layout	title
default	Schedule - scRNAseq course

OBS! Schedule is preliminary and may be subject to changes!

Lecture slides will be provided as links as they get completed.

Time	Description	Lecturer
09.00	Course introduction	Åsa & Paulo
09.30	scRNAseq methodologies and ESCG platform	Henrik Gezelius
10.30	Break
11.00	scRNAseq Quality Control	Åsa Björklund
12.00	Lunch
13.00	Intro to exercises	Åsa Björklund
13.30	Exercises: Quality control	Åsa, Paulo, Jakub
15.00	Break
15.30	Data normalization	Åsa Björklund
16.30	Wrap up session	Åsa & Paulo

Time	Description	Lecturer
09.00	Dimensionality reduction	Paulo Czarnewski
10.00	Break
10.30	Exercises: Dimensionality reduction	Åsa, Paulo
12.00	Lunch
13.00	Batch correction + Data integration	Paulo Czarnewski
14.00	Exercises: Data integration	Åsa, Paulo
15.00	Break
15.30	Clustering techniques and scRNAseq toolkits	Åsa Björklund
16.30	Wrap up session	Åsa & Paulo
18.00	Course Dinner (Shanti touch of Bengali)

Time	Description	Lecturer
09.00	Exercises: Clustering	Åsa, Paulo
10.00	Break
10.30	Invited Lecturer: Single cell Epigenetics	Jakub Westholm
12.00	Lunch
13.00	Differential gene expression	Vincent van Hoef
14.00	Gene Set Analysis	Paulo Czarnewski
14.30	Break
15.00	Exercises: Differential expression	Åsa, Paulo
16.30	Wrap up session	Åsa & Paulo

Time	Description	Lecturer
09.00	Invited Lecture: Celltype prediction	Ahmed Mahfouz
10.00	Break
10.30	Exercises: Celltype prediction	Åsa, Paulo
12.00	Lunch
13.00	Invited Lecture: Spatial Transcriptomics	Alma Andersson
14.00	Exercises: Spatial Transcriptomics	Åsa, Paulo
15.00	Break
16.30	Wrap up session	Åsa & Paulo

Time	Description	Lecturer
9.00	Trajectory inference analysis	Paulo Czarnewski
10.00	Break
10.15	Exercises: Trajectory inference	Åsa, Paulo
11.30	Summary of exercises	Åsa & Paulo
12.00	Lunch
13.00	Wrap up and Course Summary	Åsa & Paulo

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