2.class -> lastModified(1492098057009)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$buildGenomicArrayOfSets_Tx_and_Map$1.class -> lastModified(1492098057018)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$buildSpliceJunctionMap$1.class -> lastModified(1492098057020)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$buildSpliceJunctionMap$2$$anonfun$apply$1.class -> lastModified(1492098057025)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$buildSpliceJunctionMap$2$$anonfun$apply$2$$anonfun$apply$3.class -> lastModified(1492098057029)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$buildSpliceJunctionMap$2$$anonfun$apply$2.class -> lastModified(1492098057027)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$buildSpliceJunctionMap$2.class -> lastModified(1492098057022)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$buildTxCdsSpanMap$1.class -> lastModified(1492098057032)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$getFlatGtfIterator$1.class -> lastModified(1492098057034)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$getFlatGtfIterator$2.class -> lastModified(1492098057037)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$writeFlatGtf_DEXSeqFormat$1.class -> lastModified(1492098057040)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$writeFlatGtf_stdFormat$1.class -> lastModified(1492098057042)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$.class -> lastModified(1492098056945)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$prepFlatGtfFile_runner.class -> lastModified(1492098057044)
-C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile.class -> lastModified(1492098056938)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$1.class -> lastModified(1508511461038)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$10.class -> lastModified(1508511461044)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$2.class -> lastModified(1508511461048)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$3.class -> lastModified(1508511461053)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$4.class -> lastModified(1508511461058)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$5$$anonfun$6.class -> lastModified(1508511461071)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$5.class -> lastModified(1508511461066)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$7.class -> lastModified(1508511461078)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$8$$anonfun$9.class -> lastModified(1508511461100)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$8.class -> lastModified(1508511461090)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$buildFeatures2$1$$anonfun$apply$6.class -> lastModified(1508511461122)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$buildFeatures2$1.class -> lastModified(1508511461111)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$buildGeneSets$1.class -> lastModified(1508511461129)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$buildGeneSets$2$$anonfun$apply$4.class -> lastModified(1508511461144)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$buildGeneSets$2$$anonfun$apply$5.class -> lastModified(1508511461148)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$buildGeneSets$2.class -> lastModified(1508511461136)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$buildGenomicArrayOfSets_Tx_and_Map$1.class -> lastModified(1508511461159)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$buildSpliceJunctionMap$1.class -> lastModified(1508511461163)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$buildSpliceJunctionMap$2$$anonfun$apply$1.class -> lastModified(1508511461174)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$buildSpliceJunctionMap$2$$anonfun$apply$2$$anonfun$apply$3.class -> lastModified(1508511461185)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$buildSpliceJunctionMap$2$$anonfun$apply$2.class -> lastModified(1508511461179)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$buildSpliceJunctionMap$2.class -> lastModified(1508511461168)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$buildTxCdsSpanMap$1.class -> lastModified(1508511461191)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$getFlatGtfIterator$1.class -> lastModified(1508511461195)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$getFlatGtfIterator$2.class -> lastModified(1508511461201)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$writeFlatGtf_DEXSeqFormat$1.class -> lastModified(1508511461206)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$$anonfun$writeFlatGtf_stdFormat$1.class -> lastModified(1508511461210)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$.class -> lastModified(1508511461027)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile$prepFlatGtfFile_runner.class -> lastModified(1508511461223)
+C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\prepFlatGtfFile.class -> lastModified(1508511460913)
 C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\runFeatureComboCt$$anonfun$1.class -> lastModified(1492098057073)
 C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\runFeatureComboCt$$anonfun$2.class -> lastModified(1492098057076)
 C:\Users\hartleys\workspace\HartleyUtils\bin\fileConversionUtils\runFeatureComboCt$$anonfun$3$$anonfun$apply$1.class -> lastModified(1492098057083)
@@ -3682,70 +3695,70 @@ C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commandLineUI$UnaryAr
 C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commandLineUI$UnaryArgument$.class -> lastModified(1492098057750)
 C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commandLineUI$UnaryArgument.class -> lastModified(1492098057746)
 C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commandLineUI.class -> lastModified(1492098057562)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anon$1$$anonfun$calcBufferLimit$1.class -> lastModified(1492098057840)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anon$1.class -> lastModified(1492098057837)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anon$2.class -> lastModified(1492098057850)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anon$3.class -> lastModified(1492098057860)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anon$4.class -> lastModified(1492098057868)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anon$5.class -> lastModified(1492098057878)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$1.class -> lastModified(1492098057881)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$10.class -> lastModified(1492098057884)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$11.class -> lastModified(1492098057887)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$12.class -> lastModified(1492098057890)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$13.class -> lastModified(1492098057893)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$14$$anonfun$apply$3.class -> lastModified(1492098057903)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$14.class -> lastModified(1492098057897)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$15.class -> lastModified(1492098057906)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$16.class -> lastModified(1492098057909)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$17.class -> lastModified(1492098057912)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$18.class -> lastModified(1492098057916)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$19.class -> lastModified(1492098057920)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$2.class -> lastModified(1492098057923)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$20.class -> lastModified(1492098057926)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$21.class -> lastModified(1492098057928)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$22.class -> lastModified(1492098057937)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$23.class -> lastModified(1492098057940)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$24.class -> lastModified(1492098057942)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$25.class -> lastModified(1492098057944)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$3.class -> lastModified(1492098057947)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$4$$anonfun$apply$1.class -> lastModified(1492098057953)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$4.class -> lastModified(1492098057950)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$5.class -> lastModified(1492098057955)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$6$$anonfun$apply$2.class -> lastModified(1492098057960)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$6.class -> lastModified(1492098057958)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$7.class -> lastModified(1492098057963)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$8.class -> lastModified(1492098057965)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$9.class -> lastModified(1492098057967)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$complementSequenceString$1.class -> lastModified(1492098057969)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$getAminoAcidFromSeq$1.class -> lastModified(1492098057972)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$getSRPairIter_singleEnd$1.class -> lastModified(1492098057974)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$initSamRecordIterator$1.class -> lastModified(1492098057977)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$samRecordPairIterator_resorted$1.class -> lastModified(1492098057979)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$samRecordPairIterator_unsorted$1.class -> lastModified(1492098057981)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$samRecordPairIterator_withMulti$1.class -> lastModified(1492098057984)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$samRecordPairIterator_withMulti_singleEnd$1.class -> lastModified(1492098057986)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$.class -> lastModified(1492098057832)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$CigarHolder$$anonfun$cigOps$1.class -> lastModified(1492098058000)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$CigarHolder$$anonfun$cigOps$2.class -> lastModified(1492098058003)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$CigarHolder$.class -> lastModified(1492098057994)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$CigarHolder.class -> lastModified(1492098057997)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$CigOp$.class -> lastModified(1492098057992)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$CigOp.class -> lastModified(1492098057990)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$EmptyFastqReader.class -> lastModified(1492098058009)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$FastqLine$$anonfun$check$1.class -> lastModified(1492098058021)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$FastqLine$$anonfun$qualVector$1.class -> lastModified(1492098058026)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$FastqLine$.class -> lastModified(1492098058012)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$FastqLine.class -> lastModified(1492098058018)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$FastqReader$.class -> lastModified(1492098058039)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$FastqReader.class -> lastModified(1492098058035)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$GenomicInterval$.class -> lastModified(1492098058056)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$GenomicInterval.class -> lastModified(1492098058050)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$GIVOrdering$class.class -> lastModified(1492098058046)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$GIVOrdering.class -> lastModified(1492098058042)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$PairIteratorWithLimit.class -> lastModified(1492098058066)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$SamFileAttributes$.class -> lastModified(1492098058070)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$SamFileAttributes.class -> lastModified(1492098058082)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils.class -> lastModified(1492098057816)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anon$1$$anonfun$calcBufferLimit$1.class -> lastModified(1508512030519)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anon$1.class -> lastModified(1508512030514)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anon$2.class -> lastModified(1508512030557)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anon$3.class -> lastModified(1508512030580)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anon$4.class -> lastModified(1508512030625)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anon$5.class -> lastModified(1508512030652)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$1.class -> lastModified(1508512030656)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$10.class -> lastModified(1508512030661)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$11.class -> lastModified(1508512030664)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$12.class -> lastModified(1508512030668)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$13.class -> lastModified(1508512030672)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$14$$anonfun$apply$3.class -> lastModified(1508512030680)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$14.class -> lastModified(1508512030676)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$15.class -> lastModified(1508512030685)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$16.class -> lastModified(1508512030689)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$17.class -> lastModified(1508512030693)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$18.class -> lastModified(1508512030697)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$19.class -> lastModified(1508512030702)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$2.class -> lastModified(1508512030706)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$20.class -> lastModified(1508512030711)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$21.class -> lastModified(1508512030715)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$22.class -> lastModified(1508512030720)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$23.class -> lastModified(1508512030727)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$24.class -> lastModified(1508512030736)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$25.class -> lastModified(1508512030740)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$3.class -> lastModified(1508512030744)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$4$$anonfun$apply$1.class -> lastModified(1508512030765)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$4.class -> lastModified(1508512030752)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$5.class -> lastModified(1508512030769)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$6$$anonfun$apply$2.class -> lastModified(1508512030781)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$6.class -> lastModified(1508512030775)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$7.class -> lastModified(1508512030788)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$8.class -> lastModified(1508512030794)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$9.class -> lastModified(1508512030798)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$complementSequenceString$1.class -> lastModified(1508512030802)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$getAminoAcidFromSeq$1.class -> lastModified(1508512030807)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$getSRPairIter_singleEnd$1.class -> lastModified(1508512030811)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$initSamRecordIterator$1.class -> lastModified(1508512030821)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$samRecordPairIterator_resorted$1.class -> lastModified(1508512030824)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$samRecordPairIterator_unsorted$1.class -> lastModified(1508512030827)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$samRecordPairIterator_withMulti$1.class -> lastModified(1508512030831)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$$anonfun$samRecordPairIterator_withMulti_singleEnd$1.class -> lastModified(1508512030833)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$.class -> lastModified(1508512030506)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$CigarHolder$$anonfun$cigOps$1.class -> lastModified(1508512030865)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$CigarHolder$$anonfun$cigOps$2.class -> lastModified(1508512030869)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$CigarHolder$.class -> lastModified(1508512030860)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$CigarHolder.class -> lastModified(1508512030856)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$CigOp$.class -> lastModified(1508512030849)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$CigOp.class -> lastModified(1508512030845)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$EmptyFastqReader.class -> lastModified(1508512030886)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$FastqLine$$anonfun$check$1.class -> lastModified(1508512030904)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$FastqLine$$anonfun$qualVector$1.class -> lastModified(1508512030908)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$FastqLine$.class -> lastModified(1508512030900)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$FastqLine.class -> lastModified(1508512030896)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$FastqReader$.class -> lastModified(1508512030925)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$FastqReader.class -> lastModified(1508512030921)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$GenomicInterval$.class -> lastModified(1508512030938)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$GenomicInterval.class -> lastModified(1508512030947)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$GIVOrdering$class.class -> lastModified(1508512030932)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$GIVOrdering.class -> lastModified(1508512030928)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$PairIteratorWithLimit.class -> lastModified(1508512030958)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$SamFileAttributes$.class -> lastModified(1508512030971)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils$SamFileAttributes.class -> lastModified(1508512030967)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\commonSeqUtils.class -> lastModified(1508512030448)
 C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\fileUtils$$anon$1.class -> lastModified(1492098058103)
 C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\fileUtils$$anonfun$1.class -> lastModified(1492098058106)
 C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\fileUtils$$anonfun$2.class -> lastModified(1492098058109)
@@ -3762,57 +3775,56 @@ C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\fileUtils$DocWriterUt
 C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\fileUtils$DocWriterUtil.class -> lastModified(1492098058134)
 C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\fileUtils$SummaryWriter.class -> lastModified(1492098058145)
 C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\fileUtils.class -> lastModified(1492098058087)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$.class -> lastModified(1492098058158)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$EfficientGenomeSeqContainer.class -> lastModified(1492098058161)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$EfficientGenomeSeqContainer_FAList$$anonfun$4.class -> lastModified(1492098058166)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$EfficientGenomeSeqContainer_FAList$$anonfun$switchToChrom$5.class -> lastModified(1492098058169)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$EfficientGenomeSeqContainer_FAList.class -> lastModified(1492098058164)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$EfficientGenomeSeqContainer_MFA$$anonfun$1.class -> lastModified(1492098058175)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$EfficientGenomeSeqContainer_MFA$$anonfun$2.class -> lastModified(1492098058178)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$EfficientGenomeSeqContainer_MFA$$anonfun$3.class -> lastModified(1492098058181)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$EfficientGenomeSeqContainer_MFA$$anonfun$switchToChrom$1.class -> lastModified(1492098058183)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$EfficientGenomeSeqContainer_MFA$$anonfun$switchToChrom$2.class -> lastModified(1492098058186)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$EfficientGenomeSeqContainer_MFA$$anonfun$switchToChrom$3.class -> lastModified(1492098058189)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$EfficientGenomeSeqContainer_MFA$$anonfun$switchToChrom$4.class -> lastModified(1492098058192)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$EfficientGenomeSeqContainer_MFA.class -> lastModified(1492098058172)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$GenomicArrayOfSets$$anonfun$printGenomicArrayToFile$1.class -> lastModified(1492098058201)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$GenomicArrayOfSets$$anonfun$printGenomicArrayToFile$2.class -> lastModified(1492098058204)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$GenomicArrayOfSets$.class -> lastModified(1492098058195)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$GenomicArrayOfSets.class -> lastModified(1492098058197)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$GenomicArrayOfSets_Generic$$anonfun$finalizeStepVectors$1.class -> lastModified(1492098058212)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$GenomicArrayOfSets_Generic$$anonfun$getSteps$1$$anonfun$apply$1.class -> lastModified(1492098058216)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$GenomicArrayOfSets_Generic$$anonfun$getSteps$1.class -> lastModified(1492098058214)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$GenomicArrayOfSets_Generic.class -> lastModified(1492098058209)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$GenomicArrayOfSets_Stranded$$anonfun$finalizeStepVectors$2.class -> lastModified(1492098058222)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$GenomicArrayOfSets_Stranded$$anonfun$getSteps$2$$anonfun$apply$2.class -> lastModified(1492098058228)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$GenomicArrayOfSets_Stranded$$anonfun$getSteps$2.class -> lastModified(1492098058225)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$GenomicArrayOfSets_Stranded.class -> lastModified(1492098058220)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$GenomicArrayOfSets_Unstranded$$anonfun$finalizeStepVectors$3.class -> lastModified(1492098058242)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$GenomicArrayOfSets_Unstranded$$anonfun$getSteps$3$$anonfun$apply$3.class -> lastModified(1492098058250)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$GenomicArrayOfSets_Unstranded$$anonfun$getSteps$3.class -> lastModified(1492098058246)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$GenomicArrayOfSets_Unstranded.class -> lastModified(1492098058232)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$GenomicSpliceJunctionSet$.class -> lastModified(1492098058253)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$GenomicSpliceJunctionSet.class -> lastModified(1492098058257)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$GenomicStepVector$$anon$1.class -> lastModified(1492098058270)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$GenomicStepVector.class -> lastModified(1492098058260)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$InternalStepVector$$anon$2.class -> lastModified(1492098058286)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$InternalStepVector$$anon$3.class -> lastModified(1492098058295)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$InternalStepVector$$anonfun$addInterval$1.class -> lastModified(1492098058298)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$InternalStepVector$.class -> lastModified(1492098058273)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$InternalStepVector.class -> lastModified(1492098058278)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils.class -> lastModified(1492098058155)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicUtils$$anon$1.class -> lastModified(1492098058314)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicUtils$$anon$2.class -> lastModified(1492098058320)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicUtils$$anon$3.class -> lastModified(1492098058329)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicUtils$$anonfun$1.class -> lastModified(1492098058332)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicUtils$$anonfun$getAlignedBasePositionsFromRead$1.class -> lastModified(1492098058335)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicUtils$$anonfun$getAlignedBasePositionsFromRead$2.class -> lastModified(1492098058338)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicUtils$$anonfun$mergeGenomicIntervalSets$1.class -> lastModified(1492098058341)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicUtils$$anonfun$truncateCigarBlocks$1.class -> lastModified(1492098058344)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicUtils$.class -> lastModified(1492098058307)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicUtils$CigarBlock$.class -> lastModified(1492098058352)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicUtils$CigarBlock.class -> lastModified(1492098058349)
-C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicUtils.class -> lastModified(1492098058302)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$.class -> lastModified(1508512098902)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$EfficientGenomeSeqContainer.class -> lastModified(1508512098910)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$EfficientGenomeSeqContainer_FAList$$anonfun$5.class -> lastModified(1508512098918)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$EfficientGenomeSeqContainer_FAList$$anonfun$switchToChrom$3.class -> lastModified(1508512098921)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$EfficientGenomeSeqContainer_FAList.class -> lastModified(1508512098915)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$EfficientGenomeSeqContainer_MFA$$anonfun$1.class -> lastModified(1508512098929)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$EfficientGenomeSeqContainer_MFA$$anonfun$2.class -> lastModified(1508512098933)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$EfficientGenomeSeqContainer_MFA$$anonfun$3.class -> lastModified(1508512098936)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$EfficientGenomeSeqContainer_MFA$$anonfun$4.class -> lastModified(1508512098938)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$EfficientGenomeSeqContainer_MFA$$anonfun$switchToChrom$1.class -> lastModified(1508512098942)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$EfficientGenomeSeqContainer_MFA$$anonfun$switchToChrom$2.class -> lastModified(1508512098944)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$EfficientGenomeSeqContainer_MFA.class -> lastModified(1508512098926)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$GenomicArrayOfSets$$anonfun$printGenomicArrayToFile$1.class -> lastModified(1508512098954)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$GenomicArrayOfSets$$anonfun$printGenomicArrayToFile$2.class -> lastModified(1508512098958)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$GenomicArrayOfSets$.class -> lastModified(1508512098948)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$GenomicArrayOfSets.class -> lastModified(1508512098951)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$GenomicArrayOfSets_Generic$$anonfun$finalizeStepVectors$1.class -> lastModified(1508512098968)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$GenomicArrayOfSets_Generic$$anonfun$getSteps$1$$anonfun$apply$1.class -> lastModified(1508512098974)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$GenomicArrayOfSets_Generic$$anonfun$getSteps$1.class -> lastModified(1508512098971)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$GenomicArrayOfSets_Generic.class -> lastModified(1508512098964)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$GenomicArrayOfSets_Stranded$$anonfun$finalizeStepVectors$2.class -> lastModified(1508512098985)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$GenomicArrayOfSets_Stranded$$anonfun$getSteps$2$$anonfun$apply$2.class -> lastModified(1508512098991)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$GenomicArrayOfSets_Stranded$$anonfun$getSteps$2.class -> lastModified(1508512098988)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$GenomicArrayOfSets_Stranded.class -> lastModified(1508512098981)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$GenomicArrayOfSets_Unstranded$$anonfun$finalizeStepVectors$3.class -> lastModified(1508512099000)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$GenomicArrayOfSets_Unstranded$$anonfun$getSteps$3$$anonfun$apply$3.class -> lastModified(1508512099007)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$GenomicArrayOfSets_Unstranded$$anonfun$getSteps$3.class -> lastModified(1508512099004)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$GenomicArrayOfSets_Unstranded.class -> lastModified(1508512098996)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$GenomicSpliceJunctionSet$.class -> lastModified(1508512099012)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$GenomicSpliceJunctionSet.class -> lastModified(1508512099017)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$GenomicStepVector$$anon$1.class -> lastModified(1508512099031)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$GenomicStepVector.class -> lastModified(1508512099021)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$InternalStepVector$$anon$2.class -> lastModified(1508512099055)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$InternalStepVector$$anon$3.class -> lastModified(1508512099067)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$InternalStepVector$$anonfun$addInterval$1.class -> lastModified(1508512099070)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$InternalStepVector$.class -> lastModified(1508512099035)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils$InternalStepVector.class -> lastModified(1508512099042)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicAnnoUtils.class -> lastModified(1508512098897)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicUtils$$anon$1.class -> lastModified(1508512133029)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicUtils$$anon$2.class -> lastModified(1508512133042)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicUtils$$anon$3.class -> lastModified(1508512133056)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicUtils$$anonfun$1.class -> lastModified(1508512133059)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicUtils$$anonfun$getAlignedBasePositionsFromRead$1.class -> lastModified(1508512133063)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicUtils$$anonfun$getAlignedBasePositionsFromRead$2.class -> lastModified(1508512133066)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicUtils$$anonfun$mergeGenomicIntervalSets$1.class -> lastModified(1508512133070)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicUtils$$anonfun$truncateCigarBlocks$1.class -> lastModified(1508512133074)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicUtils$.class -> lastModified(1508512133013)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicUtils$CigarBlock$.class -> lastModified(1508512133083)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicUtils$CigarBlock.class -> lastModified(1508512133079)
+C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\genomicUtils.class -> lastModified(1508512133005)
 C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\GtfTool$.class -> lastModified(1492098057129)
 C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\GtfTool$defaultGtfCodes$.class -> lastModified(1492098057321)
 C:\Users\hartleys\workspace\HartleyUtils\bin\internalUtils\GtfTool$FlatGtfLine$$anonfun$5.class -> lastModified(1492098057139)
@@ -4036,24 +4048,24 @@ C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcChromCount$$anonfun$2.cla
 C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcChromCount$$anonfun$writeOutput$1.class -> lastModified(1492098058800)
 C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcChromCount$.class -> lastModified(1492098058789)
 C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcChromCount.class -> lastModified(1492098058793)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarDistribution$$anonfun$1$$anonfun$apply$mcVI$sp$2.class -> lastModified(1492098058813)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarDistribution$$anonfun$1.class -> lastModified(1492098058810)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarDistribution$$anonfun$2$$anonfun$apply$mcVI$sp$3.class -> lastModified(1492098058818)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarDistribution$$anonfun$2.class -> lastModified(1492098058815)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarDistribution$$anonfun$4.class -> lastModified(1492098058820)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarDistribution$$anonfun$5.class -> lastModified(1492098058823)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarDistribution$$anonfun$readCigar$1.class -> lastModified(1492098058825)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarDistribution$$anonfun$readCigar$2$$anonfun$apply$1.class -> lastModified(1492098058830)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarDistribution$$anonfun$readCigar$2.class -> lastModified(1492098058827)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarDistribution$$anonfun$writeOpLengthDistribution$1$$anonfun$3.class -> lastModified(1492098058834)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarDistribution$$anonfun$writeOpLengthDistribution$1$$anonfun$apply$2.class -> lastModified(1492098058836)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarDistribution$$anonfun$writeOpLengthDistribution$1$$anonfun$apply$3.class -> lastModified(1492098058839)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarDistribution$$anonfun$writeOpLengthDistribution$1.class -> lastModified(1492098058832)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarDistribution$$anonfun$writePositionOpDistribution$1$$anonfun$apply$mcVI$sp$1.class -> lastModified(1492098058843)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarDistribution$$anonfun$writePositionOpDistribution$1.class -> lastModified(1492098058841)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarDistribution$$anonfun$writePositionOpDistribution$2.class -> lastModified(1492098058845)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarDistribution$.class -> lastModified(1492098058803)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarDistribution.class -> lastModified(1492098058807)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarDistribution$$anonfun$1$$anonfun$apply$mcVI$sp$2.class -> lastModified(1508512198084)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarDistribution$$anonfun$1.class -> lastModified(1508512198077)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarDistribution$$anonfun$2$$anonfun$apply$mcVI$sp$3.class -> lastModified(1508512198091)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarDistribution$$anonfun$2.class -> lastModified(1508512198088)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarDistribution$$anonfun$4.class -> lastModified(1508512198095)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarDistribution$$anonfun$5.class -> lastModified(1508512198099)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarDistribution$$anonfun$readCigar$1.class -> lastModified(1508512198102)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarDistribution$$anonfun$readCigar$2$$anonfun$apply$1.class -> lastModified(1508512198110)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarDistribution$$anonfun$readCigar$2.class -> lastModified(1508512198106)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarDistribution$$anonfun$writeOpLengthDistribution$1$$anonfun$3.class -> lastModified(1508512198118)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarDistribution$$anonfun$writeOpLengthDistribution$1$$anonfun$apply$2.class -> lastModified(1508512198121)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarDistribution$$anonfun$writeOpLengthDistribution$1$$anonfun$apply$3.class -> lastModified(1508512198125)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarDistribution$$anonfun$writeOpLengthDistribution$1.class -> lastModified(1508512198114)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarDistribution$$anonfun$writePositionOpDistribution$1$$anonfun$apply$mcVI$sp$1.class -> lastModified(1508512198134)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarDistribution$$anonfun$writePositionOpDistribution$1.class -> lastModified(1508512198129)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarDistribution$$anonfun$writePositionOpDistribution$2.class -> lastModified(1508512198138)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarDistribution$.class -> lastModified(1508512198073)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarDistribution.class -> lastModified(1508512198062)
 C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarLocusCounts$$anonfun$1.class -> lastModified(1492098058854)
 C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarLocusCounts$$anonfun$2.class -> lastModified(1492098058856)
 C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarLocusCounts$$anonfun$getCigarLocusSetFromRead$1.class -> lastModified(1492098058858)
@@ -4066,65 +4078,65 @@ C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarLocusCounts$$anonfun
 C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarLocusCounts$$anonfun$writeOutput$4.class -> lastModified(1492098058874)
 C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarLocusCounts$.class -> lastModified(1492098058848)
 C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarLocusCounts.class -> lastModified(1492098058852)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarMatch$$anonfun$1.class -> lastModified(1492098058889)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarMatch$$anonfun$2.class -> lastModified(1492098058891)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarMatch$$anonfun$3$$anonfun$apply$1.class -> lastModified(1492098058897)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarMatch$$anonfun$3.class -> lastModified(1492098058894)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarMatch$$anonfun$4.class -> lastModified(1492098058899)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarMatch$$anonfun$5$$anonfun$apply$2.class -> lastModified(1492098058904)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarMatch$$anonfun$5.class -> lastModified(1492098058902)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarMatch$$anonfun$6.class -> lastModified(1492098058906)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarMatch$$anonfun$7$$anonfun$apply$3.class -> lastModified(1492098058910)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarMatch$$anonfun$7.class -> lastModified(1492098058908)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarMatch$$anonfun$8.class -> lastModified(1492098058912)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarMatch$$anonfun$9.class -> lastModified(1492098058915)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarMatch$$anonfun$addComparison$1.class -> lastModified(1492098058918)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarMatch$$anonfun$compareOverlappingOps$1.class -> lastModified(1492098058920)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarMatch$$anonfun$mergeComparisons$1.class -> lastModified(1492098058922)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarMatch$$anonfun$mergeComparisons$2.class -> lastModified(1492098058925)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarMatch$$anonfun$mergeComparisons$3.class -> lastModified(1492098058927)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarMatch$$anonfun$mergeComparisons$4.class -> lastModified(1492098058930)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarMatch$.class -> lastModified(1492098058879)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarMatch.class -> lastModified(1492098058886)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$1.class -> lastModified(1492098058943)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$12.class -> lastModified(1492098058945)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$13.class -> lastModified(1492098058947)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$14.class -> lastModified(1492098058949)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$15.class -> lastModified(1492098058953)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$16.class -> lastModified(1492098058955)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$17.class -> lastModified(1492098058958)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$18.class -> lastModified(1492098058961)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$19.class -> lastModified(1492098058963)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$2.class -> lastModified(1492098058966)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$20.class -> lastModified(1492098058968)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$21.class -> lastModified(1492098058971)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$22.class -> lastModified(1492098058974)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$23.class -> lastModified(1492098058976)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$24.class -> lastModified(1492098058979)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$3.class -> lastModified(1492098058982)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$4.class -> lastModified(1492098058985)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$5.class -> lastModified(1492098058988)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$6$$anonfun$7.class -> lastModified(1492098059000)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$6$$anonfun$8.class -> lastModified(1492098059003)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$6.class -> lastModified(1492098058997)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$9$$anonfun$10.class -> lastModified(1492098059008)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$9$$anonfun$11.class -> lastModified(1492098059011)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$9$$anonfun$apply$3.class -> lastModified(1492098059013)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$9$$anonfun$apply$4.class -> lastModified(1492098059015)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$9.class -> lastModified(1492098059006)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$getExonsFromRead$1$$anonfun$apply$2.class -> lastModified(1492098059021)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$getExonsFromRead$1.class -> lastModified(1492098059018)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$getSpliceJunctionSetFromRead$1.class -> lastModified(1492098059024)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$getSpliceJunctionSetFromRead$2.class -> lastModified(1492098059026)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$runOnReadPair$1.class -> lastModified(1492098059029)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$writeOutput$1.class -> lastModified(1492098059031)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$writeOutput$2.class -> lastModified(1492098059033)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$writeOutput$3.class -> lastModified(1492098059036)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$writeOutput$4$$anonfun$apply$1.class -> lastModified(1492098059041)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$writeOutput$4.class -> lastModified(1492098059038)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$writeOutput$5.class -> lastModified(1492098059044)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$.class -> lastModified(1492098058932)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt.class -> lastModified(1492098058940)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarMatch$$anonfun$1.class -> lastModified(1508512230577)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarMatch$$anonfun$2.class -> lastModified(1508512230585)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarMatch$$anonfun$3$$anonfun$apply$1.class -> lastModified(1508512230597)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarMatch$$anonfun$3.class -> lastModified(1508512230591)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarMatch$$anonfun$4.class -> lastModified(1508512230600)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarMatch$$anonfun$5$$anonfun$apply$2.class -> lastModified(1508512230607)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarMatch$$anonfun$5.class -> lastModified(1508512230604)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarMatch$$anonfun$6.class -> lastModified(1508512230612)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarMatch$$anonfun$7$$anonfun$apply$3.class -> lastModified(1508512230618)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarMatch$$anonfun$7.class -> lastModified(1508512230615)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarMatch$$anonfun$8.class -> lastModified(1508512230622)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarMatch$$anonfun$9.class -> lastModified(1508512230625)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarMatch$$anonfun$addComparison$1.class -> lastModified(1508512230628)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarMatch$$anonfun$compareOverlappingOps$1.class -> lastModified(1508512230632)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarMatch$$anonfun$mergeComparisons$1.class -> lastModified(1508512230635)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarMatch$$anonfun$mergeComparisons$2.class -> lastModified(1508512230640)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarMatch$$anonfun$mergeComparisons$3.class -> lastModified(1508512230643)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarMatch$$anonfun$mergeComparisons$4.class -> lastModified(1508512230647)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarMatch$.class -> lastModified(1508512230572)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcCigarMatch.class -> lastModified(1508512230566)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$1.class -> lastModified(1508512277874)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$12.class -> lastModified(1508512277878)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$13.class -> lastModified(1508512277881)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$14.class -> lastModified(1508512277884)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$15.class -> lastModified(1508512277887)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$16.class -> lastModified(1508512277890)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$17.class -> lastModified(1508512277894)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$18.class -> lastModified(1508512277897)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$19.class -> lastModified(1508512277901)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$2.class -> lastModified(1508512277905)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$20.class -> lastModified(1508512277908)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$21.class -> lastModified(1508512277911)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$22.class -> lastModified(1508512277914)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$23.class -> lastModified(1508512277918)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$24.class -> lastModified(1508512277921)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$3.class -> lastModified(1508512277924)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$4.class -> lastModified(1508512277928)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$5.class -> lastModified(1508512277931)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$6$$anonfun$7.class -> lastModified(1508512277938)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$6$$anonfun$8.class -> lastModified(1508512277941)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$6.class -> lastModified(1508512277935)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$9$$anonfun$10.class -> lastModified(1508512277948)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$9$$anonfun$11.class -> lastModified(1508512277952)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$9$$anonfun$apply$3.class -> lastModified(1508512277955)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$9$$anonfun$apply$4.class -> lastModified(1508512277959)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$9.class -> lastModified(1508512277945)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$getExonsFromRead$1$$anonfun$apply$2.class -> lastModified(1508512277966)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$getExonsFromRead$1.class -> lastModified(1508512277963)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$getSpliceJunctionSetFromRead$1.class -> lastModified(1508512277970)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$getSpliceJunctionSetFromRead$2.class -> lastModified(1508512277973)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$runOnReadPair$1.class -> lastModified(1508512277977)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$writeOutput$1.class -> lastModified(1508512277980)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$writeOutput$2.class -> lastModified(1508512277984)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$writeOutput$3.class -> lastModified(1508512277988)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$writeOutput$4$$anonfun$apply$1.class -> lastModified(1508512277996)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$writeOutput$4.class -> lastModified(1508512277991)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$$anonfun$writeOutput$5.class -> lastModified(1508512277999)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt$.class -> lastModified(1508512277855)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcFeatureComboCt.class -> lastModified(1508512277868)
 C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGCContentCount$$anonfun$1.class -> lastModified(1492098059054)
 C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGCContentCount$$anonfun$2$$anonfun$apply$1.class -> lastModified(1492098059059)
 C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGCContentCount$$anonfun$2.class -> lastModified(1492098059056)
@@ -4148,150 +4160,150 @@ C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGCContentCount$$anonfun$w
 C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGCContentCount$$anonfun$writeOutput$9.class -> lastModified(1492098059114)
 C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGCContentCount$.class -> lastModified(1492098059046)
 C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGCContentCount.class -> lastModified(1492098059051)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$1.class -> lastModified(1492098059141)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$10.class -> lastModified(1492098059143)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$11.class -> lastModified(1492098059146)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$12.class -> lastModified(1492098059149)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$13$$anonfun$apply$7$$anonfun$apply$8.class -> lastModified(1492098059157)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$13$$anonfun$apply$7.class -> lastModified(1492098059155)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$13.class -> lastModified(1492098059152)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$14.class -> lastModified(1492098059160)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$15$$anonfun$2.class -> lastModified(1492098059165)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$15.class -> lastModified(1492098059162)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$16$$anonfun$apply$2.class -> lastModified(1492098059170)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$16.class -> lastModified(1492098059167)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$17$$anonfun$apply$9$$anonfun$apply$10.class -> lastModified(1492098059178)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$17$$anonfun$apply$9.class -> lastModified(1492098059176)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$17.class -> lastModified(1492098059173)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$18.class -> lastModified(1492098059181)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$19.class -> lastModified(1492098059183)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$20.class -> lastModified(1492098059186)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$21.class -> lastModified(1492098059188)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$3.class -> lastModified(1492098059191)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$4$$anonfun$apply$4.class -> lastModified(1492098059196)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$4.class -> lastModified(1492098059194)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$5.class -> lastModified(1492098059199)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$6.class -> lastModified(1492098059202)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$7.class -> lastModified(1492098059205)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$8.class -> lastModified(1492098059207)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$9$$anonfun$apply$1.class -> lastModified(1492098059211)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$9.class -> lastModified(1492098059209)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$calculateGeneBodyCoverage$1.class -> lastModified(1492098059213)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$countDeletions$1.class -> lastModified(1492098059216)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$countInsertions$1.class -> lastModified(1492098059219)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$debug_writeGeneBodySpans$1.class -> lastModified(1492098059221)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$debug_writeGeneBodySpans$2$$anonfun$apply$5$$anonfun$apply$6.class -> lastModified(1492098059229)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$debug_writeGeneBodySpans$2$$anonfun$apply$5.class -> lastModified(1492098059226)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$debug_writeGeneBodySpans$2.class -> lastModified(1492098059224)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$featuresNearRead$1$$anonfun$apply$11.class -> lastModified(1492098059234)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$featuresNearRead$1.class -> lastModified(1492098059232)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$geneBody_calculateGeneBodyCoverage_summaries$1$$anonfun$apply$mcVI$sp$1.class -> lastModified(1492098059238)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$geneBody_calculateGeneBodyCoverage_summaries$1.class -> lastModified(1492098059236)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$geneBody_calculateGeneBodyCoverage_summaries$2$$anonfun$apply$mcVI$sp$2.class -> lastModified(1492098059242)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$geneBody_calculateGeneBodyCoverage_summaries$2.class -> lastModified(1492098059240)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$geneBody_calculateGeneBodyCoverage_summaries$3.class -> lastModified(1492098059244)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$geneBody_calculateGeneBodyCoverage_summaries$4.class -> lastModified(1492098059246)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$geneBody_geneSizeQuartiles$1.class -> lastModified(1492098059248)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$geneBody_intervalBreaks$1.class -> lastModified(1492098059250)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$geneLengthMap$1$$anonfun$apply$15.class -> lastModified(1492098059254)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$geneLengthMap$1.class -> lastModified(1492098059252)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$getDeletionSetFromRead$1.class -> lastModified(1492098059256)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$getDeletionSetFromRead$2.class -> lastModified(1492098059258)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$getIndelSetFromRead$1.class -> lastModified(1492098059260)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$getIndelSetFromRead$2.class -> lastModified(1492098059262)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$getInsertionSetFromRead$1.class -> lastModified(1492098059264)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$getInsertionSetFromRead$2.class -> lastModified(1492098059266)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$getPairFeaturesNear$1$$anonfun$apply$13.class -> lastModified(1492098059269)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$getPairFeaturesNear$1.class -> lastModified(1492098059268)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$getReadFeatures$1$$anonfun$apply$14.class -> lastModified(1492098059274)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$getReadFeatures$1.class -> lastModified(1492098059272)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$helper_findReadIntervalCoverage$1.class -> lastModified(1492098059276)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$makeGeneBodyCoverageCountArrays$1.class -> lastModified(1492098059278)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$qcUtils$qcGetGeneCounts$$helper_calculateBreakMap$1.class -> lastModified(1492098059279)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$qcUtils$qcGetGeneCounts$$helper_calculateBreaks$1.class -> lastModified(1492098059281)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$qcUtils$qcGetGeneCounts$$helper_findSpanIntervalCoverage$1$$anonfun$apply$3.class -> lastModified(1492098059285)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$qcUtils$qcGetGeneCounts$$helper_findSpanIntervalCoverage$1.class -> lastModified(1492098059283)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$qcUtils$qcGetGeneCounts$$helper_findSpanIntervalCoverage$2.class -> lastModified(1492098059287)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$readIsNearFeatures$1$$anonfun$apply$12.class -> lastModified(1492098059291)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$readIsNearFeatures$1.class -> lastModified(1492098059289)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$runOnReadPair$1.class -> lastModified(1492098059293)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$runOnReadPair$2.class -> lastModified(1492098059295)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$runOnReadPair$3.class -> lastModified(1492098059297)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$runOnReadPair$4.class -> lastModified(1492098059299)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$runOnReadPair$5.class -> lastModified(1492098059301)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$runOnReadPair$6.class -> lastModified(1492098059303)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$writeGeneBodyCoverage_genewise$1.class -> lastModified(1492098059305)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$writeOutput$1.class -> lastModified(1492098059307)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$writeOutput$2.class -> lastModified(1492098059309)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$writeOutput$3.class -> lastModified(1492098059311)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$writeOutput$4$$anonfun$22.class -> lastModified(1492098059322)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$writeOutput$4$$anonfun$23.class -> lastModified(1492098059324)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$writeOutput$4$$anonfun$24.class -> lastModified(1492098059326)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$writeOutput$4$$anonfun$25.class -> lastModified(1492098059328)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$writeOutput$4.class -> lastModified(1492098059320)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$writeOutput$5.class -> lastModified(1492098059330)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$.class -> lastModified(1492098059138)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts.class -> lastModified(1492098059131)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$1.class -> lastModified(1492098059365)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$2.class -> lastModified(1492098059367)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$buildGenomicArrayOfSets_fromGtf$1.class -> lastModified(1492098059370)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$buildGenomicArrayOfSets_fromGtf$2.class -> lastModified(1492098059372)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$generateTargetArray$1.class -> lastModified(1492098059375)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$initializeCounter$1.class -> lastModified(1492098059377)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$makeFlatReader$1.class -> lastModified(1492098059380)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$makeFlatReader$2.class -> lastModified(1492098059382)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$qcUtils$qcGtfAnnotationBuilder$$getFlatFeatureList$1.class -> lastModified(1492098059384)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$qcUtils$qcGtfAnnotationBuilder$$getGeneBiotypeMap$1.class -> lastModified(1492098059386)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$qcUtils$qcGtfAnnotationBuilder$$getGeneBiotypeMap$2.class -> lastModified(1492098059389)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$qcUtils$qcGtfAnnotationBuilder$$getGeneLengthMap$1$$anonfun$apply$2.class -> lastModified(1492098059395)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$qcUtils$qcGtfAnnotationBuilder$$getGeneLengthMap$1.class -> lastModified(1492098059391)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$qcUtils$qcGtfAnnotationBuilder$$helper_calculateGeneAssignmentMap_strict$1$$anonfun$apply$1.class -> lastModified(1492098059402)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$qcUtils$qcGtfAnnotationBuilder$$helper_calculateGeneAssignmentMap_strict$1.class -> lastModified(1492098059399)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$qcUtils$qcGtfAnnotationBuilder$$makeFlatExonMap$1.class -> lastModified(1492098059406)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$qcUtils$qcGtfAnnotationBuilder$$makeFlatExonMap$2.class -> lastModified(1492098059409)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$qcUtils$qcGtfAnnotationBuilder$$makeFlatGeneSet$1$$anonfun$apply$3.class -> lastModified(1492098059415)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$qcUtils$qcGtfAnnotationBuilder$$makeFlatGeneSet$1.class -> lastModified(1492098059412)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$qcUtils$qcGtfAnnotationBuilder$$qcGetGeneCounts_geneArea_CDS_readGtf$1.class -> lastModified(1492098059419)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$qcUtils$qcGtfAnnotationBuilder$$qcGetGeneCounts_geneArea_CDS_readGtf$2.class -> lastModified(1492098059422)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$qcUtils$qcGtfAnnotationBuilder$$qcGetGeneCounts_geneArea_INTRONS_readFlatGtf$1.class -> lastModified(1492098059426)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$qcUtils$qcGtfAnnotationBuilder$$qcGetGeneCounts_geneArea_INTRONS_readFlatGtf$2.class -> lastModified(1492098059429)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$qcUtils$qcGtfAnnotationBuilder$$qcGetGeneCounts_geneArea_regions$1.class -> lastModified(1492098059431)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$qcUtils$qcGtfAnnotationBuilder$$qcGetGeneCounts_geneArea_regions$2.class -> lastModified(1492098059434)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$qcUtils$qcGtfAnnotationBuilder$$qcGetGeneCounts_readGtf$1.class -> lastModified(1492098059436)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$qcUtils$qcGtfAnnotationBuilder$$qcGetGeneCounts_readGtf$2.class -> lastModified(1492098059438)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$qcUtils$qcGtfAnnotationBuilder$$qcInnerDistance_readSplicesFromGtfFile$1.class -> lastModified(1492098059440)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$qcUtils$qcGtfAnnotationBuilder$$qcJunctionCounts_makeJunctionMap$1.class -> lastModified(1492098059442)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$.class -> lastModified(1492098059361)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder.class -> lastModified(1492098059349)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anon$1.class -> lastModified(1492098059456)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$1.class -> lastModified(1492098059458)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$10.class -> lastModified(1492098059461)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$11.class -> lastModified(1492098059463)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$12.class -> lastModified(1492098059465)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$2.class -> lastModified(1492098059468)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$3.class -> lastModified(1492098059469)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$4.class -> lastModified(1492098059471)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$5.class -> lastModified(1492098059473)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$6.class -> lastModified(1492098059476)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$7.class -> lastModified(1492098059478)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$8.class -> lastModified(1492098059480)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$9.class -> lastModified(1492098059483)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$findShortestPath_helper$1$$anonfun$apply$1.class -> lastModified(1492098059488)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$findShortestPath_helper$1.class -> lastModified(1492098059485)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$findSplicesBetween$1.class -> lastModified(1492098059490)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$getReadLengthToIntersect$1.class -> lastModified(1492098059493)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$readSplicesFromGtfFile$1.class -> lastModified(1492098059496)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$writeOutput$1.class -> lastModified(1492098059498)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$writeOutput$2.class -> lastModified(1492098059500)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$writeOutput$3$$anonfun$apply$mcVI$sp$1.class -> lastModified(1492098059505)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$writeOutput$3.class -> lastModified(1492098059503)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$writeOutput$4.class -> lastModified(1492098059507)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$writeOutput$5.class -> lastModified(1492098059510)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$writeOutput$6.class -> lastModified(1492098059512)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$writeOutput$7.class -> lastModified(1492098059514)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$writeOutput$8.class -> lastModified(1492098059517)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$.class -> lastModified(1492098059453)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance.class -> lastModified(1492098059448)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$1.class -> lastModified(1508512367156)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$10.class -> lastModified(1508512367159)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$11.class -> lastModified(1508512367162)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$12.class -> lastModified(1508512367166)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$13$$anonfun$apply$7$$anonfun$apply$8.class -> lastModified(1508512367175)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$13$$anonfun$apply$7.class -> lastModified(1508512367172)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$13.class -> lastModified(1508512367170)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$14.class -> lastModified(1508512367177)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$15$$anonfun$2.class -> lastModified(1508512367182)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$15.class -> lastModified(1508512367179)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$16$$anonfun$apply$2.class -> lastModified(1508512367188)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$16.class -> lastModified(1508512367185)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$17$$anonfun$apply$9$$anonfun$apply$10.class -> lastModified(1508512367197)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$17$$anonfun$apply$9.class -> lastModified(1508512367194)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$17.class -> lastModified(1508512367191)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$18.class -> lastModified(1508512367200)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$19.class -> lastModified(1508512367202)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$20.class -> lastModified(1508512367205)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$21.class -> lastModified(1508512367208)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$3.class -> lastModified(1508512367210)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$4$$anonfun$apply$4.class -> lastModified(1508512367215)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$4.class -> lastModified(1508512367213)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$5.class -> lastModified(1508512367218)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$6.class -> lastModified(1508512367221)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$7.class -> lastModified(1508512367225)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$8.class -> lastModified(1508512367228)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$9$$anonfun$apply$1.class -> lastModified(1508512367236)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$9.class -> lastModified(1508512367232)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$calculateGeneBodyCoverage$1.class -> lastModified(1508512367239)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$countDeletions$1.class -> lastModified(1508512367242)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$countInsertions$1.class -> lastModified(1508512367245)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$debug_writeGeneBodySpans$1.class -> lastModified(1508512367248)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$debug_writeGeneBodySpans$2$$anonfun$apply$5$$anonfun$apply$6.class -> lastModified(1508512367257)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$debug_writeGeneBodySpans$2$$anonfun$apply$5.class -> lastModified(1508512367254)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$debug_writeGeneBodySpans$2.class -> lastModified(1508512367251)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$featuresNearRead$1$$anonfun$apply$11.class -> lastModified(1508512367264)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$featuresNearRead$1.class -> lastModified(1508512367260)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$geneBody_calculateGeneBodyCoverage_summaries$1$$anonfun$apply$mcVI$sp$1.class -> lastModified(1508512367272)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$geneBody_calculateGeneBodyCoverage_summaries$1.class -> lastModified(1508512367268)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$geneBody_calculateGeneBodyCoverage_summaries$2$$anonfun$apply$mcVI$sp$2.class -> lastModified(1508512367287)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$geneBody_calculateGeneBodyCoverage_summaries$2.class -> lastModified(1508512367276)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$geneBody_calculateGeneBodyCoverage_summaries$3.class -> lastModified(1508512367293)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$geneBody_calculateGeneBodyCoverage_summaries$4.class -> lastModified(1508512367304)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$geneBody_geneSizeQuartiles$1.class -> lastModified(1508512367308)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$geneBody_intervalBreaks$1.class -> lastModified(1508512367313)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$geneLengthMap$1$$anonfun$apply$15.class -> lastModified(1508512367321)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$geneLengthMap$1.class -> lastModified(1508512367317)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$getDeletionSetFromRead$1.class -> lastModified(1508512367324)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$getDeletionSetFromRead$2.class -> lastModified(1508512367327)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$getIndelSetFromRead$1.class -> lastModified(1508512367329)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$getIndelSetFromRead$2.class -> lastModified(1508512367332)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$getInsertionSetFromRead$1.class -> lastModified(1508512367335)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$getInsertionSetFromRead$2.class -> lastModified(1508512367338)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$getPairFeaturesNear$1$$anonfun$apply$13.class -> lastModified(1508512367344)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$getPairFeaturesNear$1.class -> lastModified(1508512367341)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$getReadFeatures$1$$anonfun$apply$14.class -> lastModified(1508512367350)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$getReadFeatures$1.class -> lastModified(1508512367347)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$helper_findReadIntervalCoverage$1.class -> lastModified(1508512367354)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$makeGeneBodyCoverageCountArrays$1.class -> lastModified(1508512367357)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$qcUtils$qcGetGeneCounts$$helper_calculateBreakMap$1.class -> lastModified(1508512367360)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$qcUtils$qcGetGeneCounts$$helper_calculateBreaks$1.class -> lastModified(1508512367363)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$qcUtils$qcGetGeneCounts$$helper_findSpanIntervalCoverage$1$$anonfun$apply$3.class -> lastModified(1508512367372)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$qcUtils$qcGetGeneCounts$$helper_findSpanIntervalCoverage$1.class -> lastModified(1508512367368)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$qcUtils$qcGetGeneCounts$$helper_findSpanIntervalCoverage$2.class -> lastModified(1508512367375)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$readIsNearFeatures$1$$anonfun$apply$12.class -> lastModified(1508512367381)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$readIsNearFeatures$1.class -> lastModified(1508512367378)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$runOnReadPair$1.class -> lastModified(1508512367391)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$runOnReadPair$2.class -> lastModified(1508512367393)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$runOnReadPair$3.class -> lastModified(1508512367396)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$runOnReadPair$4.class -> lastModified(1508512367399)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$runOnReadPair$5.class -> lastModified(1508512367402)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$runOnReadPair$6.class -> lastModified(1508512367405)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$writeGeneBodyCoverage_genewise$1.class -> lastModified(1508512367410)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$writeOutput$1.class -> lastModified(1508512367414)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$writeOutput$2.class -> lastModified(1508512367417)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$writeOutput$3.class -> lastModified(1508512367421)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$writeOutput$4$$anonfun$22.class -> lastModified(1508512367428)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$writeOutput$4$$anonfun$23.class -> lastModified(1508512367431)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$writeOutput$4$$anonfun$24.class -> lastModified(1508512367434)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$writeOutput$4$$anonfun$25.class -> lastModified(1508512367436)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$writeOutput$4.class -> lastModified(1508512367424)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$$anonfun$writeOutput$5.class -> lastModified(1508512367440)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts$.class -> lastModified(1508512367152)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGetGeneCounts.class -> lastModified(1508512367139)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$1.class -> lastModified(1508512407713)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$2.class -> lastModified(1508512407720)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$buildGenomicArrayOfSets_fromGtf$1.class -> lastModified(1508512407725)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$buildGenomicArrayOfSets_fromGtf$2.class -> lastModified(1508512407731)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$generateTargetArray$1.class -> lastModified(1508512407737)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$initializeCounter$1.class -> lastModified(1508512407742)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$makeFlatReader$1.class -> lastModified(1508512407747)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$makeFlatReader$2.class -> lastModified(1508512407752)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$qcUtils$qcGtfAnnotationBuilder$$getFlatFeatureList$1.class -> lastModified(1508512407756)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$qcUtils$qcGtfAnnotationBuilder$$getGeneBiotypeMap$1.class -> lastModified(1508512407765)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$qcUtils$qcGtfAnnotationBuilder$$getGeneBiotypeMap$2.class -> lastModified(1508512407771)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$qcUtils$qcGtfAnnotationBuilder$$getGeneLengthMap$1$$anonfun$apply$2.class -> lastModified(1508512407781)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$qcUtils$qcGtfAnnotationBuilder$$getGeneLengthMap$1.class -> lastModified(1508512407776)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$qcUtils$qcGtfAnnotationBuilder$$helper_calculateGeneAssignmentMap_strict$1$$anonfun$apply$1.class -> lastModified(1508512407794)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$qcUtils$qcGtfAnnotationBuilder$$helper_calculateGeneAssignmentMap_strict$1.class -> lastModified(1508512407787)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$qcUtils$qcGtfAnnotationBuilder$$makeFlatExonMap$1.class -> lastModified(1508512407799)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$qcUtils$qcGtfAnnotationBuilder$$makeFlatExonMap$2.class -> lastModified(1508512407803)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$qcUtils$qcGtfAnnotationBuilder$$makeFlatGeneSet$1$$anonfun$apply$3.class -> lastModified(1508512407812)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$qcUtils$qcGtfAnnotationBuilder$$makeFlatGeneSet$1.class -> lastModified(1508512407808)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$qcUtils$qcGtfAnnotationBuilder$$qcGetGeneCounts_geneArea_CDS_readGtf$1.class -> lastModified(1508512407816)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$qcUtils$qcGtfAnnotationBuilder$$qcGetGeneCounts_geneArea_CDS_readGtf$2.class -> lastModified(1508512407820)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$qcUtils$qcGtfAnnotationBuilder$$qcGetGeneCounts_geneArea_INTRONS_readFlatGtf$1.class -> lastModified(1508512407826)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$qcUtils$qcGtfAnnotationBuilder$$qcGetGeneCounts_geneArea_INTRONS_readFlatGtf$2.class -> lastModified(1508512407834)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$qcUtils$qcGtfAnnotationBuilder$$qcGetGeneCounts_geneArea_regions$1.class -> lastModified(1508512407840)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$qcUtils$qcGtfAnnotationBuilder$$qcGetGeneCounts_geneArea_regions$2.class -> lastModified(1508512407846)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$qcUtils$qcGtfAnnotationBuilder$$qcGetGeneCounts_readGtf$1.class -> lastModified(1508512407852)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$qcUtils$qcGtfAnnotationBuilder$$qcGetGeneCounts_readGtf$2.class -> lastModified(1508512407857)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$qcUtils$qcGtfAnnotationBuilder$$qcInnerDistance_readSplicesFromGtfFile$1.class -> lastModified(1508512407864)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$$anonfun$qcUtils$qcGtfAnnotationBuilder$$qcJunctionCounts_makeJunctionMap$1.class -> lastModified(1508512407870)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder$.class -> lastModified(1508512407700)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcGtfAnnotationBuilder.class -> lastModified(1508512407656)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anon$1.class -> lastModified(1508512454076)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$1.class -> lastModified(1508512454082)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$10.class -> lastModified(1508512454087)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$11.class -> lastModified(1508512454099)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$12.class -> lastModified(1508512454115)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$2.class -> lastModified(1508512454121)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$3.class -> lastModified(1508512454128)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$4.class -> lastModified(1508512454133)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$5.class -> lastModified(1508512454143)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$6.class -> lastModified(1508512454150)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$7.class -> lastModified(1508512454157)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$8.class -> lastModified(1508512454161)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$9.class -> lastModified(1508512454166)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$findShortestPath_helper$1$$anonfun$apply$1.class -> lastModified(1508512454179)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$findShortestPath_helper$1.class -> lastModified(1508512454172)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$findSplicesBetween$1.class -> lastModified(1508512454183)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$getReadLengthToIntersect$1.class -> lastModified(1508512454191)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$readSplicesFromGtfFile$1.class -> lastModified(1508512454196)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$writeOutput$1.class -> lastModified(1508512454213)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$writeOutput$2.class -> lastModified(1508512454220)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$writeOutput$3$$anonfun$apply$mcVI$sp$1.class -> lastModified(1508512454232)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$writeOutput$3.class -> lastModified(1508512454226)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$writeOutput$4.class -> lastModified(1508512454236)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$writeOutput$5.class -> lastModified(1508512454245)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$writeOutput$6.class -> lastModified(1508512454253)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$writeOutput$7.class -> lastModified(1508512454258)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$$anonfun$writeOutput$8.class -> lastModified(1508512454263)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance$.class -> lastModified(1508512454070)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcInnerDistance.class -> lastModified(1508512454050)
 C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcJunctionCounts$$anonfun$1.class -> lastModified(1492098059527)
 C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcJunctionCounts$$anonfun$10.class -> lastModified(1492098059529)
 C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\qcJunctionCounts$$anonfun$11.class -> lastModified(1492098059531)
@@ -4547,34 +4559,34 @@ C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\QCUtility$QCU_Ordering$clas
 C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\QCUtility$QCU_Ordering.class -> lastModified(1492098058566)
 C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\QCUtility$QCUtility$.class -> lastModified(1492098058573)
 C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\QCUtility.class -> lastModified(1492098058559)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$$anonfun$1.class -> lastModified(1492098060712)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$$anonfun$10$$anonfun$apply$1.class -> lastModified(1492098060717)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$$anonfun$10$$anonfun$apply$2.class -> lastModified(1492098060719)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$$anonfun$10$$anonfun$apply$3.class -> lastModified(1492098060721)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$$anonfun$10$$anonfun$apply$4.class -> lastModified(1492098060723)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$$anonfun$10.class -> lastModified(1492098060715)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$$anonfun$11$$anonfun$apply$5.class -> lastModified(1492098060728)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$$anonfun$11.class -> lastModified(1492098060726)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$$anonfun$12.class -> lastModified(1492098060730)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$$anonfun$13$$anonfun$apply$6.class -> lastModified(1492098060735)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$$anonfun$13.class -> lastModified(1492098060733)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$$anonfun$14.class -> lastModified(1492098060738)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$$anonfun$6.class -> lastModified(1492098060740)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$$anonfun$7.class -> lastModified(1492098060742)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$$anonfun$8.class -> lastModified(1492098060744)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$$anonfun$9.class -> lastModified(1492098060747)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$$anonfun$qcUtils$runAllQC$$addDependencies$1$1.class -> lastModified(1492098060749)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$$anonfun$qcUtils$runAllQC$$addDependencies$1$2.class -> lastModified(1492098060751)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$$anonfun$runOnSeqFile$1.class -> lastModified(1492098060753)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$$anonfun$runOnSeqFile$2.class -> lastModified(1492098060756)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$$anonfun$runOnSeqFile$3.class -> lastModified(1492098060758)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$.class -> lastModified(1492098060709)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$allQC_runner$$anonfun$2.class -> lastModified(1492098060765)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$allQC_runner$$anonfun$3.class -> lastModified(1492098060767)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$allQC_runner$$anonfun$4.class -> lastModified(1492098060769)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$allQC_runner$$anonfun$5.class -> lastModified(1492098060772)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$allQC_runner.class -> lastModified(1492098060762)
-C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC.class -> lastModified(1492098060700)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$$anonfun$1.class -> lastModified(1502470279740)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$$anonfun$10$$anonfun$apply$1.class -> lastModified(1502470279748)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$$anonfun$10$$anonfun$apply$2.class -> lastModified(1502470279751)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$$anonfun$10$$anonfun$apply$3.class -> lastModified(1502470279755)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$$anonfun$10$$anonfun$apply$4.class -> lastModified(1502470279759)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$$anonfun$10.class -> lastModified(1502470279744)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$$anonfun$11$$anonfun$apply$5.class -> lastModified(1502470279766)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$$anonfun$11.class -> lastModified(1502470279763)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$$anonfun$12.class -> lastModified(1502470279769)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$$anonfun$13$$anonfun$apply$6.class -> lastModified(1502470279777)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$$anonfun$13.class -> lastModified(1502470279773)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$$anonfun$14.class -> lastModified(1502470279782)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$$anonfun$6.class -> lastModified(1502470279786)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$$anonfun$7.class -> lastModified(1502470279789)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$$anonfun$8.class -> lastModified(1502470279792)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$$anonfun$9.class -> lastModified(1502470279796)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$$anonfun$qcUtils$runAllQC$$addDependencies$1$1.class -> lastModified(1502470279800)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$$anonfun$qcUtils$runAllQC$$addDependencies$1$2.class -> lastModified(1502470279803)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$$anonfun$runOnSeqFile$1.class -> lastModified(1502470279807)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$$anonfun$runOnSeqFile$2.class -> lastModified(1502470279817)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$$anonfun$runOnSeqFile$3.class -> lastModified(1502470279820)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$.class -> lastModified(1502470279737)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$allQC_runner$$anonfun$2.class -> lastModified(1502470279837)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$allQC_runner$$anonfun$3.class -> lastModified(1502470279840)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$allQC_runner$$anonfun$4.class -> lastModified(1502470279844)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$allQC_runner$$anonfun$5.class -> lastModified(1502470279848)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC$allQC_runner.class -> lastModified(1502470279832)
+C:\Users\hartleys\workspace\HartleyUtils\bin\qcUtils\runAllQC.class -> lastModified(1502470279697)
 C:\Users\hartleys\workspace\HartleyUtils\bin\runner\helpDocs$$anonfun$getGeneralHelp$1.class -> lastModified(1492098060782)
 C:\Users\hartleys\workspace\HartleyUtils\bin\runner\helpDocs$$anonfun$getGeneralHelp$2.class -> lastModified(1492098060784)
 C:\Users\hartleys\workspace\HartleyUtils\bin\runner\helpDocs$$anonfun$writeMarkdownHelp$1.class -> lastModified(1492098060786)
@@ -4583,28 +4595,28 @@ C:\Users\hartleys\workspace\HartleyUtils\bin\runner\helpDocs$$anonfun$writeMarkd
 C:\Users\hartleys\workspace\HartleyUtils\bin\runner\helpDocs$$anonfun$writeMarkdownHelp$4.class -> lastModified(1492098060792)
 C:\Users\hartleys\workspace\HartleyUtils\bin\runner\helpDocs$.class -> lastModified(1492098060775)
 C:\Users\hartleys\workspace\HartleyUtils\bin\runner\helpDocs.class -> lastModified(1492098060778)
-C:\Users\hartleys\workspace\HartleyUtils\bin\runner\runner$$anonfun$1.class -> lastModified(1492098060799)
-C:\Users\hartleys\workspace\HartleyUtils\bin\runner\runner$$anonfun$10.class -> lastModified(1492098060800)
-C:\Users\hartleys\workspace\HartleyUtils\bin\runner\runner$$anonfun$11.class -> lastModified(1492098060802)
-C:\Users\hartleys\workspace\HartleyUtils\bin\runner\runner$$anonfun$12.class -> lastModified(1492098060804)
-C:\Users\hartleys\workspace\HartleyUtils\bin\runner\runner$$anonfun$13.class -> lastModified(1492098060806)
-C:\Users\hartleys\workspace\HartleyUtils\bin\runner\runner$$anonfun$14$$anonfun$apply$1.class -> lastModified(1492098060809)
-C:\Users\hartleys\workspace\HartleyUtils\bin\runner\runner$$anonfun$14.class -> lastModified(1492098060808)
-C:\Users\hartleys\workspace\HartleyUtils\bin\runner\runner$$anonfun$15.class -> lastModified(1492098060811)
-C:\Users\hartleys\workspace\HartleyUtils\bin\runner\runner$$anonfun$2.class -> lastModified(1492098060813)
-C:\Users\hartleys\workspace\HartleyUtils\bin\runner\runner$$anonfun$3.class -> lastModified(1492098060815)
-C:\Users\hartleys\workspace\HartleyUtils\bin\runner\runner$$anonfun$4.class -> lastModified(1492098060816)
-C:\Users\hartleys\workspace\HartleyUtils\bin\runner\runner$$anonfun$5.class -> lastModified(1492098060818)
-C:\Users\hartleys\workspace\HartleyUtils\bin\runner\runner$$anonfun$6.class -> lastModified(1492098060820)
-C:\Users\hartleys\workspace\HartleyUtils\bin\runner\runner$$anonfun$7.class -> lastModified(1492098060822)
-C:\Users\hartleys\workspace\HartleyUtils\bin\runner\runner$$anonfun$8.class -> lastModified(1492098060824)
-C:\Users\hartleys\workspace\HartleyUtils\bin\runner\runner$$anonfun$9.class -> lastModified(1492098060825)
-C:\Users\hartleys\workspace\HartleyUtils\bin\runner\runner$.class -> lastModified(1492098060797)
-C:\Users\hartleys\workspace\HartleyUtils\bin\runner\runner.class -> lastModified(1492098060794)
+C:\Users\hartleys\workspace\HartleyUtils\bin\runner\runner$$anonfun$1.class -> lastModified(1502470279871)
+C:\Users\hartleys\workspace\HartleyUtils\bin\runner\runner$$anonfun$10.class -> lastModified(1502470279874)
+C:\Users\hartleys\workspace\HartleyUtils\bin\runner\runner$$anonfun$11.class -> lastModified(1502470279878)
+C:\Users\hartleys\workspace\HartleyUtils\bin\runner\runner$$anonfun$12.class -> lastModified(1502470279881)
+C:\Users\hartleys\workspace\HartleyUtils\bin\runner\runner$$anonfun$13.class -> lastModified(1502470279884)
+C:\Users\hartleys\workspace\HartleyUtils\bin\runner\runner$$anonfun$14$$anonfun$apply$1.class -> lastModified(1502470279890)
+C:\Users\hartleys\workspace\HartleyUtils\bin\runner\runner$$anonfun$14.class -> lastModified(1502470279887)
+C:\Users\hartleys\workspace\HartleyUtils\bin\runner\runner$$anonfun$15.class -> lastModified(1502470279893)
+C:\Users\hartleys\workspace\HartleyUtils\bin\runner\runner$$anonfun$2.class -> lastModified(1502470279896)
+C:\Users\hartleys\workspace\HartleyUtils\bin\runner\runner$$anonfun$3.class -> lastModified(1502470279899)
+C:\Users\hartleys\workspace\HartleyUtils\bin\runner\runner$$anonfun$4.class -> lastModified(1502470279901)
+C:\Users\hartleys\workspace\HartleyUtils\bin\runner\runner$$anonfun$5.class -> lastModified(1502470279904)
+C:\Users\hartleys\workspace\HartleyUtils\bin\runner\runner$$anonfun$6.class -> lastModified(1502470279907)
+C:\Users\hartleys\workspace\HartleyUtils\bin\runner\runner$$anonfun$7.class -> lastModified(1502470279911)
+C:\Users\hartleys\workspace\HartleyUtils\bin\runner\runner$$anonfun$8.class -> lastModified(1502470279914)
+C:\Users\hartleys\workspace\HartleyUtils\bin\runner\runner$$anonfun$9.class -> lastModified(1502470279918)
+C:\Users\hartleys\workspace\HartleyUtils\bin\runner\runner$.class -> lastModified(1502470279868)
+C:\Users\hartleys\workspace\HartleyUtils\bin\runner\runner.class -> lastModified(1502470279852)
 source stamps:
 53 items
-C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\addNovelSplices.scala -> hash(2e4b3f66bb9870000b2c8776e7e8db47594c90c8)
-C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\bamToWiggle.scala -> hash(7698a244132840fe1d9e5be8db5b64a6022aded3)
+C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\addNovelSplices.scala -> hash(73dc62f7effaeb3625f865c19f2478650bca3c94)
+C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\bamToWiggle.scala -> hash(22568f0143f2bb55d20b91d29142db46626a780b)
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\convertSoftToHardClipping.scala -> hash(f3175615439371e8ad0cb602340837cb31fe0d11)
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\convertSpliceCountsToBed.scala -> hash(697ffe92ad2989f65718205108bae905008266e2)
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\generatePlotsWithR.scala -> hash(7e64264d922e00da147c00ab7baafb1f9b2a9882)
@@ -4616,15 +4628,15 @@ C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\make
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\makeSummaryTracks.scala -> hash(12aaaa8b85e1635eac2666cccda9af4b4ff0d888)
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\mergeQcOutput.scala -> hash(dd5a606b6d596e99458f3edc3928f12edf6f7442)
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\mergeSpliceBed.scala -> hash(35f73a4b23382bffa1b0f1b97f3d9a4d403bc7cb)
-C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\prepFlatGtfFile.scala -> hash(698fc305406299b83e9626877a5f2741994f21fc)
+C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\prepFlatGtfFile.scala -> hash(334fb7d14c10221563e243c91c74686d83386d6f)
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\runFeatureComboCt.scala -> hash(1a63ad92aa8e9bc9f91cac5c37a5ff1719ceb35c)
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\SumWigglesFast.scala -> hash(4ed6c924e17216d6c1c54b32aec3a0c3997b88d9)
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalTests\readWriteRaceTest.scala -> hash(c14cac59d3d3c968328256c8002cb709197cd10b)
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\commandLineUI.scala -> hash(296fcfc7dec8618f1ef00ba5833bcaf601cd6421)
-C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\commonSeqUtils.scala -> hash(c393650a16535687fbe4be32145d22114e2e6613)
+C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\commonSeqUtils.scala -> hash(debdba49332da1df7e4ed237d88248f34d50f0cb)
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\fileUtils.scala -> hash(0948388d0cb05616eb6e1094c9bee49f100edceb)
-C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\genomicAnnoUtils.scala -> hash(52700e3da57e239cb554658d5401a87d89eadd89)
-C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\genomicUtils.scala -> hash(31f0745801f63805d11c5286fc302847dbafa403)
+C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\genomicAnnoUtils.scala -> hash(eec244376ffccbec4b3e317b4cfd70bca47ee5e4)
+C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\genomicUtils.scala -> hash(c042e607cab11c64fd64388ce20a457ae0ace8a0)
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\GtfTool.scala -> hash(b0744737cda895f4ff6091c017df8cd95a751f33)
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\optionHolder.scala -> hash(793f7be4b6f4962719c5b2a82bf9fd0b10ff4ba9)
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\Reporter.scala -> hash(934c42730583016029a8d49425ce5617a78cb1fc)
@@ -4637,14 +4649,14 @@ C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\qcUtils\fqcStdUtils.scal
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\qcUtils\fqcUtility.scala -> hash(1aa1627122f276794074307e1198ff13efccc97a)
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\qcUtils\genUtility.scala -> hash(52752b4e506242cff380e62e2ecbb9620673c414)
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\qcUtils\qcChromCount.scala -> hash(d083475cfa295c26cf00460df39d1062da7e6f92)
-C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\qcUtils\qcCigarDistribution.scala -> hash(75cedadc1024306dc8d66edc1c1cc5b272312815)
+C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\qcUtils\qcCigarDistribution.scala -> hash(be382738b1ca9dfbc98ac8fea562529a60bf6254)
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\qcUtils\qcCigarLocusCounts.scala -> hash(20cb783cc95a14664a9a457370f1380f81a1baf5)
-C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\qcUtils\qcCigarMatch.scala -> hash(8eabaeeb4962c2891f8bd4bdbfa132e281ace769)
-C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\qcUtils\qcFeatureComboCt.scala -> hash(62a3018a281aeaa0aa318b949e175de1e848f0e5)
+C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\qcUtils\qcCigarMatch.scala -> hash(5be84aabeb423f37cd61c1dbd5d74b46a9b14bc4)
+C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\qcUtils\qcFeatureComboCt.scala -> hash(92f6e7e25350d9970e81089d8dbf75d19ff444f5)
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\qcUtils\qcGCContentCount.scala -> hash(1cf7cef4fe612019cbba05d80cd46e05ed9b9ba2)
-C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\qcUtils\qcGetGeneCounts.scala -> hash(4f35cf35c7d24dba9a453a2e43adc6705e825304)
-C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\qcUtils\qcGtfAnnotationBuilder.scala -> hash(4731537a21691831043893608f25b8b8977d5a82)
-C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\qcUtils\qcInnerDistance.scala -> hash(4814ceb7b68aec3081a22d09ff66fd26c699a7fc)
+C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\qcUtils\qcGetGeneCounts.scala -> hash(0361d56db3d9d186eb589f484cd0e13ae1a7a257)
+C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\qcUtils\qcGtfAnnotationBuilder.scala -> hash(b68f6021b07b9bc27a1b6e7f640268bc5b67369c)
+C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\qcUtils\qcInnerDistance.scala -> hash(64f8b5f3d01135dde4a5ef46b64056830f5f464d)
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\qcUtils\qcJunctionCounts.scala -> hash(ff9241d82e632a3190f53961472bf7597f6d994e)
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\qcUtils\qcMinorUtils.scala -> hash(275d81a215e81d51401c95969f449e898a2016e9)
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\qcUtils\qcNVC.scala -> hash(235318a055610434d2c6cce8b125060e3f7a8a5b)
@@ -4664,14 +4676,14 @@ C:\Users\hartleys\workspace\HartleyUtils\lib\sam-1.113.jar -> lastModified(14749
 class names:
 3 items
 C:\Program Files\Java\jre1.8.0_101\lib\rt.jar -> java.lang.Object
-C:\Users\hartleys\Documents\software-local\scala-SDK-4.4.1-vfinal-2.11-win32.win32.x86_64\eclipse\plugins\org.scala-lang.scala-library_2.11.8.v20160304-115712-1706a37eb8.jar -> scala.Predef$
-C:\Users\hartleys\workspace\HartleyUtils\lib\sam-1.113.jar -> net.sf.samtools.SAMFileReader
+C:\Users\hartleys\Documents\software-local\scala-SDK-4.4.1-vfinal-2.11-win32.win32.x86_64\eclipse\plugins\org.scala-lang.scala-library_2.11.8.v20160304-115712-1706a37eb8.jar -> scala.collection.generic.GenMapFactory
+C:\Users\hartleys\workspace\HartleyUtils\lib\sam-1.113.jar -> net.sf.samtools.SAMRecord
 internal apis:
 53 items
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\addNovelSplices.scala -> 
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
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\bamToWiggle.scala -> 
-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
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\convertSoftToHardClipping.scala -> 
 rO0ABXNyABB4c2J0aS5hcGkuU291cmNlFlpwRASfbtoCAAZJAAdhcGlIYXNoWgAIaGFzTWFjcm9MABhfaW50ZXJuYWxPbmx5X25hbWVIYXNoZXN0ACRMeHNidGkvYXBpL19pbnRlcm5hbE9ubHlfTmFtZUhhc2hlcztMAANhcGl0ABVMeHNidGkvYXBpL1NvdXJjZUFQSTtMAAtjb21waWxhdGlvbnQAF0x4c2J0aS9hcGkvQ29tcGlsYXRpb247WwAEaGFzaHQAAltCeHDzSlDwAHNyACJ4c2J0aS5hcGkuX2ludGVybmFsT25seV9OYW1lSGFzaGVzVNq+mfrU7EwCAAJbAA9pbXBsaWNpdE1lbWJlcnN0ACNbTHhzYnRpL2FwaS9faW50ZXJuYWxPbmx5X05hbWVIYXNoO1sADnJlZ3VsYXJNZW1iZXJzcQB+AAd4cHVyACNbTHhzYnRpLmFwaS5faW50ZXJuYWxPbmx5X05hbWVIYXNoO0lagLbdlov0AgAAeHAAAAAAdXEAfgAJAAAAAHNyABN4c2J0aS5hcGkuU291cmNlQVBJuV6n+SkjOKQCAAJbAAtkZWZpbml0aW9uc3QAF1tMeHNidGkvYXBpL0RlZmluaXRpb247WwAIcGFja2FnZXN0ABRbTHhzYnRpL2FwaS9QYWNrYWdlO3hwdXIAF1tMeHNidGkuYXBpLkRlZmluaXRpb247iMlc57TjXg4CAAB4cAAAAAFzcgATeHNidGkuYXBpLkNsYXNzTGlrZYM0HKHfsJdsAgAETAAOZGVmaW5pdGlvblR5cGV0ABpMeHNidGkvYXBpL0RlZmluaXRpb25UeXBlO1sAEHNhdmVkQW5ub3RhdGlvbnN0ABNbTGphdmEvbGFuZy9TdHJpbmc7TAAIc2VsZlR5cGV0ABBMeHNidGkvYXBpL0xhenk7TAAJc3RydWN0dXJlcQB+ABV4cgAheHNidGkuYXBpLlBhcmFtZXRlcml6ZWREZWZpbml0aW9u+RFusdVQPOICAAFbAA50eXBlUGFyYW1ldGVyc3QAGltMeHNidGkvYXBpL1R5cGVQYXJhbWV0ZXI7eHIAFHhzYnRpLmFwaS5EZWZpbml0aW9uhyob6HFC40YCAARMAAZhY2Nlc3N0ABJMeHNidGkvYXBpL0FjY2VzcztbAAthbm5vdGF0aW9uc3QAF1tMeHNidGkvYXBpL0Fubm90YXRpb247TAAJbW9kaWZpZXJzdAAVTHhzYnRpL2FwaS9Nb2RpZmllcnM7TAAEbmFtZXQAEkxqYXZhL2xhbmcvU3RyaW5nO3hwc3IAEHhzYnRpLmFwaS5QdWJsaWO6WD2ubC1gQgIAAHhyABB4c2J0aS5hcGkuQWNjZXNz3WKa+B1jMUgCAAB4cHVyABdbTHhzYnRpLmFwaS5Bbm5vdGF0aW9uO+uX6xkQ9o1IAgAAeHAAAAAAc3IAE3hzYnRpLmFwaS5Nb2RpZmllcnPHERMhaZzcJAIAAUIABWZsYWdzeHAAdAAtZmlsZUNvbnZlcnNpb25VdGlscy5jb252ZXJ0U29mdFRvSGFyZENsaXBwaW5ndXIAGltMeHNidGkuYXBpLlR5cGVQYXJhbWV0ZXI72W0mDyid8rYCAAB4cAAAAAB+cgAYeHNidGkuYXBpLkRlZmluaXRpb25UeXBlAAAAAAAAAAASAAB4cgAOamF2YS5sYW5nLkVudW0AAAAAAAAAABIAAHhwdAAGTW9kdWxldXIAE1tMamF2YS5sYW5nLlN0cmluZzut0lbn6R17RwIAAHhwAAAAAHNyABN4c2J0aS5TYWZlTGF6eSRJbXBsO5FPEfRFTMkCAANaAAhiaXRtYXAkMEwAAl90dAASTGphdmEvbGFuZy9PYmplY3Q7TAAEZXZhbHQAEUxzY2FsYS9GdW5jdGlvbjA7eHIAFnhzYnRpLmFwaS5BYnN0cmFjdExhennTd7UBX7vnoAIAAHhwAHBzcgAgeHNidGkuU2FmZUxhenkkJGFub25mdW4kc3RyaWN0JDEAAAAAAAAAAAIAAUwAB3ZhbHVlJDFxAH4AL3hwc3IAE3hzYnRpLmFwaS5FbXB0eVR5cGW8/Z5GSTuJJAIAAHhyABR4c2J0aS5hcGkuU2ltcGxlVHlwZXJ4YoghI79AAgAAeHIADnhzYnRpLmFwaS5UeXBlP2rZIRZJqsoCAAB4cHNxAH4ALgBwc3EAfgAzc3IAE3hzYnRpLmFwaS5TdHJ1Y3R1cmWpqvmAk2/YAAIAA0wACGRlY2xhcmVkcQB+ABVMAAlpbmhlcml0ZWRxAH4AFUwAB3BhcmVudHNxAH4AFXhxAH4AN3NxAH4ALgBwc3EAfgAzdXEAfgAQAAAAAHNxAH4ALgBwc3EAfgAzdXEAfgAQAAAAAHNxAH4ALgBwc3EAfgAzdXIAEVtMeHNidGkuYXBpLlR5cGU7dP+lWnv56UECAAB4cAAAAAJzcgAUeHNidGkuYXBpLlByb2plY3Rpb27z0o1U6UWkLQIAAkwAAmlkcQB+ABxMAAZwcmVmaXh0ABZMeHNidGkvYXBpL1NpbXBsZVR5cGU7eHEAfgA2dAAGT2JqZWN0c3IAE3hzYnRpLmFwaS5TaW5nbGV0b278p1/4z1bkRgIAAUwABHBhdGh0ABBMeHNidGkvYXBpL1BhdGg7eHEAfgA2c3IADnhzYnRpLmFwaS5QYXRomz1cCM6lJ4QCAAFbAApjb21wb25lbnRzdAAaW0x4c2J0aS9hcGkvUGF0aENvbXBvbmVudDt4cHVyABpbTHhzYnRpLmFwaS5QYXRoQ29tcG9uZW50O0PaCXQtZxZ0AgAAeHAAAAADc3IADHhzYnRpLmFwaS5JZJgybIs3U8RAAgABTAACaWRxAH4AHHhyABd4c2J0aS5hcGkuUGF0aENvbXBvbmVudF+aIlsuhp+8AgAAeHB0AARqYXZhc3EAfgBTdAAEbGFuZ3NyAA54c2J0aS5hcGkuVGhpc9sJ7abMWkBcAgAAeHEAfgBUc3EAfgBHdAADQW55c3EAfgBLc3EAfgBOdXEAfgBRAAAAAnNxAH4AU3QABXNjYWxhcQB+AFp1cgAUW0x4c2J0aS5hcGkuUGFja2FnZTtbExk3cKcnoQIAAHhwAAAAAXNyABF4c2J0aS5hcGkuUGFja2FnZX5Zj/auzjlYAgABTAAEbmFtZXEAfgAceHB0ABNmaWxlQ29udmVyc2lvblV0aWxzc3IAFXhzYnRpLmFwaS5Db21waWxhdGlvbu364MNq6KBCAgACSgAJc3RhcnRUaW1lWwAHb3V0cHV0c3QAGltMeHNidGkvYXBpL091dHB1dFNldHRpbmc7eHAAAAFbZ/lGEXVyABpbTHhzYnRpLmFwaS5PdXRwdXRTZXR0aW5nO39qwvOnh6VCAgAAeHAAAAABc3IAF3hzYnRpLmFwaS5PdXRwdXRTZXR0aW5netmaR3T7HXsCAAJMAA9vdXRwdXREaXJlY3RvcnlxAH4AHEwAD3NvdXJjZURpcmVjdG9yeXEAfgAceHB0ACxDOlxVc2Vyc1xoYXJ0bGV5c1x3b3Jrc3BhY2VcSGFydGxleVV0aWxzXGJpbnQAN0M6XFVzZXJzXGhhcnRsZXlzXHdvcmtzcGFjZVxIYXJ0bGV5VXRpbHNcc3JjXG1haW5cc2NhbGF1cgACW0Ks8xf4BghU4AIAAHhwAAAAFPMXVhVDk3HorQy2AjQIN8sx/g0R
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\convertSpliceCountsToBed.scala -> 
@@ -4695,7 +4707,7 @@ rO0ABXNyABB4c2J0aS5hcGkuU291cmNlFlpwRASfbtoCAAZJAAdhcGlIYXNoWgAIaGFzTWFjcm9MABhf
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\mergeSpliceBed.scala -> 
 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
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\prepFlatGtfFile.scala -> 
-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
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\runFeatureComboCt.scala -> 
 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
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\fileConversionUtils\SumWigglesFast.scala -> 
@@ -4705,13 +4717,13 @@ rO0ABXNyABB4c2J0aS5hcGkuU291cmNlFlpwRASfbtoCAAZJAAdhcGlIYXNoWgAIaGFzTWFjcm9MABhf
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\commandLineUI.scala -> 
 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
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\commonSeqUtils.scala -> 
-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
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\fileUtils.scala -> 
 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
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\genomicAnnoUtils.scala -> 
-rO0ABXNyABB4c2J0aS5hcGkuU291cmNlFlpwRASfbtoCAAZJAAdhcGlIYXNoWgAIaGFzTWFjcm9MABhfaW50ZXJuYWxPbmx5X25hbWVIYXNoZXN0ACRMeHNidGkvYXBpL19pbnRlcm5hbE9ubHlfTmFtZUhhc2hlcztMAANhcGl0ABVMeHNidGkvYXBpL1NvdXJjZUFQSTtMAAtjb21waWxhdGlvbnQAF0x4c2J0aS9hcGkvQ29tcGlsYXRpb247WwAEaGFzaHQAAltCeHAa0byAAHNyACJ4c2J0aS5hcGkuX2ludGVybmFsT25seV9OYW1lSGFzaGVzVNq+mfrU7EwCAAJbAA9pbXBsaWNpdE1lbWJlcnN0ACNbTHhzYnRpL2FwaS9faW50ZXJuYWxPbmx5X05hbWVIYXNoO1sADnJlZ3VsYXJNZW1iZXJzcQB+AAd4cHVyACNbTHhzYnRpLmFwaS5faW50ZXJuYWxPbmx5X05hbWVIYXNoO0lagLbdlov0AgAAeHAAAAAAdXEAfgAJAAAAAHNyABN4c2J0aS5hcGkuU291cmNlQVBJuV6n+SkjOKQCAAJbAAtkZWZpbml0aW9uc3QAF1tMeHNidGkvYXBpL0RlZmluaXRpb247WwAIcGFja2FnZXN0ABRbTHhzYnRpL2FwaS9QYWNrYWdlO3hwdXIAF1tMeHNidGkuYXBpLkRlZmluaXRpb247iMlc57TjXg4CAAB4cAAAAAFzcgATeHNidGkuYXBpLkNsYXNzTGlrZYM0HKHfsJdsAgAETAAOZGVmaW5pdGlvblR5cGV0ABpMeHNidGkvYXBpL0RlZmluaXRpb25UeXBlO1sAEHNhdmVkQW5ub3RhdGlvbnN0ABNbTGphdmEvbGFuZy9TdHJpbmc7TAAIc2VsZlR5cGV0ABBMeHNidGkvYXBpL0xhenk7TAAJc3RydWN0dXJlcQB+ABV4cgAheHNidGkuYXBpLlBhcmFtZXRlcml6ZWREZWZpbml0aW9u+RFusdVQPOICAAFbAA50eXBlUGFyYW1ldGVyc3QAGltMeHNidGkvYXBpL1R5cGVQYXJhbWV0ZXI7eHIAFHhzYnRpLmFwaS5EZWZpbml0aW9uhyob6HFC40YCAARMAAZhY2Nlc3N0ABJMeHNidGkvYXBpL0FjY2VzcztbAAthbm5vdGF0aW9uc3QAF1tMeHNidGkvYXBpL0Fubm90YXRpb247TAAJbW9kaWZpZXJzdAAVTHhzYnRpL2FwaS9Nb2RpZmllcnM7TAAEbmFtZXQAEkxqYXZhL2xhbmcvU3RyaW5nO3hwc3IAEHhzYnRpLmFwaS5QdWJsaWO6WD2ubC1gQgIAAHhyABB4c2J0aS5hcGkuQWNjZXNz3WKa+B1jMUgCAAB4cHVyABdbTHhzYnRpLmFwaS5Bbm5vdGF0aW9uO+uX6xkQ9o1IAgAAeHAAAAAAc3IAE3hzYnRpLmFwaS5Nb2RpZmllcnPHERMhaZzcJAIAAUIABWZsYWdzeHAAdAAeaW50ZXJuYWxVdGlscy5nZW5vbWljQW5ub1V0aWxzdXIAGltMeHNidGkuYXBpLlR5cGVQYXJhbWV0ZXI72W0mDyid8rYCAAB4cAAAAAB+cgAYeHNidGkuYXBpLkRlZmluaXRpb25UeXBlAAAAAAAAAAASAAB4cgAOamF2YS5sYW5nLkVudW0AAAAAAAAAABIAAHhwdAAGTW9kdWxldXIAE1tMamF2YS5sYW5nLlN0cmluZzut0lbn6R17RwIAAHhwAAAAAHNyABN4c2J0aS5TYWZlTGF6eSRJbXBsO5FPEfRFTMkCAANaAAhiaXRtYXAkMEwAAl90dAASTGphdmEvbGFuZy9PYmplY3Q7TAAEZXZhbHQAEUxzY2FsYS9GdW5jdGlvbjA7eHIAFnhzYnRpLmFwaS5BYnN0cmFjdExhennTd7UBX7vnoAIAAHhwAHBzcgAgeHNidGkuU2FmZUxhenkkJGFub25mdW4kc3RyaWN0JDEAAAAAAAAAAAIAAUwAB3ZhbHVlJDFxAH4AL3hwc3IAE3hzYnRpLmFwaS5FbXB0eVR5cGW8/Z5GSTuJJAIAAHhyABR4c2J0aS5hcGkuU2ltcGxlVHlwZXJ4YoghI79AAgAAeHIADnhzYnRpLmFwaS5UeXBlP2rZIRZJqsoCAAB4cHNxAH4ALgBwc3EAfgAzc3IAE3hzYnRpLmFwaS5TdHJ1Y3R1cmWpqvmAk2/YAAIAA0wACGRlY2xhcmVkcQB+ABVMAAlpbmhlcml0ZWRxAH4AFUwAB3BhcmVudHNxAH4AFXhxAH4AN3NxAH4ALgBwc3EAfgAzdXEAfgAQAAAAAHNxAH4ALgBwc3EAfgAzdXEAfgAQAAAAAHNxAH4ALgBwc3EAfgAzdXIAEVtMeHNidGkuYXBpLlR5cGU7dP+lWnv56UECAAB4cAAAAAJzcgAUeHNidGkuYXBpLlByb2plY3Rpb27z0o1U6UWkLQIAAkwAAmlkcQB+ABxMAAZwcmVmaXh0ABZMeHNidGkvYXBpL1NpbXBsZVR5cGU7eHEAfgA2dAAGT2JqZWN0c3IAE3hzYnRpLmFwaS5TaW5nbGV0b278p1/4z1bkRgIAAUwABHBhdGh0ABBMeHNidGkvYXBpL1BhdGg7eHEAfgA2c3IADnhzYnRpLmFwaS5QYXRomz1cCM6lJ4QCAAFbAApjb21wb25lbnRzdAAaW0x4c2J0aS9hcGkvUGF0aENvbXBvbmVudDt4cHVyABpbTHhzYnRpLmFwaS5QYXRoQ29tcG9uZW50O0PaCXQtZxZ0AgAAeHAAAAADc3IADHhzYnRpLmFwaS5JZJgybIs3U8RAAgABTAACaWRxAH4AHHhyABd4c2J0aS5hcGkuUGF0aENvbXBvbmVudF+aIlsuhp+8AgAAeHB0AARqYXZhc3EAfgBTdAAEbGFuZ3NyAA54c2J0aS5hcGkuVGhpc9sJ7abMWkBcAgAAeHEAfgBUc3EAfgBHdAADQW55c3EAfgBLc3EAfgBOdXEAfgBRAAAAAnNxAH4AU3QABXNjYWxhcQB+AFp1cgAUW0x4c2J0aS5hcGkuUGFja2FnZTtbExk3cKcnoQIAAHhwAAAAAXNyABF4c2J0aS5hcGkuUGFja2FnZX5Zj/auzjlYAgABTAAEbmFtZXEAfgAceHB0AA1pbnRlcm5hbFV0aWxzc3IAFXhzYnRpLmFwaS5Db21waWxhdGlvbu364MNq6KBCAgACSgAJc3RhcnRUaW1lWwAHb3V0cHV0c3QAGltMeHNidGkvYXBpL091dHB1dFNldHRpbmc7eHAAAAFbZ/lGEXVyABpbTHhzYnRpLmFwaS5PdXRwdXRTZXR0aW5nO39qwvOnh6VCAgAAeHAAAAABc3IAF3hzYnRpLmFwaS5PdXRwdXRTZXR0aW5netmaR3T7HXsCAAJMAA9vdXRwdXREaXJlY3RvcnlxAH4AHEwAD3NvdXJjZURpcmVjdG9yeXEAfgAceHB0ACxDOlxVc2Vyc1xoYXJ0bGV5c1x3b3Jrc3BhY2VcSGFydGxleVV0aWxzXGJpbnQAN0M6XFVzZXJzXGhhcnRsZXlzXHdvcmtzcGFjZVxIYXJ0bGV5VXRpbHNcc3JjXG1haW5cc2NhbGF1cgACW0Ks8xf4BghU4AIAAHhwAAAAFFJwDj2lfiOctVRljVQBqH2J6t2J
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 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\genomicUtils.scala -> 
-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 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\GtfTool.scala -> 
 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
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\internalUtils\optionHolder.scala -> 
@@ -4737,21 +4749,21 @@ rO0ABXNyABB4c2J0aS5hcGkuU291cmNlFlpwRASfbtoCAAZJAAdhcGlIYXNoWgAIaGFzTWFjcm9MABhf
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\qcUtils\qcChromCount.scala -> 
 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
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\qcUtils\qcCigarDistribution.scala -> 
-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
+rO0ABXNyABB4c2J0aS5hcGkuU291cmNlFlpwRASfbtoCAAZJAAdhcGlIYXNoWgAIaGFzTWFjcm9MABhfaW50ZXJuYWxPbmx5X25hbWVIYXNoZXN0ACRMeHNidGkvYXBpL19pbnRlcm5hbE9ubHlfTmFtZUhhc2hlcztMAANhcGl0ABVMeHNidGkvYXBpL1NvdXJjZUFQSTtMAAtjb21waWxhdGlvbnQAF0x4c2J0aS9hcGkvQ29tcGlsYXRpb247WwAEaGFzaHQAAltCeHAr4HWvAHNyACJ4c2J0aS5hcGkuX2ludGVybmFsT25seV9OYW1lSGFzaGVzVNq+mfrU7EwCAAJbAA9pbXBsaWNpdE1lbWJlcnN0ACNbTHhzYnRpL2FwaS9faW50ZXJuYWxPbmx5X05hbWVIYXNoO1sADnJlZ3VsYXJNZW1iZXJzcQB+AAd4cHVyACNbTHhzYnRpLmFwaS5faW50ZXJuYWxPbmx5X05hbWVIYXNoO0lagLbdlov0AgAAeHAAAAAAdXEAfgAJAAAAAHNyABN4c2J0aS5hcGkuU291cmNlQVBJuV6n+SkjOKQCAAJbAAtkZWZpbml0aW9uc3QAF1tMeHNidGkvYXBpL0RlZmluaXRpb247WwAIcGFja2FnZXN0ABRbTHhzYnRpL2FwaS9QYWNrYWdlO3hwdXIAF1tMeHNidGkuYXBpLkRlZmluaXRpb247iMlc57TjXg4CAAB4cAAAAAJzcgATeHNidGkuYXBpLkNsYXNzTGlrZYM0HKHfsJdsAgAETAAOZGVmaW5pdGlvblR5cGV0ABpMeHNidGkvYXBpL0RlZmluaXRpb25UeXBlO1sAEHNhdmVkQW5ub3RhdGlvbnN0ABNbTGphdmEvbGFuZy9TdHJpbmc7TAAIc2VsZlR5cGV0ABBMeHNidGkvYXBpL0xhenk7TAAJc3RydWN0dXJlcQB+ABV4cgAheHNidGkuYXBpLlBhcmFtZXRlcml6ZWREZWZpbml0aW9u+RFusdVQPOICAAFbAA50eXBlUGFyYW1ldGVyc3QAGltMeHNidGkvYXBpL1R5cGVQYXJhbWV0ZXI7eHIAFHhzYnRpLmFwaS5EZWZpbml0aW9uhyob6HFC40YCAARMAAZhY2Nlc3N0ABJMeHNidGkvYXBpL0FjY2VzcztbAAthbm5vdGF0aW9uc3QAF1tMeHNidGkvYXBpL0Fubm90YXRpb247TAAJbW9kaWZpZXJzdAAVTHhzYnRpL2FwaS9Nb2RpZmllcnM7TAAEbmFtZXQAEkxqYXZhL2xhbmcvU3RyaW5nO3hwc3IAEHhzYnRpLmFwaS5QdWJsaWO6WD2ubC1gQgIAAHhyABB4c2J0aS5hcGkuQWNjZXNz3WKa+B1jMUgCAAB4cHVyABdbTHhzYnRpLmFwaS5Bbm5vdGF0aW9uO+uX6xkQ9o1IAgAAeHAAAAAAc3IAE3hzYnRpLmFwaS5Nb2RpZmllcnPHERMhaZzcJAIAAUIABWZsYWdzeHAAdAAbcWNVdGlscy5xY0NpZ2FyRGlzdHJpYnV0aW9udXIAGltMeHNidGkuYXBpLlR5cGVQYXJhbWV0ZXI72W0mDyid8rYCAAB4cAAAAAB+cgAYeHNidGkuYXBpLkRlZmluaXRpb25UeXBlAAAAAAAAAAASAAB4cgAOamF2YS5sYW5nLkVudW0AAAAAAAAAABIAAHhwdAAGTW9kdWxldXIAE1tMamF2YS5sYW5nLlN0cmluZzut0lbn6R17RwIAAHhwAAAAAHNyABN4c2J0aS5TYWZlTGF6eSRJbXBsO5FPEfRFTMkCAANaAAhiaXRtYXAkMEwAAl90dAASTGphdmEvbGFuZy9PYmplY3Q7TAAEZXZhbHQAEUxzY2FsYS9GdW5jdGlvbjA7eHIAFnhzYnRpLmFwaS5BYnN0cmFjdExhennTd7UBX7vnoAIAAHhwAXNyABN4c2J0aS5hcGkuRW1wdHlUeXBlvP2eRkk7iSQCAAB4cgAUeHNidGkuYXBpLlNpbXBsZVR5cGVyeGKIISO/QAIAAHhyAA54c2J0aS5hcGkuVHlwZT9q2SEWSarKAgAAeHBwc3EAfgAuAXNyABN4c2J0aS5hcGkuU3RydWN0dXJlqar5gJNv2AACAANMAAhkZWNsYXJlZHEAfgAVTAAJaW5oZXJpdGVkcQB+ABVMAAdwYXJlbnRzcQB+ABV4cQB+ADVzcQB+AC4BdXEAfgAQAAAAAHBzcQB+AC4BdXEAfgAQAAAAAHBzcQB+AC4BdXIAEVtMeHNidGkuYXBpLlR5cGU7dP+lWnv56UECAAB4cAAAAAJzcgAUeHNidGkuYXBpLlByb2plY3Rpb27z0o1U6UWkLQIAAkwAAmlkcQB+ABxMAAZwcmVmaXh0ABZMeHNidGkvYXBpL1NpbXBsZVR5cGU7eHEAfgA0dAAGT2JqZWN0c3IAE3hzYnRpLmFwaS5TaW5nbGV0b278p1/4z1bkRgIAAUwABHBhdGh0ABBMeHNidGkvYXBpL1BhdGg7eHEAfgA0c3IADnhzYnRpLmFwaS5QYXRomz1cCM6lJ4QCAAFbAApjb21wb25lbnRzdAAaW0x4c2J0aS9hcGkvUGF0aENvbXBvbmVudDt4cHVyABpbTHhzYnRpLmFwaS5QYXRoQ29tcG9uZW50O0PaCXQtZxZ0AgAAeHAAAAADc3IADHhzYnRpLmFwaS5JZJgybIs3U8RAAgABTAACaWRxAH4AHHhyABd4c2J0aS5hcGkuUGF0aENvbXBvbmVudF+aIlsuhp+8AgAAeHB0AARqYXZhc3EAfgBNdAAEbGFuZ3NyAA54c2J0aS5hcGkuVGhpc9sJ7abMWkBcAgAAeHEAfgBOc3EAfgBBdAADQW55c3EAfgBFc3EAfgBIdXEAfgBLAAAAAnNxAH4ATXQABXNjYWxhcQB+AFRwcHNxAH4AEnEAfgAgdXEAfgAhAAAAAHNxAH4AIwB0ABtxY1V0aWxzLnFjQ2lnYXJEaXN0cmlidXRpb251cQB+ACYAAAAAfnEAfgAodAAIQ2xhc3NEZWZ1cQB+ACwAAAAAc3EAfgAuAXEAfgA2cHNxAH4ALgFzcQB+ADhzcQB+AC4BdXEAfgAQAAAAAHBzcQB+AC4BdXEAfgAQAAAAAHBzcQB+AC4BdXEAfgA/AAAABHNyABd4c2J0aS5hcGkuUGFyYW1ldGVyaXplZBZs7mkDybt/AgACTAAIYmFzZVR5cGVxAH4AQlsADXR5cGVBcmd1bWVudHN0ABFbTHhzYnRpL2FwaS9UeXBlO3hxAH4ANHNxAH4AQXQACVFDVXRpbGl0eXNxAH4ARXNxAH4ASHVxAH4ASwAAAAJzcQB+AE10AAdxY1V0aWxzcQB+AFR1cQB+AD8AAAABc3EAfgBBdAAEVW5pdHNxAH4ARXNxAH4ASHVxAH4ASwAAAAJzcQB+AE1xAH4AW3EAfgBUc3EAfgBBdAAKZ2VuVXRpbGl0eXEAfgByc3EAfgBBcQB+AERzcQB+AEVzcQB+AEh1cQB+AEsAAAADc3EAfgBNcQB+AFBzcQB+AE1xAH4AUnEAfgBUc3EAfgBBcQB+AFZxAH4AenBwdXIAFFtMeHNidGkuYXBpLlBhY2thZ2U7WxMZN3CnJ6ECAAB4cAAAAAFzcgAReHNidGkuYXBpLlBhY2thZ2V+WY/2rs45WAIAAUwABG5hbWVxAH4AHHhwdAAHcWNVdGlsc3NyABV4c2J0aS5hcGkuQ29tcGlsYXRpb27t+uDDauigQgIAAkoACXN0YXJ0VGltZVsAB291dHB1dHN0ABpbTHhzYnRpL2FwaS9PdXRwdXRTZXR0aW5nO3hwAAABXzpVacp1cgAaW0x4c2J0aS5hcGkuT3V0cHV0U2V0dGluZzt/asLzp4elQgIAAHhwAAAAAXNyABd4c2J0aS5hcGkuT3V0cHV0U2V0dGluZ3rZmkd0+x17AgACTAAPb3V0cHV0RGlyZWN0b3J5cQB+ABxMAA9zb3VyY2VEaXJlY3RvcnlxAH4AHHhwdAAsQzpcVXNlcnNcaGFydGxleXNcd29ya3NwYWNlXEhhcnRsZXlVdGlsc1xiaW50ADdDOlxVc2Vyc1xoYXJ0bGV5c1x3b3Jrc3BhY2VcSGFydGxleVV0aWxzXHNyY1xtYWluXHNjYWxhdXIAAltCrPMX+AYIVOACAAB4cAAAABS+OCc4scqd+8mKyP6lYlKaYL9iVA==
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\qcUtils\qcCigarLocusCounts.scala -> 
 rO0ABXNyABB4c2J0aS5hcGkuU291cmNlFlpwRASfbtoCAAZJAAdhcGlIYXNoWgAIaGFzTWFjcm9MABhfaW50ZXJuYWxPbmx5X25hbWVIYXNoZXN0ACRMeHNidGkvYXBpL19pbnRlcm5hbE9ubHlfTmFtZUhhc2hlcztMAANhcGl0ABVMeHNidGkvYXBpL1NvdXJjZUFQSTtMAAtjb21waWxhdGlvbnQAF0x4c2J0aS9hcGkvQ29tcGlsYXRpb247WwAEaGFzaHQAAltCeHDx6nrMAHNyACJ4c2J0aS5hcGkuX2ludGVybmFsT25seV9OYW1lSGFzaGVzVNq+mfrU7EwCAAJbAA9pbXBsaWNpdE1lbWJlcnN0ACNbTHhzYnRpL2FwaS9faW50ZXJuYWxPbmx5X05hbWVIYXNoO1sADnJlZ3VsYXJNZW1iZXJzcQB+AAd4cHVyACNbTHhzYnRpLmFwaS5faW50ZXJuYWxPbmx5X05hbWVIYXNoO0lagLbdlov0AgAAeHAAAAAAdXEAfgAJAAAAAHNyABN4c2J0aS5hcGkuU291cmNlQVBJuV6n+SkjOKQCAAJbAAtkZWZpbml0aW9uc3QAF1tMeHNidGkvYXBpL0RlZmluaXRpb247WwAIcGFja2FnZXN0ABRbTHhzYnRpL2FwaS9QYWNrYWdlO3hwdXIAF1tMeHNidGkuYXBpLkRlZmluaXRpb247iMlc57TjXg4CAAB4cAAAAAJzcgATeHNidGkuYXBpLkNsYXNzTGlrZYM0HKHfsJdsAgAETAAOZGVmaW5pdGlvblR5cGV0ABpMeHNidGkvYXBpL0RlZmluaXRpb25UeXBlO1sAEHNhdmVkQW5ub3RhdGlvbnN0ABNbTGphdmEvbGFuZy9TdHJpbmc7TAAIc2VsZlR5cGV0ABBMeHNidGkvYXBpL0xhenk7TAAJc3RydWN0dXJlcQB+ABV4cgAheHNidGkuYXBpLlBhcmFtZXRlcml6ZWREZWZpbml0aW9u+RFusdVQPOICAAFbAA50eXBlUGFyYW1ldGVyc3QAGltMeHNidGkvYXBpL1R5cGVQYXJhbWV0ZXI7eHIAFHhzYnRpLmFwaS5EZWZpbml0aW9uhyob6HFC40YCAARMAAZhY2Nlc3N0ABJMeHNidGkvYXBpL0FjY2VzcztbAAthbm5vdGF0aW9uc3QAF1tMeHNidGkvYXBpL0Fubm90YXRpb247TAAJbW9kaWZpZXJzdAAVTHhzYnRpL2FwaS9Nb2RpZmllcnM7TAAEbmFtZXQAEkxqYXZhL2xhbmcvU3RyaW5nO3hwc3IAEHhzYnRpLmFwaS5QdWJsaWO6WD2ubC1gQgIAAHhyABB4c2J0aS5hcGkuQWNjZXNz3WKa+B1jMUgCAAB4cHVyABdbTHhzYnRpLmFwaS5Bbm5vdGF0aW9uO+uX6xkQ9o1IAgAAeHAAAAAAc3IAE3hzYnRpLmFwaS5Nb2RpZmllcnPHERMhaZzcJAIAAUIABWZsYWdzeHAAdAAacWNVdGlscy5xY0NpZ2FyTG9jdXNDb3VudHN1cgAaW0x4c2J0aS5hcGkuVHlwZVBhcmFtZXRlcjvZbSYPKJ3ytgIAAHhwAAAAAH5yABh4c2J0aS5hcGkuRGVmaW5pdGlvblR5cGUAAAAAAAAAABIAAHhyAA5qYXZhLmxhbmcuRW51bQAAAAAAAAAAEgAAeHB0AAZNb2R1bGV1cgATW0xqYXZhLmxhbmcuU3RyaW5nO63SVufpHXtHAgAAeHAAAAAAc3IAE3hzYnRpLlNhZmVMYXp5JEltcGw7kU8R9EVMyQIAA1oACGJpdG1hcCQwTAACX3R0ABJMamF2YS9sYW5nL09iamVjdDtMAARldmFsdAARTHNjYWxhL0Z1bmN0aW9uMDt4cgAWeHNidGkuYXBpLkFic3RyYWN0TGF6edN3tQFfu+egAgAAeHAAcHNyACB4c2J0aS5TYWZlTGF6eSQkYW5vbmZ1biRzdHJpY3QkMQAAAAAAAAAAAgABTAAHdmFsdWUkMXEAfgAveHBzcgATeHNidGkuYXBpLkVtcHR5VHlwZbz9nkZJO4kkAgAAeHIAFHhzYnRpLmFwaS5TaW1wbGVUeXBlcnhiiCEjv0ACAAB4cgAOeHNidGkuYXBpLlR5cGU/atkhFkmqygIAAHhwc3EAfgAuAHBzcQB+ADNzcgATeHNidGkuYXBpLlN0cnVjdHVyZamq+YCTb9gAAgADTAAIZGVjbGFyZWRxAH4AFUwACWluaGVyaXRlZHEAfgAVTAAHcGFyZW50c3EAfgAVeHEAfgA3c3EAfgAuAHBzcQB+ADN1cQB+ABAAAAAAc3EAfgAuAHBzcQB+ADN1cQB+ABAAAAAAc3EAfgAuAHBzcQB+ADN1cgARW0x4c2J0aS5hcGkuVHlwZTt0/6Vae/npQQIAAHhwAAAAAnNyABR4c2J0aS5hcGkuUHJvamVjdGlvbvPSjVTpRaQtAgACTAACaWRxAH4AHEwABnByZWZpeHQAFkx4c2J0aS9hcGkvU2ltcGxlVHlwZTt4cQB+ADZ0AAZPYmplY3RzcgATeHNidGkuYXBpLlNpbmdsZXRvbvynX/jPVuRGAgABTAAEcGF0aHQAEEx4c2J0aS9hcGkvUGF0aDt4cQB+ADZzcgAOeHNidGkuYXBpLlBhdGibPVwIzqUnhAIAAVsACmNvbXBvbmVudHN0ABpbTHhzYnRpL2FwaS9QYXRoQ29tcG9uZW50O3hwdXIAGltMeHNidGkuYXBpLlBhdGhDb21wb25lbnQ7Q9oJdC1nFnQCAAB4cAAAAANzcgAMeHNidGkuYXBpLklkmDJsizdTxEACAAFMAAJpZHEAfgAceHIAF3hzYnRpLmFwaS5QYXRoQ29tcG9uZW50X5oiWy6Gn7wCAAB4cHQABGphdmFzcQB+AFN0AARsYW5nc3IADnhzYnRpLmFwaS5UaGlz2wntpsxaQFwCAAB4cQB+AFRzcQB+AEd0AANBbnlzcQB+AEtzcQB+AE51cQB+AFEAAAACc3EAfgBTdAAFc2NhbGFxAH4AWnNxAH4AEnEAfgAgdXEAfgAhAAAAAHNxAH4AIwB0ABpxY1V0aWxzLnFjQ2lnYXJMb2N1c0NvdW50c3VxAH4AJgAAAAB+cQB+ACh0AAhDbGFzc0RlZnVxAH4ALAAAAABzcQB+AC4AcHNxAH4AM3EAfgA4c3EAfgAuAHBzcQB+ADNzcQB+ADtzcQB+AC4AcHNxAH4AM3VxAH4AEAAAAABzcQB+AC4AcHNxAH4AM3VxAH4AEAAAAABzcQB+AC4AcHNxAH4AM3VxAH4ARQAAAARzcgAXeHNidGkuYXBpLlBhcmFtZXRlcml6ZWQWbO5pA8m7fwIAAkwACGJhc2VUeXBlcQB+AEhbAA10eXBlQXJndW1lbnRzdAARW0x4c2J0aS9hcGkvVHlwZTt4cQB+ADZzcQB+AEd0AAlRQ1V0aWxpdHlzcQB+AEtzcQB+AE51cQB+AFEAAAACc3EAfgBTdAAHcWNVdGlsc3EAfgBadXEAfgBFAAAAAXNxAH4AeHNxAH4AR3QABlR1cGxlMnNxAH4AS3NxAH4ATnVxAH4AUQAAAAJzcQB+AFNxAH4AYXEAfgBadXEAfgBFAAAAAnNxAH4AR3QAA0ludHEAfgCGcQB+AItzcQB+AEd0AApnZW5VdGlsaXR5cQB+AH1zcQB+AEdxAH4ASnNxAH4AS3NxAH4ATnVxAH4AUQAAAANzcQB+AFNxAH4AVnNxAH4AU3EAfgBYcQB+AFpzcQB+AEdxAH4AXHEAfgCGdXIAFFtMeHNidGkuYXBpLlBhY2thZ2U7WxMZN3CnJ6ECAAB4cAAAAAFzcgAReHNidGkuYXBpLlBhY2thZ2V+WY/2rs45WAIAAUwABG5hbWVxAH4AHHhwdAAHcWNVdGlsc3NyABV4c2J0aS5hcGkuQ29tcGlsYXRpb27t+uDDauigQgIAAkoACXN0YXJ0VGltZVsAB291dHB1dHN0ABpbTHhzYnRpL2FwaS9PdXRwdXRTZXR0aW5nO3hwAAABW2f5RhF1cgAaW0x4c2J0aS5hcGkuT3V0cHV0U2V0dGluZzt/asLzp4elQgIAAHhwAAAAAXNyABd4c2J0aS5hcGkuT3V0cHV0U2V0dGluZ3rZmkd0+x17AgACTAAPb3V0cHV0RGlyZWN0b3J5cQB+ABxMAA9zb3VyY2VEaXJlY3RvcnlxAH4AHHhwdAAsQzpcVXNlcnNcaGFydGxleXNcd29ya3NwYWNlXEhhcnRsZXlVdGlsc1xiaW50ADdDOlxVc2Vyc1xoYXJ0bGV5c1x3b3Jrc3BhY2VcSGFydGxleVV0aWxzXHNyY1xtYWluXHNjYWxhdXIAAltCrPMX+AYIVOACAAB4cAAAABQgy3g8yVoUZkqaRXNw8TgPgaG69Q==
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\qcUtils\qcCigarMatch.scala -> 
-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
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\qcUtils\qcFeatureComboCt.scala -> 
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
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\qcUtils\qcGCContentCount.scala -> 
 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
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\qcUtils\qcGetGeneCounts.scala -> 
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
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\qcUtils\qcGtfAnnotationBuilder.scala -> 
-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
+rO0ABXNyABB4c2J0aS5hcGkuU291cmNlFlpwRASfbtoCAAZJAAdhcGlIYXNoWgAIaGFzTWFjcm9MABhfaW50ZXJuYWxPbmx5X25hbWVIYXNoZXN0ACRMeHNidGkvYXBpL19pbnRlcm5hbE9ubHlfTmFtZUhhc2hlcztMAANhcGl0ABVMeHNidGkvYXBpL1NvdXJjZUFQSTtMAAtjb21waWxhdGlvbnQAF0x4c2J0aS9hcGkvQ29tcGlsYXRpb247WwAEaGFzaHQAAltCeHCeI9W7AHNyACJ4c2J0aS5hcGkuX2ludGVybmFsT25seV9OYW1lSGFzaGVzVNq+mfrU7EwCAAJbAA9pbXBsaWNpdE1lbWJlcnN0ACNbTHhzYnRpL2FwaS9faW50ZXJuYWxPbmx5X05hbWVIYXNoO1sADnJlZ3VsYXJNZW1iZXJzcQB+AAd4cHVyACNbTHhzYnRpLmFwaS5faW50ZXJuYWxPbmx5X05hbWVIYXNoO0lagLbdlov0AgAAeHAAAAAAdXEAfgAJAAAAAHNyABN4c2J0aS5hcGkuU291cmNlQVBJuV6n+SkjOKQCAAJbAAtkZWZpbml0aW9uc3QAF1tMeHNidGkvYXBpL0RlZmluaXRpb247WwAIcGFja2FnZXN0ABRbTHhzYnRpL2FwaS9QYWNrYWdlO3hwdXIAF1tMeHNidGkuYXBpLkRlZmluaXRpb247iMlc57TjXg4CAAB4cAAAAAJzcgATeHNidGkuYXBpLkNsYXNzTGlrZYM0HKHfsJdsAgAETAAOZGVmaW5pdGlvblR5cGV0ABpMeHNidGkvYXBpL0RlZmluaXRpb25UeXBlO1sAEHNhdmVkQW5ub3RhdGlvbnN0ABNbTGphdmEvbGFuZy9TdHJpbmc7TAAIc2VsZlR5cGV0ABBMeHNidGkvYXBpL0xhenk7TAAJc3RydWN0dXJlcQB+ABV4cgAheHNidGkuYXBpLlBhcmFtZXRlcml6ZWREZWZpbml0aW9u+RFusdVQPOICAAFbAA50eXBlUGFyYW1ldGVyc3QAGltMeHNidGkvYXBpL1R5cGVQYXJhbWV0ZXI7eHIAFHhzYnRpLmFwaS5EZWZpbml0aW9uhyob6HFC40YCAARMAAZhY2Nlc3N0ABJMeHNidGkvYXBpL0FjY2VzcztbAAthbm5vdGF0aW9uc3QAF1tMeHNidGkvYXBpL0Fubm90YXRpb247TAAJbW9kaWZpZXJzdAAVTHhzYnRpL2FwaS9Nb2RpZmllcnM7TAAEbmFtZXQAEkxqYXZhL2xhbmcvU3RyaW5nO3hwc3IAEHhzYnRpLmFwaS5QdWJsaWO6WD2ubC1gQgIAAHhyABB4c2J0aS5hcGkuQWNjZXNz3WKa+B1jMUgCAAB4cHVyABdbTHhzYnRpLmFwaS5Bbm5vdGF0aW9uO+uX6xkQ9o1IAgAAeHAAAAAAc3IAE3hzYnRpLmFwaS5Nb2RpZmllcnPHERMhaZzcJAIAAUIABWZsYWdzeHAAdAAecWNVdGlscy5xY0d0ZkFubm90YXRpb25CdWlsZGVydXIAGltMeHNidGkuYXBpLlR5cGVQYXJhbWV0ZXI72W0mDyid8rYCAAB4cAAAAAB+cgAYeHNidGkuYXBpLkRlZmluaXRpb25UeXBlAAAAAAAAAAASAAB4cgAOamF2YS5sYW5nLkVudW0AAAAAAAAAABIAAHhwdAAIQ2xhc3NEZWZ1cgATW0xqYXZhLmxhbmcuU3RyaW5nO63SVufpHXtHAgAAeHAAAAAAc3IAE3hzYnRpLlNhZmVMYXp5JEltcGw7kU8R9EVMyQIAA1oACGJpdG1hcCQwTAACX3R0ABJMamF2YS9sYW5nL09iamVjdDtMAARldmFsdAARTHNjYWxhL0Z1bmN0aW9uMDt4cgAWeHNidGkuYXBpLkFic3RyYWN0TGF6edN3tQFfu+egAgAAeHABc3IAE3hzYnRpLmFwaS5FbXB0eVR5cGW8/Z5GSTuJJAIAAHhyABR4c2J0aS5hcGkuU2ltcGxlVHlwZXJ4YoghI79AAgAAeHIADnhzYnRpLmFwaS5UeXBlP2rZIRZJqsoCAAB4cHBzcQB+AC4Bc3IAE3hzYnRpLmFwaS5TdHJ1Y3R1cmWpqvmAk2/YAAIAA0wACGRlY2xhcmVkcQB+ABVMAAlpbmhlcml0ZWRxAH4AFUwAB3BhcmVudHNxAH4AFXhxAH4ANXNxAH4ALgF1cQB+ABAAAAAAcHNxAH4ALgF1cQB+ABAAAAAAcHNxAH4ALgF1cgARW0x4c2J0aS5hcGkuVHlwZTt0/6Vae/npQQIAAHhwAAAAAnNyABR4c2J0aS5hcGkuUHJvamVjdGlvbvPSjVTpRaQtAgACTAACaWRxAH4AHEwABnByZWZpeHQAFkx4c2J0aS9hcGkvU2ltcGxlVHlwZTt4cQB+ADR0AAZPYmplY3RzcgATeHNidGkuYXBpLlNpbmdsZXRvbvynX/jPVuRGAgABTAAEcGF0aHQAEEx4c2J0aS9hcGkvUGF0aDt4cQB+ADRzcgAOeHNidGkuYXBpLlBhdGibPVwIzqUnhAIAAVsACmNvbXBvbmVudHN0ABpbTHhzYnRpL2FwaS9QYXRoQ29tcG9uZW50O3hwdXIAGltMeHNidGkuYXBpLlBhdGhDb21wb25lbnQ7Q9oJdC1nFnQCAAB4cAAAAANzcgAMeHNidGkuYXBpLklkmDJsizdTxEACAAFMAAJpZHEAfgAceHIAF3hzYnRpLmFwaS5QYXRoQ29tcG9uZW50X5oiWy6Gn7wCAAB4cHQABGphdmFzcQB+AE10AARsYW5nc3IADnhzYnRpLmFwaS5UaGlz2wntpsxaQFwCAAB4cQB+AE5zcQB+AEF0AANBbnlzcQB+AEVzcQB+AEh1cQB+AEsAAAACc3EAfgBNdAAFc2NhbGFxAH4AVHBwc3EAfgAScQB+ACB1cQB+ACEAAAAAc3EAfgAjAHQAHnFjVXRpbHMucWNHdGZBbm5vdGF0aW9uQnVpbGRlcnVxAH4AJgAAAAB+cQB+ACh0AAZNb2R1bGV1cQB+ACwAAAAAc3EAfgAuAXEAfgA2cHNxAH4ALgFzcQB+ADhzcQB+AC4BdXEAfgAQAAAAAHBzcQB+AC4BdXEAfgAQAAAAAHBzcQB+AC4BdXEAfgA/AAAAAnNxAH4AQXEAfgBEc3EAfgBFc3EAfgBIdXEAfgBLAAAAA3NxAH4ATXEAfgBQc3EAfgBNcQB+AFJxAH4AVHNxAH4AQXEAfgBWc3EAfgBFc3EAfgBIdXEAfgBLAAAAAnNxAH4ATXEAfgBbcQB+AFRwcHVyABRbTHhzYnRpLmFwaS5QYWNrYWdlO1sTGTdwpyehAgAAeHAAAAABc3IAEXhzYnRpLmFwaS5QYWNrYWdlflmP9q7OOVgCAAFMAARuYW1lcQB+ABx4cHQAB3FjVXRpbHNzcgAVeHNidGkuYXBpLkNvbXBpbGF0aW9u7frgw2rooEICAAJKAAlzdGFydFRpbWVbAAdvdXRwdXRzdAAaW0x4c2J0aS9hcGkvT3V0cHV0U2V0dGluZzt4cAAAAV86WJRYdXIAGltMeHNidGkuYXBpLk91dHB1dFNldHRpbmc7f2rC86eHpUICAAB4cAAAAAFzcgAXeHNidGkuYXBpLk91dHB1dFNldHRpbmd62ZpHdPsdewIAAkwAD291dHB1dERpcmVjdG9yeXEAfgAcTAAPc291cmNlRGlyZWN0b3J5cQB+ABx4cHQALEM6XFVzZXJzXGhhcnRsZXlzXHdvcmtzcGFjZVxIYXJ0bGV5VXRpbHNcYmludAA3QzpcVXNlcnNcaGFydGxleXNcd29ya3NwYWNlXEhhcnRsZXlVdGlsc1xzcmNcbWFpblxzY2FsYXVyAAJbQqzzF/gGCFTgAgAAeHAAAAAUto9gIbB7m8J6G25/ZAJovFtnNpw=
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\qcUtils\qcInnerDistance.scala -> 
-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
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\qcUtils\qcJunctionCounts.scala -> 
 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
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\qcUtils\qcMinorUtils.scala -> 
@@ -4769,11 +4781,11 @@ rO0ABXNyABB4c2J0aS5hcGkuU291cmNlFlpwRASfbtoCAAZJAAdhcGlIYXNoWgAIaGFzTWFjcm9MABhf
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\qcUtils\QCUtility.scala -> 
 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
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\qcUtils\runAllQC.scala -> 
-rO0ABXNyABB4c2J0aS5hcGkuU291cmNlFlpwRASfbtoCAAZJAAdhcGlIYXNoWgAIaGFzTWFjcm9MABhfaW50ZXJuYWxPbmx5X25hbWVIYXNoZXN0ACRMeHNidGkvYXBpL19pbnRlcm5hbE9ubHlfTmFtZUhhc2hlcztMAANhcGl0ABVMeHNidGkvYXBpL1NvdXJjZUFQSTtMAAtjb21waWxhdGlvbnQAF0x4c2J0aS9hcGkvQ29tcGlsYXRpb247WwAEaGFzaHQAAltCeHDmeD0BAHNyACJ4c2J0aS5hcGkuX2ludGVybmFsT25seV9OYW1lSGFzaGVzVNq+mfrU7EwCAAJbAA9pbXBsaWNpdE1lbWJlcnN0ACNbTHhzYnRpL2FwaS9faW50ZXJuYWxPbmx5X05hbWVIYXNoO1sADnJlZ3VsYXJNZW1iZXJzcQB+AAd4cHVyACNbTHhzYnRpLmFwaS5faW50ZXJuYWxPbmx5X05hbWVIYXNoO0lagLbdlov0AgAAeHAAAAAAdXEAfgAJAAAAAHNyABN4c2J0aS5hcGkuU291cmNlQVBJuV6n+SkjOKQCAAJbAAtkZWZpbml0aW9uc3QAF1tMeHNidGkvYXBpL0RlZmluaXRpb247WwAIcGFja2FnZXN0ABRbTHhzYnRpL2FwaS9QYWNrYWdlO3hwdXIAF1tMeHNidGkuYXBpLkRlZmluaXRpb247iMlc57TjXg4CAAB4cAAAAAFzcgATeHNidGkuYXBpLkNsYXNzTGlrZYM0HKHfsJdsAgAETAAOZGVmaW5pdGlvblR5cGV0ABpMeHNidGkvYXBpL0RlZmluaXRpb25UeXBlO1sAEHNhdmVkQW5ub3RhdGlvbnN0ABNbTGphdmEvbGFuZy9TdHJpbmc7TAAIc2VsZlR5cGV0ABBMeHNidGkvYXBpL0xhenk7TAAJc3RydWN0dXJlcQB+ABV4cgAheHNidGkuYXBpLlBhcmFtZXRlcml6ZWREZWZpbml0aW9u+RFusdVQPOICAAFbAA50eXBlUGFyYW1ldGVyc3QAGltMeHNidGkvYXBpL1R5cGVQYXJhbWV0ZXI7eHIAFHhzYnRpLmFwaS5EZWZpbml0aW9uhyob6HFC40YCAARMAAZhY2Nlc3N0ABJMeHNidGkvYXBpL0FjY2VzcztbAAthbm5vdGF0aW9uc3QAF1tMeHNidGkvYXBpL0Fubm90YXRpb247TAAJbW9kaWZpZXJzdAAVTHhzYnRpL2FwaS9Nb2RpZmllcnM7TAAEbmFtZXQAEkxqYXZhL2xhbmcvU3RyaW5nO3hwc3IAEHhzYnRpLmFwaS5QdWJsaWO6WD2ubC1gQgIAAHhyABB4c2J0aS5hcGkuQWNjZXNz3WKa+B1jMUgCAAB4cHVyABdbTHhzYnRpLmFwaS5Bbm5vdGF0aW9uO+uX6xkQ9o1IAgAAeHAAAAAAc3IAE3hzYnRpLmFwaS5Nb2RpZmllcnPHERMhaZzcJAIAAUIABWZsYWdzeHAAdAAQcWNVdGlscy5ydW5BbGxRQ3VyABpbTHhzYnRpLmFwaS5UeXBlUGFyYW1ldGVyO9ltJg8onfK2AgAAeHAAAAAAfnIAGHhzYnRpLmFwaS5EZWZpbml0aW9uVHlwZQAAAAAAAAAAEgAAeHIADmphdmEubGFuZy5FbnVtAAAAAAAAAAASAAB4cHQABk1vZHVsZXVyABNbTGphdmEubGFuZy5TdHJpbmc7rdJW5+kde0cCAAB4cAAAAABzcgATeHNidGkuU2FmZUxhenkkSW1wbDuRTxH0RUzJAgADWgAIYml0bWFwJDBMAAJfdHQAEkxqYXZhL2xhbmcvT2JqZWN0O0wABGV2YWx0ABFMc2NhbGEvRnVuY3Rpb24wO3hyABZ4c2J0aS5hcGkuQWJzdHJhY3RMYXp503e1AV+756ACAAB4cABwc3IAIHhzYnRpLlNhZmVMYXp5JCRhbm9uZnVuJHN0cmljdCQxAAAAAAAAAAACAAFMAAd2YWx1ZSQxcQB+AC94cHNyABN4c2J0aS5hcGkuRW1wdHlUeXBlvP2eRkk7iSQCAAB4cgAUeHNidGkuYXBpLlNpbXBsZVR5cGVyeGKIISO/QAIAAHhyAA54c2J0aS5hcGkuVHlwZT9q2SEWSarKAgAAeHBzcQB+AC4AcHNxAH4AM3NyABN4c2J0aS5hcGkuU3RydWN0dXJlqar5gJNv2AACAANMAAhkZWNsYXJlZHEAfgAVTAAJaW5oZXJpdGVkcQB+ABVMAAdwYXJlbnRzcQB+ABV4cQB+ADdzcQB+AC4AcHNxAH4AM3VxAH4AEAAAAABzcQB+AC4AcHNxAH4AM3VxAH4AEAAAAABzcQB+AC4AcHNxAH4AM3VyABFbTHhzYnRpLmFwaS5UeXBlO3T/pVp7+elBAgAAeHAAAAACc3IAFHhzYnRpLmFwaS5Qcm9qZWN0aW9u89KNVOlFpC0CAAJMAAJpZHEAfgAcTAAGcHJlZml4dAAWTHhzYnRpL2FwaS9TaW1wbGVUeXBlO3hxAH4ANnQABk9iamVjdHNyABN4c2J0aS5hcGkuU2luZ2xldG9u/Kdf+M9W5EYCAAFMAARwYXRodAAQTHhzYnRpL2FwaS9QYXRoO3hxAH4ANnNyAA54c2J0aS5hcGkuUGF0aJs9XAjOpSeEAgABWwAKY29tcG9uZW50c3QAGltMeHNidGkvYXBpL1BhdGhDb21wb25lbnQ7eHB1cgAaW0x4c2J0aS5hcGkuUGF0aENvbXBvbmVudDtD2gl0LWcWdAIAAHhwAAAAA3NyAAx4c2J0aS5hcGkuSWSYMmyLN1PEQAIAAUwAAmlkcQB+ABx4cgAXeHNidGkuYXBpLlBhdGhDb21wb25lbnRfmiJbLoafvAIAAHhwdAAEamF2YXNxAH4AU3QABGxhbmdzcgAOeHNidGkuYXBpLlRoaXPbCe2mzFpAXAIAAHhxAH4AVHNxAH4AR3QAA0FueXNxAH4AS3NxAH4ATnVxAH4AUQAAAAJzcQB+AFN0AAVzY2FsYXEAfgBadXIAFFtMeHNidGkuYXBpLlBhY2thZ2U7WxMZN3CnJ6ECAAB4cAAAAAFzcgAReHNidGkuYXBpLlBhY2thZ2V+WY/2rs45WAIAAUwABG5hbWVxAH4AHHhwdAAHcWNVdGlsc3NyABV4c2J0aS5hcGkuQ29tcGlsYXRpb27t+uDDauigQgIAAkoACXN0YXJ0VGltZVsAB291dHB1dHN0ABpbTHhzYnRpL2FwaS9PdXRwdXRTZXR0aW5nO3hwAAABW2f5RhF1cgAaW0x4c2J0aS5hcGkuT3V0cHV0U2V0dGluZzt/asLzp4elQgIAAHhwAAAAAXNyABd4c2J0aS5hcGkuT3V0cHV0U2V0dGluZ3rZmkd0+x17AgACTAAPb3V0cHV0RGlyZWN0b3J5cQB+ABxMAA9zb3VyY2VEaXJlY3RvcnlxAH4AHHhwdAAsQzpcVXNlcnNcaGFydGxleXNcd29ya3NwYWNlXEhhcnRsZXlVdGlsc1xiaW50ADdDOlxVc2Vyc1xoYXJ0bGV5c1x3b3Jrc3BhY2VcSGFydGxleVV0aWxzXHNyY1xtYWluXHNjYWxhdXIAAltCrPMX+AYIVOACAAB4cAAAABQ0TcB+r4aj76S6i2q0M4KvvOxV9Q==
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
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\runner\helpDocs.scala -> 
 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
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\runner\runner.scala -> 
-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 external apis:
 0 items
 source infos:
@@ -4885,5 +4897,32 @@ AAAAAAAAAAA=
 C:\Users\hartleys\workspace\HartleyUtils\src\main\scala\runner\runner.scala -> 
 AAAAAAAAAAA=
 compilations:
-1 items
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+28 items
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diff --git a/src/HartleyUtils/bin/qcUtils/qcInnerDistance$.class b/src/HartleyUtils/bin/qcUtils/qcInnerDistance$.class
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diff --git a/src/HartleyUtils/bin/qcUtils/qcInnerDistance.class b/src/HartleyUtils/bin/qcUtils/qcInnerDistance.class
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diff --git a/src/HartleyUtils/build.sbt b/src/HartleyUtils/build.sbt
index 590610a..2c7cebe 100644
--- a/src/HartleyUtils/build.sbt
+++ b/src/HartleyUtils/build.sbt
@@ -2,8 +2,9 @@ import AssemblyKeys._
 
 assemblySettings
 
-scalaVersion := "2.11.1"
+scalaVersion := "2.12.4"
 
+scalacOptions := Seq("-unchecked", "-deprecation")
 
 jarName in assembly := "QoRTs.jar"
 
diff --git a/src/HartleyUtils/src/main/scala/fileConversionUtils/addNovelSplices.scala b/src/HartleyUtils/src/main/scala/fileConversionUtils/addNovelSplices.scala
index 12b2756..09b9c53 100644
--- a/src/HartleyUtils/src/main/scala/fileConversionUtils/addNovelSplices.scala
+++ b/src/HartleyUtils/src/main/scala/fileConversionUtils/addNovelSplices.scala
@@ -10,7 +10,7 @@ import internalUtils.commandLineUI._;
 import internalUtils.commonSeqUtils._;
 import internalUtils.genomicAnnoUtils._;
 import internalUtils.GtfTool._;
-import scala.collection.JavaConversions._;
+//import scala.collection.JavaConversions._;
 
 import internalUtils.genomicUtils._;
 import internalUtils.optionHolder._;
diff --git a/src/HartleyUtils/src/main/scala/fileConversionUtils/bamToWiggle.scala b/src/HartleyUtils/src/main/scala/fileConversionUtils/bamToWiggle.scala
index 43f951f..2b9b1e0 100644
--- a/src/HartleyUtils/src/main/scala/fileConversionUtils/bamToWiggle.scala
+++ b/src/HartleyUtils/src/main/scala/fileConversionUtils/bamToWiggle.scala
@@ -8,7 +8,7 @@ import java.io.InputStream
 import java.io.ByteArrayInputStream
 import java.io.FileInputStream
 import java.io.File
-import scala.collection.JavaConversions._
+//import scala.collection.JavaConversions._
 
 import net.sf.samtools._
 
@@ -20,9 +20,11 @@ import internalUtils.commandLineUI._;
 import internalUtils.commonSeqUtils._;
 import internalUtils.genomicAnnoUtils._;
 import internalUtils.GtfTool._;
-import scala.collection.JavaConversions._;
+//import scala.collection.JavaConversions._;
 import internalUtils.optionHolder._;
 
+import scala.collection.JavaConverters._;
+
 import internalUtils.genomicUtils._;
 import qcUtils.QCUtility;
 
@@ -131,6 +133,18 @@ object bamToWiggle {
                                          argDesc =  "A comma delimited list of integers from 0-255, indicating the rgb color and alt-color for the wiggle file."+
                                                     "This is equivalent to using --additionalTrackOptions \"color=r,g,b altColor=r,g,b itemRgb=On\""
                                         ) ::
+                    new BinaryOptionArgument[Int](
+                                         name = "reservoirSample", 
+                                         arg = List("--reservoirSample"), 
+                                         valueName = "K",
+                                         argDesc =  "Perform reservoir sampling to select a random subsample of size K. This uses linear time with respect to numReads, and linear memory usage with respect to K."
+                                        ) ::
+                    new BinaryOptionArgument[Int](
+                                         name = "reservoirSeed", 
+                                         arg = List("--reservoirSeed"), 
+                                         valueName = "s",
+                                         argDesc =  "Random seed for use with reservoir sampling."
+                                        ) ::
                     new UnaryArgument(   name = "noTruncate", 
                                          arg = List("--noTruncate"), // name of value
                                          argDesc = "The UCSC tool wigToBigWig only allows wiggle files in which every window is of equal size. "+
@@ -234,7 +248,9 @@ object bamToWiggle {
              parser.get[String]("additionalTrackOptions"),
              ! parser.get[Boolean]("nameSorted"),
              parser.get[Int]("minMAPQ"),
-             parser.get[Boolean]("checkForAlignmentBlocks")
+             parser.get[Boolean]("checkForAlignmentBlocks"),
+             parser.get[Option[Int]]("reservoirSample"),
+             parser.get[Option[Int]]("reservoirSeed")
            );
          }
      }
@@ -260,7 +276,9 @@ object bamToWiggle {
       includeTrackDef : Boolean,
       rgbColor : Option[String],
       additionalTrackOptions : String,
-      coordSorted : Boolean, minMAPQ : Int, checkForAlignmentBlocks : Boolean){
+      coordSorted : Boolean, minMAPQ : Int, checkForAlignmentBlocks : Boolean,
+      reservoirSample : Option[Int],
+      reservoirSeed : Option[Int]){
     
     //registerGlobalParam[Boolean]("noGzipOutput", noGzipOutput);
     internalUtils.optionHolder.OPTION_noGzipOutput = noGzipOutput;
@@ -276,7 +294,14 @@ object bamToWiggle {
       else         reportln("QoRTs is Running in name-sorted mode.","note");
     }
     
-    val qcBTW : QcBamToWig = new QcBamToWig(trackName , chromLengthFile , noTruncate , windowSize , isSingleEnd, stranded , fr_secondStrand, sizeFactor, negativeReverseStrand, countPairsTogether , includeTrackDef, rgbColor, additionalTrackOptions);
+    val qcBTW : QCUtility[Unit] = reservoirSample match {
+      case None => {
+        new QcBamToWig(trackName , chromLengthFile , noTruncate , windowSize , isSingleEnd, stranded , fr_secondStrand, sizeFactor, negativeReverseStrand, countPairsTogether , includeTrackDef, rgbColor, additionalTrackOptions);
+      }
+      case Some(k) => {
+        new QcBamToWigReservoirSample(k,reservoirSeed,trackName , chromLengthFile , noTruncate , windowSize , isSingleEnd, stranded , fr_secondStrand, sizeFactor, negativeReverseStrand, countPairsTogether , includeTrackDef, rgbColor, additionalTrackOptions);
+      }
+    }
     
     standardStatusReport(initialTimeStamp);
     val postSetupStamp = TimeStampUtil();
@@ -300,7 +325,7 @@ object bamToWiggle {
     
   def runOnFile2(  
                    infile : String, 
-                   qcBTW : QcBamToWig,
+                   qcBTW : QCUtility[Unit],
                    testRun  :Boolean, 
                    keepMultiMapped : Boolean, 
                    readGroup : Option[String],
@@ -430,7 +455,7 @@ object bamToWiggle {
   }*/
   
   def getReadBlocks(r : SAMRecord) : Vector[(Int,Int)] = {
-    r.getAlignmentBlocks().toVector.map((block) => {
+    r.getAlignmentBlocks().asScala.toVector.map((block) => {
       (block.getReferenceStart() - 1, block.getReferenceStart() - 1 + block.getLength());
     });
   }
@@ -457,6 +482,130 @@ object bamToWiggle {
     })
   }
   
+
+  class QcBamToWigReservoirSample(
+                   K : Int, seed : Option[Int],
+                   trackName : String, chromLengthFile : String, 
+                   noTruncate : Boolean, windowSize : Int, 
+                   isSingleEnd: Boolean, stranded : Boolean,
+                   fr_secondStrand : Boolean, sizeFactor : Double, 
+                   negativeReverseStrand : Boolean, countPairsTogether : Boolean, 
+                   includeTrackDef : Boolean, rgbColor : Option[String],
+                   additionalTrackOptions : String) extends QCUtility[Unit] {
+    val rand = seed match{
+      case Some(s) => new scala.util.Random(s);
+      case None => new scala.util.Random();
+    }
+    
+    val chromMap : Map[(String,Char),Chrom] = genChrom(chromLengthFile, windowSize, stranded, ! noTruncate);
+    var unknownChromSet : Set[String] = Set[String]();
+    
+    val res = Array.ofDim[(String,Char,Vector[(Int,Int)])](K);
+    var n = 1;
+    
+    def runOnReadPair(r1 : SAMRecord, r2 : SAMRecord, readNum : Int){
+      if(isSingleEnd){
+        runOnRead(r1,readNum);
+      } else if(! countPairsTogether){
+        runOnRead(r1,readNum*2-1);
+        runOnRead(r2,readNum*2);
+      } else {
+        if(n <= K){
+          val chromName = r1.getReferenceName();
+          val strand = internalUtils.commonSeqUtils.getStrand(r1 , stranded , fr_secondStrand );
+          val blocks = getOverlappedPairBlocks(r1,r2);
+          res(readNum-1) = (chromName,strand,blocks);
+        } else {
+          val randNum = rand.nextInt(n) + 1;
+          if(randNum <= K){
+            val chromName = r1.getReferenceName();
+            val strand = internalUtils.commonSeqUtils.getStrand(r1 , stranded , fr_secondStrand );
+            val blocks = getOverlappedPairBlocks(r1,r2);
+            res(randNum-1) = (chromName,strand,blocks);
+          }
+        }
+        n = n + 1;
+      }
+    }
+    
+    def runOnRead(r : SAMRecord,readNum : Int){
+      if(readNum <= K){
+        val chromName = r.getReferenceName();
+        val strand = internalUtils.commonSeqUtils.getStrand(r , stranded , fr_secondStrand );
+        val blocks = getReadBlocks(r);
+        res(readNum-1) = (chromName,strand,blocks);
+      } else {
+        val randNum = rand.nextInt(readNum) + 1;
+        if(randNum <= K){
+          val chromName = r.getReferenceName();
+          val strand = internalUtils.commonSeqUtils.getStrand(r , stranded , fr_secondStrand );
+          val blocks = getReadBlocks(r);
+          res(randNum-1) = (chromName,strand,blocks);
+        }
+      }
+      n = n + 1;
+    }
+    
+    def writeOutput(outfile : String, summaryWriter : WriterUtil, docWriter : DocWriterUtil = null){
+      res.filter(_ != null).foreach{ case (chromName,strand,blocks) => {
+        chromMap.get((chromName,strand)) match {
+          case Some(chrom) => {
+            chrom.countBlocks(blocks);
+          }
+          case None => {
+            if(! unknownChromSet.contains(chromName)){
+              reportln("WARNING: Chromosome not found in the chromLengthFile: ["+chromName+","+strand+"]","deepDebug");
+              unknownChromSet += chromName;
+            }
+          }
+        }
+      }}
+      
+      val windowString = if(windowSize == 100) "" else (".Win"+windowSize.toString());
+      
+      if(stranded){
+        val writerF = openWriterSmart_viaGlobalParam(outfile + windowString + ".fwd.wig");
+        val writerR = openWriterSmart_viaGlobalParam(outfile + windowString + ".rev.wig");
+        val rgbColorString = if(rgbColor.isEmpty) " " else " color="+rgbColor.get+" altColor="+rgbColor.get +" itemRgb=On";
+        val additionalOptionsString = " "+additionalTrackOptions+" ";
+        if(includeTrackDef){
+          writerF.write("track name="+trackName+"_FWD type=wiggle_0 visibility=full"+rgbColorString+additionalOptionsString+"\n");
+          writerR.write("track name="+trackName+"_REV type=wiggle_0 visibility=full"+rgbColorString+additionalOptionsString+"\n");
+        }
+        
+        val sortedKeyList : Vector[(String,Char)] = chromMap.keySet.toVector.sorted
+        for(chromPairs <- sortedKeyList){
+          	val chrom = chromMap(chromPairs);
+	        if(chrom.chromStrand == '+'){
+	          writeChrom(chrom,writerF,sizeFactor,false);
+	        } else {
+	          writeChrom(chrom,writerR,sizeFactor,negativeReverseStrand);
+	        }
+        }
+        close(writerF);
+        close(writerR);
+      } else {
+        val writer = openWriterSmart_viaGlobalParam(outfile + windowString + ".unstranded.wig");
+        val rgbColorString = if(rgbColor.isEmpty) " " else " color="+rgbColor.get+" altColor="+rgbColor.get +" ";
+        val additionalOptionsString = " "+additionalTrackOptions+" ";
+        if(includeTrackDef){
+          writer.write("track name="+trackName+" type=wiggle_0 "+rgbColorString+" "+additionalOptionsString+"\n");
+        }
+        
+        val sortedKeyList : Vector[(String,Char)] = chromMap.keySet.toVector.sorted
+        for(chromPairs <- sortedKeyList){
+          val chrom = chromMap(chromPairs);
+	      writeChrom(chrom,writer,sizeFactor,false);
+        }
+        close(writer);
+      }
+    }
+    
+    def getUtilityName : String = "bamToWig";
+
+  }
+  
+  
   
   class QcBamToWig(trackName : String, chromLengthFile : String, 
                    noTruncate : Boolean, windowSize : Int, 
diff --git a/src/HartleyUtils/src/main/scala/fileConversionUtils/prepFlatGtfFile.scala b/src/HartleyUtils/src/main/scala/fileConversionUtils/prepFlatGtfFile.scala
index 55882dc..8ae9df8 100644
--- a/src/HartleyUtils/src/main/scala/fileConversionUtils/prepFlatGtfFile.scala
+++ b/src/HartleyUtils/src/main/scala/fileConversionUtils/prepFlatGtfFile.scala
@@ -9,7 +9,7 @@ import java.io.InputStream
 import java.io.ByteArrayInputStream
 import java.io.FileInputStream
 import java.io.File
-import scala.collection.JavaConversions._
+//import scala.collection.JavaConversions._
 import scala.collection.mutable.HashMap;
 
 import net.sf.samtools._
@@ -25,7 +25,7 @@ import internalUtils.commonSeqUtils._;
 import internalUtils.genomicUtils._;
 import internalUtils.genomicAnnoUtils._;
 import internalUtils.GtfTool._;
-import scala.collection.JavaConversions._
+//import scala.collection.JavaConversions._
 
 object prepFlatGtfFile {
 
@@ -178,7 +178,7 @@ object prepFlatGtfFile {
         txMap += (tx -> gene);
         txArray.addSpan(gtfLine.getGenomicInterval, tx);
         
-        if(geneInfoMap.containsKey(gene)){
+        if(geneInfoMap.contains(gene)){
           val (geneStrand, geneTxSet) = geneInfoMap(gene);
           val newStrand = if(geneStrand != strandedStrand){
             '.';
@@ -186,7 +186,7 @@ object prepFlatGtfFile {
             geneStrand;
           }
           
-          if(! geneTxSet.containsKey(tx) ){
+          if(! geneTxSet.contains(tx) ){
             geneInfoMap += ((gene, (newStrand, geneTxSet.updated(tx,strandedStrand))))
           }
         } else {
@@ -205,7 +205,7 @@ object prepFlatGtfFile {
        
       for((iv, txSet) <- txArray.getSteps(chromName,strand)){
         for(tx <- txSet){
-          if(lastExonTxMap.containsKey(tx)){
+          if(lastExonTxMap.contains(tx)){
             val prevExonEnd = lastExonTxMap(tx);
             if(iv.start != prevExonEnd){
               val spliceIV = new GenomicInterval(chromName,strand,prevExonEnd,iv.start);
@@ -403,7 +403,7 @@ object prepFlatGtfFile {
     reportln("    FlatteningGtf: Compiling Aggregate Info . . . ("+getDateAndTimeString+")","debug");
     val aggregateInfoMap = scala.collection.mutable.AnyRefMap[String, (Char, Int, Map[String,Char])]();
     for((g,a) <- aggregateGeneMap){
-       if(aggregateInfoMap.containsKey(a)){
+       if(aggregateInfoMap.contains(a)){
          val (geneStrand, geneTxMap) = geneInfoMap(g);
          val (aggregateStrand, geneCt, aggregateTxMap) = aggregateInfoMap(a);
          val newAggregateStrand = if(geneStrand != aggregateStrand){
diff --git a/src/HartleyUtils/src/main/scala/internalUtils/commonSeqUtils.scala b/src/HartleyUtils/src/main/scala/internalUtils/commonSeqUtils.scala
index 2353f02..4eb79ac 100644
--- a/src/HartleyUtils/src/main/scala/internalUtils/commonSeqUtils.scala
+++ b/src/HartleyUtils/src/main/scala/internalUtils/commonSeqUtils.scala
@@ -7,8 +7,9 @@ import internalUtils.stdUtils._;
 import internalUtils.fileUtils._;
 import internalUtils.commandLineUI._;
 import java.io.File;
+import scala.collection.JavaConverters._;
 
-import scala.collection.JavaConversions._
+//import scala.collection.JavaConversions._
 
 object commonSeqUtils {
   
@@ -36,22 +37,23 @@ object commonSeqUtils {
   }
   
   def getTailClipping(r : SAMRecord) : Int = {
-    val lastCigarElement = r.getCigar().getCigarElements().last;
+    val cigElements = r.getCigar().getCigarElements().asScala
+    val lastCigarElement = cigElements.last;
     if(lastCigarElement.getOperator().equals(CigarOperator.SOFT_CLIP)){
       return lastCigarElement.getLength();
     } else if(lastCigarElement.getOperator().equals(CigarOperator.HARD_CLIP)){
-      val nextToLastCigarElement = r.getCigar().getCigarElements().takeRight(2).head;
+      val nextToLastCigarElement = cigElements.takeRight(2).head;
       if(nextToLastCigarElement.getOperator().equals(CigarOperator.SOFT_CLIP)){
         return nextToLastCigarElement.getLength();
       } else return 0;
     } else return 0;
   }
   def getLeadClipping(r : SAMRecord) : Int = {
-    val firstCigarElement = r.getCigar().getCigarElements().head;
+    val firstCigarElement = r.getCigar().getCigarElements().asScala.head;
     if(firstCigarElement.getOperator().equals(CigarOperator.SOFT_CLIP)){
       return firstCigarElement.getLength();
     } else if(firstCigarElement.getOperator().equals(CigarOperator.HARD_CLIP)){
-      val secondCigarElement = r.getCigar().getCigarElements().tail.head;
+      val secondCigarElement = r.getCigar().getCigarElements().asScala.tail.head;
       if(secondCigarElement.getOperator().equals(CigarOperator.SOFT_CLIP)){
         return secondCigarElement.getLength();
       } else return 0;
@@ -377,9 +379,9 @@ object commonSeqUtils {
    */
   def getCigarSeq(r : SAMRecord, reverse : Boolean) : Seq[CigarElement] = {
     if(reverse){
-      r.getCigar().getCigarElements().toVector.reverse;
+      r.getCigar().getCigarElements().asScala.toVector.reverse;
     } else {
-      r.getCigar().getCigarElements().toVector;
+      r.getCigar().getCigarElements().asScala.toVector;
     }
   }
   
@@ -399,7 +401,7 @@ object commonSeqUtils {
   def getUnclippedReadLength(r : SAMRecord) : Int = {
       val baseLength = r.getReadLength();
       if(! r.getReadUnmappedFlag()){
-        val cigar = r.getCigar().getCigarElements();
+        val cigar = r.getCigar().getCigarElements().asScala;
         val leftClip  = if(cigar.head.getOperator() == CigarOperator.HARD_CLIP) cigar.head.getLength() else 0;
         val rightClip = if(cigar.last.getOperator() == CigarOperator.HARD_CLIP) cigar.last.getLength() else 0;
         baseLength + leftClip + rightClip;
@@ -489,7 +491,7 @@ object commonSeqUtils {
   def getBasePairsWithH(r : SAMRecord, readLength : Int, assumeTailClipping : Boolean) : Seq[Byte] = {
     if(r.getReadNegativeStrandFlag()){
       val readBases = r.getReadBases().toVector.reverse;
-      val cigarElements = r.getCigar().getCigarElements()
+      val cigarElements = r.getCigar().getCigarElements().asScala
       val leadCigarElement = cigarElements.last;
       val tailCigarElement = cigarElements.head;
       
@@ -507,7 +509,7 @@ object commonSeqUtils {
       }
     } else {
       val readBases = r.getReadBases().toVector;
-      val cigarElements = r.getCigar().getCigarElements()
+      val cigarElements = r.getCigar().getCigarElements().asScala
       val leadCigarElement = cigarElements.head;
       val tailCigarElement = cigarElements.last;
       
@@ -535,7 +537,7 @@ object commonSeqUtils {
   }
   
   case class CigarHolder(cigar : Cigar, alignmentStart : Int, chromName : String, strand : Char){
-    lazy val cigOps : Stream[CigOp] = cigar.getCigarElements.toStream.scanLeft[(Int,Int,CigOp),Stream[(Int,Int,CigOp)]]( (alignmentStart,0,null) )( (startTriplet , ce) => {
+    lazy val cigOps : Stream[CigOp] = cigar.getCigarElements.asScala.toStream.scanLeft[(Int,Int,CigOp),Stream[(Int,Int,CigOp)]]( (alignmentStart,0,null) )( (startTriplet , ce) => {
       val (ref_start, read_start, prev) = startTriplet;
       val newOp = CigOp(ce, ref_start, read_start, chromName, strand);
       ((newOp.ref_end, newOp.read_end, newOp))
@@ -665,7 +667,7 @@ object commonSeqUtils {
     val header = reader.getFileHeader();
     
     // Check alignment software
-    val alignmentProgramList : List[SAMProgramRecord] = header.getProgramRecords().toList;
+    val alignmentProgramList : List[SAMProgramRecord] = header.getProgramRecords().asScala.toList;
     
     //Check for tophat 2, print note:
     alignmentProgramList.find( (pr : SAMProgramRecord) => pr.getId() == "TopHat" ) match {
@@ -686,7 +688,7 @@ object commonSeqUtils {
     }
     
     
-    val iter : Iterator[SAMRecord] = reader.iterator();
+    val iter : Iterator[SAMRecord] = reader.asScala.iterator;
     var peekRecords = Seq[SAMRecord]();
      
     for(i <- 0 until peekCount){
@@ -779,7 +781,7 @@ object commonSeqUtils {
     val numPeekReadsPaired : Int = peekRecords.count(r => r.getReadPairedFlag());
     val numPeekReadsPairMapped : Int = peekPairMapped.length;
     val peekReadNameSet : Set[String] = peekPairMapped.map(_.getReadName()).toSet;
-    val numPeekPairs : Int = peekReadNameSet.size();
+    val numPeekPairs : Int = peekReadNameSet.size;
     val numPeekPairsMatched : Int = peekReadNameSet.count( id => {
       peekPairMapped.count(r => r.getReadName() == id) == 2;
     });
@@ -1071,9 +1073,9 @@ object commonSeqUtils {
           }
           val nextName = readOrder.head;
           readOrder = readOrder.tail;
-          if(buffer.containsKey(nextName)) return buffer.remove(nextName).get;
+          if(buffer.contains(nextName)) return buffer.remove(nextName).get;
           
-          while(iter.hasNext && (! buffer.containsKey(nextName))){
+          while(iter.hasNext && (! buffer.contains(nextName))){
             addNextPairToBuffer;
             if(bufferWarningSize < buffer.size){
                 reportln("NOTE: Unmatched Read-PAIR-Buffer Size > "+bufferWarningSize+" [Mem usage:"+MemoryUtil.memInfo+"]","note");
@@ -1090,7 +1092,7 @@ object commonSeqUtils {
                 bufferWarningSize = bufferWarningSize * warningSizeMultiplier;
             }
           }
-          if(!buffer.containsKey(nextName)){
+          if(!buffer.contains(nextName)){
             internalUtils.Reporter.error("ERROR ERROR ERROR: Reached end of bam file, there are "+(pairContainer.size+1)+" orphaned reads, which are marked as having a mapped pair, but no corresponding pair is found in the bam file. \n(Example Orphaned Read Name: "+nextName+")");
           }
           
diff --git a/src/HartleyUtils/src/main/scala/internalUtils/genomicAnnoUtils.scala b/src/HartleyUtils/src/main/scala/internalUtils/genomicAnnoUtils.scala
index 93ca039..f1cece0 100644
--- a/src/HartleyUtils/src/main/scala/internalUtils/genomicAnnoUtils.scala
+++ b/src/HartleyUtils/src/main/scala/internalUtils/genomicAnnoUtils.scala
@@ -9,7 +9,8 @@ import internalUtils.Reporter._;
 import internalUtils.commonSeqUtils._;
 import internalUtils.genomicAnnoUtils._;
 import internalUtils.GtfTool._;
-import scala.collection.JavaConversions._
+//import scala.collection.JavaConversions._
+import scala.collection.JavaConverters._;
 
 object genomicAnnoUtils {
 
@@ -19,7 +20,7 @@ object genomicAnnoUtils {
 
 
   /*
-   * Useful classes:
+   * Useful classes: 
    */
   abstract class EfficientGenomeSeqContainer { 
     def currIter : Iterator[String];
@@ -194,7 +195,7 @@ object genomicAnnoUtils {
     
     def currIter = currentIter;
     def switchToChrom(chrom : String){
-        if(fastaMap.containsKey(chrom)){
+        if(fastaMap.contains(chrom)){
           currentIter = internalUtils.fileUtils.getLinesSmartUnzip(fastaMap(chrom)).drop(1).map(_.toUpperCase());
           clearBuffer();
           currChrom = chrom;
diff --git a/src/HartleyUtils/src/main/scala/internalUtils/genomicUtils.scala b/src/HartleyUtils/src/main/scala/internalUtils/genomicUtils.scala
index 7c2e6de..3b6e2d0 100644
--- a/src/HartleyUtils/src/main/scala/internalUtils/genomicUtils.scala
+++ b/src/HartleyUtils/src/main/scala/internalUtils/genomicUtils.scala
@@ -10,7 +10,8 @@ import internalUtils.commonSeqUtils._;
 import internalUtils.genomicAnnoUtils._; 
 
 import net.sf.samtools._
-import scala.collection.JavaConversions._;
+//import scala.collection.JavaConversions._;
+import scala.collection.JavaConverters._;
 
 
 object genomicUtils {
@@ -48,7 +49,7 @@ object genomicUtils {
   
   def getGenomicIntervalsFromRead(r : SAMRecord, stranded : Boolean, fr_secondStrand : Boolean) : Iterator[GenomicInterval] = {
     val strand = getStrand(r,stranded,fr_secondStrand);
-    val blocks : Iterator[AlignmentBlock] = r.getAlignmentBlocks().iterator;
+    val blocks : Iterator[AlignmentBlock] = r.getAlignmentBlocks().asScala.iterator;
     val chromName = r.getReferenceName();
      
     return new Iterator[GenomicInterval](){
@@ -66,7 +67,7 @@ object genomicUtils {
       else if(rawStrand == '+') '-';
       else '+';
     } 
-    val blocks : Iterator[AlignmentBlock] = r.getAlignmentBlocks().iterator;
+    val blocks : Iterator[AlignmentBlock] = r.getAlignmentBlocks().asScala.iterator;
     val chromName = r.getReferenceName();
     
     return new Iterator[GenomicInterval](){
diff --git a/src/HartleyUtils/src/main/scala/qcUtils/qcCigarDistribution.scala b/src/HartleyUtils/src/main/scala/qcUtils/qcCigarDistribution.scala
index 620d5ed..b423747 100644
--- a/src/HartleyUtils/src/main/scala/qcUtils/qcCigarDistribution.scala
+++ b/src/HartleyUtils/src/main/scala/qcUtils/qcCigarDistribution.scala
@@ -8,8 +8,9 @@ import java.io.InputStream
 import java.io.ByteArrayInputStream
 import java.io.FileInputStream
 import java.io.File
-import scala.collection.JavaConversions._
+//import scala.collection.JavaConversions._
 import scala.collection.mutable.HashMap;
+import scala.collection.JavaConverters._;
 
 import net.sf.samtools._
 
@@ -70,9 +71,9 @@ object qcCigarDistribution {
     var readPos = 0;
     
     val elementList : List[CigarElement] = if(reverse) {
-      c.getCigarElements().toList.reverse;
+      c.getCigarElements().asScala.toList.reverse;
     } else {
-      c.getCigarElements().toList;
+      c.getCigarElements().asScala.toList;
     }
     
     for(ce : CigarElement <- elementList){
diff --git a/src/HartleyUtils/src/main/scala/qcUtils/qcCigarMatch.scala b/src/HartleyUtils/src/main/scala/qcUtils/qcCigarMatch.scala
index e3d4bb0..dd76394 100644
--- a/src/HartleyUtils/src/main/scala/qcUtils/qcCigarMatch.scala
+++ b/src/HartleyUtils/src/main/scala/qcUtils/qcCigarMatch.scala
@@ -9,7 +9,8 @@ import internalUtils.commandLineUI._;
 import internalUtils.commonSeqUtils._;
 import internalUtils.genomicAnnoUtils._;
 import internalUtils.GtfTool._;
-import scala.collection.JavaConversions._;
+//import scala.collection.JavaConversions._;
+import scala.collection.JavaConverters._;
 
 import internalUtils.genomicUtils._;
 import internalUtils.optionHolder._;
@@ -297,8 +298,8 @@ class qcCigarMatch(readLen : Int) extends QCUtility[Unit] {
       //Count NO_OVERLAP
     } else {
       //COUNT OVERLAP
-      val bf : Vector[AlignmentBlock] = rf.getAlignmentBlocks().toVector;
-      val br : Vector[AlignmentBlock] = rr.getAlignmentBlocks().toVector;      
+      val bf : Vector[AlignmentBlock] = rf.getAlignmentBlocks().asScala.toVector;
+      val br : Vector[AlignmentBlock] = rr.getAlignmentBlocks().asScala.toVector;      
       val blocksOverlap = bf.exists( a => br.exists( b => qcCigarMatch.doBlocksIntersect(a,b) )  );
       if(! blocksOverlap){
         misOverlap += 1;  
diff --git a/src/HartleyUtils/src/main/scala/qcUtils/qcFeatureComboCt.scala b/src/HartleyUtils/src/main/scala/qcUtils/qcFeatureComboCt.scala
index 58b1464..8c5b599 100644
--- a/src/HartleyUtils/src/main/scala/qcUtils/qcFeatureComboCt.scala
+++ b/src/HartleyUtils/src/main/scala/qcUtils/qcFeatureComboCt.scala
@@ -11,7 +11,8 @@ import internalUtils.commandLineUI._;
 import internalUtils.commonSeqUtils._;
 import internalUtils.genomicAnnoUtils._;
 import internalUtils.GtfTool._;
-import scala.collection.JavaConversions._;
+//import scala.collection.JavaConversions._;
+import scala.collection.JavaConverters._;
 
 import internalUtils.genomicUtils._;
 import internalUtils.optionHolder._;
@@ -159,8 +160,8 @@ class qcFeatureComboCt(anno_holder : qcGtfAnnotationBuilder, stranded : Boolean,
     //                                 novelSplices.toVector.sorted
     //                               ));
     
-    val insertions = r1.getCigar().getCigarElements().filter(_.getOperator() == CigarOperator.INSERTION).map(_.getLength());
-    val deletions  = r1.getCigar().getCigarElements().filter(_.getOperator() == CigarOperator.DELETION).map(_.getLength());
+    val insertions = r1.getCigar().getCigarElements().asScala.filter(_.getOperator() == CigarOperator.INSERTION).map(_.getLength());
+    val deletions  = r1.getCigar().getCigarElements().asScala.filter(_.getOperator() == CigarOperator.DELETION).map(_.getLength());
     
     val indelTotal = insertions.sum + deletions.sum;
     val featureSet = readExonSet ++ knownSplices;
diff --git a/src/HartleyUtils/src/main/scala/qcUtils/qcGetGeneCounts.scala b/src/HartleyUtils/src/main/scala/qcUtils/qcGetGeneCounts.scala
index 5d212d7..c800437 100644
--- a/src/HartleyUtils/src/main/scala/qcUtils/qcGetGeneCounts.scala
+++ b/src/HartleyUtils/src/main/scala/qcUtils/qcGetGeneCounts.scala
@@ -10,7 +10,8 @@ import internalUtils.commandLineUI._;
 import internalUtils.commonSeqUtils._;
 import internalUtils.genomicAnnoUtils._;
 import internalUtils.GtfTool._;
-import scala.collection.JavaConversions._;
+//import scala.collection.JavaConversions._;
+import scala.collection.JavaConverters._;
 
 import internalUtils.genomicUtils._;
 
@@ -94,7 +95,7 @@ object qcGetGeneCounts {
   } 
   
   private def helper_findReadIntervalCoverage(r : SAMRecord, intervalVector : Vector[TreeSet[GenomicInterval]]) : Set[Int] = {
-    return r.getAlignmentBlocks.iterator.foldLeft( Set[Int]() )( (sofar, currBlock) => {
+    return r.getAlignmentBlocks.asScala.iterator.foldLeft( Set[Int]() )( (sofar, currBlock) => {
       val (start,end) = (currBlock.getReferenceStart() - 1, currBlock.getReferenceStart - 1 + currBlock.getLength());
       sofar ++ helper_findSpanIntervalCoverage(start,end,intervalVector);
     });
diff --git a/src/HartleyUtils/src/main/scala/qcUtils/qcGtfAnnotationBuilder.scala b/src/HartleyUtils/src/main/scala/qcUtils/qcGtfAnnotationBuilder.scala
index 87a0294..d27f0d2 100644
--- a/src/HartleyUtils/src/main/scala/qcUtils/qcGtfAnnotationBuilder.scala
+++ b/src/HartleyUtils/src/main/scala/qcUtils/qcGtfAnnotationBuilder.scala
@@ -4,7 +4,7 @@ import internalUtils.commonSeqUtils._;
 import internalUtils.genomicUtils._;
 import internalUtils.genomicAnnoUtils._;
 import internalUtils.GtfTool._;
-import scala.collection.JavaConversions._
+//import scala.collection.JavaConversions._
 import internalUtils.Reporter._;
 import internalUtils.stdUtils._;
 import internalUtils.fileUtils._;
@@ -12,6 +12,7 @@ import internalUtils.commandLineUI._;
 
 import scala.collection.immutable.TreeSet;
 import internalUtils.optionHolder._;
+import scala.collection.JavaConverters._;
 
 import scala.collection.GenMap;
 
@@ -211,7 +212,7 @@ object qcGtfAnnotationBuilder {
       //if(gtfLine.featureType == codes.STD_EXON_TYPE_CODE){
       if(! geneOpt.isEmpty){
         val geneID = geneOpt.get;
-        if(! out.containsKey(geneID)){
+        if(! out.contains(geneID)){
           gtfLine.getAttribute(codes.BIOTYPE_ATTRIBUTE_KEY) match {
             case Some(b) => {
               bioset += b;
diff --git a/src/HartleyUtils/src/main/scala/qcUtils/qcInnerDistance.scala b/src/HartleyUtils/src/main/scala/qcUtils/qcInnerDistance.scala
index 856c315..f9e1088 100644
--- a/src/HartleyUtils/src/main/scala/qcUtils/qcInnerDistance.scala
+++ b/src/HartleyUtils/src/main/scala/qcUtils/qcInnerDistance.scala
@@ -9,8 +9,9 @@ import java.io.InputStream
 import java.io.ByteArrayInputStream
 import java.io.FileInputStream
 import java.io.File
-import scala.collection.JavaConversions._
+//import scala.collection.JavaConversions._
 import scala.collection.immutable.HashMap;
+import scala.collection.JavaConverters._;
 
 import net.sf.samtools._
 
@@ -193,7 +194,7 @@ object qcInnerDistance {
   }
   
   def getInsertSize_staggeredOverlap(rf : SAMRecord, rr : SAMRecord) : Int = {
-    val clipF = rf.getAlignmentBlocks.head.getReadStart() - 1;
+    val clipF = rf.getAlignmentBlocks.asScala.head.getReadStart() - 1;
     //val clipR = rr.getAlignmentBlocks.head.getReadStart() - 1;
     
     val startF = getAlignmentStart(rf);
@@ -271,7 +272,7 @@ object qcInnerDistance {
   }
   
   def getReadLengthToIntersect(rFirst : SAMRecord, rLast : SAMRecord) : Int = {
-    val abFirst = rFirst.getAlignmentBlocks.toSeq;
+    val abFirst = rFirst.getAlignmentBlocks.asScala.toSeq;
     val startLast = getAlignmentStart(rLast);
     //val clipLast = getLeadClipping(rLast);
     for(ab <- abFirst){
@@ -312,8 +313,8 @@ object qcInnerDistance {
    * (lengthToIntersect, overlapAmt, overlapSpliceCt, code)
    */  
   def getReadLengthToIntersectAndOtherInfo(r1 : SAMRecord, r2 : SAMRecord) : (Int, Int, Int, String) = {
-    val r1blocks = r1.getAlignmentBlocks.toVector;
-    val r2blocks = r2.getAlignmentBlocks.toVector;
+    val r1blocks = r1.getAlignmentBlocks.asScala.toVector;
+    val r2blocks = r2.getAlignmentBlocks.asScala.toVector;
     val (r1start, r1end) = ( getAlignmentStart(r1), getAlignmentEnd(r1) );
     val (r2start, r2end) = ( getAlignmentStart(r2), getAlignmentEnd(r2) );
     //val clipLast = getLeadClipping(rLast);
diff --git a/src/HartleyUtils/src/main/scala/runner/runner.scala b/src/HartleyUtils/src/main/scala/runner/runner.scala
index 5626121..c3af665 100644
--- a/src/HartleyUtils/src/main/scala/runner/runner.scala
+++ b/src/HartleyUtils/src/main/scala/runner/runner.scala
@@ -9,9 +9,9 @@ import internalUtils.commandLineUI._;
 
 object runner {
   
-  final val QORTS_VERSION = "1.2.42"; // REPLACE_THIS_QORTS_VERSION_VARIABLE_WITH_VERSION_NUMBER          (note this exact text is used in a search-and-replace. Do not change it.)
-  final val QORTS_COMPILE_DATE = "Fri Jun  2 12:23:55 EDT 2017"; // REPLACE_THIS_QORTS_DATE_VARIABLE_WITH_DATE          (note this exact text is used in a search-and-replace. Do not change it.)
-  final val QORTS_COMPILE_TIME : Long = 1496420635; // REPLACE_THIS_QORTS_DATE_VARIABLE_WITH_TIME          (note this exact text is used in a search-and-replace. Do not change it.)
+  final val QORTS_VERSION = "1.3.0"; // REPLACE_THIS_QORTS_VERSION_VARIABLE_WITH_VERSION_NUMBER          (note this exact text is used in a search-and-replace. Do not change it.)
+  final val QORTS_COMPILE_DATE = "Fri Oct 20 11:56:37 EDT 2017"; // REPLACE_THIS_QORTS_DATE_VARIABLE_WITH_DATE          (note this exact text is used in a search-and-replace. Do not change it.)
+  final val QORTS_COMPILE_TIME : Long = 1508514997; // REPLACE_THIS_QORTS_DATE_VARIABLE_WITH_TIME          (note this exact text is used in a search-and-replace. Do not change it.)
 
   final val QORTS_MAJOR_VERSION = QORTS_VERSION.split("\\.")(0);
   final val QORTS_MINOR_VERSION = QORTS_VERSION.split("\\.")(1);
diff --git a/src/QoRTs/DESCRIPTION b/src/QoRTs/DESCRIPTION
index 74d80d8..fbfc1cd 100644
--- a/src/QoRTs/DESCRIPTION
+++ b/src/QoRTs/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: QoRTs
-Version: 1.2.42
-Date: 2017-06-02
+Version: 1.3.0
+Date: 2017-10-20
 Title: Quality of RNA-seq Tool
 Authors@R: c(person("Stephen Hartley, PhD", "Developer", role = c("aut", "cre"),
                      email = "QoRTs-contact@list.nih.gov"))
diff --git a/src/QoRTs/R/internal.plotting.func.R b/src/QoRTs/R/internal.plotting.func.R
index ba0ff9a..6d6b459 100644
--- a/src/QoRTs/R/internal.plotting.func.R
+++ b/src/QoRTs/R/internal.plotting.func.R
@@ -2390,7 +2390,7 @@ makePlot.generic.points.right <- function(plot.name, tf.list, plotter, plot.type
 
 
 
-
+AUTOFIT.ITERATION.LIMIT <- 100;
 
 ########################################################################################################################
 ########################################################################################################################
@@ -2468,10 +2468,13 @@ internal.plot.legend <- function(plotter, legend.type, legend.pos,
       #isTooBig <- function(x){
       #  x$rect$w > abs(autofit.limits[1] - autofit.limits[2]) || x$rect$h > abs(autofit.limits[3] - autofit.limits[4]);
       #}
+      iterCt <- 0;
       if(isTooBig(x)){
         new.cex <- 1;
-        while(isTooBig(x)){
+        
+        while(isTooBig(x) && iterCt < AUTOFIT.ITERATION.LIMIT){
           new.cex <- new.cex * 0.9;
+          iterCt <- iterCt + 1;
           x <- legend(legend.pos,
                  legend=plotter$legend.params$name,
                  lty=plotter$legend.params$lines.lty, 
@@ -2486,9 +2489,10 @@ internal.plot.legend <- function(plotter, legend.type, legend.pos,
       } else {
         test.cex <- 1;
         new.cex <- 1;
-        while(! isTooBig(x)){
+        while(! isTooBig(x) && iterCt < AUTOFIT.ITERATION.LIMIT){
           new.cex <- test.cex;
           test.cex <- new.cex * 1.1;
+          iterCt <- iterCt + 1;
           x <- legend(legend.pos,
                  legend=plotter$legend.params$name,
                  lty=plotter$legend.params$lines.lty, 
diff --git a/src/QoRTs/R/minor.utils.R b/src/QoRTs/R/minor.utils.R
index c6d4ca5..6408c60 100644
--- a/src/QoRTs/R/minor.utils.R
+++ b/src/QoRTs/R/minor.utils.R
@@ -218,7 +218,7 @@ draw.logyaxis.stdScalePlot <- function(ylim, ylim.truncate, lwd, lwd.mini, tcl =
     ticks_log10 <-  ticks_log10[ticks_log10 >= ylim.truncate[1] & ticks_log10 <= ylim.truncate[2]];
   }
   
-  axis(side, at = decades_log10, labels=decade.labels, lwd = -1, lwd.ticks = lwd, tcl = tcl, las = 1, ...);
+  axis(side, at = decades_log10, labels=as.expression(decade.labels), lwd = -1, lwd.ticks = lwd, tcl = tcl, las = 1, ...);
   axis(side, at = ticks_log10, labels=FALSE, lwd = -1, lwd.ticks = lwd.mini, tcl = tcl / 2, ...);
 }
 
@@ -630,6 +630,8 @@ reportMemoryUsage <- function(res){
 ####################################################################################
 ###   Text fitting functions:
 
+AUTOFIT.ITERATION.LIMIT <- 100;
+
 title.autofit.main <- function(main = NULL, cex = par("cex.main"), ...){
   if(! is.null(main)){
     cex <- fit.title(title.text = main, cex.main = cex);
@@ -702,9 +704,11 @@ strheightSRT90 <- function(s, cex = NULL, ...){
 
 shrink.character.vector.VERT <- function(strs, curr.cex, max.height){
   curr.height <- max(strheightSRT90(strs, cex = curr.cex))
-  while(curr.height > max.height){
+  iterCt <- 0;
+  while(curr.height > max.height && iterCt < AUTOFIT.ITERATION.LIMIT){
     curr.cex <- curr.cex * 0.9
     curr.height <- max(strheightSRT90(strs, cex = curr.cex))
+    iterCt <- iterCt + 1;
   }
   return(curr.cex)
 }
diff --git a/src/QoRTs/man/makePlot.overlap.Rd b/src/QoRTs/man/makePlot.overlap.Rd
index 2fa4f8b..7ea5ab3 100644
--- a/src/QoRTs/man/makePlot.overlap.Rd
+++ b/src/QoRTs/man/makePlot.overlap.Rd
@@ -42,6 +42,19 @@
                                 plot = TRUE,
                                 ...)
                                 
+  makePlot.overlapMismatch.byCycle(plotter,
+                                   plot.rates = TRUE, 
+                                   noIndel = TRUE, 
+                                   log.y = TRUE,
+                                   singleEndMode = plotter$res@singleEnd,
+                                   rasterize.plotting.area = FALSE, 
+                                   raster.height = 1000, 
+                                   raster.width = 1000,
+                                   debugMode,
+                                   r2.buffer,
+                                   plot = TRUE,
+                                   ...)
+  
   makePlot.overlapMismatch.byQual.min(plotter,
                                       plot.rates = TRUE,
                                       log.y = TRUE,
@@ -204,6 +217,7 @@
   plotter <- build.plotter.colorByGroup(res);
   makePlot.overlap.coverage(plotter)
   makePlot.overlapMismatch.size(plotter)
+  makePlot.overlapMismatch.byCycle(plotter)
   makePlot.overlapMismatch.byQual.min(plotter)
   makePlot.overlapMismatch.byQual.read(plotter)
   makePlot.overlapMismatch.byBase(plotter)