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biozone.f
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biozone.f
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subroutine biozone()
!! ~ ~ ~ PURPOSE ~ ~ ~
!! This subroutine conducts biophysical processes occuring
!! in the biozone layer of a septic HRU.
!! ~ ~ ~ INCOMING VARIABLES ~ ~ ~
!! name |units |definition
!! ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~
!! bio_bd(:) |kg/m^3 |density of biomass
!! bio_bod(:) |kg/ha |BOD concentration in biozone
!! biom(:) |kg/ha |biomass of live bacteria in biozone
!! bz_thk(:) |mm |thickness of biozone
!! coeff_bod_dc(:) |m^3/day |BOD decay rate coefficient
!! coeff_bod_conv(:)|none |BOD to live bacteria biomass conversion factor
!! coeff_denitr(:) |none |Denitrification rate coefficient
!! coeff_fc1(:) |none |field capacity calibration parameter 1
!! coeff_fc2(:) |none |field capacity calibration parameter 2
!! coeff_fecal(:) |m^3/day |Fecal coliform bacteria decay rate coefficient
!! coeff_mrt(:) |none |mortality rate coefficient
!! coeff_nitr(:) |none |Nitrification rate coefficient
!! coeff_plq(:) |none |Conversion factor for plaque from TDS
!! coeff_rsp(:) |none |respiration rate coefficient
!! coeff_slg1(:) |none |slough-off calibration parameter
!! coeff_slg2(:) |none |slough-off calibration parameter
!! fcoli(:) |cfu/100ml |concentration of the fecal coliform in the biozone
!! | |septic tank effluent
!! ihru |none |HRU number
!! iida |day |day being simulated
!! i_sep(:) |none |soil layer where biozone exists
!! isep_typ(:) |none |Septic system type
!! isep_opt(:) |none |Septic system operation flag (1=active,2=failing,0=not operated)
!! plqm |kg/ha |plaque in biozone
!! rbiom(:) |kg/ha |daily change in biomass of live bacteria
!! rplqm |kg/ha |daily change in plaque
!! sepday |mm H2O |percolation from soil layer
!! sol_bd(:,:) |Mg/m**3 |bulk density of the soil
!! sol_fc(:,:) |mm H2O |amount of water available to plants in soil
!! |layer at field capacity (fc - wp),Index:(layer,HRU)
!! sol_fon(:,:) |kg N/ha |amount of nitrogen stored in the fresh
!! |organic (residue) pool
!! sol_fop(:,:) |kg P/ha |amount of phosphorus stored in the fresh
!! |organic (residue) pool
!! sol_k(:,:) |mm/hr |saturated hydraulic conductivity of soil
!! |layer. Index:(layer,HRU)
!! sol_nh3(:,:) |kg N/ha |amount of nitrogen stored in the ammonium
!! |pool in soil layer
!! sol_nly(:) |none |number of soil layers
!! sol_no3(:,:) |kg N/ha |amount of nitrogen stored in the
!! |nitrate pool in soil layer
!! sol_orgn(:,:) |kg N/ha |amount of nitrogen stored in the stable
!! |organic N pool
!! sol_orgp(:,:) |kg P/ha |amount of phosphorus stored in the organic
!! |P pool
!! sol_por(:,:) |none |total porosity of soil layer expressed as a
!! |fraction of the total volume, Index:(layer,HRU)
!! sol_solp(:,:) |kg P/ha |amount of phosohorus stored in solution
!! sol_st(:,:) |mm H2O |amount of water stored in the soil layer
!! |on any given day (less wp water)
!! sol_ul(:,:) |mm H2O |amount of water held in the soil layer at
!! |saturation (sat - wp water)
!! sol_up(:,:) |mm H2O/mm soil|water content of soil at -0.033 MPa (field
!! |capacity)
!! sol_z(:,:) |mm |depth to bottom of soil layer,Index:(layer,HRU)
!! sptqs(:) |m3/d/cap |Flow rate of the septic tank effluent
!! | |per capita
!! sptbodconcs(:) |mg/l |Biological Oxygen Demand of the septic
!! | |tank effluent
!! spttssconcs(:) |mg/l |Concentration of total suspended solid in the
!! | |septic tank effluent
!! spttnconcs(:) |mg/l |Concentration of total nitrogen
!! | |in the septic tank effluent
!! sptnh4concs(:) |mg/l |Concentration of total phosphorus
!! | |of the septic tank effluent
!! sptno3concs(:) |mg/l |Concentration of nitrate
!! | |in the septic tank effluent
!! sptno2concs(:) |mg/l |Concentration of nitrite
!! | |in the septic tank effluent
!! sptorgnconcs(:) |mg/l |Concentration of organic nitrogen in
!! | |the septic tank effluent
!! spttpconcs(:) |mg/l |Concentration of total phosphorus in
!! | |the septic tank effluent
!! sptminps(:) |mg/l |Concentration of mineral phosphorus in
!! | |the septic tank effluent
!! sptorgps(:) |mg/l |concentration of organic phosphorus in the
!! | |septic tank effluent
!! sptfcolis(:) |cfu/100ml |concentration of the facel caliform in the
!! | |septic tank effluent
!! ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~
!! ~ ~ ~ OUTGOING VARIABLES ~ ~ ~
!! name |units |definition
!! ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~
!! |none |
!! ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~
!! ~ ~ ~ LOCAL DEFINITIONS ~ ~ ~
!! name |units |definition
!! ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~
!! bod_rt |1/day |BOD reaction rate
!! bz_lyr |none |soil layer where biozone exists
!! bz_vol |m^3 |volume of biozone
!! dentr_rt |1/day |denitrification reaction rate
!! fcoli_rt |1/day |fecal coliform reaction rate
!! isp |none |type of septic system for current hru
!! ntr_rt |1/day |nitrification reaction rate
!! rbod |mg/l |daily change in bod concentration
!! rdenit |kg/ha |denitrification during the day
!! rfcoli |cfu/100ml |daily change in fecal coliform
!! rmort |kg/ha |daily mortality of bacteria
!! rnit |kg/ha |nitrification during the day
!! rrsp |kg/ha |daily resparation of bacteria
!! rslg |kg/ha |daily slough-off bacteria
!! rtof |none |weighting factor used to partition the
!! |organic N & P concentration of septic effluent
!! |between the fresh organic and the stable
!! |organic pools
!! ~ ~ ~ ~ ~ ~ END SPECIFICATIONS ~ ~ ~ ~ ~ ~
!! Coded by J.Jeong and C.Santhi. BRC, Temple TX
!! Septic algorithm adapted from Siegrist et al., 2005
use parm
implicit none
! real ntr_rt
integer bz_lyr, isp, ii,j,nly
real*8 bz_vol, rtrate,bodconc, qin, qout,qmm,qvol,pormm,rplqm
real*8 ntr_rt,dentr_rt, bod_rt, fcoli_rt,rtof,xx,bodi,bode
real*8 rnit, rdenit, rbio, rmort, rrsp, rslg, rbod, rfcoli
real*8 nh3_begin, nh3_end, nh3_inflw_ste, no3_begin, no3_end
real*8 no3_inflow_ste, bio_steintobz,bio_outbz,bza,qi,nperc
real*8 nh3_init, no3_init, hvol, solpconc, solpsorb, qlyr,qsrf
real*8 n1,n2,n3,n4,n5,n6,n7,n8,p1,p2,p3,p4
real*8 solp_init,solp_begin,solp_end,svolp,totalp,ctmp
j = ihru
nly = sol_nly(j)
isp = isep_typ(j) !! J.Jeong 3/09/09
bz_lyr = i_sep(j)
bza = hru_ha(j)
bz_vol = bz_thk(j) * bza * 10. !m^3
qlyr = qstemm(j)
qsrf = 0
!temperature correctioin factor for bacteria growth/dieoff (Eppley, 1972)
ctmp = thbact ** (sol_tmp(bz_lyr,j) - 20.)
! initial water volume
qi = (sol_st(bz_lyr,j)+sol_prk(bz_lyr-1,j)+qstemm(j)) * bza * 10. !m3
! STE volume
qin = qstemm(j) * bza * 10. ! m^3
! leaching to sub layer
qout = bz_perc(j) * bza * 10. !m3/d
! final volume
hvol = sol_st(bz_lyr,j) * bza * 10.
rtof = 0.5
nh3_init = sol_nh3(bz_lyr,j)
no3_init = sol_no3(bz_lyr,j)
solp_init = sol_solp(bz_lyr,j)
!! Failing system: STE saturates upper soil layers
if (isep_opt(j)==2) then
! increment the number of failing days
if(sep_tsincefail(j)>0) sep_tsincefail(j) = sep_tsincefail(j) + 1
! convert the failing system into an active system if duration of failing ends
if (sep_tsincefail(j) >= isep_tfail(j)) then
isep_opt(j) = 1
sol_ul(bz_lyr,j)=bz_thk(j)*(sol_por(bz_lyr,j)-sol_wp(bz_lyr,j))
sol_fc(bz_lyr,j)=bz_thk(j)*(sol_up(bz_lyr,j)-sol_wp(bz_lyr,j))
sol_nh3(bz_lyr,j) = 0
sol_no3(bz_lyr,j) = 0
sol_orgn(bz_lyr,j) = 0
sol_orgp(bz_lyr,j) = 0
sol_fop(bz_lyr,j) = 0
sol_solp(bz_lyr,j) = 0
sol_actp(bz_lyr,j) = 0
biom(j) = 0
plqm(j) = 0
bio_bod(j) = 0
fcoli(j) = 0
sep_tsincefail(j) = 0
end if
return
endif
!! Active system
!! Water content(eqn 4-12), biozone hydraulic conductivity(eqn 4-9),
!! and percolation (eqn 4-8,10,11) are computed in percmain/percmicro
! Add STE nutrients to appropriate soil pools in mass unit
xx = qin / bza / 1000. ! used for unit conversion: mg/l -> kg/ha
sol_no3(bz_lyr,j) = sol_no3(bz_lyr,j) + xx * (sptno3concs(isp) +
& sptno2concs(isp))
sol_nh3(bz_lyr,j) = sol_nh3(bz_lyr,j) + xx * sptnh4concs(isp)
sol_orgn(bz_lyr,j) = sol_orgn(bz_lyr,j)+xx*sptorgnconcs(isp)*rtof
sol_fon(bz_lyr,j)=sol_fon(bz_lyr,j)+xx*sptorgnconcs(isp)*(1-rtof)
sol_orgp(bz_lyr,j)=sol_orgp(bz_lyr,j)+xx*sptorgps(isp)*rtof
sol_fop(bz_lyr,j)=sol_fop(bz_lyr,j)+xx*sptorgps(isp)*(1-rtof)
sol_solp(bz_lyr,j)=sol_solp(bz_lyr,j)+xx*sptminps(isp)
bio_bod(j)=bio_bod(j)+xx*sptbodconcs(isp) ! J.Jeong 4/03/09
bodi = bio_bod(j) * bza / qi * 1000. !mg/l
!! Field capacity in the biozone Eq. 4-6 !
sol_fc(bz_lyr,j) = sol_fc(bz_lyr,j) + coeff_fc1(j) *
& (sol_ul(bz_lyr,j) - sol_fc(bz_lyr,j)) ** coeff_fc2(j)
& * rbiom(j) / (bio_bd(j) * 10)
!! Saturated water content in the biozone - Eq. 4-7
! mm = mm - kg/ha / (kg/m^3 * 10)
sol_ul(bz_lyr,j)=sol_por(bz_lyr,j)*bz_thk(j)-plqm(j)
&/(bio_bd(j)*10.)
if(sol_ul(bz_lyr,j).le.sol_fc(bz_lyr,j)) then
sol_ul(bz_lyr,j) = sol_fc(bz_lyr,j)
isep_opt(j) = 2
failyr(j) = iida/365. + curyr - 1
endif
!! Respiration rate(kg/ha) Eq. 4-2
rrsp = ctmp * coeff_rsp(j) * biom(j)
!! Mortality rate(kg/ha) Eq. 4-3
rmort = ctmp * coeff_mrt(j) * biom(j)
!! Slough-off rate(kg/ha)
rslg = coeff_slg1(j) * bz_perc(j) ** coeff_slg2(j) * biom(j)
!! Build up of plqm(kg/ha) Eq.4-5
! kg/ha (perday) = kg/ha + dimensionless * m^3/d * mg/l / (1000*ha)
rplqm = (rmort - rslg) + coeff_plq(j) * qin *
& spttssconcs(isp) / (1000. * bza)
rplqm = max(0.,rplqm)
!! Add build up to plqm ! kg/ha = kg/ha + kg/ha
plqm(j) = plqm(j) + rplqm
! bio_steintobz = coeff_bod_conv(j) * qvol * sptbodconcs(isp) / (1000. * bza)
! bio_outbz = coeff_bod_conv(j) * qout * bodconc / (1000. * bza) + (rrsp + rmort + rslg)
nh3_inflw_ste = xx * sptnh4concs(isp)
no3_inflow_ste = xx * (sptno3concs(isp) + sptno2concs(isp))
nh3_begin = sol_nh3(bz_lyr,j)
no3_begin = sol_no3(bz_lyr,j)
solp_begin = sol_solp(bz_lyr,j)
!! Add STE f.coli concentration by volumetric averaging
xx = 10.* sol_st(bz_lyr,j) * bza / (qin
& + 10.* sol_st(bz_lyr,j) * bza)
fcoli(j) = fcoli(j) * xx + sptfcolis(isp) * (1.- xx) ! J.Jeong 3/09/09
!! nutrients reaction rate (Equation 4-13)
rtrate = biom(j) * bza / (bz_vol * sol_por(bz_lyr,j))
!! BOD (kg/ha) 4-14 !
bod_rt = max(0.,coeff_bod_dc(j) * rtrate) !bod
if (bod_rt>4) bod_rt=4
rbod = bodi * (1.- Exp(-bod_rt))
bode = bodi - rbod !mg/l
bio_bod(j) = bode * (sol_st(bz_lyr,j)*10)/1000. !kg/ha
!! Fecal coliform(cfu/100ml) Eq 4-14, J.Jeong 3/09/09
fcoli_rt = max(0.,coeff_fecal(j) * rtrate) !fecal coliform
rfcoli = fcoli(j) * (1.- exp(-fcoli_rt))
fcoli(j) = fcoli(j) - rfcoli
!! change in nh3 & no3 in soil pools due to nitrification(kg/ha) Eq.4-13, 4-14
ntr_rt = max(0.,coeff_nitr(j) * rtrate) !nitrification
rnit = sol_nh3(bz_lyr,j) * (1. - Exp(-ntr_rt)) !! J.Jeong 4/03/09
sol_nh3(bz_lyr,j) = sol_nh3(bz_lyr,j) - rnit !J.Jeong 3/09/09
sol_no3(bz_lyr,j) = sol_no3(bz_lyr,j) + rnit !J.Jeong 3/09/09
!ammonium percolation
nperc = 0.2 * qout / qi * sol_nh3(bz_lyr,j)
nperc = min(nperc,0.5*sol_nh3(bz_lyr,j))
sol_nh3(bz_lyr,j) = sol_nh3(bz_lyr,j) - nperc
sol_nh3(bz_lyr+1,j) = sol_nh3(bz_lyr+1,j) + nperc
!! denitrification,(kg/ha) Eq 4-14
dentr_rt = max(0.,coeff_denitr(j) * rtrate) !denitrification
rdenit = sol_no3(bz_lyr,j) * (1. - Exp(-dentr_rt)) !J.Jeong 3/09/09
sol_no3(bz_lyr,j) = sol_no3(bz_lyr,j) - rdenit !J.Jeong 3/09/09
!soil volume for sorption: soil thickness below biozone
svolp = (sol_z(nly,j) - bz_z(j)) * bza * 10. !m3,
!max adsorption amnt: linear isotherm, McCray 2005
solpconc = sol_solp(bz_lyr,j) * bza / qi * 1000. !mg/l
solpsorb = min(coeff_pdistrb(j) * solpconc,coeff_psorpmax(j)) !mgP/kgSoil
solpsorb = 1.6 * 1.e-3 * solpsorb * svolp * (1-sol_por(bz_lyr,j)) !kgP sorption potential
!check if max. P sorption is reached
if(sol_solp(bz_lyr,j)*bza<solpsorb) then
totalp = sol_solp(bz_lyr,j)+sol_actp(bz_lyr,j) !+sol_stap(bz_lyr,j)
solp_end = coeff_solpslp(j) * totalp + coeff_solpintc(j)
if (solp_end>sol_solp(bz_lyr,j)) then
solp_end = sol_solp(bz_lyr,j)
endif
sol_actp(bz_lyr,j)=sol_actp(bz_lyr,j)+sol_solp(bz_lyr,j)-solp_end
sol_solp(bz_lyr,j) = solp_end
endif
solpconc = sol_solp(bz_lyr,j) * bza / qi * 1000. !mg/l
percp(j) = 0.01*solpconc * qout / bza * 1.e-3
sol_solp(bz_lyr,j) = sol_solp(bz_lyr,j) - percp(j) !kg/ha
sol_solp(bz_lyr+1,j) = sol_solp(bz_lyr+1,j) + percp(j) !kg/ha
nh3_end = sol_nh3(bz_lyr,j)
no3_end = sol_no3(bz_lyr,j)
solp_end = sol_solp(bz_lyr,j)
!! daily change in live bacteria biomass(kg/ha) Eq. 4-1
! kg/ha = m^3 * mg/L/(1000.*ha)6
rbiom(j) = ctmp * coeff_bod_conv(j)*(qin*sptbodconcs(isp)-qout
& * bode) / (1000. * bza) - (rrsp + rmort + rslg)
rbiom(j) = max(1.e-06,rbiom(j))
!! total live biomass in biozone(kg/ha)
biom(j) = biom(j) + rbiom(j)
!! summary calculations
if (curyr > nyskip) then
wshd_nitn = wshd_nitn + rnit * hru_dafr(j)
wshd_dnit = wshd_dnit + rdenit * hru_dafr(j)
wshd_plch = wshd_plch + percp(j) * hru_dafr(j)
wdntl = wdntl + rdenit
end if
!! print out time seriese results. header is in "readfile.f"
if(curyr>nyskip) then
n1=nh3_init
n2=nh3_begin
n3=nh3_end
n4=no3_init
n5=no3_begin
n6=no3_end !*bza/hvol*1000
n7=rnit
n8=rdenit
p1=solp_init
p2=solp_begin
p3=solp_end
p4 = solpconc
write(173,1000) ihru,iyr,iida,precipday,qout,sol_ul(bz_lyr,j),
& sol_st(bz_lyr,j),sol_fc(bz_lyr,j),n1,n2,n3,n4,n5,n6,
& n7,n8,p1,p2,p3,p4
endif
!! output.std variables added 03/01/2011 jga
wshd_sepno3 = wshd_sepno3 + xx * (sptno3concs(isp) +
& sptno2concs(isp)) * hru_dafr(j)
wshd_sepnh3 = wshd_sepnh3 + xx * sptnh4concs(isp) * hru_dafr(j)
wshd_seporgn = wshd_seporgn + xx * sptorgnconcs(isp) *
& rtof * hru_dafr(j)
wshd_sepfon = wshd_sepfon + xx * sptorgnconcs(isp)*
& (1.-rtof) * hru_dafr(j)
wshd_seporgp = wshd_seporgp + xx * sptorgps(isp) *
& rtof * hru_dafr(j)
wshd_sepfop = wshd_sepfop + xx * sptorgps(isp) *
& (1.-rtof) * hru_dafr(j)
wshd_sepsolp = wshd_sepsolp + xx * sptminps(isp) * hru_dafr(j)
wshd_sepbod = wshd_sepbod + xx * sptbodconcs(isp) * hru_dafr(j)
wshd_sepmm = wshd_sepmm + qstemm(j) * hru_dafr(j)
!! output.std variables added 03/01/2011 jga
1000 format(3i5,50es15.4)
return
end