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README
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README
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Welcome OpenCB 'bioinfo-libs' library
'bioinfo-libs' is a C library with bioinformatic data format parsers and BWT and SW aligners. It's part of HPG project.
COMPONENTS
This library consist of:
* several data format parsers: gff, bam, vcf, bed, ...
* HPC implementation of two widely used sequence aligners: Burrows-Whheler Transform (BWT) and Smith-Waterman (SW)
CONTACT
You can contact any of the following developers:
* Joaquin Tarraga ([email protected])
* Cristina Y. Gonzalez ([email protected])
* Ignacio Medina ([email protected])
BUILDING
Scons is used as building system, to build the library download 'next' branch (for the most recent library) and execute:
$ scons
GCC4.4+ is the only requirement.
DOCUMENTATION
You can find more info about HPG project and bioinfo-libs at:
http://wiki.opencb.org/projects/hpg/doku.php