pyproject.toml

[build-system]
requires = ["setuptools>=45", "setuptools_scm[toml]>=6.2"]
build-backend = "setuptools.build_meta"

[project]
name = "hdmf_ai"
authors = [
  { name="Ryan Ly", email="rly@lbl.gov" },
  { name="Andrew Tritt", email="ajtritt@lbl.gov" },
]
description = "A schema and API for storing the results from AI/ML workflows"
readme = "README.md"
requires-python = ">=3.7"
license = {text = "BSD-3-Clause-LBNL"}
classifiers = [
    "Programming Language :: Python",
    "Programming Language :: Python :: 3.7",
    "Programming Language :: Python :: 3.8",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "License :: OSI Approved :: BSD License",
    "Development Status :: 4 - Beta",
    "Operating System :: OS Independent",
    "Intended Audience :: Developers",
    "Intended Audience :: Science/Research",
    "Topic :: Scientific/Engineering :: Medical Science Apps.",
]
keywords = [
    "python",
    "cross-platform",
    "open-data",
    "data-format",
    "open-source",
    "open-science",
    "reproducible-research",
    "artificial-intelligence",
    "machine-learning",
    "data-standards",
]
dependencies = [
    "hdmf>=3.5.1",
    "numpy>=1.21",
    "scikit-learn>=1",
]
version = "0.3.0"
# dynamic = ["version"]

[project.urls]
"Homepage" = "https://github.com/hdmf-dev/hdmf-ai"
"Bug Tracker" = "https://github.com/hdmf-dev/hdmf-ai/issues"

[tool.setuptools.package-data]
hdmf = ["src/hdmf_ai/schema/*.yaml"]

# [tool.mypy]
# no_incremental = true  # needed b/c mypy and ruamel.yaml do not play nice. https://github.com/python/mypy/issues/12664

# [tool.interrogate]
# fail-under = 95
# verbose = 1

[tool.pytest.ini_options]
addopts = "--cov --cov-report html"
norecursedirs = "tests/unit/helpers"

[tool.codespell]
skip = "htmlcov,.git,.mypy_cache,.pytest_cache,.coverage,*.pdf,*.svg,venvs,.tox,./docs/_build/*,*.ipynb"
ignore-words-list = "datas"

[tool.coverage.run]
branch = true
source = ["src/hdmf_ai/"]

[tool.coverage.report]
exclude_lines = [
    "pragma: no cover",
    "@abstract"
]

[tool.setuptools_scm]

[tool.black]
line-length = 120
preview = true
exclude = ".git|.mypy_cache|.tox|.venv|venv|.ipynb_checkpoints|_build/|dist/|__pypackages__|.ipynb"
# force-exclude = "docs/gallery"

[tool.ruff]
line-length = 120

[tool.ruff.lint]
select = ["E", "F", "T100", "T201", "T203"]
exclude = [
  ".git",
  ".tox",
  "__pycache__",
  "build/",
  "dist/",
  "docs/source/conf.py",
  "docs/source/tutorials/",
  "docs/_build/",
]

[tool.ruff.lint.per-file-ignores]
"src/hdmf_ai/__init__.py" = ["E402", "F401"]
"example.py" = ["E501", "T201"]

[tool.ruff.lint.mccabe]
max-complexity = 17