devices.tsv

ontology ID	label	editor preferred term	has curation status	alternative term	definition	definition source	example of usage	term editor	editor note	curator note	ontology term requester	term tracker item	logical type	parent class	function	has part	part of	manufactured by	associated axioms
ID	LABEL	A editor preferred term	AI has curation status	A alternative term SPLIT=|	AL definition@en	A definition source SPLIT=|	A example of usage SPLIT=|	A term editor SPLIT=|	A editor note SPLIT=|	A curator note SPLIT=|	A ontology term requester	A term tracker item	CLASS_TYPE	C %	C 'has function' some % SPLIT=|	C 'has part' some % SPLIT=|	C 'part of' some %	C is_manufactured_by value %	C % SPLIT=|
OBI:0000038	chromatography column	chromatography column	metadata incomplete		Chromatography column in chemistry is a tube and contents (typically glass) used to purify individual chemical compounds from mixtures of compounds. It is often used for preparative applications on scales from micrograms up to kilograms.	http://en.wikipedia.org/wiki/Column_chromatography		Frank Gibson		open tracker https://sourceforge.net/tracker/index.php?func=detail&aid=2881353&group_id=177891&atid=886178				device	('material separation function' and ('realized in' only 'preparative chromatography'))	container			
OBI:0000041	pump valve switch	pump valve switch	metadata incomplete		A pump valve switch is a cardinal part of a liquid chromatography instrument that controls the flow.	OBI		OBI Instrument branch	FG:I would assume this should be a pump valve control switch and it would not be specific to a liquid chromatography instrument					device	mechanical function				
OBI:0000048	chromatography device	chromatography device	metadata complete	chromatography instrument	A device that facilitates the separation of mixtures. The function of a chromatography device involves passing a mixture dissolved in a ""mobile phase"" through a stationary phase, which separates the analyte to be measured from other molecules in the mixture and allows it to be isolated.	http://en.wikipedia.org/wiki/Chromatography		Frank Gibson		open tracker https://sourceforge.net/tracker/index.php?func=detail&aid=2881353&group_id=177891&atid=886178				device	contain function|environment control function|measure function|material separation function				
OBI:0000049	mass spectrometer	mass spectrometer	ready for release		A mass spectrometer is an instrument which is used to measure the mass to charge ratio of ions. All mass spectrometers consist of three basic parts: an ion source, a mass analyzer, and a detector system. The stages within the mass spectrometer are: 1. Production of ions from the sample 2. Separation of ions with different masses 3. Detection of the number of ions of each mass produced 4.Collection of data to generate the mass spectrum	http://en.wikipedia.org/wiki/Mass_spectrometry	LCQ Fleet Ion Trap MSn manufactured by thermo fisher scientific	Frank Gibson						device	measure function	mass analyzer|ion source|ion detector			
OBI:0000051	liquid chromatography mass spectrometry platform	liquid chromatography mass spectrometry platform	metadata incomplete		A liquid chromatography mass spectrometry platform is a platform that is the collection of instrument, software and reagents needed to perform a liquid chromatography mass spectrometry protocol. definition_source: OBI.	OBI Instrument branch		OBI instrument branch						device	measure function|material separation function	chromatography device|mass spectrometer			
OBI:0000052	microarray platform	microarray platform	metadata incomplete		A microarray platform is a platform that contains the instruments, software and reagents needed to perform a microarray protocol. definition_source: OBI.	OBI Instrument branch		OBI Instrument branch						device	environment control function	microarray			
OBI:0000059	gamma counter	gamma counter	ready for release		A processed material which measures gamma radiation	http://en.wikipedia.org/wiki/Gamma_counter	A Geiger counter	Frank Gibson						device	measure function				
OBI:0000084	polystyrene tube	polystyrene tube	ready for release		A polystyrene tube is a test tube made of polystyrene	PERSON: Chris Stoeckert	Polystyrene tubes can be used  to contain tissue culture cells during centrifgation	PERSON: Chris Stoeckert						test tube					
OBI:0000136	incubator	incubator	metadata complete		A device in which environmental conditions (light, photoperiod, temperature, humidity, etc.) can be controlled	http://www.medterms.com/script/main/art.asp?articlekey=18426	Incubators are used in microbiology for culturing (growing) bacteria and other microorganisms. Incubators in tissue culture rooms are used for culturing stem cells, lymphocytes, skin fibroblasts and other types of cells	Frank Gibson						device	environment control function				
OBI:0000146	supernatant collection system harvesting frame	supernatant collection system harvesting frame	metadata complete		A device that is designed for collecting 90% of the supernatant in a microplate well and separating the living cell with no stress, eliminating centrifugation and other similar techniques. It can be used in a variety of release assays with different radioactive isotopes, such as Cr51 or I125.	google		Daniel Schober						device	contain function				
OBI:0000151	filter paper	filter paper	metadata complete		A device manufacture with the intent to provide a porous unsized paper used for filtering.	sep:00107		Frank Gibson						device	filter function				
OBI:0000192	microtiter plate	microtiter plate	ready for release	microplate	A microtiter_plate is a flat plate with multiple wells used as small test tubes.	http://en.wikipedia.org/wiki/Microtiter_plate	A microtiter plate with 6, 24, 96, 384 or 1536 sample wells used in the enzyme-linked immunosorbent assay (ELISA)	Melanie Courtot						device	contain function				
OBI:0000345	mass analyzer	mass analyzer	metadata complete		A Mass analyzer is a device that separates ions according to their mass-to-charge ratio. All mass spectrometers are based on dynamics of charged particles in electric and magnetic fields in vacuum where the two laws of Lorentz force law and Newton's second law of motion apply.	http://en.wikipedia.org/wiki/Mass_spectrometry#Mass_analyzer	The mass analyzer of the Voyager-DE(tm) STR Biospectrometry Workstation	PERSON: Daniel Schober|Frank Gibson						device	measure function|material separation function				
OBI:0000361	ion source	ion source	ready for release		An ion source is a device that is part of a mass spectrometer that ionizes the material under analysis. The ions are then transported by magnetic or electric fields to the mass analyzer.  Techniques for ionization have been key to determining what types of samples can be analyzed by mass spectrometry. Electron ionization and chemical ionization are used for gases and vapors. In chemical ionization sources, the material is ionized by chemical ion-molecule reactions during collisions in the source. Two techniques often used with liquid and solid biological samples include electrospray ionization (due to John Fenn PMID 2675315.) and matrix-assisted laser desorption/ionization (MALDI, due to M. Karas and F. Hillenkamp (Measuring Mass: From Positive Rays to Proteins by Michael A. Grayson (Editor) (ISBN 0-941901-31-9))).	http://en.wikipedia.org/wiki/Mass_spectrometry#Ion_source	The ion source of a Voyager-DE??? STR Biospectrometry Workstation	Frank Gibson						device	ionization function				
OBI:0000364	ion detector	ion detector	ready for release		An ion detector is a device that measures and records the charge induced or current produced when an ion passes by or hits a surface.  Example: In a scanning instrument the signal produced in the detector during the course of the scan versus where the instrument is in the scan (at what m/Q) will produce a mass spectrum, a record of ions as a function of m/Q.	http://en.wikipedia.org/wiki/Mass_spectrometry#Detector	The ion detector of the Voyager-DE(tm) STR Biospectrometry Workstation	Frank Gibson						device	measure function				
OBI:0000389	isoelectric focusing device	isoelectric focusing device	metadata complete	isoelectric focusing unit	An isoelectric focusing device is a device in which isoelectric focusing can be performed. An isoelectric focussing device had the function to contain and control the contained environment and transfer electrical energy from a power supply to a separation medium and the charged material to be separated.	sep:00097		Frank Gibson						device	transfer function|contain function|environment control function				
OBI:0000390	thermostatic circulator	thermostatic circulator	metadata complete		A thermostatic circulator is a device which cools or heats a circulating liquid. It has the function to contain control the contained environment and transfer energy from or to the circulating liquid	sep:00098		Frank Gibson						device	contain function|environment control function				
OBI:0000394	blot module	blot module	metadata incomplete		A blot module is a device which has the function to conatin and facilitate the material transfer process blotting to be realised	sep:00092		Frank Gibson						device	transfer function				
OBI:0000398	image creation device	image acquisition device	metadata incomplete	image acquisition device	An image creation device is a device which captures a digitized image of an object	sep:00096		Frank Gibson					equivalent	device	image acquisition function				
OBI:0000404	gel dryer	gel dryer	metadata complete		A gel dryer is a device which has the function to contain and to control the contained environment to facilitate the drying of gels	sep:00094		Frank Gibson						device	contain function|environment control function				
OBI:0000422	syringe	syringe	ready for release		A processed material which is used to introduce or draw fluids from a material entity. A syringe is made of a piston and body. the movement of the piston in the body determines the amount/volume of fluid to inject or draw	OBI Instrument adapted from Wikipedia	Accuracy of oral liquid measuring devices: comparison of dosing cup and oral dosing syringe.Ann Pharmacother. 2008 Jan;42(1):46-52. Epub 2007 Dec 4. PMID: 18056832	Philippe Rocca-Serra						device	transfer function				
OBI:0000436	needle	needle	metadata complete		A needle is a sharp, hollow device used to penetrate tissue or soft material. When attached to a syringe. it allows delivery of a specific volume of liquid or gaseous mixture.	OBI Instrument	Ovarian carcinoma presenting with axillary lymph node metastasis: A case diagnosed by fine-needle aspiration and brief review of the literature.  Diagn Cytopathol. 2008 Oct 16. PMID: 18925569	Philippe Rocca-Serra						device	transfer function				
OBI:0000448	packed column	packed column	metadata complete		A packed column is a chromatography column where the particles of the solid stationary phase or the support coated with a liquid stationary phase may fill the whole inside volume of the tube.	WEB:<http:www.iupac.org/publications/pac/1993/pdf/6504x0819.pdf>|http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01218		PERSON:Daniel Schober						chromatography column					
OBI:0000463	column chromatography detector	column chromatography detector	metadata complete		There is a wide range of detectors available for both GC and LC each having their own particular areas of application. In general the more catholic the response, the less sensitive the detector and the most sensitive detectors are those that have a specific response. The performance of all detectors should be properly specified so that the user can determine which is most suitable for a specific application. Such specifications are also essential to compare the performance of different detectors supplied by alternative instrument manufactures. Detector specifications should be presented in a standard form and in standard units, so that detectors can be compared that function on widely different principles.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01077|WEB:<http://www.chromatography-online.org/Principles/Basic-Chromatograph/Detector/rs56.html>		PERSON:Daniel Schober		chromatography detector, defined class/xps				device	measure function				
OBI:0000464	Bruker autosampler	Bruker autosampler	metadata complete		A Bruker autosampler is an autosampler made by Bruker.	http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400209|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober						autosampler					
OBI:0000465	organic acid column	organic acid column	metadata complete		An organic acid column is a chromatography column which enables (reversed-phase) separation of hydrophilic aliphatic and aromatic organic acids with UV detection. Organic acid columns allow retention of polar and apolar organic acids and are hydrolysis resistant.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01099|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober						chromatography column					
OBI:0000466	thermal conductivity detector	thermal conductivity detector	metadata complete	TCD, hot wire detector	The most commonly used detector in preparative GC is the thermal conductivity detector (hot wire detector). Even this detector, however, is often too sensitive and has too high a flow impedance. Under such circumstances, the procedure mentioned above must be employed. The eluent from the preparative column is split and a small portion diverted through the detector (sometimes with further dilution with carrier gas to reduce sensitivity).	WEB:<http://www.chromatography-online.org/Preparative/Apparatus/Detectors/rs27.html>|http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01084		PERSON:Daniel Schober						gas chromatography detector					
OBI:0000467	Bruker US 2 NMR magnet	Bruker US 2 NMR magnet	metadata complete		An actively-shielded superconducting magnet from Bruker that combines Bruker BioSpin's advanced, proprietary UltraShield active shielding and UltraStabilized sub-cooling technologies. This shielded and stabilized (US2) magnet system delivers high sensitivity and spectral dispersion.	http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400189|WEB:<http://www.bruker-biospin.com/nmr_magnets_950us2.html>		PERSON:Daniel Schober		NMR instrument				Bruker NMR magnet					
OBI:0000468	protein column	protein column	metadata complete		A protein column is a chromatography column used for the separation of complex protein mixtures. Protein columns enable sample desalting, followed by chromatographic separation or fractionation of complex protein samples, e.g. immunodepleted serum or plasma proteins.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01238|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober		refactor as defined class				chromatography column					
OBI:0000469	solvent mixer	solvent mixer	metadata complete		A liquid chromatography device that mixes different solvents, e.g. under high pressure and in differrent volumes ranging from 5 ml to 5 L capacity. Powerful magnetic mixers provide vigorous agitation required for high pressure reaction chemistry.	GROUP:<http://msi-ontology.sourceforge.net>|http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01072		PERSON:Daniel Schober						chromatography instrument					
OBI:0000473	Bruker NMR Case sample changer	Bruker NMR Case sample changer	metadata complete		The NMR Case is an economical NMR sample changer for laboratories with modest automation needs. It expands the maximum number of samples your spectrometer can process during unattended operation to 24. The NMR Case consists of multiple components. The NMR Case exchange module installed atop your cryostat. The two front legs are adjustable, making the NMR Case compatible with many different cryostats.	WEB:<http://www.bruker-biospin.com/automation.html>|http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400203		PERSON:Daniel Schober		NMR instrument				Bruker autosampler					
OBI:0000474	nano pump system	nano pump system	metadata complete		A pump system optimized for nano flow chromatography.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01052|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober						chromatography pump system					
OBI:0000475	Bruker AutoClean system	Bruker AutoClean system	metadata complete		NMR tubes are often used once and discarded, creating needless waste. With the Bruker BioSpin Autoclean system you can now recycle 5mm, 3mm, or 5mm/3mm step-down (Wilmad 520-1B) NMR tubes. AutoClean NMR Tube Washing System is a simple way to recoup the substantial investment your organization makes in quality NMR tubes, and cut back on needless waste material.	WEB:<http://www.used-line.com/c5983250s10028-Bruker_Biospin_NMR_Autoclean_Nuclear_Magnetic_Resonance_Organic_Solvents.htm>|http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400205		PERSON:Daniel Schober	washing system/NMR tube washing system, XPS: device has function washing					NMR tube washing system					
OBI:0000476	manual injection system	manual injection system	metadata complete		The traditional hardware system that allows a human to inject a sample into an inlet by hand, using a syringe.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01064|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober						sample injection system					
OBI:0000477	Varian GEMINI spectrometer	Varian GEMINI spectrometer	metadata complete		An older Varian Broadband NMR spectrometer.	GROUP:<http://msi-ontology.sourceforge.net>|http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400239		PERSON:Daniel Schober		NMR instrument				Varian NMR instrument					
OBI:0000478	column connector	column connector	metadata complete		A device that connects two or more columns together in a functional way with leak-tight connection, low dead volume, low thermal mass and high inertness.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01236|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober		chromatography device				chromatography device					
OBI:0000479	solid NMR probe	solid NMR probe	metadata complete		An NMR probe that is designed to hold a solid sample.	http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400243|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober		NMR device				NMR probe					
OBI:0000480	Bruker high resolution probe	Bruker high resolution probe	metadata complete	HR Probe	BRUKER BIOSPIN's experienced Research & Development group not only delivers top-performance probes for the more common experiments, but also a wealth of special probes for almost any application. For high resolution (HR) NMR we offer probes with a variety of important characteristics and features.	http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400223|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober		NMR probe				Bruker NMR probe					
OBI:0000481	chromatography detector	chromatography detector	metadata complete		A chromatography detector is a device that locates in the dimensions of space and time, the positions of the components of a mixture that has been subjected to a chromatographic process and thus permits the senses to appreciate the nature of the separation.  Defining characteristics are Dynamic Range, Response Index or Linearity, Linear Dynamic range, Detector Response,  Detector Noise Level, Detector Sensitivity or Minimum Detectable Concentration, Total System Dispersion, Sensor Dimensions, Detector Time Constant, Pressure Sensitivity, Flow Sensitivity, Operating Temperature Range.	WEB:<http://www.chromatography-online.org/GC-Detectors/Classification/rs1.html>|http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01012		PERSON:Daniel Schober						chromatography instrument					
OBI:0000482	normal phase column	normal phase column	metadata complete		A normal phase column is a chromatography column in which the stationary phase is more polar than the mobile phase. Its counterpart is the reversed phase column.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01097|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober						chromatography column					
OBI:0000483	APOLLO console	APOLLO console	metadata complete		The APOLLO is a compact, modular, multiple-DSP, Windows XP Professional-based console that can be equipped with up to 8 DDS-based RF transmitter channels configurable from 2 kHz to 3.5 GHz. Each transmitter channel produces a nominal 1V output and has the most agile frequency, phase and amplitude control of any system on the market. An array of additional options are available including multiple RF transmitters, linear high-power RF amplifiers, digital receiver arrays, low noise figure preamplifiers, a gradient control system, shim unit, MAS spin-speed controller, variable temperature unit, digital lock system and probe/coil interface. With its numerous options, the Apollo can be configured for any NMR, NQR or MRI application.	WEB:<http://www.tecmag.com/apollo.htm>|http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400249		PERSON:Daniel Schober		NMR instrument/NMR console				tecmag NMR console					
OBI:0000484	NMR sample holder	NMR sample holder	metadata complete		An NMR sample holder is the part of an NMR instrument, which carries the NMR probe,sample tube and the nmr sample.	http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400212|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober		NMR device				device					
OBI:0000485	chromatography instrument	chromatography instrument	metadata complete		Any instrument that is used to carry out a chromatography experiment.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01262|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober		chromatography device, defined class?				device	material separation function				
OBI:0000486	continuous wave NMR instrument	continuous wave NMR instrument	metadata complete		Continuous wave NMR spectrometers are similar to optical spectrometers, but the sample is held in a strong magnetic field, where the frequency of the source is slowly scanned (in some instruments, the source frequency is held constant, and the field is scanned).	http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400283|WEB:<http://teaching.shu.ac.uk/hwb/chemistry/tutorials/molspec/nmr3.htm>		PERSON:Daniel Schober		NMR instrument				NMR instrument					
OBI:0000487	fourier transformation NMR instrument	fourier transformation NMR instrument	metadata complete		In fourier transformation NMR, all frequencies in a spectrum are irradiated simultaneously with a radio frequency pulse. Following the pulse, the nuclei return to thermal equilibrium. A time domain emission signal is recorded by the instrument as the nuclei relax. A frequency domain spectrum is obtained by Fourier transformation.	http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400284|GROUP:<http://teaching.shu.ac.uk/hwb/chemistry/tutorials/molspec/nmr3.htm>		PERSON:Daniel Schober		NMR instrument				NMR instrument					
OBI:0000489	nitrogen phosphorous detector	nitrogen phosphorous detector	metadata complete		The nitrogen phosphorus detector (NPD) (sometimes called the thermionic detector) is a very sensitive, specific detector the design of which, is based on the FID. Physically the sensor appears to be very similar to the FID but, in fact, operates on an entirely different principle. The nitrogen phosphorous detector (sometimes called the thermionic detector) is a very sensitive but specific detector that responds almost exclusively to nitrogen and phosphorous compounds. It is based on the flame ionization detector but differs in that it contains a rubidium or cesium silicate (glass) bead situated in a heater coil, a little distance from the hydrogen flame. If the detector is to respond to both nitrogen and phosphorous then the hydrogen flow should be minimal so that the gas does not ignite at the jet. If the detector is to respond to phosphorous only, a large flow of hydrogen is used which is burnt at the jet. The heated bead emits electrons by thermionic emission. These electrons are collected under a potential of a few volts by an appropriately placed anode, and provides a background current. When a solute containing nitrogen or phosphorous is eluted from the column, the partially combusted nitrogen and phosphorous materials are adsorbed on the surface of the bead. The adsorbed material reduces the work function of the surface and, as consequence, the emission of electrons is increased which raises the current collected at the electrode. The sensitivity of the detector to phosphorous is about 10-12 gram per ml and for nitrogen about 10-11 gram per ml at a signal to nose ratio of 2. The alkali bead as a finite life and needs regular replacement.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01089|WEB:<http://www.chromatography-online.org/topics/nitrogen/phosphorus/detector.html>		PERSON:Daniel Schober						gas chromatography detector					
OBI:0000490	cation exchange column	cation exchange column	metadata complete		A cation exchange column is a chromatography column that is used in cation exchange chromatography.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01096|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober						ion exchange column					
OBI:0000491	direct detection NMR probe	direct detection NMR probe	metadata complete		An NMR probe designed to allow the direct detection of acquisition nuclei.	http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400280|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober		NMR device				NMR probe					
OBI:0000492	Bruker B-ACS system	Bruker B-ACS system	metadata complete		The Bruker Automatic Sample Changer (B-ACS 60/120), used in conjunction with Bruker DISNMR, UXNMR or XWIN-NMR software, provides dialog-guided facilities which allow the user to easily and effectively perform automatic (continuous) experiments. Features include a 60 or 120 sample capacity, random accessing of samples, positive sample identification with the optional bar code reader, and temperature control of individual samples with the optional sample heater unit.	http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400210|WEB:<http://www.bruker-biospin.com/automation.html>		PERSON:Daniel Schober		NMR instrument				Bruker autosampler					
OBI:0000493	rapid resolution column	rapid resolution column	metadata complete		A rapid resolution column is a chromatography column as marketed by Agilent, which is used with a rapid resolution cartridge to ensure a fast chromatography process with good separation resolution.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01102|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober						device	material separation function				
OBI:0000494	liquid chromatography autosampler	liquid chromatography autosampler	metadata complete		Designed to perform capillary LC with injection of sample volumes ranging from nL to L.	GROUP:<http://msi-ontology.sourceforge.net>|http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01061		PERSON:Daniel Schober						chromatography instrument					
OBI:0000495	vacuum degasser	vacuum degasser	metadata complete		A degassing system used for degassing solvents in liquid chromatography. Dissolved gasses, usually nitrogen and oxygen from the air, tend to be evolved in the mobile phase as the pressure is reduced when the mobile phase leaves the liquid chromatography column and enters the detector. Gasses in the mobile phase in the detector can produce completely unacceptable noise and, thus, must be removed. The dissolved gasses were originally removed under vacuum but, unfortunately, are soon replaced if the solvent is left in contact with air at atmospheric pressure. For this reason degassing is now usually carried out by bubbling helium through the mobile phase reservoirs. Secondly, vacuum is used in the thermionic detector. This consists of a device, very similar in design to the thermionic valve which is attached to a vacuum and a small quantity of the eluent from a gas chromatography column allowed to bleed through it. Helium is used as the carrier gas. The presence of solute vapor causes the thermionic current to fall. This type of detector tends to become contaminated rather readily.	WEB:<http://www.chromatography-online.org/topics/vacuum.html>|http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01053		PERSON:Daniel Schober						chromatography pump system					
OBI:0000496	capillary column	capillary column	metadata complete		A capillary column is a thin tube with a small inner diameter, usually around 0.5 mm.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01066|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober						chromatography column					
OBI:0000497	sample inlet	sample inlet	metadata complete		The column inlet (or injector) provides the means to introduce a sample into a continuous flow of carrier gas. The inlet is a piece of hardware attached to the column head.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01044|WEB:<http://en.wikipedia.org/wiki/Gas_chromatography#Inlets>		PERSON:Daniel Schober		chromatography device				chromatography device					
OBI:0000498	NMR tube washing system	NMR tube washing system	metadata complete		An automatic cleaning system for NMR tubes that removes previous probe and sample residues in order to allow for tube recycling.	http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400204|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober		NMR instrument				device					
OBI:0000499	NMR console	NMR console	pending final vetting		A component of an NMR instrument that controls the activities of the other components.	http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400015|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober		NMR instrument, TODO: same as or part of acquisition computer?				device					
OBI:0000500	dual loop autosampler	dual loop autosampler	metadata complete		A dual loop autosampler is an autosampler that is designed for handling both analytical (10 mL/min flow rate) to preparative scale sample purification (100 mL/min flow rate).	WEB:<http://www.chem.agilent.com/scripts/pds.asp?lpage=17149>|http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01063		PERSON:Daniel Schober						liquid chromatography autosampler					
OBI:0000501	variable wavelength detector	variable wavelength detector	metadata complete		A chromatography detector, that can detect signals within a certain range at user-defined wavelengths.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01079|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober						device	measure function				
OBI:0000503	Bruker LC-NMR platform	Bruker LC-NMR platform	metadata complete		The LC-NMR/MS setup was first introduced by Bruker BioSpin in 1999. An LC-NMR system including a Bruker Peak Sampling Unit (BPSU-36) was coupled with a Bruker Daltonics esquire series ion trap mass spectrometer via a Bruker NMR-MS interface (BNMI). Since October 2004 the Bruker Daltonics microTOF-LC time-of-flight mass spectrometer can also be integrated in an LC-NMR setup.	http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400276|WEB:<http://www.bruker-biospin.com/hyphenation_lcnmr_ms.html>		PERSON:Daniel Schober		NMR instrument|hyphenated NMR instrument platform				Bruker NMR instrument					
OBI:0000504	sample injection system	sample injection system	metadata complete		An automated chromatography system that injects the sample into the chromatography columns in order to increase speed and minimize human involvement in the purification process for  better reproducibility.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01057|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober		chromatography device				chromatography device					
OBI:0000505	multiple wavelength detector	multiple wavelength detector	metadata complete		A chromatography detector, that can detect many discrete wavelengths in parallel and produces a multiple wavelength chromatographic profile.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01078|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober						device	measure function				
OBI:0000506	photoionization detector	photoionization detector	metadata complete	PID	The selective determination of aromatic hydrocarbons or organo-heteroatom species is the job of the photoionization detector (PID). This device uses ultraviolet light as a means of ionizing an analyte exiting from a GC column. The ions produced by this process are collected by electrodes. The current generated is therefore a measure of the analyte concentration. f the amount of ionization is reproducible for a given compound, pressure, and light source then the current collected at the PID's reaction cell electrodes is reproducibly proportional to the amount of that compound entering the cell. The reason why the compounds that are routinely analyzed are either aromatic hydrocarbons or heteroatom containing compounds (like organosulfur or organophosphorus species) is because these species have ionization potentials (IP) that are within reach of commercially available UV lamps. The available lamp energies range from 8.3 to 11.7 ev, that is, lambda max ranging from 150 nm to 106 nm. Although most PIDs have only one lamp, lamps in the PID are exchanged depending on the compound selectivity required in the analysis.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01090|WEB:<http://www.chemistry.adelaide.edu.au/external/soc-rel/content/pid.htm>		PERSON:Daniel Schober						gas chromatography detector					
OBI:0000507	gas generator	gas generator	metadata complete		An instrument that generates gases for use with the gas chromatograph. Previously gas was obtained from gas tanks or gas cylinders. However, over the past decade the use of gas generators have become more popular as it avoids having gases at high pressure in the laboratory which is perceived by some as potentially dangerous. In addition, the use of a hydrogen generator avoids the use of a cylinder of hydrogen at high pressure which is also perceived by some as a serious fire hazard despite the fact that they have been used in laboratories, quite safely for nearly a century.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01033|WEB:<http://www.chromatography-online.org/GC/Gas-Supplies/Pure-Air-Generators./rs5.html>		PERSON:Daniel Schober		gas chromatography equipment				gas chromatography equipment					
OBI:0000508	column jacket	column jacket	metadata complete		A column jacket is a piece of column chromatography equipment that covers a column in order to ensure thermoisolation and create a controllable thermostatic microenvironment.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01276|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober		chromatography device				chromatography device					
OBI:0000509	electron capture detector	electron capture detector	metadata complete	ECD	The electron capture detector is a GC detector that uses a radioactive Beta emitter (electrons) to ionize some of the carrier gas and produce a current between a biased pair of electrodes. When organic molecules that contain electronegative functional groups, such as halogens, phosphorous, and nitro groups pass by the detector, they capture some of the electrons and reduce the current measured between the electrodes.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01085|WEB:<http://homepages.onsnet.nu/%7Ealkema/html/whatisgc.html>		PERSON:Daniel Schober						gas chromatography detector					
OBI:0000510	reversed phase column	reversed phase column	metadata complete		A reversed phase column is a chromatography column in which the mobile phase is more polar than the stationary phase. Its counterpart is the normal phase column.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01106|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober						chromatography column					
OBI:0000511	injector lubricant	injector lubricant	metadata complete		A lubricant used in liquid chromatography that eases sample injector penetration.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01118|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober						chromatography consumable					
OBI:0000513	DISCOVERY console	DISCOVERY console	metadata complete		The Discovery console is a Windows XP Professional-based, integrated console designed especially for Solid-State NMR. The console includes everything needed to interface to any magnet and solids probe - from computer to cables to duplexing network.	http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400247|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober		NMR instrument/NMR console				tecmag NMR console					
OBI:0000514	Bruker AMX series NMR instrument	Bruker AMX series NMR instrument	metadata complete		A series of older Bruker NMR magnets, now out of production. The Bruker AMX500 has proven an extremely reliable workhorse, with excellent lineshape yielding superior water suppression even without gradients. The Oxford 11.7 Tesla 5.2 cm bore magnet rests on a TMC vibration damping table. Homogeneity is controlled by a BSN-18 and BSN-2 with 19 shim controls. In addition to the 5 mm triple resonance probe, the AMX is equipped with a 10mm broadband observe probe.	WEB:<http://www.tufts.edu/med/biochemistry/NMR/amx500.html>|http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400240		PERSON:Daniel Schober		NMR instrument				Bruker NMR instrument					
OBI:0000515	chromatofocusing column	chromatofocusing column	metadata complete		A chromatofocusing column is a chromatography column in which a resin is equilibrated at one pH and eluted at a second pH. The use of a weak ion-exchange resin causes a pH gradient to be formed at the solvent front owing to the buffering action of the resin. This pH gradient in turn leads to an ordering of proteins by isoelectric point. Molecules of charge sign opposite the resin bind; those of charge sign like the resin do not bind.	WEB:<http://www.bioprocessintl.com/default.asp?page=glossary&TopicID=1>|http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01209		PERSON:Daniel Schober						chromatography column					
OBI:0000516	NMR probe	NMR probe	metadata complete		Part of an NMR instrument that detects the signals emitted from a sample. No single probe can perform the full range of experiments, and probes that are designed to perform more than one type of measurement usually suffer from performance compromises. The probe represents a rather fragile single point of failure that can render an NMR system completely unusable if the probe is dropped or otherwise damaged. Probes are usually characterised by Sample diameter and Frequency.\n  alt The instrument that transmits and receives radiofrequency to and from the NMR sample.	http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400014|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober		NMR instrument				device	measure function		NMR instrument		
OBI:0000517	NMR magnet	NMR magnet	metadata complete		A magnet which induces a certain frequency (MHz) and which has a certain bore diameter.\n  alt The NMR signal is a natural physical property of the certain atomic nuclei but it can only be detected with an external magnetic field. A magnet is a fundamental part of an NMR instrument which induces an electromagnetic force field (RF pulse) and by this excites and aligns the spins of the electrons of the NMR acquisition nucleus. It is usually a big (superconducting) electromagnet which is cooled by liquid helium and can be adjusted to a frequency between 200 and 950 MHz. The magnetic field strength is measured in Tesla or Gauss.	http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400185|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober		NMR instrument				device					
OBI:0000518	trap column	trap column	metadata complete		A trap column is a chromatography column which is used prior to a, e.g. mass spectrometry, separation to clean up or concentrate controlled amounts of samples prior to elution to a detector.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01261|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober						chromatography column					
OBI:0000519	flow probe	flow probe	metadata complete		An NMR probe that allows the automatized flow-through of a sample. The sample is aspirated via a syringe pump into the Flow probe, the NMR spectrum is acquired and when the experiment is complete, the sample is returned to back to an external source (well plate) or flushed to waste. Sometimes pulsed field gradients (PFG) can be established in flow probes.	WEB:<http://www.varianinc.com/cgi-bin/nav?products/NMR/accessory/auto_samplers/vast/index&cid=HFIH>|http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400131		PERSON:Daniel Schober		NMR device				NMR probe					
OBI:0000521	flame ionization detector	flame ionization detector	metadata complete	FID	A flame ionization detector is a GC detector that consist of a hydrogen/air flame and a collector plate which are normally heated independently of the chromatographic oven. Heating is necessary in order to prevent condensation of water generated by the flame and also to prevent any hold-up of solutes as they pass from the column to the flame. There is an electrode above the flame to collect the ions formed at a hydrogen/air flame. The number of ions hitting the collector is measured and a signal is generated. Flame ionization detectors are most widely used and generally applicable for gas chromatography and hence is used for routine and general purpose analysis. It is easy to use but destructive of the sample.	WEB:<http://homepages.onsnet.nu/%7Ealkema/html/whatisgc.html>|http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01197		PERSON:Daniel Schober						gas chromatography detector					
OBI:0000522	vial	vial	metadata complete		A container made from solid material and primarily used for holding liquid.	https://en.wikipedia.org/wiki/Vial		https://orcid.org/0000-0002-8844-9165						container					
OBI:0000523	magic angle spinning rotor	magic angle spinning rotor	metadata complete	MAS rotor	A rotor device that holds the NMR sample and enables the adjustment of the orientation of the rotation axis for a sample in a NMR instrument in the magic angle.	WEB:<http://www.freepatentsonline.com/4352066.html>|http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400130		PERSON:Daniel Schober		NMR instrument				device			NMR instrument		
OBI:0000524	Varian VXR spectrometer	Varian VXR spectrometer	metadata complete		A Varian NMR spectrometer.	WEB:<http://www.scs.uiuc.edu/NMR/instruments/vxr500.php>|http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400238		PERSON:Daniel Schober		NMR instrument				Varian NMR instrument					
OBI:0000525	splitless GC injector	splitless GC injector	metadata complete		Injected sample enters column immediately (while split valve to split vent is closed). Here a sample is introduced into a heated small chamber via a syringe through a septum - the heat facilitates volatilization of the sample and sample matrix. The carrier gas then either sweeps the entirety (splitless mode) or a portion (split mode) of the sample into the column. In split mode, a part of the sample/carrier gas mixture in the injection chamber is exhausted through the split vent.	WEB:<http://en.wikipedia.org/wiki/Gas_chromatography>|http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01060		PERSON:Daniel Schober						sample injection system					
OBI:0000526	preparative autosampler	preparative autosampler	metadata complete		For preparative LC with injection of sample volumes ranging from L to mL ranges.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01062|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober						liquid chromatography autosampler					
OBI:0000527	flow high resolution probe	flow high resolution probe	metadata complete	flow HR-probe	Hyphenated analytical techniques combining mass spectrometry and chromatography are well-established laboratory tools. The combination of chromatography and NMR has also made its way into the analytical laboratory. Further developments even combine all three techniques into an LC-NMR/NMR-MS system. The use of solid phase extraction provides an efficient interface between chromatography and NMR with demands for special type of flow probes.	http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400195|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober		NMR probe				Bruker high resolution probe					
OBI:0000528	liquid chromatography valve	liquid chromatography valve	metadata complete		A sample valve that must be able to sustain pressures up to 10,000 p.s.i., although it is most likely to operate on a continuous basis, at pressures of 3,000 p.s.i. or less. The higher the operating pressure the tighter the valve seating surfaces must be forced together to eliminate any leak. It follows that any abrasive material, however fine, that passes into the valve can cause the valve seating to become scored each time it is rotated which will ultimately lead to leaks. This will cause the sample size to vary between samples and eventually affect the accuracy of the analysis. It follows that any solid material must be carefully removed from any sample before filling the valve. The sample volume of an internal loop valve is situated in the connecting slot of the valve rotor and can be used only for relatively small sample volumes. Internal sample loop valves provide samples with volumes ranging from 0.1 ml to about 0.5 ml. Valve operation is shown in figure 6. The left-hand side diagram shows the load position. The sample occupies the rotor slot and has been filled by passing the sample from an appropriate syringe through the rotor slot to waste. While loading the sample, the mobile phase supply is passed through the valve directly to the column. To place the sample onto the column, the valve is then rotated and the valve slot containing the sample is now placed between the solvent supply and the column. As a result, the sample is passed into the column by the flow of solvent.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01110|WEB:<http://www.chromatography-online.org/EC-Dispersion/HPLC-Sample-Valves/rs16.html>		PERSON:Daniel Schober		chromatography device				chromatography device					
OBI:0000529	JEOL NMR probe	JEOL NMR probe	metadata complete		An NMR probe that is manufactured by JEOL.	http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400232|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober		NMR device				NMR probe					
OBI:0000530	Bruker UltraShield Plus NMR magnet	Bruker UltraShield Plus NMR magnet	metadata complete		An NMR magnet of which Brukers claims it is the latest and most advanced self-shielding NMR magnet technology ever developed. These magnets are the ultimate advancement in high performance, actively-shielded NMR solutions. They offer unprecedented shielding performance whilst ensuring no compromise in system homogeneity, stability or cryogenic specifications.	WEB:<http://www.bruker-biospin.com/nmr_magnets_usplus.html>|http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400190		PERSON:Daniel Schober		NMR instrument				Bruker NMR magnet					
OBI:0000531	Bruker CryoProbe	Bruker CryoProbe	metadata complete		The Bruker BioSpin CryoProbe is a high-performance cryogenically cooled probe developed for high-resolution applications. It has improved signal/noise (S/N) ratios obtained by reducing the operating temperature of the coil and the pre-amplifier. As a result, the efficiency of the coil is improved and the noise of the coil and the pre-amplifier are reduced.The dramatic increase in the S/N ratio by a factor of 3-4, as compared to conventional probes, leads to a possible reduction in experiment time of up to 16 or a reduction in required sample concentration by a factor of up to 4. The CryoProbes possess key characteristics for NMR analysis:\n   Significant S/N gains (with moderately salty samples also)\n   Short pulse widths\n   Short ring down times\n   Linear behavior in power response\n   Gradient capability\n   CryoProbes are available as Triple Resonance, Dual, Selective X Detection, MicroImaging, and Quad Nucleus Probes configurations at 400 MHz and higher\n   All high resolution probes have a lock circuit\n   All high resolution probes have Z-gradient.	http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400191|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober		NMR probe				Bruker NMR probe					
OBI:0000532	column cartridge	column cartridge	metadata complete		A device that binds the chromatography column and additional connector elements and / or valves or syringes into one physical unity for further processing.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01055|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober						chromatography device					
OBI:0000533	affinity column	affinity column	metadata complete		An affinity column is a chromatography column that is used in affinity chromatography. Differences in the affinity of molecules to be separated to a stationary phase are used for discriminate retention.	GROUP:<http://msi-ontology.sourceforge.net>|http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01094		PERSON:Daniel Schober						chromatography column					
OBI:0000534	tecmag NMR instrument	tecmag NMR instrument	metadata complete		An NMR instrument that is manufactured by tecmag.	http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400250|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober		NMR instrument				NMR instrument					
OBI:0000535	gel filtration column	gel filtration column	metadata complete		A Gel filtration column is a chromatography column for size-exclusion chromatography, in which the stationary phase is a gel. The main application of gel filtration chromatography is the fractionation of proteins and other water-soluble polymers.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01104|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober						size exclusion column					
OBI:0000536	fraction collector	fraction collector	metadata complete		A fraction detector is a device that allows regular or specified samples to be taken from a column eluate and stored in a retrievable form. The storage vessels are usually small sample tubes or vials that are oriented in a rotating disk or in a moving belt, there movement usually being controlled by a microprocessor. On receiving a signal from the microprocessor, the next vial is placed under the column outlet and the eluate collected until receiving another signal from the computer. Once the properties of the chromatogram that describes the separation has been ascertained, then the collection program can be defined. The fractions can be collected on a basis of time either at regular intervals or a specific times to collect specific peaks. Alternatively the fractions can be collected by monitoring the detector output and when a peak starts to elute the fraction collector is activated and the peak collected in a specific vial. When the peak returns to base line the column eluate is then directed to waste until the next peak starts eluting. Fraction collectors are in common use with most liquid chromatographs. They are used to collect samples for further purification, subsequent examination by spectroscopic techniques or for biological or organoleptic testing.	WEB:<http://www.chromatography-online.org/topics/fraction/collector.html>|http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01073		PERSON:Daniel Schober						chromatography instrument					
OBI:0000538	in-line filter	in-line filter	metadata complete		A solvent filter that sits between the pump and the injection valve that prevents dust particles, general debris and, to some extent, bacteria from entering the chromatography system. Contaminants can interfere with the low-pressure gradient former or the pump and particles entering valves may interfere with the proper function. The result could cause an increased baseline noise, non-repeatable gradient forming, unreliable flow rate or other interferences. Solvent in-line filters are low-pressure filters and will allow a high flow rate due to a large surface area and large porosity.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01123|WEB:<http://www.appliedporous.com/frits-chromatography.htm>		PERSON:Daniel Schober						chromatography detector filter					
OBI:0000539	imaging NMR probe	imaging NMR probe	metadata complete		An NMR probe that is designed for generating pictures from sample states via NMR imaging.	http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400244|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober		NMR device				NMR probe					
OBI:0000541	Bruker AC series NMR instrument	Bruker AC series NMR instrument	metadata complete		A series of older Bruker NMR magnets, now out of production.	http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400241|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober		NMR instrument				Bruker NMR instrument					
OBI:0000542	gas chromatography equipment	gas chromatography equipment	metadata complete		Any device used in a gas chromatography experiment.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01030|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober		will become defined class/xps				chromatography device					
OBI:0000543	syringe filter	syringe filter	metadata complete		A small membrane filter of defined pore size, that filters samples from a syringe.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01122|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober						chromatography detector filter					
OBI:0000544	Bruker SampleRail system	Bruker SampleRail system	metadata complete		This Instrument system automatically prepares an NMR sample, inserts it into an NMR magnet, performs NMR experiments on the sample, and transports it back to the preparation system.   The SampleRail fulfills the transporting tasks from the preparation system into the NMR magnet and back.	WEB:<http://www.bruker-biospin.com/automation.html>|http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400207		PERSON:Daniel Schober		NMR instrument				device	transfer function				
OBI:0000545	column compartment	column compartment	metadata complete		For chromatography analyses, the ability to maintain a stable column environment regardless of ambient temperature fluctuations is critical for maintaining retention time precision. In order to ensure such stable conditions at different chromatography steps a column compartment can be installed that ensures e.g. stable temperature of the column in a given step.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01068|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober						chromatography device					
OBI:0000546	capillary pump system	capillary pump system	metadata complete		A pump system optimized for capillary chromatography.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01051|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober						chromatography pump system					
OBI:0000547	evaporative light scattering detector	evaporative light scattering detector	metadata complete		The evaporative light scattering detector, as its name implies, utilizes a spray that continuously atomizes the column eluent into small droplets. These droplets are allowed to evaporate, leaving the solutes as fine particulate matter suspended in the atomizing gas.	WEB:<http://www.chromatography-online.org/HPLC-Detectors/Evaporative-Light-Scattering/rs73.html>|http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01082		PERSON:Daniel Schober						device	measure function				
OBI:0000549	column cartridger	column cartridger	metadata complete		A chromatography device where the column cartridge is inserted into and stabilised.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01054|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober						chromatography instrument					
OBI:0000550	nitrogen generator	nitrogen generator	metadata complete		A gas generator that generates nitrogen gas.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01034|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober						gas generator					
OBI:0000551	needle assembly	needle assembly	metadata complete		The needle assembly attached to the autosampler, comprises the injector needle that feeds a sample or carrier gas into the inlet	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01065|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober						chromatography device					
OBI:0000553	Bruker Capillary LC-NMR platform	Bruker Capillary LC-NMR platform	metadata complete		Capillary LC-NMR is a hyphenated technique coupling capillary liquid chromatography and NMR, which increases sensitivity dramatically through the use of miniaturization of the chromatographic techniques and NMR detection volume. LC-NMR hyphenated systems separate a mixture into its pure components and couple the output to NMR for automatic sample analysis. The ever increasing need to measure lower sample amounts and lower level impurities demands the highest NMR sensitivity. Traditional LC-NMR systems with relatively large peak volumes are not optimized for such low levels of detection. Bruker BioSpin, together with Waters and Protasis has developed a Capillary LC-NMR system. The latest capillary LC attributes and highest capillary flow probe sensitivity combine with state of the art NMR systems technology. Greater mass sensitivity and faster spectral analysis with smaller sample volumes is possible. This system is ideal for analysis of metabolites and impurities associated with the drug development process.	http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400279|WEB:<http://www.bruker-biospin.com/hyphenation_caplcnmr.html>		PERSON:Daniel Schober		NMR instrument|hyphenated NMR instrument platform				Bruker NMR instrument					
OBI:0000554	gas chromatography oven	gas chromatography oven	metadata complete		A gas chromatography oven is an oven with a heated connection between the GC and the MS instrument in a GCMS-analysis, that keeps compounds in the gas phase as they leave the GC oven.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01039|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober		gas chromatography equipment				gas chromatography equipment					
OBI:0000555	autosampler	autosampler	metadata complete		An optional part of an NMR instrument used to hold samples prior to NMR analysis and that sequentially loads these samples into the analytical part of the NMR instrument. \n   alt The autosampler is an automatic sample changer device.	http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400002|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober		NMR instrument				device					
OBI:0000556	isocratic pump system	isocratic pump system	metadata complete		A pump system optimized for isocratic chromatography.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01049|WEB:<http://www.buchi.com/Isocratic-Pump-System.253.0.html>		PERSON:Daniel Schober						chromatography pump system					
OBI:0000557	flash pump system	flash pump system	metadata complete		Any pump system used in flash column chromatography to push the solvent through the column. Better flow rates can be achieved by using a pump or by using compressed gas (e.g. air, nitrogen, or argon) to push the solvent through the column (flash column chromatography).	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01048|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober						chromatography pump system					
OBI:0000558	Varian UNITY INOVA spectrometer	Varian UNITY INOVA spectrometer	metadata complete		The UNITY INOVA is also the easiest spectrometer to use and is also the choice of those interested in using advanced NMR techniques in their own research, but without becoming, or hiring, an NMR expert. A complete set of turnkey operating environments is available for the UNITY INOVA covering the structure and dynamics of biological macromolecules, small molecules, solids, and imaging. These packages put the combined NMR expertise of the entire Varian NMR community at your fingertips.	WEB:<http://www.varianinc.com/cgi-bin/nav?products/NMR/spectromet/inova/index&cid=HFIH>|http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400236		PERSON:Daniel Schober		NMR instrument				Varian NMR instrument					
OBI:0000559	liquid NMR probe	liquid NMR probe	metadata complete		An NMR probe that is designed to hold a liquid sample.	http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400242|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober		NMR device				NMR probe					
OBI:0000560	ion exchange column	ion exchange column	metadata complete		An ion exchange column is a chromatography column that is used in ion exchange chromatography and anion or cation exchange resins to enable separation.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01105|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober						chromatography column					
OBI:0000561	Bruker NMR probe	Bruker NMR probe	metadata complete		An NMR probe that is manufactured by Bruker.	http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400231|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober		NMR device, TODO: May need no definition.				NMR probe					
OBI:0000562	anion trap column	anion trap column	metadata complete		An anion trap column is a trap column and ion-exchange column which contains cationic anion-exchange resins.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01277|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober						trap column					
OBI:0000563	fluorescene detector	fluorescene detector	metadata complete		A single wavelength detector, where the excitation light wavelength is normally a mercury lamp generated high intensity UV light at 253.7 nm. Many substances that fluoresce will be excited by light of this wavelength and hence be detected.	WEB:<http://www.chromatography-online.org/HPLC-Detectors/Fluorescence/Single-Wavelength-Excitation/rs57.html>|http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01080		PERSON:Daniel Schober						device	measure function				
OBI:0000564	tecmag EAGLE probe	tecmag EAGLE probe	metadata complete		The Eagle is a 4 mm 1H/X solid-state MAS probe with a top spinning speed of 18 kHz. Its simple design is robust, reliable and easy to spin. Configurations are available for 200 to 600 MHz wide bore magnets on Tecmag, Bruker, Chemagnetics, JEOL and Varian spectrometers.	http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400248|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober		NMR probe				solid NMR probe					
OBI:0000565	electrical conductivity detector	electrical conductivity detector	metadata complete		The electrical conductivity detector measures the conductivity of the mobile phase. There is usually background conductivity which must be backed-off by suitable electronic adjustments. If the mobile phase contains buffers, the detector gives a base signal that completely overwhelms that from any solute usually making detection impossible. Thus, the electrical conductivity detector a bulk property detector. and senses all ions whether they are from a solute or from the mobile phase. In order to prevent polarization of the sensing electrodes, AC voltages must be used and so it is the impedance not the resistance of the electrode system that is actually measured. From a physical chemistry stand point the conductivity of a solution is more important than its resistance. However, it is the resistance (impedance) of the electrode system that determines the current across it. The resistance of any conductor varies directly as its length and inversely as its cross sectional area.	WEB:<http://www.chromatography-online.org/HPLC-Detectors/Electrical-Conductivity/rs83.html>|http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01239		PERSON:Daniel Schober						device	measure function				
OBI:0000566	NMR instrument	NMR instrument	metadata complete	NMR instrument|magnetic resonance imaging scanner|MRI scanner	An Instrument which is used to carry out a NMR analysis of some sample.	http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400059|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober		NMR instrument				device	measure function				
OBI:0000567	Bruker UltraShield NMR magnet	Bruker UltraShield NMR magnet	metadata complete		An NMR magnet manufactured by Bruker that ensures field homogeneity without amplified effects from vibrations or thermal changes. This magnet technology uses active shielding and optimizes coil design.	WEB:<http://www.bruker-biospin.com/nmr_magnets_us.html?&print=http%3A%2Fitsupportunit.com%2Fawstats%2Ficon%2Fnisum%2Fivuj%2F>|http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400187		PERSON:Daniel Schober		NMR instrument				Bruker NMR magnet					
OBI:0000568	piston-seal	piston-seal	metadata complete		The seal made by a piston in a diaphragm pump. The unique property of the reciprocating diaphragm pump is that the actuating piston does not come into direct contact with the mobile phase and thus, the demands on the piston-cylinder seal are not so great. The diaphragm has a relatively high surface area and thus, the movement of the diaphragm is relatively small and consequently the pump can be operated at a fairly high frequency. High frequency pumping results in a very significant reduction in pulse amplitude and, in addition, high frequency pulses are more readily damped by the column system. Nevertheless, it must be emphasized that diaphragm pumps are not pulseless.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01116|WEB:<http://www.chromatography-online.org/HPLC/Basic-HPLC/Pump/Diaphragm/rs15.html>		PERSON:Daniel Schober						chromatography consumable					
OBI:0000569	mass selective detector	mass selective detector	metadata complete	mass spectrometry detector	A mass selective detector is a GC detector that uses mass spectrometry. It is based upon the ionization of solute molecules in the ion source and the separation of the ions generated on the basis of their mass/charge ratio by an analyzer unit. This may be a magnetic sector analyzer, a quadruple mass filter, or an ion trap. Ions are detected by a dynode electron multiplier.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01198|WEB:<http://homepages.onsnet.nu/%7Ealkema/html/whatisgc.html>		PERSON:Daniel Schober						gas chromatography detector					
OBI:0000570	spin column	spin column	metadata complete		A spin column is a chromatography column which is suitable for putting it into a centrifuge. A spin column enforces separation through increased G-forces while spinning the column in a centrifuge. It is often used in DNA gel extraction kits.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01232|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober						chromatography column					
OBI:0000572	transfer line	transfer line	metadata complete		A combination of devices that are used in connection with a sampling head for transferring components of an applied sample to the analyzing part of a chromatography system.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01235|WEB:<http://www.freepatentsonline.com/5702671.html>		PERSON:Daniel Schober		chromatography device				chromatography device					
OBI:0000573	gradient pump system	gradient pump system	metadata complete		A pump system optimized for gradient chromatography.	WEB:<http://www.buchi.com/Gradient-Pump-System.531.0.html>|http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01050		PERSON:Daniel Schober						chromatography pump system					
OBI:0000574	high temperature column	high temperature column	metadata complete		A high temperature column is a chromatography column which is suitable for and withstands very high temperatures in chromatography ovens.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01233|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober						chromatography column					
OBI:0000575	Bruker Ultrastabilized NMR magnet	Bruker Ultrastabilized NMR magnet	metadata complete		An NMR magnet manufactured by Bruker for Ultra-High Field NMR, available from 750 MHz to 900 MHz, which provides reliable operation at reduced temperature and ambient pressure via being rigidly mounted and stabilized.	http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400188|WEB:<http://www.bruker-biospin.com/nmr_magnets_ultrastabilized.html?&print=http%3A%2Fitsupportunit.com%2Fawstats%2Ficon%2Fnisum%2Fivuj%2F>		PERSON:Daniel Schober		NMR instrument				Bruker NMR magnet					
OBI:0000578	NMR sample tube	NMR sample tube	metadata complete		The sample-tube holds the NMR sample and sits in the nmr probe. It is usually a glass tube of 5-20mm diameter.	http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400132|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober		NMR device				test tube			NMR instrument		
OBI:0000579	Varian UNITY spectrometer	Varian UNITY spectrometer	metadata complete		The predecessor series of the Varian UNITY INOVA spectrometer.	WEB:<http://www.scs.uiuc.edu/NMR/instruments/u400.php>|http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400237		PERSON:Daniel Schober		NMR instrument				Varian NMR instrument					
OBI:0000580	AVANCE II spectrometer	AVANCE II spectrometer	metadata complete		A spectrometer suitable for metabolomics and in vivo NMR studies but structural analysis of small molecules and low molecular weight proteins can also be performed. To accomplish these studies there are six probe-heads available. A successor, the AVANCE III came out recently.	WEB:<http://cermax.itqb.unl.pt/mambo/en/index.php?option=com_content&task=view&id=36&Itemid=93>|http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400197		PERSON:Daniel Schober		NMR instrument				Bruker NMR instrument					
OBI:0000581	y-column connector	y-column connector	metadata complete		A column connector that connects one column on one side with two columns at the other side, hence building a Y shaped structure.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01237|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober						column connector					
OBI:0000582	Bruker LC-NMR/MS platform	Bruker LC-NMR/MS platform	metadata complete		Includes the connection to a high-resolution TOF-LC-MS system.	http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400277|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober		NMR instrument|hyphenated NMR instrument platform				Bruker NMR instrument					
OBI:0000583	refractive index detector	refractive index detector	metadata complete		For analyzing non-UV absorbing substances, such as carbohydrates, lipids and polymers. This is also the detector of choice for gel permeation chromatography. The refractive index detector is one of the least sensitive LC detectors. It is very sensitive to changes in ambient temperature, pressure changes, flow-rate changes and can not be used for gradient elution. Despite these many disadvantages, this detector is extremely useful for detecting those compounds that are nonionic, do not adsorb in the UV, and do not fluoresce. There are many optical systems used in refractive index detectors but one of the most common is the differential refractive index detector.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01081|WEB:<http://www.chromatography-online.org/HPLC/Refractive-Index/rs33.html>		PERSON:Daniel Schober						device	measure function				
OBI:0000584	anion exchange column	anion exchange column	metadata complete		An anion exchange column is a chromatography column that is used in anion exchange chromatography and which enables the separation of anion mixtures.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01095|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober						ion exchange column					
OBI:0000586	plunger column	plunger column	metadata complete		A plunger column is a chromatography column with adjustable heigth control. By means of an adjustable endpiece (plunger) the user can adjust the column length without disturbing the packed bed. Plunger columns can equalize volume changes and thus avoids dead volumes within the column.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01108|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober						chromatography column					
OBI:0000588	flame photometric detector	flame photometric detector	metadata complete	FPD	The determination of sulfur or phosphorus containing compounds is the job of the flame photometric detector (FPD). This device uses the chemiluminescent reactions of these compounds in a hydrogen/air flame as a source of analytical information that is relatively specific for substances containing these two kinds of atoms. The emitting species for sulfur compounds is excited S2. The lambda max for emission of excited S2 is approximately 394 nm. The emitter for phosphorus compounds in the flame is excited HPO (lambda max = doublet 510-526 nm). In order to selectively detect one or the other family of compounds as it elutes from the GC column, an interference filter is used between the flame and the photomultiplier tube (PMT) to isolate the appropriate emission band. The drawback here being that the filter must be exchanged between chromatographic runs if the other family of compounds is to be detected.	WEB:<http://www.shsu.edu/~chemistry/FPD/FPD.html>|http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01091		PERSON:Daniel Schober						gas chromatography detector					
OBI:0000589	chromatography pump system	chromatography pump system	metadata complete		Better flow rates can be achieved by using a pump or by using compressed gas (e.g. air, nitrogen, or argon) to push the solvent through the column (flash column chromatography).	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01046|WEB:<http://en.wikipedia.org/wiki/Column_chromatography>		PERSON:Daniel Schober						chromatography instrument					
OBI:0000590	Bruker 1mm MicroProbe	Bruker 1mm MicroProbe	metadata complete		Over the past few years there has been a significantly growing demand for miniaturization in all areas ofmodern research and development. Evoked by many exciting applications, there is a need for analytical methods which require less amounts of sample. Bruker BioSpin meets this challenge with a revolutionary NMR probe design: The 1mm MicroProbe. It operates with disposable 1mm capillary sample tubes and the sample volume of 5 microliters enables the use of lowest amounts of sample to run all high resolution NMR experiments with outstanding sensitivity and up to 16 times faster measurements. Due to the TXI-type probe design, the z-gradient coil and the automatic matching and tuning accessory, the 1mm MicroProbe can be used for a wide variety of NMR experiments. The key advantages of this probe include:\n   up to 4 times higher mass sensitivity than 5mm conventional probes (with respect to the same sample amount)\n   excellent solvent suppression properties\n   virtually no salt effect\n   discrete samples in tubes that can be sealed and stored\n   automation accessory for sample preparation and handling available.	http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400194|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober		NMR probe				Bruker NMR probe					
OBI:0000591	Bruker BEST NMR system	Bruker BEST NMR system	metadata complete	Bruker Efficient Sample Transfer NMR	The introduction of biological screening and combinatorial chemistry for chemical synthesis has also introduced new requirements for NMR automation, e.g., the use of well plates for sample input, increased demands on throughput, and the need for quick and simple interpretation of the acquired NMR data.	WEB:<http://www.bruker-biospin.com/automation.html>|http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400206		PERSON:Daniel Schober		NMR instrument				Bruker autosampler					
OBI:0000592	chromatography detector filter	chromatography detector filter	metadata complete		An optical filter that is used to obtain monochromatic light of a defined wavelength from detector lamps.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01121|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober						chromatography consumable					
OBI:0000593	cation trap column	cation trap column	metadata complete		A cation trap column is a trap column and ion-exchange column which contains anionic cation-exchange resins.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01278|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober						trap column					
OBI:0000594	column adapter	column adapter	metadata complete		An Adapter that enabled the connection of a column to additional devices.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01113|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober		chromatography device				chromatography device					
OBI:0000595	pulsed amperometric detector	pulsed amperometric detector	metadata complete	PAD	A chromatography detector as used by high-performance anion exchange chromatography that provides sensitive and specific detection of carbohydrates. Pulsed Electrochemical Detection (PED) allows simple, sensitive, and direct detection of numerous polar aliphatic compounds, especially carbohydrates. This technique exploits the electrocatalytic activity of noble metal electrode surfaces to oxidize various polar functional groups. In PED, multi-step potential-time waveforms at Au and Pt electrodes realize amperometric/coulometric detection while maintaining uniform and reproducible electrode activity. The response mechanisms in PED are dominated by the surface properties of the electrode, and, as a consequence, members of each chemical class of compounds produce virtually identical voltammetric responses. Thus, the full potential is realized when combined with high performance liquid chromatography (HPLC).	WEB:<http://adsabs.harvard.edu/abs/2004SPIE.5261..103L>|http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01240		PERSON:Daniel Schober						device	measure function				
OBI:0000596	Bruker NMR instrument	Bruker NMR instrument	metadata complete		An NMR instrument that is manufactured by Bruker.	http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400198|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober		NMR instrument				NMR instrument					
OBI:0000597	Bruker NMR magnet	Bruker NMR magnet	metadata complete		An NMR magnet that is manufactured by Bruker.	http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400186|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober		NMR instrument				NMR magnet					
OBI:0000598	ozone-induced chemiluminescence detector	ozone-induced chemiluminescence detector	metadata complete		Although there are many direct ozone chemiluminescent reactions with various gaseous molecules, the incorporation of a conversion step to convert various non-chemiluminescent analytes to a species capable of reacting with ozone to produce chemiluminescence broadens the horizon of this technique tremendously. The conversion of nearly all nitrogen- and sulfur-containing compounds to their respective chemiluminescent species for universal nitrogen and sulfur detection has made nitrogen/sulfur chemiluminescence detection the most widely used analytical methods based upon ozone-induced chemiluminescence. In addition to non-chromatographic applications, nitrogen/sulfur chemiluminescence detection has been adapted to various chromatographic techniques from gas chromatography to liquid and supercritical fluid chromatography as specialized element-specific detectors. The characteristics of these detectors are evaluated and compared to other element-selective detection techniques. The unique features of the chemiluminescence detectors have made them powerful tools in many diverse fields of analytical chemistry.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01088|WEB:<http://sangerhinxtongbr.library.ingentaconnect.com/content/els/00219673/1999/00000842/00000001/art00177>		PERSON:Daniel Schober						gas chromatography detector					
OBI:0000599	tecmag NMR console	tecmag NMR console	metadata complete		An NMR console manufactured by tecmac.	http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400246|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober		NMR instrument				NMR console					
OBI:0000600	JEOL NMR instrument	JEOL NMR instrument	metadata complete		An NMR instrument that is manufactured by JEOL.	http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400226|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober		NMR instrument				NMR instrument					
OBI:0000601	chromatography consumable	chromatography consumable	metadata complete		A chromatography consumable is a consumable that is used in a chromatography experiment.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01115|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober		chromatography device				chromatography device					
OBI:0000602	column frit	column frit	metadata complete		A part of the column content that separates column packing compartments. In radial columns the packing is supported between two cylindrical frits and the gap between represents the bed height or column length. The outer frit is the column inlet and consequently the sample initially has a large area of stationary phase with which to interact. Frits are porous metal products to prevent unwanted particles from entering the chromatography system. These particles may come from the sample, the solvent or debris generated by the chromatography system itself. Such particles entering the system may lead to clogging of capillaries, interference with the chromatography by changing chromatographic parameters or disturbance of the detector function. Characteristics of a frit, besides the diameter and the thickness, is the porosity (pore distribution, density).	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01070|WEB:<http://www.chromatography-online.org/topics/radial/columns.html>		PERSON:Daniel Schober		chromatography device				chromatography device					
OBI:0000603	liquid chromatography column	liquid chromatography column	metadata complete		A liquid chromatography column is a chromatography column that is used in liquid chromatography, i.e. a column that is provided with a liquid sample mix.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01227|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober						chromatography column					
OBI:0000604	detector lamp	detector lamp	metadata complete		A lamp used in a chromatography detector that excites sample molecules at certain frequencies / emission wavelengths, e.g. Mercury Vapor Lamp (253.7 nm), Zinc Vapor Lamp (2123.9 nm and 307.6 nm), Cadmium Vapor Lamp (228.8, 326.1,340.3, and 346.6 nm). To obtain monochromatic light an appropriate light filter would be needed.	WEB:<http://www.chromatography-online.org/HPLC/UV-Detectors/Fixed-Wavelength/rs23.html>|http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01119		PERSON:Daniel Schober						chromatography consumable					
OBI:0000605	chart recorder	chart recorder	metadata complete		The chart recorder is a device that transduces signal-intensities into a graphical peak output: As the separated components of the gas sample emerge into the detector, the change in voltage in the detecting bridge circuit causes a representative peak to be drawn on a chart recorder. The position of the peak along the time axis of the chart measures the component's retention time, which identifies the component. This is directly related to carrier gas flow rate, temperature and column packing and dimensions. The area under each peak is proportional to the concentration of the component of the sample. The area of the peaks inscribed on the chart recorder can be determined by multiplying the height of the peak in mm, by the width of the peak in mm at 1/2 the peak height. The calibration curves for use with the chart recorder are therefore peak area plotted against concentration.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01069|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober		chromatography device				chromatography device					
OBI:0000606	open tubular column	open tubular column	metadata complete		An open tubular column is a chromatography column in which the particles of the solid stationary phase or the support coated with a liquid stationary phase are concentrated on or along the inside tube wall leaving an open, unrestricted path for the mobile phase in the middle part of the tube.	WEB:<http:www.iupac.org/publications/pac/1993/pdf/6504x0819.pdf>|http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01219		PERSON:Daniel Schober						chromatography column					
OBI:0000607	high resolution magic angle spin probe	high resolution magic angle spin probe	metadata complete	high resolution MAS, hr-MAS	Samples that are neither solid nor liquid, being of biological, chemical, or pharmaceutical interest, reveal highly resolved spectra when magic angle spinning is applied. The correct solution is a gradient, such that the field varies along the spinner axis. This so-called Magic Angle Gradient is employed in Brukers high resolution Magic Angle Spinning (hr-MAS) probes, and is implemented in such a way that it is compatible with the stator and does not interfere with the sample eject or insert. Bruker BioSpin has developed a series of dedicated probes for standard bore magnets to accommodate the rapidly expanding field of hr-MAS. These probes are available in double (e.g. 1H and 13C) and triple resonance (e.g. 1H, 13C, 15N) modes and come equipped with a deuterium lock channel. The probes have automatic sample ejection and insertion capability, with the availability of an optional sample changer, enabling fully automated sample runs. Probes can be equipped with an optional B0 gradient, directed along the magic angle, so that gradient spectroscopy can be done used.	http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400192|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober		NMR probe				Bruker high resolution probe					
OBI:0000608	hydrogen generator	hydrogen generator	metadata complete		A gas generator that generates hydrogen gas.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01035|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober						gas generator					
OBI:0000609	glass column	glass column	metadata complete		A glass column is a chromatography column made out of glass that is usually used for larger scale and preparative liquid chromatography separations.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01101|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober						chromatography column					
OBI:0000610	auto injector	auto injector	metadata complete		A gas chromatography device that can auto-inject a small number of samples an inlet.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01058|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober						sample injection system					
OBI:0000611	Varian NMR instrument	Varian NMR instrument	metadata complete		An NMR instrument that is manufactured by Varian.	http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400234|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober		NMR instrument				NMR instrument					
OBI:0000612	Bruker MATCH tube holder system	Bruker MATCH tube holder system	metadata complete	Bruker Multiple Adjustable Tube Clamp Holder	The Bruker Multiple Adjustable Tube Clamp Holder MATCH system is a holder for 100 mm long NMR sample tubes with diameters ranging from micro tubes up to 5 mm NMR tubes. The MATCH insert fits into a standard 10 mm Bruker spinner and is suitable for all non-spinning applications.\n   The MATCH system provides an easy and cost efficient means of optimizing the signal-to-noise ratio of each sample. By matching the NMR tube diameter to the size of the sample, most of the sample can be placed in the active column of the NMR coil. This leads to an enhanced signal detection compared to diluting the same sample quantity in a larger tube.	http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400211|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober		NMR instrument				NMR sample holder					
OBI:0000613	Bruker SPE-NMR platform	Bruker SPE-NMR platform	metadata complete		A Solid Phase Extraction (SPE) system provides an interface between liquid chromatography (LC) and NMR. For the process of LC-SPE  NMR a chromatographic separation is done and the peaks of interest are trapped on an individual SPE cartridge after the column. The peak selection is done either by UV detection or by evaluation of the on-line registered MS or MSn spectra.	http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400278|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober		NMR instrument|hyphenated NMR instrument platform				Bruker NMR instrument					
OBI:0000614	guard column	guard column	metadata complete		Guard columns are installed between the injection valve and the analytical or preparative column and here will remove contaminants and prolong the lifetime of the columns.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01111|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober		chromatography device				chromatography device					
OBI:0000616	high resolution probe with automatic tuning and matching	high resolution probe with automatic tuning and matching	metadata complete	High Resolution Probes with Automatic Tuning and Matching, HR_probe_with_ATM	The Automatic Tuning and Matching (ATM) option for AVANCE spectrometers is available for double resonance probes in fixed-frequency and broadband tunable configurations with either direct or indirect detection. Thus, for multinuclear operation, as often required for applications in inorganic chemistry, ATM facilitates the accurate setting of 90 degree pulse widths on both observe and decoupling channels for each chosen nucleus and each individual sample - even with full automation. Triple resonance probes in fixed-frequency configurations, as typically used for inverse detection with high-field systems.	http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400224|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober		NMR probe				Bruker high resolution probe					
OBI:0000617	fluorine-induced chemiluminescence detector	fluorine-induced chemiluminescence detector	metadata complete		A gas chromatographic detection system based on the low pressure, gas phase chemiluminescence of the reaction mixture of molecular fluorine with organo-sulfur, -selenium, and -tellurium compounds separated from (gas phase) headspace samples. This detector was originally developed in the research group of John Birks at the University of Colorado, USA and was manufactured and sold by Sievers Instruments (Boulder Colorado, USA). This system can be divided up into three parts: the chromatograph, transfer line, and reaction cell; PMT and photon counting electronics; and the molecular fluorine generator.	WEB:<http://www.shsu.edu/~chm_tgc/publications/JPP/chasteen.htm>|http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01087		PERSON:Daniel Schober						gas chromatography detector					
OBI:0000618	size exclusion column	size exclusion column	metadata complete		A size exclusion column is a chromatography column as used in size exclusion chromatography and which enables the separation of mixtures according to differrences in molecular size.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01100|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober						chromatography column					
OBI:0000619	chromatography splitter	chromatography splitter	metadata complete		An adjustable restriction that is placed in the waste outlet to allow the necessary pressure to develop at the column inlet to force a flow (q ml/min) through the column. If the flow of mobile phase is Q ml/min then the waste flow will be (Q-q) ml/min. by adjusting the waste flow, the proportion of the sample entering the capillary column can be varied over a wide range of values and the necessary minimum permissible volume for the particular column in use can be selected for analysis. Unfortunately, the fraction taken in this way may not be representative of the original sample. This is due to the individual solutes in the mixture having different diffusivities and, thus, they distribute themselves across the sampling tube in an irregular manner. In general, the components with higher diffusivities (e.g., those solutes of lower molecular weight) will diffuse away from the bulk sample more quickly than those having lower diffusivities.	WEB:<http://www.chromatography-online.org/EC-Dispersion/GC-Capillary-Columns/rs13.html>|http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01041		PERSON:Daniel Schober		chromatography device				chromatography device					
OBI:0000620	Bruker micro imaging probe	Bruker micro imaging probe	metadata complete		For medical, biological and material sciences research, avance imaging systems provide optimal object handling and performance with a variety of samples types. Two classes of imaging probes are available: in vivo probes for handling and sustaining live objects such as animals and plants, and conventional imaging probes for materials samples.	WEB:<http://www.bruker-biospin.com/probes_microimaging.html>|http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400225		PERSON:Daniel Schober		NMR probe				Bruker NMR probe					
OBI:0000621	custom made column	custom made column	metadata complete		A custom made column ia a chromatography column which is specifically tailored according to the needs of the separation as requested by a scientist or working group.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01234|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober						chromatography column					
OBI:0000622	gel permeation column	gel permeation column	metadata complete		A gel permeation column is a chromatography column which is used in gel permeation chromatography and which employs as the stationary phase a swollen gel made by polymerizing and cross-linking styrene in the presence of a diluent which is a nonsolvent for the styrene polymer. The polymer to be analyzed is introduced at the top of the column and then is elutriated with a solvent. The polymer molecules diffuse through the gel at rates depending on their molecular size.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01103|WEB:<http://composite.about.com/od/glossaries/l/bldef_g2419.htm>		PERSON:Daniel Schober						chromatography column					
OBI:0000624	Bruker SampleJet system	Bruker SampleJet system	metadata complete		Bruker BioSpin introduces the SampleJet, a robot for NMR tube automation. The SampleJet has been consciously designed to meet the growing customer demand for simplicity, versatility and higher throughput in NMR sample tube automation.\n  The SampleJet utilizes the modern-day industry standard for sample arrangements-the 96 well plate array. Therefore, the samples may be handled by standard lab automation devices before or after the NMR measurement.	WEB:<http://www.bruker-biospin.com/automation.html>|http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400208		PERSON:Daniel Schober		NMR instrument				Bruker autosampler					
OBI:0000625	JEOL ECX NMR spectrometer	JEOL ECX NMR spectrometer	metadata complete		The ECX series of NMR spectrometers is designed for any laboratory needing an easy-to-use, reliable, routine NMR system. The ECX NMR series is available from 300 to 500 MHz. The console is designed around a modular, digital NMR electronics chassis controlled by an intelligent acquisition computer. For unprecedented flexibility, the JEOL NMR system offers a Windows XP, Mac OSX or LINUX. Both the workstation and spectrometer may be connected to a standard network, allowing seamless remote operation anywhere in the world.	WEB:<http://www.jeol.com/PRODUCTS/AnalyticalInstruments/NuclearMagneticResonance/ECX/tabid/145/Default.aspx>|http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400227		PERSON:Daniel Schober		NMR instrument				JEOL NMR instrument					
OBI:0000627	quaternary pump system	quaternary pump system	metadata complete		A pump system that pump and mix up to four different solvents in parallel.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01047|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober						chromatography pump system					
OBI:0000628	carbon nanotube column	carbon nanotube column	metadata complete		Carbon nanotubes (CNTs) are known to have high thermal and mechanical stability and have the potential to be high-performance separation media that utilize the nanoscale interactions. CNT can be applied in long capillary tubes for the development of gas chromatography columns. A film of CNTs can be deposited by chemical vapor deposition (CVD) to form the stationary phase in the open tubular format. Altering the CVD conditions can vary the thickness and the morphology of the CNT film, which opens the possibility of selectivity tuning. The ability to fabricate long tubes coated with CNTs can be readily employed in other gas- and liquid-phase separations as well.	WEB:<http://pubs.acs.org/cgi-bin/abstract.cgi/ancham/2005/77/i21/abs/ac050812j.html>|http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01107		PERSON:Daniel Schober						chromatography column					
OBI:0000629	Bruker solid magic angle spinning probe	Bruker solid magic angle spinning probe	metadata complete	solid MAS probe	Magic angle spinning, nowadays a routine technique for solids NMR, still offers the capability of innovation. The high mechanical performance of MAS probes in conjunction with efficient rf pulse techniques open new exciting fields in solids NMR of biological samples and in the field of quadrupolar nuclei.	http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400193|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober		NMR probe				Bruker NMR probe					
OBI:0000631	Varian MERCURY spectrometer	Varian MERCURY spectrometer	metadata complete		MERCURYplus spectrometers provide superior control, stability, and performance for high-productivity environments. Surface-mount electronics enable a small footprint without compromising data quality. Modular design allows flexible configuration. Direct digital synthesis, linear amplifiers, and other innovative RF and digital technologies enable push-button operation.	http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400235|WEB:<http://www.varianinc.com/cgi-bin/nav?varinc/docs/products/NMR/spectromet/mercury/index&cid=975JINLIKLRMPGLMNOILJ>		PERSON:Daniel Schober		NMR instrument				Varian NMR instrument					
OBI:0000632	Bruker Metabolic Profiler	Bruker Metabolic Profiler	metadata complete		An NMR platform for conducting metabonomics studies, traditional metabolism studies, and analysis of complex mixtures, featuring an Avance NMR spectrometer and a microTOF from Bruker Daltonics. By combining the structural resolving power of NMR with mass accuracy of the microTOF Bruker offers a complete system for metabolic research. The Metabolic Profiler provides a simple, easy to use and inexpensive base-system to acquire the spectroscopic data, needed to do basic metabolic profiling including metabonomic statistical analysis.	http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400199|WEB:<http://www.bruker-biospin.com/metabolicprofiler.html>		PERSON:Daniel Schober		NMR instrument|hyphenated NMR instrument platform				Bruker NMR instrument					
OBI:0000633	column heater	column heater	metadata complete		The glass liner can be fitted with a separate heater and the volatilization temperature can, thus, be controlled. This flash heater system is available in most chromatographs. By using a syringe with a long needle, the tip can be made to penetrate past the liner and discharge its contents directly into the column packing. This procedure is called 'on-column injection' and, as it reduces peak dispersion on injection and thus, provides higher column efficiencies, is often the preferred procedure.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01040|WEB:<http://www.chromatography-online.org/GC/Injection-Devices/Open-Tubular-Column/rs15.html>		PERSON:Daniel Schober						chromatography instrument					
OBI:0000635	JEOL CapNMR probe	JEOL CapNMR probe	metadata complete		The JEOL ECA and ECX NMR spectrometers now support the MRM/Protasis CapNMR Probe for well plate-based and microvial-based NMR analysis. The CapNMR probe is available at proton frequencies ranging from 300 MHz to 800 MHz in both indirect configurations (e.g. 1H{13C} and 1H {31P}) and also in triple resonance configurations (e.g. 1H{13C, 15N}, 1H{31P, 15N}). Both employ a high-strength z-directed field gradient. The flowprobes come with the choice of two flowcell volumes: a 5 μl flowcell with an NMR active volume of 2.5 μl, and a 10 μl flowcell with an NMR active volume of 5 μl. The fluidic connections are 75 μm i.d. and 1/32 o.d. FEP Teflon with hastelloy unions for exceptional solvent compatibility.	http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400233|WEB:<http://www.jeol.com/PRODUCTS/AnalyticalInstruments/NuclearMagneticResonance/CapNMRProbe/tabid/396/Default.aspx>		PERSON:Daniel Schober		NMR probe				JEOL NMR probe					
OBI:0000636	acquisition computer	acquisition computer	metadata complete		A Computer used for NMR, can be divided into central processing unit (CPU), consisting of instruction, interpretation and arithmetic unit plus fast access memory, and peripheral devices such as bulk data storage and input and output devices (including, via the interface, the spectrometer). Under software control, the computer controls the RF pulses and gradients necessary to acquire data, and process the data to produce spectra or images. Note that devices such as the spectrometer may themselves incorporate small computers.	http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400013|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober		NMR instrument				computer	information processor function				
OBI:0000637	gas chromatography detector	gas chromatography detector	metadata complete	FID	A gas chromatography detector is a chromatography detector that locates in the dimensions of space and time, the positions of the components of a mixture that has been subjected to a gas chromatographic process and thus permits the senses to appreciate the nature of the separation. There is no LC detector that has an equivalent performance to the flame ionization detector (FID) used in GC. In general, LC detectors have sensitivities of two to three orders of magnitude less than their GC counterparts and linear dynamic ranges one to two orders of magnitude lower. Only highly specific LC detectors have sensitivities that can approach those of GC detectors.	WEB:<http://www.chromatography-online.org/GC-Detectors/Classification/rs1.html>|http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01083		PERSON:Daniel Schober		chromatography detector, defined class/xps				chromatography detector					
OBI:0000638	gas purifier	gas purifier	metadata complete		Gas purifiers are instruments used for the removal of gas impurities like hydrocarbons, oxygen, and moisture from carrier gas and fuel gases for GC or GC-MS systems.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01036|WEB:<http://www.sigmaaldrich.com/Area_of_Interest/Analytical__Chromatography/Gas_Chromatography/Accessories/SGT_Gas_Purifier.html>		PERSON:Daniel Schober		gas chromatography equipment				gas chromatography equipment					
OBI:0000640	indirect detection probe	indirect detection probe	metadata complete		An NMR probe designed to allow the indirect detection of acquisition nuclei.	http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400281|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober		NMR device				NMR probe					
OBI:0000641	JEOL ECA NMR spectrometer	JEOL ECA NMR spectrometer	metadata complete		The ECA series of NMR spectrometers is a high performance, research grade NMR system configurable to a wide range off applications. The ECA NMR is available from 300 to 930 MHz field strengths and is 1GHz ready. The system is designed around a modular, digital NMR electronics chassis controlled from a UNIX or Windows workstation and acquisition system. Both the workstation and spectrometer may be connected to a standard network, allowing seamless remote operation anywhere in the world.	WEB:<http://www.jeol.com/PRODUCTS/AnalyticalInstruments/NuclearMagneticResonance/ECA/tabid/146/Default.aspx>|http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400228		PERSON:Daniel Schober		NMR instrument				JEOL NMR instrument					
OBI:0000642	atomic emission detector	atomic emission detector	metadata complete	AED	Instead of measuring simple gas phase (carbon containing) ions created in a flame as with the flame ionization detector, or the change in background current because of electronegative element capture of thermal electrons as with the electron capture detector, the AED has a much wider applicability because it is based on the detection of atomic emissions. The strength of the AED lies in the detector's ability to simultaneously determine the atomic emissions of many of the elements in analytes that elute from a GC capillary column (called eluants or solutes in some books). As eluants come off the capillary column they are fed into a microwave powered plasma (or discharge) cavity where the compounds are destroyed and their atoms are excited by the energy of the plasma. The light that is emitted by the excited particles is separated into individual lines via a photodiode array. The associated computer then sorts out the individual emission lines and can produce chromatograms made up of peaks from eluants that contain only a specific element.	WEB:<http://elchem.kaist.ac.kr/vt/chem-ed/sep/gc/detector/aed.htmt>|http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01086		PERSON:Daniel Schober						gas chromatography detector					
OBI:0000689	454 Genome Sequence 20	454 Genome Sequence 20	metadata complete	GS 20	is a DNA sequencer first manufactured by 454 Life Science Corporation in 2005, and enables pyrosequencing to be performed. It comprises both optics and fluidics subsystems, which are controlled by a computer subsystem. The fluidics subsystem ensures accurate reagent dispensing. It consists of a reagents cassette (which holds the reagent containers), a sipper manifold, pumps, valves, and debubblers. The fluidics subsystem flows the sequencing reagents across the wells of the PicoTiterPlate device, and moves the spent reagents from the PicoTiterPlate device to the waste receptacle. The optics subsystem consists of a CCD camera and a camera controller. The camera captures the light emitted in the wells of the PicoTiterPlate device during each step of the sequencing cycle, and sends the digital images to the computer subsystem for processing. The computer controls the other Sequencer subsystems, and processes the digital images sent by the camera to extract the DNA sequence information.		PMID: 18946007.Pyrosequencing analysis of the oral microflora of healthy adults.  Keijser BJ, Zaura E, Huse SM, van der Vossen JM, Schuren FH, Montijn RC, ten Cate JM, Crielaard W. J Dent Res. 2008 Nov;87(11):1016-20.	Philippe Rocca-Serra						DNA sequencer				Roche	
OBI:0000691	ABI 377 automated sequencer	ABI 377 automated sequencer	metadata complete		is a DNA sequencer which is manufactured by Applied Biosystems corporation (formerly Perkin-Elmer). It allows automated chain termination DNA sequencing. It has part polyacrylamide gel electrophoresis system and a laser -based detection system to detect fluorescence intensity emitted by the dyes attached to the dideoxyterminator nucleotides or to the primers.	Applied Biosystems		Philippe Rocca-Serra						DNA sequencer				Applied Biosystems	
OBI:0000696	AB SOLiD System	AB SOLiD System	metadata complete		is a DNA sequencer which is manufactured by Applied Biosystems and which enable DNA sequencing by ligation	Applied Biosystems	PMID: 19336255. RNA-Seq-quantitative measurement of expression through massively parallel RNA-sequencing. Wilhelm BT, Landry JR. Methods. 2009 Jul;48(3):249-57.	Philippe Rocca-Serra						DNA sequencer				Applied Biosystems	
OBI:0000702	454 Genome Sequencer FLX	454 Genome Sequencer FLX	metadata complete	454 GS FLX|GS-FLX	is a DNA sequencer which was first manufactured by 454 Life Science Corporation in 2008 and enables pyrosequencing to be performed. It comprises both optics and fluidics subsystems, which are controlled by a computer subsystem. The fluidics subsystem ensures accurate reagent dispensing. It consists of a reagents cassette (which holds the reagent containers), a sipper manifold, pumps, valves, and debubblers. The fluidics subsystem flows the sequencing reagents across the wells of the PicoTiterPlate device, and moves the spent reagents from the PicoTiterPlate device to the waste receptacle. The optics subsystem consists of a CCD camera and a camera controller. The camera captures the light emitted in the wells of the PicoTiterPlate device during each step of the sequencing cycle, and sends the digital images to the computer subsystem for processing. The computer controls the other Sequencer subsystems, and processes the digital images sent by the camera to extract the DNA sequence information.  It has the ability to sequence 400-600 million base pairs per run with 400-500 base pair read lengths.	adapted from https://www.roche-applied-science.com/servlet/RCProductDisplay?langId=-1&storeId=10202&productId=3.8.8.1.1.3&catalogId=10202&krypto=mgV8a0Sdps6%2BCXU8IoddmzNEyGgjde9j8MOFCiMzRsduELeenAlVZ%2FE1QR%2BxLpzNlqMZPLRHqaI%3D&ddkey=https:RCProductDisplay	PMID: 18616967. The Genome Sequencer FLX System--longer reads, more applications, straight forward bioinformatics and more complete data sets.  Droege M, Hill B.  J Biotechnol. 2008 Aug 31;136(1-2):3-10.	Philippe Rocca-Serra						DNA sequencer				Roche	
OBI:0000703	Illumina Genome Analyzer II	Illumina Genome Analyzer II	metadata complete		is a DNA sequence which is manufactured by Illumina (Solexa) corporation. it support sequencing of single or paired end clone libraries relying on sequencing by synthesis technology	Illumina Corporation	PMID: 19336255. RNA-Seq-quantitative measurement of expression through massively parallel RNA-sequencing. Wilhelm BT, Landry JR.Methods. 2009 Jul;48(3):249-57.	Philippe Rocca-Serra						DNA sequencer				Illumina	
OBI:0000710	Li-Cor 4300 DNA Analysis System	Li-Cor 4300 DNA Analysis System	metadata complete		is a DNA sequencer which is manufactured by Li-Cor corporation and enable automated chain termination based DNA sequencing	OBI and Li-Cor		Philippe Rocca-Serra						DNA sequencer				Li-Cor	
OBI:0000717	HeliScope Single Molecule Sequencer	HeliScope Single Molecule Sequencer	metadata complete		is a DNA sequencer manufacturer by Helicos Corporation to carry out Single Molecule sequencing using reversible termination chemistry			Philippe Rocca-Serra						DNA sequencer				Helicos	
OBI:0000784	anticoagulant-containing test tube	anticoagulant-containing test tube	metadata complete		A 'blue top' test tube that contains anticoagulant for storing blood specimens'			Person:Alan Ruttenberg		2009/09/28 Alan Ruttenberg. Fucoidan-use-case				test tube					('surrounded by' some ('has part' some ('has grain' some 'sodium citrate dihydrate')))
OBI:0000795	glucometer	glucometer	ready for release	glucose meter	A measurement device with the function to measure and record the level/amount of glucose in a blood sample	http://en.wikipedia.org/wiki/Glucose_meter	Diabetic patients use glucometers to determine their glucose levels	PERSON:Frank Gibson|PERSON:Helen Parkinson						device	measure function				
OBI:0000816	micro electrode	micro electrode	metadata complete	micro electrode measuring device	An electrode of very fine caliber consisting usually of a fine wire or a glass tube of capillary diameter drawn to a fine point and filled with saline or a metal used in physiological experiments to stimulate or record action currents of extracellular or intracellular origin in the nervous system.	Jessica Turner, Dirk Derom	A micro-electrode recording device used to record extracellular action potentialsin monkey caudate nucleus	Helen Parkinson, Jessica Turner, Dirk Derom						device	measure function				
OBI:0000832	measurement device	measurement device	ready for release		A device in which a measure function inheres.	OBI	A ruler, a microarray scanner, a Geiger counter.	GROUP:OBI Philly workshop					equivalent	device	measure function				
OBI:0000836	test tube	test tube	metadata complete	sample tube|collection tube	A test tube is a device consisting of a glass or plastic tubing, open at the top, usually with a rounded U-shaped bottom which has the function to contain material	http://en.wikipedia.org/wiki/Test_tube		Bjoern Peters						vial	contain function				
OBI:0000843	Sysmex CA-6000 Coagulation Analyzer	Sysmex CA-6000 Coagulation Analyzer	metadata complete		The Sysmex CA-6000 automated coagulation analyzer is a random access instrument that is capable of performing 20 clot-based and chromogenic assays	web:http://www.clinchem.org/cgi/content/full/43/9/1783@2009/08/06		Person:Alan Ruttenberg		2009/09/28 Alan Ruttenberg. Fucoidan-use-case				device	measure function			Sysmex Corporation, Kobe, Japan	
OBI:0000930	calorimeter	calorimeter	metadata complete	calorimetry instrument?	A measurement device that is used to calculate the heat flow of a chemical reaction or physical change.	http://chemistry.about.com/od/chemistryglossary/a/calorimeterdef.htm		PERSON:Bjoern Peters						device	measure function				
OBI:0000932	material separation device	material separation device	metadata incomplete		A device with a separation function realized in a planed process		flow cytometer						equivalent	device	material separation function				
OBI:0000933	positron emission tomography scanner	positron emission tomography scanner	metadata complete	PET scanner?	A device that produces a three-dimensional image or picture of functional processes in the body. It detects pairs of gamma rays emitted indirectly by a positron-emitting radionuclide (tracer), which is introduced into the body on a biologically active molecule.	http://en.wikipedia.org/wiki/Positron_emission_tomography		PERSON:Bjoern Peters						device	image acquisition function				
OBI:0000935	micromanipulator	micromanipulator	metadata complete		A device that is used to physically interact with a sample under a microscope, where a level of precision of movement is necessary that cannot be achieved by the unaided human hand.	http://en.wikipedia.org/wiki/Micromanipulator		PERSON:Bjoern Peters						device	mechanical function				
OBI:0000940	optical microscope	optical microscope	metadata complete		A microscope that produces an image of an object by targeting it with an electro-magnetic beam in the visible frequency range			PERSON:Bjoern Peters						microscope					
OBI:0000945	vibration isolation table	vibration isolation table	metadata complete		A device  that supports another device such as a precision instrument by isolating it from vibration that is transmitted from the floor.	United States Patent 6877711		PERSON:Bjoern Peters						device	environment control function				
OBI:0000948	oscilloscope	oscilloscope	metadata complete		A device that measures and displayes signal voltages, usually as a two-dimensional graph of one or more electrical potential differences (vertical axis) plotted as a function of time or of some other voltage (horizontal axis).	http://en.wikipedia.org/wiki/Oscilloscope		PERSON:Bjoern Peters						device	measure function				
OBI:0000955	electrode puller	electrode puller	metadata complete		A device used in the first step in making electrodes, that applies constant tension on a glass capillary tube and eventually breaks it while heating it; this produces a very fine point on the capillary tube.	http://faculty.plattsburgh.edu/donald.slish/Puller1.html		PERSON:Bjoern Peters						device	mechanical function				
OBI:0000959	vibrotome	vibrotome	metadata incomplete		A preparation device that uses a vibrating razor blade to cut through tissue.									device	material separation function|('realized in' only 'material component separation')				
OBI:0000967	container	container	metadata incomplete		A device that can be used to restrict the location of material entities over time			PERSON: Bjoern Peters	03/21/2010: Added to allow classification of children (similar to what we want to do for 'measurement device'. Lookint at what classifies here, we may want to reconsider a contain function assigned to a part of an entity is necessarily also a function of the whole (e.g. is a centrifuge a container because it has test tubes as parts?)				equivalent	device	contain function				
OBI:0000982	computed tomography scanner	computed tomography scanner	metadata complete	CT scanner|X-ray computed tomography scanner	An image acquisition device that generates a three-dimensional image of the inside of an object from a large series of two-dimensional X-ray images taken around a single axis of rotation.	http://en.wikipedia.org/wiki/X-ray_computed_tomography		PERSON:Bjoern Peters						device	image acquisition function				
OBI:0000989	PCR instrument	PCR instrument	metadata incomplete		A device that is used to amplify a single or few copies of a piece of DNA across several orders of magnitude, generating thousands to millions of copies of a particular DNA sequence.				03/21/2010: Added because it is unclear if the thermal cycler definition is intentionally broader than PCR instrument. Contacted Melanie and Trish about this. Definitions and use of alternative terms need to be made consistent.					thermal cycler	('realized in' only 'polymerase chain reaction')				
OBI:0000990	electron microscope	electron microscope	metadata incomplete		A microscope that produces an image of an object by targeting it with an electron beam									microscope					
OBI:0001002	Faraday cage	Faraday cage	metadata complete	Faraday shield	A device formed by conducting material or by a mesh of such material, that blocks out external static electric fields.	Wikipedia http://en.wikipedia.org/wiki/Faraday_cage		PERSON:Bjoern Peters		isolation function? HP				device	environment control function				
OBI:0001032	light emission device	light emission device	metadata complete		A device which has a function to emit light.	OBI	A light source is an optical subsystem that provides light for use in a distant area using a delivery system (e.g., fiber optics)	Person:Helen Parkinson					equivalent	device	light emission function				
OBI:0001033	perturbation device	perturbation device	metadata incomplete		A perturbation device is a device which is designed to perform a perturb function	OBI Vancouver workshop 2010|PERSON: Helen Parkinson	|A homogenizer is a perturbation device.	Helen Parkinson					equivalent	device	perturb function				
OBI:0001034	environmental control device	environmental control device	metadata complete		An environmental control device is a device which has the function to control some aspect of the environment such as temperature, or humidity.	OBI	A growth chamber is an environmental control device.	Helen Parkinson					equivalent	device	('heat function' or 'cool function' or 'environment control function')				
OBI:0001044	angiograph	angiograph	metadata complete		A device that records the patterns of pulse waves inside blood vessels.	http://medical-dictionary.thefreedictionary.com/angiograph		PERSON: Erik Segerdell						device	measure function|record function				
OBI:0001045	capillary blotter	capillary blotter	metadata complete		A device that is used to transfer nucleic acids from agarose gels onto a membrane, based on the movement of buffer from a reservoir through the gel and the blotting membrane to a stack of dry blotting paper by capillary force. The molecules are carried to the blotting membrane on which they are adsorbed.	http://www.biometra.de/		PERSON: Erik Segerdell						device	transfer function				
OBI:0001046	bioreactor	bioreactor	metadata complete		A device or system that supports a biologically active environment.	http://en.wikipedia.org/wiki/Bioreactor		PERSON: Erik Segerdell						device	environment control function|mechanical function				
OBI:0001047	pH meter	pH meter	metadata complete		A device that is used to measure the pH (acidity or alkalinity) of a liquid.	http://en.wikipedia.org/wiki/PH_meter		PERSON: Erik Segerdell						device	measure function				
OBI:0001048	digital camera	digital camera	metadata complete		An image acquisition device that takes video or still photographs, or both, digitally by recording images via an electronic image sensor.	http://en.wikipedia.org/wiki/Digital_camera		PERSON: Erik Segerdell						device	image acquisition function				
OBI:0001049	chip spotting device	chip spotting device	metadata complete		A device for dropping and immobilizing a solution of biomolecules, for example, nucleic acids such as probe DNA, mRNA, and peptide nucleic acid (PNA), and proteins on a DNA microarray surface to manufacture a DNA microarray.	United States Patent 7416705		PERSON: Erik Segerdell						device	transfer function				
OBI:0001050	RNA extraction/purification instrument	RNA extraction/purification instrument	metadata complete		A device that is used to isolate and collect RNA for subsequent molecular analysis.	PERSON: Erik Segerdell		PERSON: Erik Segerdell						nucleic acid extraction/purification instrument					
OBI:0001052	two-photon laser/detector	two-photon laser/detector	metadata complete		A light source used in fluorescence imaging that allows the imaging of living tissue up to a depth of 1 mm, based on the concept that two photons of low energy can excite a fluorophore in a quantum event, resulting in the emission of a fluorescence photon, typically at a higher energy than either of the two excitatory photons.	http://en.wikipedia.org/wiki/Two-photon_excitation_microscopy		PERSON: Erik Segerdell						light source					
OBI:0001053	electrophoresis system	electrophoresis system	metadata complete		A device that moves charged particles through a medium by using an electric field induced by electrodes.	http://en.wikipedia.org/wiki/Category:Electrophoresis		PERSON: Erik Segerdell						device	material separation function				
OBI:0001054	PET synthesizer	PET synthesizer	metadata complete		A device that is used to produce targeted molecular pharmaceuticals for use in positron emission tomography.	PERSON: Erik Segerdell		PERSON: Erik Segerdell						device	synthesizing function				
OBI:0001055	spinning-disk confocal microscope	spinning-disk confocal microscope	metadata complete		A confocal microscope that uses a Nipkow disk, a mechanical, geometrically operating image scanning device.	http://en.wikipedia.org/wiki/Nipkow_disk		PERSON: Erik Segerdell						confocal microscope	measure function				
OBI:0001056	DNA synthesizer	DNA synthesizer	metadata complete		An oligonucleotide synthesizer that is used to custom-build DNA molecules to contain a particular sequence of nucleotides.	http://www.globalspec.com/LearnMore/Labware_Scientific_Instruments/Clinical_Research_Labware/DNA_Synthesizers		PERSON: Erik Segerdell						oligonucleotide synthesizer					
OBI:0001057	high performance liquid chromatography instrument	high performance liquid chromatography instrument	metadata complete		A liquid chromatography instrument that consists of a reservoir of mobile phase, a pump, an injector, a separation column, and a detector. The pump (rather than gravity) provides the higher pressure required to propel the mobile phase and analyte through the densely packed column.	http://en.wikipedia.org/wiki/High_performance_liquid_chromatography		PERSON: Erik Segerdell						liquid chromatography instrument					
OBI:0001058	microplate reader	microplate reader	metadata complete		A measurement device that detects biological, chemical or physical events of samples in microtiter plates.	http://en.wikipedia.org/wiki/Plate_reader		PERSON: Erik Segerdell						device	measure function				
OBI:0001059	ELISA microplate reader	ELISA microplate reader	metadata complete		A microplate reader that is used for enzyme-linked immunosorbent assays (ELISA).	PERSON: Erik Segerdell		PERSON: Erik Segerdell						microplate reader					
OBI:0001060	spot cutter	spot cutter	metadata complete		A robotic device that is used to excise spots from gels.	PERSON: Erik Segerdell		PERSON: Erik Segerdell						device	mechanical function				
OBI:0001061	microwave synthesis system	microwave synthesis system	metadata complete		A device that is used to apply microwave irradiation to chemical reactions.	http://en.wikipedia.org/wiki/Microwave_chemistry		PERSON: Erik Segerdell						device	excitation function|synthesizing function				
OBI:0001062	densitometer	densitometer	metadata complete		A device that measures the degree of darkness (the optical density) of a photographic or semitransparent material or of a reflecting surface.	http://en.wikipedia.org/wiki/Densitometer		PERSON: Erik Segerdell						device	measure function				
OBI:0001063	automatic staining machine	automatic staining machine	metadata complete		A device that is used to automatically stain tissue sections on slides or tissue specimens.	PERSON: Erik Segerdell		PERSON: Erik Segerdell						device	addition of molecular tracer function|mechanical function				
OBI:0001064	automatic tissue processor	automatic tissue processor	metadata complete		A device for processing histological tissue having a tissue carrier basket suspended from a turntable overlying a plurality of beakers suspended from a carrier plate. The turntable is raised, indexed, and lowered by a suitable driving mechanism to move the tissue basket sequentially through the beakers. Timers can each be programmed to control the movement of the turntable to provide various different cycles for processing the tissue. Some of the beakers are received in individual thermal baths to heat and control the temperature of the substances received in the beakers for treating the tissue.	United States Patent 3762362		PERSON: Erik Segerdell						device	mechanical function|reagent application function				
OBI:0001065	stereo microscope	stereo microscope	metadata complete		An optical microscope that uses two separate optical paths with two objectives and two eyepieces to provide slightly different viewing angles to the left and right eyes.	http://en.wikipedia.org/wiki/Optical_microscope#Stereo_microscope		PERSON: Erik Segerdell						optical microscope	measure function				
OBI:0001066	top loading balance	top loading balance	metadata complete		A balance that consists of a metal plate on which to place an object and a digital readout of the measurement of its mass.	PERSON: Erik Segerdell		PERSON: Erik Segerdell						balance					
OBI:0001067	perfusion station	perfusion station	metadata complete		A device or system in which perfusion units are integrated.	PERSON: Erik Segerdell		PERSON: Erik Segerdell						device	specimen fixation function				
OBI:0001068	SPECT scanner	SPECT scanner	metadata complete		A nuclear medicine tomographic imaging device that uses gamma rays to provide 3D information, typically presented as cross-sectional slices through the specimen but with the ability to be freely reformatted or manipulated as required.	http://en.wikipedia.org/wiki/Single_photon_emission_computed_tomography		PERSON: Erik Segerdell						device	measure function|image acquisition function				
OBI:0001070	scintillation counter	scintillation counter	metadata complete		A device that is used to measure ionizing radiation.	http://en.wikipedia.org/wiki/Scintillation_counter		PERSON: Erik Segerdell						device	measure function				
OBI:0001071	programmable array microscope	programmable array microscope	metadata complete		A confocal microscope that uses a programmable spatial light modulator for generating an arbitrary pattern of conjugate illumination and detection apertures.	Verveer et al, Journal of Microscopy, vol. 189, pt. 3, pp. 192-8		PERSON: Erik Segerdell						confocal microscope	measure function				
OBI:0001072	cryostat	cryostat	metadata complete		A device consisting of a vessel, similar in construction to a vacuum flask, that is used to maintain cold cryogenic temperatures. FIX THIS DEFINITION	http://en.wikipedia.org/wiki/Cryostat		PERSON: Erik Segerdell						device	contain function|mechanical function|cool function				
OBI:0001073	microtome knife maker	microtome knife maker	metadata complete		A glass cutting and breaking device that is used to produce glass knives used in ultramicrotomy.	PERSON: Erik Segerdell		PERSON: Erik Segerdell						device	mechanical function				
OBI:0001074	cryofixation device	cryofixation device	metadata complete		A device that is used for the fixation or stabilization of biological materials as the first step in specimen preparation for electron microscopy.	http://en.wikipedia.org/wiki/Cryofixation		PERSON: Erik Segerdell						device	specimen fixation function				
OBI:0001075	hybridization oven	hybridization oven	metadata complete		A device that creates an appropriate environment for nucleic acid hybridization.	PERSON: Erik Segerdell		PERSON: Erik Segerdell						incubator	contain function|mechanical function				
OBI:0001076	incubator shaker	incubator shaker	metadata complete		An incubating device that provides shaking motion for biomedical applications (e.g., cell cultures).	PERSON: Erik Segerdell		PERSON: Erik Segerdell						device	contain function|environment control function|mechanical function				
OBI:0001077	small-animal image acquisition device	small-animal image acquisition device	metadata complete		A device that is used to image small laboratory animals (e.g., rats and mice) in vivo.	PERSON: Erik Segerdell		PERSON: Erik Segerdell						device	measure function|image acquisition function				
OBI:0001078	infrared image acquisition device	infrared image acquisition device	metadata complete		An image acquisition device that is responsive to an infrared emissive target within a given field of view.	United States Patent 4107530		PERSON: Erik Segerdell						device	measure function|image acquisition function				
OBI:0001079	confocal microscope	confocal microscope	metadata complete		A microscope that is used to increase micrograph contrast and/or reconstruct three-dimensional images by using a spatial pinhole to eliminate out-of-focus light in specimens that are thicker than the focal plane.	http://en.wikipedia.org/wiki/Confocal_microscopy		PERSON: Erik Segerdell						microscope	measure function				
OBI:0001080	patch clamp device	patch clamp device	metadata complete		A device used in electrophysiology that allows the study of single or multiple ion channels in cells.	http://en.wikipedia.org/wiki/Patch_clamp		PERSON: Erik Segerdell						device	measure function				
OBI:0001081	gel imaging system	gel imaging system	metadata complete		A device that is used to acquire images of laboratory gels.	PERSON: Erik Segerdell		PERSON: Erik Segerdell						device	measure function|image acquisition function				
OBI:0001082	protein separation apparatus	protein separation apparatus	metadata complete		A device that is used for the separation of proteins.	PERSON: Erik Segerdell		PERSON: Erik Segerdell						device	material separation function				
OBI:0001083	multichannel electronic pipette	multichannel electronic pipette	metadata complete		A multichannel pipette that can be programmed by the user to aspirate a volume of liquid reagent or sample and dispense the aspirated volume or a series of aliquots in successive dispensing operations.	http://www.faqs.org/patents/app/20090196797		PERSON: Erik Segerdell						multichannel pipette					
OBI:0001084	vitrification apparatus	vitrification apparatus	metadata complete		A device that is used to effect the transition of a substance into a glass.	http://en.wikipedia.org/wiki/Glass_transition		PERSON: Erik Segerdell						device	mechanical function				
OBI:0001085	radiography instrument	radiography instrument	metadata complete		An image acquisition device that uses ionizing electromagnetic radiation such as X-rays to view objects.	http://en.wikipedia.org/wiki/Medical_radiography		PERSON: Erik Segerdell						device	measure function|image acquisition function				
OBI:0001086	radiation measurement device	radiation measurement device	metadata complete		A device that consists of a radiosensitive detector and a means of recording the effects of radiation on the detector.	PERSON: Erik Segerdell		PERSON: Erik Segerdell						device	measure function|record function				
OBI:0001087	lyophilizer	lyophilizer	metadata complete		A device that is used to freeze dry material.	http://en.wikipedia.org/wiki/Freeze_drying		PERSON: Erik Segerdell						device	mechanical function|freeze function				
OBI:0001088	tandem mass spectrometer	tandem mass spectrometer	metadata complete		A mass spectrometer in which ions are subjected to two or more sequential stages of analysis (which may be separated spatially or temporally) according to the quotient mass/charge.	http://goldbook.iupac.org/T06250.html		PERSON: Erik Segerdell						mass spectrometer					
OBI:0001089	microhardness tester	microhardness tester	metadata complete		A hardness testing device that is used in light-optical microscopes.	United States Patent 4611487		PERSON: Erik Segerdell						device	measure function				
OBI:0001090	multimode microplate reader	multimode microplate reader	metadata complete		A microplate reader that can detect multiple types of absorbance, luminescence or fluorescence.	PERSON: Erik Segerdell		PERSON: Erik Segerdell						microplate reader					
OBI:0001091	mechanical balance	mechanical balance	metadata complete		A balance that is used to compare the weights of two bodies, to determine the difference in mass (or weight).	http://www.britannica.com/EBchecked/topic/49765/balance		PERSON: Erik Segerdell						balance					
OBI:0001092	computer cluster	computer cluster	metadata complete		A group of linked computers, working together closely so that in many respects they form a single computer.	http://en.wikipedia.org/wiki/Cluster_(computing)		PERSON: Erik Segerdell						computer					
OBI:0001093	microtome knife sharpener	microtome knife sharpener	metadata complete		A device that is used to sharpen knives used in microtomy.	PERSON: Erik Segerdell		PERSON: Erik Segerdell						device	mechanical function				
OBI:0001094	plate shaker	plate shaker	metadata complete		A device that provides shaking motion for microplates.	PERSON: Erik Segerdell		PERSON: Erik Segerdell						device	mechanical function				
OBI:0001095	coagulation analyzer	coagulation analyzer	metadata complete		A device for automatically analyzing blood coagulation in a clinical laboratory.	United States Patent 5439646		PERSON: Erik Segerdell						device	measure function				
OBI:0001096	laser capture microdissection microscope	laser capture microdissection microscope	metadata complete		A microscope that uses low-energy laser beams and special transfer film to lift single cells from a tissue.	http://www.answers.com/topic/laser-capture-microdissection-microscope-in-medicine		PERSON: Erik Segerdell						microscope	measure function				
OBI:0001097	liquid extraction robot	liquid extraction robot	metadata complete		A liquid handling device that provides automatic liquid extraction.	PERSON: Erik Segerdell		PERSON: Erik Segerdell						liquid handler	mechanical function				
OBI:0001098	ultrasound machine	ultrasound machine	metadata complete		A device that is used to visualize subcutaneous body structures including tendons, muscles, joints, vessels and internal organs.	http://en.wikipedia.org/wiki/Sonography		PERSON: Erik Segerdell						device	measure function|image acquisition function				
OBI:0001099	immunoblot scanner	immunoblot scanner	metadata complete		A device that is used for the imaging of immunoblots.	PERSON: Erik Segerdell		PERSON: Erik Segerdell						device	measure function|image acquisition function				
OBI:0001100	microcentrifuge	microcentrifuge	metadata complete		A type of centrifuge that is designed for small tubes (0.2 ml to 2.0 ml), has a compact design, and has a small footprint.	http://en.wikipedia.org/wiki/Laboratory_centrifuge		PERSON: Erik Segerdell						centrifuge					
OBI:0001101	electronic repeater pipette	electronic repeater pipette	metadata complete		A micropipette that can be programmed by the user to aspirate a volume of liquid reagent or sample and dispense a series of aliquots in successive dispensing operations.	http://www.faqs.org/patents/app/20090196797		PERSON: Erik Segerdell						micropipette					
OBI:0001102	electron paramagnetic resonance spectrometer	electron paramagnetic resonance spectrometer	metadata complete		An spectrophotometer that is used to investigate chemical species that have one or more unpaired electrons, such as organic and inorganic free radicals or inorganic complexes possessing a transition metal ion.	http://en.wikipedia.org/wiki/Electron_paramagnetic_resonance		PERSON: Erik Segerdell						spectrophotometer					
OBI:0001103	rocker	rocker	metadata complete		A device that provides three-dimensional motion for biomedical applications (e.g., gel trays).	PERSON: Erik Segerdell		PERSON: Erik Segerdell						device	mechanical function				
OBI:0001104	analytical balance	analytical balance	metadata complete		A balance with weighing pan(s) inside a transparent enclosure that is used to measure mass to a very high degree of precision and accuracy.	http://en.wikipedia.org/wiki/Weighing_scale		PERSON: Erik Segerdell						balance					
OBI:0001105	scanning force microscope	scanning force microscope	metadata complete		A microscope that forms images of surfaces using a physical probe that scans the specimen.	http://en.wikipedia.org/wiki/Scanning_probe_microscopy		PERSON: Erik Segerdell						microscope	measure function				
OBI:0001106	pulsed-field gel electrophoresis system	pulsed-field gel electrophoresis system	metadata complete		A gel electrophoresis system in which the gel matrix is subjected to an electric field that periodically changes direction.	http://en.wikipedia.org/wiki/Pulsed_field_gel_electrophoresis		PERSON: Erik Segerdell						gel electrophoresis system					
OBI:0001107	tissue embedding station	tissue embedding station	metadata complete		A device that is used to perform paraffin embedding of tissue specimens.	PERSON: Erik Segerdell		PERSON: Erik Segerdell						device	mechanical function				
OBI:0001108	nucleic acid sequencer	nucleic acid sequencer	metadata complete		An device that is used to determine the order of nucleotides in nucleic acid sequences.	PERSON: Erik Segerdell		PERSON: Erik Segerdell						device	measure function				
OBI:0001109	bead array reader	bead array reader	metadata complete		A device that is used to acquire and image bead array data.	PERSON: Erik Segerdell		PERSON: Erik Segerdell						device	measure function|image acquisition function				
OBI:0001110	real-time PCR machine	real-time PCR machine	metadata complete		An PCR instrument that enables both detection and quantification of one or more specific sequences in a DNA sample.	http://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction		PERSON: Erik Segerdell						PCR instrument					
OBI:0001111	paraffin oven	paraffin oven	metadata complete		A device that is used for the warming of paraffin embedding medium.	PERSON: Erik Segerdell		PERSON: Erik Segerdell						device	contain function|heat function|mechanical function				
OBI:0001112	autoclave	autoclave	metadata complete		A device that is used to sterilize equipment and supplies by subjecting them to high pressure steam at 121 C or more, typically for 15 to 20 minutes depending on the size of the load and the contents.	J. Black, Microbiology, Prentice Hall (1993) pg. 334; http://en.wikipedia.org/wiki/Autoclave		PERSON: Erik Segerdell						device	heat function|mechanical function|sterilization function				
OBI:0001113	microplate washer	microplate washer	metadata complete		A device that is used to wash immunoassays in microwell strips and plates with professional accuracy. WHAT IS PROFESSIONAL ACCURACY??	http://www.articlesnatch.com/Article/Microplate-Readers-And-Washers-For-Laboratories/948037		PERSON: Erik Segerdell						device	mechanical function				
OBI:0001114	nucleic acid extraction/purification instrument	nucleic acid extraction/purification instrument	metadata complete		A device that is used to isolate and collect nucleic acids (DNA or RNA) for subsequent molecular analysis.	PERSON: Erik Segerdell		PERSON: Erik Segerdell						device	material separation function				
OBI:0001115	ELISA microplate washer	ELISA microplate washer	metadata complete		A microplate washer that is used for enzyme-linked immunosorbent assays (ELISA).	PERSON: Erik Segerdell		PERSON: Erik Segerdell						microplate washer					
OBI:0001116	vacuum manifold	vacuum manifold	metadata complete		A device that is used for the vacuum-driven processing of multiwell strips or plates, or spin columns. IS THIS AN INSTRUMENT? IS THE DEFINTION CORRECT - TO DISTRIBUTE PRESSURE EVENLY.	PERSON: Erik Segerdell		PERSON: Erik Segerdell						device	mechanical function				
OBI:0001117	DNA extraction/purification instrument	DNA extraction/purification instrument	metadata complete		A device that is used to isolate and collect DNA for subsequent molecular analysis.	http://en.wikipedia.org/wiki/DNA_extraction		PERSON: Erik Segerdell						nucleic acid extraction/purification instrument					
OBI:0001118	multichannel pipette	multichannel pipette	metadata complete		A pipetting system that has a plurality of tip fittings and is used for multi-well plate applications.	PERSON: Erik Segerdell		PERSON: Erik Segerdell						device	mechanical function|measure function				
OBI:0001119	cell harvester	cell harvester	metadata complete		A device that is used to harvest cells from microplates and deposit samples on a filter mat. NOT AN INSTRUMENT?	PERSON: Erik Segerdell		PERSON: Erik Segerdell						device	cell transfer function				
OBI:0001120	portable fluorometer	portable fluorometer	metadata complete		A compact fluorometer that can be carried or moved with ease.	PERSON: Erik Segerdell		PERSON: Erik Segerdell						fluorometer					
OBI:0001121	gel electrophoresis system	gel electrophoresis system	metadata complete		An electrophoresis system in which an electric field is applied to a gel matrix	https://en.wikipedia.org/wiki/Gel_electrophoresis		PERSON: Erik Segerdell						electrophoresis system					
OBI:0001122	diffractometer	diffractometer	metadata complete		A measurement device for analyzing the structure of a material from the scattering pattern produced when a beam of radiation or particles (e.g. X rays or neutrons) interacts with it.	http://en.wikipedia.org/wiki/Diffractometer		PERSON: Erik Segerdell						device	measure function				
OBI:0001123	microdissection instrument	microdissection instrument	metadata complete		A device that is used for the dissection of tissues under magnification.	http://medical-dictionary.thefreedictionary.com/microdissection		PERSON: Erik Segerdell						device	mechanical function				
OBI:0001124	micropipette puller	micropipette puller	metadata complete		A device that is used to fabricate glass micropipettes.	http://en.wikipedia.org/wiki/Micropipette		PERSON: Erik Segerdell						device	mechanical function				
OBI:0001125	laser scanning confocal microscope	laser scanning confocal microscope	metadata complete		A confocal microscope that obtains high-resolution optical images with depth selectivity, in which a laser beam passes through a light source aperture and then is focused by an objective lens into a small (ideally diffraction limited) focal volume within or on the surface of a specimen.	http://en.wikipedia.org/wiki/Confocal_laser_scanning_microscopy		PERSON: Erik Segerdell						confocal microscope	measure function				
OBI:0001126	digital microscope	digital microscope	metadata complete		A microscope that uses optics and a charge-coupled device (CCD) camera to output a digital image to a monitor.	http://en.wikipedia.org/wiki/Digital_microscope		PERSON: Erik Segerdell						microscope	measure function				
OBI:0001127	freeze substitution system	freeze substitution system	metadata complete		A device or system for dehydrating and then chemically fixing electron microscopy samples at low temperatures in preparation for various treatments including embedding in resins.	doi:10.1017/S143192760707866X		PERSON: Erik Segerdell						device	mechanical function|freeze function				
OBI:0001128	micropipette	micropipette	metadata complete		A microinjection device that is used to measure very small volumes of liquids.	http://www.answers.com/topic/micropipette		PERSON: Erik Segerdell						device	mechanical function|measure function				
OBI:0001129	voltage clamp device	voltage clamp device	metadata complete		A device that is used to measure the ion currents across the membrane of excitable cells, such as neurons, while holding the membrane voltage at a set level.	http://en.wikipedia.org/wiki/Voltage_clamp		PERSON: Erik Segerdell						device	measure function				
OBI:0001130	vacuum oven	vacuum oven	metadata complete		A device that heats materials in a vacuum.	PERSON: Erik Segerdell		PERSON: Erik Segerdell						device	contain function|heat function|mechanical function				
OBI:0001131	slide warmer	slide warmer	metadata complete		A device that is used to heat microscope slides.	PERSON: Erik Segerdell		PERSON: Erik Segerdell						device	heat function				
OBI:0001132	capillary electrophoresis instrument	capillary electrophoresis instrument	metadata complete		An electrophoresis system that is used to separate ionic species by their charge and frictional forces and mass.	http://en.wikipedia.org/wiki/Capillary_electrophoresis		PERSON: Erik Segerdell						electrophoresis system					
OBI:0001133	denaturing high-performance liquid chromatography instrument	denaturing high-performance liquid chromatography instrument	metadata complete		A high performance liquid chromatography instrument that employs temperature-dependent separation of DNA containing mismatched base pairs from PCR-amplified DNA fragments for chromatographic mutation analysis.	doi:10.1385/1-59259-850-1:173		PERSON: Erik Segerdell						device	material separation function				
OBI:0001134	agarose gel electrophoresis system	agarose gel electrophoresis system	metadata complete		A gel electrophoresis system that is used to separate DNA or RNA molecules by size, achieved by moving negatively charged nucleic acid molecules through an agarose matrix with an electric field.	http://en.wikipedia.org/wiki/Agarose_gel_electrophoresis		PERSON: Erik Segerdell						gel electrophoresis system					
OBI:0001135	balance	balance	metadata complete		A measuring instrument that is used to determine the weight or mass of an object.	http://en.wikipedia.org/wiki/Weighing_scale		PERSON: Erik Segerdell						device	mechanical function|measure function				
OBI:0001136	surface plasmon resonance instrument	surface plasmon resonance instrument	metadata complete		A tool for measuring adsorption of material onto planar metal (typically gold and silver) surfaces or onto the surface of metal nanoparticles.	http://en.wikipedia.org/wiki/Surface_plasmon_resonance		PERSON: Erik Segerdell						device	measure function				
OBI:0001137	protein sequencer	protein sequencer	metadata complete		An device that is used to determine the order of amino acids in protein sequences.	PERSON: Erik Segerdell		PERSON: Erik Segerdell						device	measure function				
OBI:0001138	X-ray source	X-ray source	metadata complete	x-ray generator	A device that is used to generate X-rays.	http://en.wikipedia.org/wiki/X-ray_generator		PERSON: Erik Segerdell						device	excitation function				
OBI:0001139	liquid chromatography instrument	liquid chromatography instrument	metadata complete		A chromatography device that dissolves a mixture in liquid mobile phase to separate the analyte to be measured from other molecules in the mixture and allows it to be isolated	PERSON: Matthew Brush		PERSON: Matthew Brush						chromatography device					
OBI:0001204	SNP microarray	SNP microarray	metadata complete		A DNA microarray used to detect polymorphisms in DNA samples	EFO_0002703 SNP array		Person: Helen Parkinson						DNA microarray					
OBI:0001307	tiling microarray	tiling microarray	metadata complete	genome tiling array	A DNA microarray which has short fragments of nucleic acid immobilized on a substrate. These are designed to cover the whole genome of the target species. Tiling arrays are used to determine genome binding in ChIP assays or to identify transcribed regions.	EFO_0002704: tiling array		Person: Helen Parkinson						DNA microarray					
OBI:0001865	assay array		metadata complete		A device made to be used in an analyte assay for immobilization of substances that bind the analyte at regular spatial positions on a surface.	Penn Group		PERSON: Chris Stoeckert, Jie Zheng, Alan Ruttenberg						device	solid support function				
OBI:0001869	Illumina BeadChip		metadata complete		An array that consists of 3-micron silica beads that self assemble in microwells on either of two materials: fiber optic bundles or planar silica slides.	http://www.illumina.com/technology/beadarray_technology.ilmn		PERSON: Chris Stoeckert, Jie Zheng, Alan Ruttenberg, Venkat Malladi						assay array				Illumina	
OBI:0001870	Illumina methylation BeadChip		metadata complete		A BeadChip made for an analyte assay that generates information about DNA methylation.	Penn Group		PERSON: Chris Stoeckert, Jie Zheng, Alan Ruttenberg						Illumina BeadChip					('bearer of' some (function and ('realized in' only (assay and (has_specified_output some ('measurement datum' and ('is about' some (deoxyribonucleotide and ('has part' some 'methyl group')))))))))
OBI:0001871	LSRFortessa X-20		metadata complete		A flow cytometer analyzer manifactured by Becton ans Dickinson. Can be configured with up to 5 lasers, 488nm, 532 or 561 nm, 640 nm, 405 nm, 355 nm for measuring up to 20 parameters simultaneously.	http://www.bdbiosciences.com/instruments/lsrx20/index.jsp?WT.srch=1&gclid=CJjJ8JTR5LoCFXBo7AodZycAbg		Anna Maria Masci						flow cytometer analyzer				Becton Dickinson (BD Biosciences)	
OBI:0001971	Ion 316 Chip v2	Ion 316 Chip v2		Ion PGM 316 Chip|Ion 316 Chip|Ion PGM 316 Chip v2	An ion semiconductor chip manufactured by Life Technologies which detects polymerase-driven base incorporation to translate into digital form. The 316 chip is compatible with the Ion Torrent PGM and has a run time of: 3.0 hours for 200 bp reads with an output of 30-50 Mb, 4.9 hours for 400 bp reads with an output of 60 Mb-1 Gb.	http://www.lifetechnologies.com/us/en/home/life-science/sequencing/next-generation-sequencing/ion-torrent-next-generation-sequencing-workflow/ion-torrent-next-generation-sequencing-run-sequence/ion-pgm-ion-proton-system-chips.html		PERSON: Sagar Jain	Issue Tracker #774 https://sourceforge.net/p/obi/obi-terms/774/					ion semiconductor chip					
OBI:0001972	Ion 318 Chip v2	Ion 318 Chip v2		Ion 318 Chip|Ion PGM 318 Chip|Ion PGM 318 Chip v2	An ion semiconductor chip manufactured by Life Technologies which detects polymerase-driven base incorporation to translate into digital form. The 318 chip is compatible with the Ion Torrent PGM and has a run time of: 4.4 hours for 200 bp reads with an output of 60 Mb-1 Gb, 7.3 hours for 400 bp reads with an output of 1.2 Gb-2 Gb.	http://www.lifetechnologies.com/us/en/home/life-science/sequencing/next-generation-sequencing/ion-torrent-next-generation-sequencing-workflow/ion-torrent-next-generation-sequencing-run-sequence/ion-pgm-ion-proton-system-chips.html		PERSON: Sagar Jain	Issue Tracker #775 https://sourceforge.net/p/obi/obi-terms/775/					ion semiconductor chip					
OBI:0001973	ion semiconductor chip	ion semiconductor chip		ion chip|ion semiconductor|ion integrated circuit	An ion detector that is organized as an electronic circuit whose components, such as transistors and resistors, are etched or deposited on a single slice of semiconductor material to produce a chip. The specific chip detects ion charge induced when an ion passes by or hits a surface.	http://www.thefreedictionary.com/Semiconductor+chip		PERSON: Sagar Jain	Issue Tracker: #776 https://sourceforge.net/p/obi/obi-terms/776/					ion detector					
OBI:0001974	Ion 314 Chip v2	Ion 314 Chip v2		Ion PGM 314 Chip|Ion 314 Chip|Ion PGM 314 Chip v2	An ion semiconductor chip manufactured by Life Technologies which detects polymerase-driven base incorporation to translate into digital form. The 314 chip is compatible with the Ion Torrent PGM and has a run time of: 2.3 hours for 200 bp reads with an output of 30-50 Mb, 3.7 hours for 400 bp reads with an output of 60-100 Mb.	http://www.lifetechnologies.com/us/en/home/life-science/sequencing/next-generation-sequencing/ion-torrent-next-generation-sequencing-workflow/ion-torrent-next-generation-sequencing-run-sequence/ion-pgm-ion-proton-system-chips.html		PERSON: Sagar Jain	Issue Tracker #766 https://sourceforge.net/p/obi/obi-terms/766/					ion semiconductor chip					
OBI:0002000	Genome Analyzer IIx		metadata complete	Illumina GA IIx|Illumina Genome Analyzer IIx	An Illumina Genome Analyzer II which is manufactured by the Illumina corporation. It supports sequencing of single, long or short insert paired end clone libraries relying on sequencing by synthesis technology. The Genome Analyzer IIx is the most widely adopted next-generation sequencing platform and proven and published across the broadest range of research applications.	ENCODE group	Gravina, Michael T., Jenny H. Lin, and Stuart S. Levine. ""Lane-by-lane sequencing using Illumina's Genome Analyzer II."" BioTechniques 54.5 (2013): 265-269. PMID: 23662897	PERSON: Venkat Malladi, Chris Stoeckert, Jie Zheng, Alan Ruttenberg						Illumina Genome Analyzer II				Illumina	
OBI:0002001	Illumina HiSeq 2000		metadata complete	HiSeq 2000	A DNA sequencer which is manufactured by the Illumina corporation, with two flow cells and a throughput of up to 55 Gb per day. Built upon sequencing by synthesis technology, the machine is optimized for generation of data for multiple samples in a single run.	http://res.illumina.com/documents/products/datasheets/datasheet_hiseq_systems.pdf	Wang J, Qi J, Zhao H, He S, Zhang Y, Wei S, Zhao F. Metagenomic sequencing reveals microbiota and its functional potential associated with periodontal disease. Sci Rep. 2013 May;3:1843. PMID:23673380	PERSON: Venkat Malladi, Chris Stoeckert, Jie Zheng						DNA sequencer				Illumina	
OBI:0002002	Illumina HiSeq 2500		metadata complete	HiSeq 2500	A DNA sequencer which is manufactured by the Illumina corporation, with two flow cells and a throughput of up to 160 Gb per day. Built upon sequencing by synthesis technology, the machine is optimized for generation of data for batching multiple samples or rapid results on a few samples.	http://res.illumina.com/documents/products/datasheets/datasheet_hiseq2500.pdf	Spaethling, Jennifer M., and James H. Eberwine. ""Single-cell transcriptomics for drug target discovery."" Current opinion in pharmacology (2013). pmid:23725882	PERSON: Venkat Malladi, Chris Stoeckert, Jie Zheng, Alan Ruttenberg						DNA sequencer				Illumina	
OBI:0002003	MiSeq		metadata complete	Illumina MiSeq	A DNA sequencer which is manufactured by the Illumina corporation. Built upon sequencing by synthesis technology, the machine provides an end-to-end solution (cluster generation, amplification, sequencing, and data analysis) in a single machine.	http://res.illumina.com/documents/products/datasheets/datasheet_miseq.pdf	Rutvisuttinunt W, Chinnawirotpisan P, Simasathien S, Shrestha SK, Yoon IK, Klungthong C, Fernandez S. Simultaneous and complete genome sequencing of influenza A and B with high coverage by Illumina MiSeq Platform. J Virol Methods. 2013 Nov;193(2):394-404. [PMID:23856301]	PERSON: Venkat Malladi, Chris Stoeckert, Jie Zheng						DNA sequencer				Illumina	
OBI:0002004	Methylation 450K BeadChip		metadata complete	Illumina Infinium Human Methylation 450K BeadChip	A methylation BeadChip which is manufactured by the Illumina corporation. Built upon BeadChip tehcnology, the array interrogates ~ 485,000 methylation sites per sample at single-nucleotide resolution.	http://www.illumina.com/products/methylation_450_beadchip_kits.ilmn	Naumov, Vladimir A., et al. ""Genome-scale analysis of DNA methylation in colorectal cancer using Infinium HumanMethylation450 BeadChips."" Epigenetics 8.9 (2013): 0-1. PMID: 23867710	PERSON: Venkat Malladi, Chris Stoeckert, Jie Zheng, Alan Ruttenberg						Illumina methylation BeadChip					
OBI:0002005	Methylation 27K BeadChip		metadata complete	Illumina Infinium Human Methylation 27K BeadChip	A methylation BeadChip which is manufactured by the Illumina corporation. Built upon BeadChip tehcnology, the array interrogates ~ 27,000 CpG sites per sample at single-nucleotide resolution.	http://res.illumina.com/documents/products/datasheets/datasheet_dna_methylation_analysis.pdf	Polidoro, Silvia, et al. ""Effects of bisphosphonate treatment on DNA methylation in osteonecrosis of the jaw."" Mutation Research/Genetic Toxicology and Environmental Mutagenesis 757.2 (2013): 104-113. PMID: 23892139	PERSON: Venkat Malladi, Chris Stoeckert, Jie Zheng, Alan Ruttenberg						Illumina methylation BeadChip					
OBI:0002006	1M-Duo Infinium HD BeadChip		metadata complete	Illumina Human 1M-Duo Infinium HD BeadChip	A BeadChip which is manufactured by the Illumina corporation. Built upon BeadChip tehcnology, the array integrates ~ 1 million markers per sample for genotyping, and copy number variation (CNV) and Cytogenetic analysis.	http://www.illumina.com/technology/infinium_hd_assay.ilmn	Edwards, Todd L., et al. ""Genome-Wide Association Study Confirms SNPs in SNCA and the MAPT Region as Common Risk Factors for Parkinson Disease."" Annals of human genetics 74.2 (2010): 97-109. PMID: 20070850	PERSON: Venkat Malladi, Chris Stoeckert, Jie Zheng, Alan Ruttenberg						Illumina BeadChip					
OBI:0002007	SOLiD 3 Plus System		metadata complete	Applied Biosystems SOLiD 3 Plus System	A DNA sequencer which is manufacted by the Applied Biosystems corporation. Built upon SOLiD sequencing technology, the machine generates greater than 1 billion mappable reads per run.	http://www3.appliedbiosystems.com/cms/groups/mcb_marketing/documents/generaldocuments/cms_072050.pdf	Vissers, Lisenka ELM, et al. ""A de novo paradigm for mental retardation."" Nature genetics 42.12 (2010): 1109-1112. PMID:21076407	PERSON: Venkat Malladi, Chris Stoeckert, Jie Zheng, Alan Ruttenberg						AB SOLiD System				Applied Biosystems	
OBI:0002008	Mouse 385K Whole Genome CGH Tiling Array		metadata complete	Nimblegen Mouse 385K Whole Genome CGH Tiling Array	A tiling array which is manufactured by the Nimblegen corporation. Built to analyze DNA sequence copy number by comparative genomic hybridization for mouse DNA against 385,000 features.	http://www.nimblegen.com/downloads/support/05434483001_NG_CGHLOH_UGuide_v9p1.pdf	Miller, Becky Akiko. Detection and biological assessment of genome structural variation in Plasmodium falciparum. Diss. University of Notre Dame, 2012.  http://etd.nd.edu/ETD-db/theses/available/etd-04182012-114744/	PERSON: Venkat Malladi, Chris Stoeckert, Jie Zheng, Alan Ruttenberg						tiling microarray				Nimblegen	
OBI:0002009	Mouse 3x720K Whole Genome CGH Tiling Array		metadata complete	Nimblegen Mouse 3x720K Whole Genome CGH Tiling Array	A tiling array which is manufactured by the Nimblegen corporation. Built to analyze DNA sequence copy number by comparative genomic hybridization for mouse DNA against 3x720,000 features.	http://www.nimblegen.com/downloads/support/05434483001_NG_CGHLOH_UGuide_v9p1.pdf	Wartman, Lukas D., et al. ""Sequencing a mouse acute promyelocytic leukemia genome reveals genetic events relevant for disease progression."" The Journal of clinical investigation 121.4 (2011): 1445. PMID:21436584	PERSON: Venkat Malladi, Chris Stoeckert, Jie Zheng, Alan Ruttenberg						tiling microarray				Nimblegen	
OBI:0002010	Human 3x720K Whole Genome CGH Tiling Array		metadata complete	Nimblegen Human 3x720K Whole Genome CGH Tiling Array	A tiling array which is manufactured by the Nimblegen corporation. Built to analyze DNA sequence copy number by comparative genomic hybridization for human DNA against 3x720,000 features.	http://www.nimblegen.com/downloads/support/05434483001_NG_CGHLOH_UGuide_v9p1.pdf	Deletion in Xp22.11: PTCHD1 is a candidate gene for X-linked intellectual disability with or without autism PMID:21091464	PERSON: Venkat Malladi, Chris Stoeckert, Jie Zheng, Alan Ruttenberg						tiling microarray				Nimblegen	
OBI:0002011	Human 2.1M Whole-Genome CGH Tiling Array v2.0		metadata complete	Nimblegen Human 2.1M Whole-Genome CGH Tiling Array v2.0	A tiling array which is manufactured by the Nimblegen corporation. Built to analyze DNA sequence copy number by comparative genomic hybridization for human DNA against 2.1 million features.	http://www.nimblegen.com/downloads/support/05434483001_NG_CGHLOH_UGuide_v9p1.pdf	Filges, Isabel, et al. ""Reduced expression by SETBP1 haploinsufficiency causes developmental and expressive language delay indicating a phenotype distinct from Schinzel–Giedion syndrome."" Journal of medical genetics 48.2 (2011): 117-122. PMID:21037274	PERSON: Venkat Malladi, Chris Stoeckert, Jie Zheng, Alan Ruttenberg						tiling microarray				Nimblegen	
OBI:0002012	PacBio RS II		metadata complete	Pacific Biosciences RS II	A DNA sequencer which is manufactured by the Pacific Biosciences corporation. Built upon single molecule real-time sequencing technology, the machine is optimized for generation with long reads and high consensus accuracy.	http://www.pacificbiosciences.com/products/	Spaethling, Jennifer M., and James H. Eberwine. ""Single-cell transcriptomics for drug target discovery."" Current opinion in pharmacology (2013). pmid:23725882	PERSON: Venkat Malladi, Chris Stoeckert, Jie Zheng, Alan Ruttenberg						DNA sequencer				Pacific Biosciences	
OBI:0002013	nCounter Human miRNA Expression array		metadata complete		A human array which is manufacutred by NanoString Technologies. Built upon color-coded molecular barcodes technology, the array profiles miRNA with increased specificity and sensitivty than microarrays.	https://www.nanostring.com/products/mirna-assays/mirna-panels	Kolbert, Christopher P., et al. ""Multi-platform analysis of microRNA expression measurements in RNA from fresh frozen and FFPE tissues."" PloS one 8.1 (2013): e52517. PMID:23382819	PERSON: Venkat Malladi, Chris Stoeckert, Jie Zheng, Alan Ruttenberg.  Mark A. Miller removed ""V2"" per https://github.com/obi-ontology/obi/issues/831 on 20180511.						assay array				NanoString Technologies	
OBI:0002021	NextSeq 500			Illumina NextSeq 500	A DNA sequencer which is a desktop sequencer ideal for smaller-scale studies manufactured by the Illumina corporation. It supports sequencing of single, long or short insert paired end clone libraries relying on sequencing by synthesis technology.	http://systems.illumina.com/systems/nextseq-sequencer.html		Person: Venkat Malladi, Chris Stoeckert, Jie Zheng						DNA sequencer				Illumina	
OBI:0002022	Illumina HiSeq 1000			HiSeq 1000	A DNA sequencer which is manufactured by the Illumina corporation, with a single flow cell and a throughput of up to 35 Gb per day. It supports sequencing of single, long or short insert paired end clone libraries relying on sequencing by synthesis technology.	http://res.illumina.com/documents/products/datasheets/datasheet_hiseq_systems.pdf		Person: Venkat Malladi, Chris Stoeckert, Jie Zheng						DNA sequencer				Illumina	
OBI:0002023	Human Genome U133 Plus 2.0 tiling array			HG-U133 Plus 2|Affymetrix HT Human Genome U133 Plus 2 Array Plate Set|HG-U133 Plus 2 array	A tiling array which is  a comprehensive whole human genome expression array manufactured by the Affymetrix corporation. Built to analyze DNA sequence copy number by comparative genomic hybridization for human DNA against 47,000 transcripts and variants.	http://www.affymetrix.com/estore/esearch/search.jsp?pd=131455&N=4294967292		Person: Venkat Malladi, Chris Stoeckert, Jie Zheng						tiling microarray				Affymetrix	
OBI:0002024	SOLiD 4 System			Applied Biosystems SOLiD 4 System|SOLiD 4	An AB SOLid System which is manufacted by the Applied Biosystems corporation. Built upon SOLiD sequencing technology, the machine generates greater than 1 billion mappable reads per run.	http://www.appliedbiosystems.com/absite/us/en/home/applications-technologies/solid-next-generation-sequencing/next-generation-systems/solid-4-system.html?CID=FL-091411_solid4		Person: Venkat Malladi, Chris Stoeckert, Jie Zheng						AB SOLiD System				Applied Biosystems	
OBI:0002025	Human Exon 1.0 ST tilling array			Affymetrix Human Exon 1.0 St Array|Human Exon 1.0|Human Exon 1.0 ST Array	A tiling microarray which is manufactured by the Affymetrix corporation. Built to analyze 3' DNA sequence copy number by comparative genomic hybridization for human DNA against 28,000 genes. It  can be used for gene expression and alternative splicing assay	http://www.affymetrix.com/catalog/131453/AFFY/Human+Gene+ST+Arrays#1_1		Person: Venkat Malladi, Chris Stoeckert, Jie Zheng						tiling microarray				Affymetrix	
OBI:0002026	Human Genome U133 tiling array			HG-U133|Affymetrix HT Human Genome U133 Array Plate Set|HG-U133 array	A tiling array which is manufactured by the Affymetrix corporation. Built to analyze DNA sequence copy number by comparative genomic hybridization for human DNA against 39,000 transcripts and variants.	http://www.affymetrix.com/estore/esearch/search.jsp?pd=131441&N=4294967292		Person: Venkat Malladi, Chris Stoeckert, Jie Zheng						tiling microarray				Affymetrix	
OBI:0002027	Genome Analyzer IIe			Illumina GA IIe|Illumina Genome Analyzer IIe	An Illumina Genome Analyzer II which is manufactured by the Illumina corporation. It supports sequencing of single, long or short insert paired end clone libraries relying on sequencing by synthesis technology. The Genome Analyzer IIe makes industry-leading next-generation sequencing technology accessible to more laboratories.	http://res.illumina.com/documents/products/datasheets/datasheet_genome_analyzer_iie.pdf		Person: Venkat Malladi, Chris Stoeckert, Jie Zheng						Illumina Genome Analyzer II				Illumina	
OBI:0002046	surface plasmon resonance sensor chip	surface plasmon resonance sensor chip	pending final vetting	sensor chip|biosensor chip|SPR sensor chip	A device that is used as a binding surface for ligand during a surface plasmon resonance assay, consisting of a glass plate to which a metal film is attached	OBI	ProteOn GLC Sensor Chip #176-5011	Anna Maria Masci						device	solid support function		surface plasmon resonance instrument		
OBI:0002048	Illumina HiSeq 3000		metadata complete	HiSeq 3000	A DNA sequencer manufactured by Illumina corporation, with a single flow cell and a throughput of more than 200 Gb per day.	http://www.illumina.com/systems/hiseq-3000-4000.html		PERSON: Sagar Jain, Richard Scheuermann						DNA sequencer				Illumina	
OBI:0002049	Illumina HiSeq 4000		metadata complete	HiSeq 4000	A DNA sequencer manufactured by Illumina corporation, with two flow cell and a throughput of more than 400 Gb per day.	http://www.illumina.com/systems/hiseq-3000-4000.html		PERSON: Sagar Jain, Richard Scheuermann						DNA sequencer				Illumina	
OBI:0002088	specimen container	specimen container	ready for release		A container with the function of containing a specimen.	Duke Biobank, OBIB	COPAN eSwab, CPT vacutainer, PAXgene Blood DNA tube	Chris Stoeckert	For details see tracker item: http://sourceforge.net/p/obi/obi-terms/792/				equivalent	container	containing a specimen function				
OBI:0002089	physical store	physical store	ready for release		A container with an environmental control function.	Duke Biobank, OBIB	a freezer. a humidity controlled box.	Chris Stoeckert	For details see tracker item: http://sourceforge.net/p/obi/obi-terms/793/				equivalent	container	environment control function				
OBI:0002109	Human 6x630K CGH Whole Genome Tiling Array		ready for release	NimbleGen Human 6x630K CGH Whole Genome Tiling Array	A tiling array which is manufactured by the Nimblegen corporation to analyze DNA sequence copy number by comparative genomic hybridization for human DNA against 6x630,000 features.	http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?token=snolquwezzwdxuj&acc=GPL18318		Jason Hilton, Chris Stoeckert, Bjoern Peters, OBI-group	Term request: https://sourceforge.net/p/obi/obi-terms/791/					tiling microarray				Nimblegen	
OBI:0002128	Illumina Genome Analyzer	Illumina Genome Analyzer	pending final vetting	Illumina Genome Analyzer I	A DNA sequencer manufactured by Solexa as one of its first sequencer lines, launched in 2006, and capable of sequencing 1 gigabase (Gb) of data in a single run.	http://www.illumina.com/technology/next-generation-sequencing/solexa-technology.html		Person: Chris Stoeckert, Jason Hilton						DNA sequencer				Illumina	
OBI:0002129	Illumina HiSeq X Ten	Illumina HiSeq X Ten	pending final vetting	HiSeq X Ten	A DNA sequencer that consists of a set of 10 HiSeq X Sequencing Systems.	http://www.illumina.com/systems/hiseq-x-sequencing-system/system.html		Person: Chris Stoeckert, Jason Hilton, Sagar Jain, Richard Scheuermann						DNA sequencer				Illumina	
OBI:0002130	Illumina Infinium Omni5Exome-4 Kit	Illumina Infinium Omni5Exome-4 Kit	pending final vetting		An Illumina BeadChip which is an array that interrogates over 4.3 million whole-genome variants for genotyping and copy number variation.	http://www.illumina.com/products/by-type/microarray-kits/infinium-omni5-exome.html		Person: Chris Stoeckert, Jason Hilton						Illumina BeadChip					
OBI:0002131	Illumina Infinium MethylationEPIC v1.0 BeadChip	Illumina Infinium MethylationEPIC v1.0 BeadChip	pending final vetting		An Illumina methylation BeadChip which is an array that interrogates ~ 850,000 methylation sites per sample at single-nucleotide resolution.	http://www.illumina.com/content/dam/illumina-marketing/documents/products/datasheets/humanmethylationepic-data-sheet-1070-2015-008.pdf		Person: Chris Stoeckert, Jason Hilton						Illumina methylation BeadChip					
OBI:0002192	Leica Peloris rapid tissue processor	Leica Peloris rapid tissue processor	ready for release		An automatic tissue processor that is a dual retort tissue processor manufactured by the Leica company to provide fast, high quality tissue processing for histology laboratories.	http://drp8p5tqcb2p5.cloudfront.net/fileadmin/downloads_lbs/Leica%20PELORIS/User%20Manuals/Leica_Peloris_manual_EN.pdf		Chris Stoeckert, Helena Ellis			NCI BBRB			automatic tissue processor					
OBI:0002194	Microm Ergostar HM200	Microm Ergostar HM200	ready for release		A microtome that is manufactured by Microm and uses a vertical cutting stroke common to all rotary microtomes engaged by a horizontal sliding movement. An operating arm replaces the handwheel and is attached to both sides of the instrument for greater convenience to permit control of sectioning from the left or right.	http://www.ultra-medical.com/Microm-Ergostar-HM200-Microtome/en		Chris Stoeckert, Helena Ellis			NCI BBRB			microtome					
OBI:0002195	microtome blade	microtome blade	ready for release		A device that is the part of a microtome used to slice specimens to a desired thickness.	https://en.wikipedia.org/wiki/Microtome		Chris Stoeckert, Helena Ellis			NCI BBRB			device					
OBI:0002196	Sakura Low profile Accu-Edge microtome blade	Sakura Low profile Accu-Edge microtome blade	ready for release		A microtome blade that is manufactured by Feather and is disposable. The ultra-sharp blades section specimens without striations, distortion or chattering.	http://www.sakura.eu/Our-products/item/8/Microtomy/29/Accu-Edge-Disposable-Microtome-Blades		Chris Stoeckert, Helena Ellis			NCI BBRB			microtome blade					
OBI:0002487	microraft	microraft			A material separation device also commerically known as Isoraft, that is used to isolate single cells.	https://en.wikipedia.org/wiki/Microrafts		Stephen A. Fisher, Junhyong Kim, Dan Berrios						material separation device					
OBI:0002488	pipette	pipette			A device that is a laboratory tool commonly used in chemistry, biology and medicine to transport a measured volume of liquid, often as a media dispenser.	https://en.wikipedia.org/wiki/Pipette		Stephen A. Fisher, Junhyong Kim, Dan Berrios						device					
OBI:0002570	nCounter Mouse miRNA Expression array		requires discussion		A mouse array which is manufacutred by NanoString Technologies. Built upon color-coded molecular barcodes technology, the array profiles miRNA with increased specificity and sensitivty than microarrays.	https://www.nanostring.com/products/mirna-assays/mirna-panels	Kolbert, Christopher P., et al. ""Multi-platform analysis of microRNA expression measurements in RNA from fresh frozen and FFPE tissues."" PloS one 8.1 (2013): e52517. PMID:23382819	PERSON: Venkat Malladi, Chris Stoeckert, Jie Zheng, Alan Ruttenberg.  Mark A. Miller added based on http://purl.obolibrary.org/obo/OBI_0002013						assay array				NanoString Technologies	
OBI:0002586	digital acquisition card	digital acquisition card		DAQ device|digital acquisition and digital generation card	The digital acquisition card acts as the interface between the computer and a measurement device via the computer bus. It converts the signal generated by a measurement device (output from device) to a digital signal via an analog-to-digital converter, ADC. It also converts a digital signal to an analog signal via a digital-to-analog converter, DAC. This analog signal (e.g., stimulus) is fed to a measurement device (input to device).	Brenda Farrell, bfarrell@bcm.edu		Mark A. Miller						device	signal conversion function				
OBI:0002630	Illumina NovaSeq 6000	Illumina NovaSeq 6000		NovaSeq 6000	A DNA sequencer which is manufactured by the Illumina corporation, with two flow cells and an output of up to 6000 Gb (32-40 B reads per run). The sequencer utilizes synthesis technology and patterned flow cells to optimize throughput and even spacing of sequencing clusters.	http://www.illumina.com/systems/sequencing-platforms/novaseq.html	Genomic DNA of Xenophilus sp. E41 was extracted and sequenced using an Illumina NovaSeq 6000 system.	Dan Berrios						DNA sequencer				Illumina	
OBI:0002632	PacBio Sequel	PacBio Sequel		Pacific BioSciences Sequel	A DNA sequencer built upon single molecule real-time sequencing technology, optimized for generation with long reads and high consensus accuracy, and manufactured by the Pacific Biosciences corporation	http://www.pacb.com/products-and-services/pacbio-systems/sequel/	The cDNAs were sequenced on the PacBio Sequel platform.	Bonita Lam|Dan Berrios						DNA sequencer					
OBI:0002633	PacBio Sequel II	PacBio Sequel II		Pacific BioSciences Sequel II	A DNA sequencer built upon single molecule real-time sequencing technology, optimized for generation of highly accurate (""HiFi"") long reads, and which is manufactured by the Pacific Biosciences corporation.	http://www.pacb.com/products-and-services/pacbio-systems/sequel/	The cDNAs were sequenced on the PacBio Sequel II platform.	Bonita Lam|Dan Berrios						DNA sequencer					
OBI:0002679	vacuum-assisted biopsy needle	vacuum-assisted biopsy needle	requires discussion		A core biopsy needle integrated with a vacuum system which facilitates the collection of specimen material.	https://www.researchgate.net/publication/330227873	Vacuum-assisted biopsy needles come in two varieties: a non-tethered design and a needle design requiring tethering cable to a vacuum source.	Damion Dooley				https://github.com/obi-ontology/obi/issues/1163		needle	transfer function				
OBI:0002681	glass bottle	glass bottle	metadata complete		A container with a narrow neck that is made of glass.	VEuPathDB		VEuPathDB			VEuPathDB	https://github.com/obi-ontology/obi/issues/1117		container	contain function				
OBI:0002682	glass bottle coated with insecticides	glass bottle coated with insecticides	metadata complete		A glass bottle that coated with material designed to control insects.	VEuPathDB		VEuPathDB			VEuPathDB	https://github.com/obi-ontology/obi/issues/1117		glass bottle	contain function				
OBI:0002750	Oxford Nanopore MinION	Oxford Nanopore MinION	metadata complete	ONT MinION, MinION	A portable DNA sequencer which is manufactured by the Oxford Nanopore Technologies corporation, that uses consumable flow cells producing up to 30 Gb of DNA sequence data per flow cell. The sequencer produces real-time results and utilizes nanopore technology with up to 512 nanopore channels in the sensor array.	https://nanoporetech.com/products/minion	Approaches to Whole Mitochondrial Genome Sequencing on the Oxford Nanopore MinION	PERSON: Bonita Lam						DNA sequencer				Oxford Nanopore Technologies	
OBI:0002751	Oxford Nanopore GridION Mk1	Oxford Nanopore GridION Mk1	metadata complete	Oxford Nanopore GridION X5, GridION Mk1	A DNA sequencer that is manufactured by the Oxford Nanopore Technologies corporation, that can run and analyze up to five individual flow cells producing up to 150 Gb of data per run. The sequencer produces real-time results and utilizes nanopore technology with the option of running the flow cells concurrently or individually.	https://nanoporetech.com/products/gridion	Nineteen libraries were constructed and sequenced on nineteen different R9.4 FlowCells using the GridION X5 sequencer	PERSON: Bonita Lam						DNA sequencer				Oxford Nanopore Technologies	
OBI:0002752	Oxford Nanopore PromethION	Oxford Nanopore PromethION	metadata complete	PromethION	A DNA sequencer that is manufactured by the Oxford Nanopore Technologies corporation, capable of running up to 48 flow cells and producing up to 7.6 Tb of data per run. The sequencer produces real-time results and utilizes Nanopore technology, with each flow cell allowing up to 3,000 nanopores to be sequencing simultaneously.	https://nanoporetech.com/products/promethion	Structural variants identified by Oxford Nanopore PromethION sequencing of the human genome.	PERSON: Bonita Lam						DNA sequencer				Oxford Nanopore Technologies	
OBI:0002786	personal protective device	personal protective device	ready for release	PPE|personal protective equipment	A device which is a wearable garment designed to protect the wearer's body from injury or infection.	https://en.wikipedia.org/wiki/Personal_protective_equipment	PPE is equipment worn by a worker to minimize exposure to specific hazards.|Examples of PPE include respirators, gloves, aprons, fall protection, and full body suits, as well as head, eye and foot protection.	https://orcid.org/0000-0002-8844-9165				https://github.com/obi-ontology/obi/issues/1193		device					
OBI:0002787	face mask	face mask	ready for release	face covering|respirator	A personal protective device worn over the nose and mouth as a respiratory filter to inhibit the flow of particles.	Adapted from https://dictionary.cambridge.org/dictionary/english/face-mask	A systematic review on the efficacy of face coverings against respiratory viruses analyzed 19 randomized trials and concluded that use of face masks and respirators appeared to be protective in both health care and community settings	https://orcid.org/0000-0002-8844-9165				https://github.com/obi-ontology/obi/issues/1193		personal protective device					
OBI:0002788	non-medical mask	non-medical mask	ready for release	cloth mask	A face mask not manufactured according to medical equipment standards.	https://www.canada.ca/en/public-health/services/diseases/2019-novel-coronavirus-infection/prevention-risks/about-non-medical-masks-face-coverings.html	A non-medical mask may contain fabrics that are not regulated for use in surgical masks or respirators, or may not be designed to form a seal around the nose and mouth.	https://orcid.org/0000-0002-8844-9165				https://github.com/obi-ontology/obi/issues/1193		face mask					
OBI:0002789	medical mask	medical mask	ready for release	surgical mask	A face mask manufactured according to a recognized medical equipment standard.	https://www.canada.ca/en/public-health/services/diseases/2019-novel-coronavirus-infection/prevention-risks/about-non-medical-masks-face-coverings.html	The finding of a much higher rate of infection in the cloth mask arm could be interpreted as harm caused by cloth masks, efficacy of medical masks, or most likely a combination of both.	https://orcid.org/0000-0002-9578-0788				https://github.com/obi-ontology/obi/issues/1193		face mask					
OBI:0002790	N95 respirator	N95 respirator	ready for release	N95 respirator mask|N95|N95 facemask|N95 face mask	A face mask that meets the U.S. National Institute for Occupational Safety and Health (NIOSH) N95 classification of air filtration, meaning that it filters at least 95% of incoming airborne particles.	https://en.wikipedia.org/wiki/N95_mask		https://orcid.org/0000-0002-8844-9165				https://github.com/obi-ontology/obi/issues/1193		face mask					
OBI:0002791	face shield	face shield	ready for release	faceshield|splash shield	A personal protective device used to protect the wearer's entire face (or part of it) from hazards such as flying objects and road debris, chemical splashes, or alternately potentially infectious materials.	https://en.wikipedia.org/wiki/Face_shield		https://orcid.org/0000-0002-8844-9165				https://github.com/obi-ontology/obi/issues/1193		personal protective device					
OBI:0002792	patient gown	patient gown	ready for release	hospital gown	A personal protective clothing item which is a gown designed for use by a patient to facilitate caregiving by medical staff.	https://en.wikipedia.org/wiki/Patient_gown		https://orcid.org/0000-0002-8844-9165				https://github.com/obi-ontology/obi/issues/1193		personal protective clothing item					
OBI:0002793	scrubs	scrubs	ready for release	scrub clothing item	A personal protective clothing item which is sterilized and which is worn by a health care professional.  It can reference a shirt and pants or dress, and depending on medical protocol, may include a medical cap.	https://en.wikipedia.org/wiki/Scrubs_(clothing)	Examples consist of a short-sleeve V-necked shirt and drawstring pants or a short-sleeve calf-length dress, a tie-back or bouffant-style cap, a mask, a surgical gown, latex gloves, and supportive closed-toe shoes.	https://orcid.org/0000-0002-8844-9165	 			https://github.com/obi-ontology/obi/issues/1193		personal protective clothing item					
OBI:0002794	reusable patient gown	reusable patient gown	ready for release		A patient gown intended to be reused after being laundered.	https://en.wikipedia.org/wiki/Patient_gown		https://orcid.org/0000-0002-8844-9165				https://github.com/obi-ontology/obi/issues/1193		patient gown					
OBI:0002795	disposable patient gown	disposable patient gown	ready for release		A patient gown intended for a single period of continuous use and then disposed of.	https://en.wikipedia.org/wiki/Patient_gown		https://orcid.org/0000-0002-8844-9165				https://github.com/obi-ontology/obi/issues/1193		patient gown					
OBI:0002796	medical gown	medical gown	ready for release	hospital gown	A personal protective clothing item which is a gown worn by a medical professional in order to provide a barrier between patient and professional.	https://en.wikipedia.org/wiki/Medical_gown		https://orcid.org/0000-0002-8844-9165				https://github.com/obi-ontology/obi/issues/1193		personal protective clothing item					
OBI:0002797	apron	apron	ready for release		A garment which is worn over other clothing and covers mainly the front of the body.	https://en.wikipedia.org/wiki/Apron		https://orcid.org/0000-0002-8844-9165				https://github.com/obi-ontology/obi/issues/1193		device					
OBI:0002798	surgical gown	surgical gown	ready for release		A medical gown which is subjected to a sterilization process and which is intended to be worn by a medical professional during surgical procedures.	OBI		https://orcid.org/0000-0002-8844-9165				https://github.com/obi-ontology/obi/issues/1193		medical gown					
OBI:0002799	personal protective glove	personal protective glove	ready for release		A personal protective device which is a glove.	OBI		https://orcid.org/0000-0002-8844-9165				https://github.com/obi-ontology/obi/issues/1193		personal protective clothing item					
OBI:0002800	personal protective clothing item	personal protective clothing item	ready for release		A personal protective device which consists of a garment that serves in place of or in addition to regular body clothing.	OBI		https://orcid.org/0000-0002-8844-9165				https://github.com/obi-ontology/obi/issues/1193		personal protective device					
OBI:0002802	laboratory coat	laboratory coat	ready for release	white coat	A personal protective clothing item which is an overcoat worn by medical or laboratory professionals.	https://en.wikipedia.org/wiki/White_coat		https://orcid.org/0000-0002-8844-9165				https://github.com/obi-ontology/obi/issues/1193		personal protective clothing item					
OBI:0002803	medical glove	medical glove	ready for release		A personal protective glove which is disposable and is used during medical examinations and procedures to help prevent cross-contamination between caregivers and patients.	https://en.wikipedia.org/wiki/Medical_glove		https://orcid.org/0000-0002-8844-9165				https://github.com/obi-ontology/obi/issues/1193		personal protective glove					
OBI:0002804	nitrile glove	nitrile glove	ready for release		A personal protective glove which is made out of nitrile rubber.	https://en.wikipedia.org/wiki/Medical_glove		https://orcid.org/0000-0002-8844-9165				https://github.com/obi-ontology/obi/issues/1193		personal protective glove					
OBI:0002805	transparent droplet barrier	transparent partition	ready for release	transparent partition	A device which is a transparent constructed barrier, usually made out of acrylic (Plexiglass) or polycarbonate plastic, installed in facilities to intercept respiratory droplets, encourage physical distancing requirements.	https://ncceh.ca/content/blog/physical-barriers-covid-19-infection-prevention-and-control-commercial-settings		https://orcid.org/0000-0002-8844-9165				https://github.com/obi-ontology/obi/issues/1193		device					
OBI:0002806	footwear cover	footwear cover	ready for release	shoe cover|boot cover	A personal protective device which is an impermiable material which covers a shoe or boot in order to prevent spread of specific environmental contaminants.	https://en.wiktionary.org/wiki/shoecover		https://orcid.org/0000-0002-8844-9165				https://github.com/obi-ontology/obi/issues/1193		personal protective clothing item					
OBI:0002807	disposable footwear cover	disposable footwear cover	ready for release		A footwear cover which is designed for a single period of continuous use and then disposed of.	OBI		https://orcid.org/0000-0002-8844-9165				https://github.com/obi-ontology/obi/issues/1193		footwear cover					
OBI:0002808	reusable footwear cover	reusable footwear cover	ready for release		A footwear cover which is designed for repeated use.	OBI		https://orcid.org/0000-0002-8844-9165				https://github.com/obi-ontology/obi/issues/1193		footwear cover					
OBI:0002809	surgical N95 respirator	surgical N95 respirator	ready for release	medical respirator|healthcare respirator|surgical N95|surgical N95 respirator	A N95 respirator which has been approved by the FDA as a surgical mask.	https://multimedia.3m.com/mws/media/1794572O/surgical-n95-vs-standard-n95-which-to-consider.pdf		https://orcid.org/0000-0002-8844-9165				https://github.com/obi-ontology/obi/issues/1193		N95 respirator					
OBI:0002810	protective coverall	protective coverall	ready for release		A personal protective clothing item which is a loose fitting coverall for ease of movement, with sleeves, full leggings and often a hood to cover the head. These can also include overshoe pieces to cover footwear and protect against contamination.	https://www.safeopedia.com/definition/863/disposable-coveralls		https://orcid.org/0000-0002-8844-9165				https://github.com/obi-ontology/obi/issues/1193		personal protective clothing item					
OBI:0002811	protective sleeve	protective sleeve	ready for release		A personal protective clothing item which is a protective cover worn over the arm.	https://www.safeopedia.com/definition/974/protective-sleeves	A protective sleeve can be designed to provide protection from heat, welding spatter or hot metal, chemicals, sharp objects, paint or other liquids.	https://orcid.org/0000-0002-8844-9165				https://github.com/obi-ontology/obi/issues/1193		personal protective clothing item					
OBI:0002812	protective apron	protective apron	ready for release		A personal protective clothing item which is an apron.	https://en.wikipedia.org/wiki/Apron		https://orcid.org/0000-0002-8844-9165				https://github.com/obi-ontology/obi/issues/1193		personal protective clothing item					
OBI:0002813	medical cap	medical cap	ready for release	surgical hat|bouffant hat|bouffant cap|scrub cap|medical bonnet	A personal protective device which is worn on the head that helps prevent transmission of contaminants contained in hair and scalp.	https://en.wikipedia.org/wiki/Scrubs_(clothing)		https://orcid.org/0000-0002-8844-9165				https://github.com/obi-ontology/obi/issues/1193		personal protective clothing item					
OBI:0002814	specimen collection device	specimen collection device	ready for release		A device used to collect a specimen.			https://orcid.org/0000-0002-8844-9165						device					
OBI:0002816	chromatography vial	chromatography vial	metadata complete		A vial with cap and container material suited to optical, sanitary and handling requirements of chromatography.	http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01117|GROUP:<http://msi-ontology.sourceforge.net>		PERSON:Daniel Schober						chromatography consumable					
OBI:0002819	specimen pad	specimen pad	ready for release	sampling sponge|specimen sponge|swab|polysponge|surface wipe|absorbant pad|sample pad	A sample collection device consisting of a soft flexible, absorbent pad usually made from natural material such as gauze or cotton, used to absorb specimen fluid or particulate matter.	Derived from NCIT sponge definition.	An absorbent pad and its accompanying container are designed to provide safe storage and transport to various degrees for diagnostic and clinical samples, infectious and hazardous materials, chemicals, pharmaceuticals and environmental samples.	https://orcid.org/0000-0002-8844-9165						specimen collection device					
OBI:0002820	specimen collection swab stick	specimen collection swab stick	ready for release	sponge-stick|sponge stick|sponge probe|polyprobe	A specimen collection device which is a specimen pad attached to a long handle used to collect specimen material.	https://medical-dictionary.thefreedictionary.com/swab	A swab stick allows a worker to collect samples without touching the inside of the bag	https://orcid.org/0000-0002-8844-9165						specimen collection device					
OBI:0002821	cotton swab	cotton swab	ready for release	Q-tip|swab-sampler	A device which is a cotton pad mounted on one or both ends of a stick.	https://en.wikipedia.org/wiki/Cotton_swab		https://orcid.org/0000-0002-8844-9165						device					
OBI:0002822	drag swab	drag swab	ready for release		A specimen collection device consisting of a specimen pad made of sterile gauze which is aseptically attached to a pole by clips or to a string	https://www.fda.gov/food/laboratory-methods-food/environmental-sampling-and-detection-salmonella-poultry-houses		https://orcid.org/0000-0002-8844-9165						specimen collection device		specimen pad			
OBI:0002823	pre-moistened swab stick	pre-moistened swab stick	ready for release		A specimen collection swab stick that is pre-moistened with liquid prior to sampling.			https://orcid.org/0000-0002-8844-9165						specimen collection swab stick					
OBI:0002824	surface wipe	surface wipe	ready for release		A sample collection device consisting of a thin, less absorbent sheet, used to collect material from surfaces.	https://www.science.gov/topicpages/s/surface+wipe+sampling.html	Surface sampling procedures involved the use of polyester wipes, swabs, contact slides (two types), and adhesive tapes; a gelatin filter was used to sample the air.	https://orcid.org/0000-0002-8844-9165						specimen collection device					
OBI:0002830	catheter	catheter	ready for release		A device which is a flexible tube inserted into a body and which enables transfer of fluids into or out of a body.	http://purl.bioontology.org/ontology/MESH/D057785	A catheter left inside the body, either temporarily or permanently, may be referred to as an indwelling catheter.	https://orcid.org/0000-0002-8844-9165						device					
OBI:0002900	ultraviolet light source	ultraviolet light source	metadata incomplete	UV light source	A light source that provides ultraviolet (UV) light for use in a distant area using a delivery system.	Person: Jie Zheng		Person: Jie Zheng			VEuPathDB	https://github.com/obi-ontology/obi/issues/1200		light source					
OBI:0002901	visible light source	visible light source	metadata incomplete		A light source that provides visible light for use in a distant area using a delivery system.	Person: Jie Zheng		Person: Jie Zheng			VEuPathDB	https://github.com/obi-ontology/obi/issues/1200		light source					
OBI:0002902	solar light source	solar light source	metadata incomplete		A light source that light is produced from solar energy.	Person: Jie Zheng|Person: Chris Stoeckert		Person: Jie Zheng|Person: Chris Stoeckert			VEuPathDB	https://github.com/obi-ontology/obi/issues/1200		light source					
OBI:0002920	arthropod trap				A device designed to catch arthropods.	MIRO:30000011		John Judkins				https://github.com/obi-ontology/obi/issues/1217		device					
OBI:0002921	artificial pit shelter				An arthropod trap, consisting of a pit dug in the ground to provide a space for arthropods to rest and be collected.	IRO:0000005		John Judkins				https://github.com/obi-ontology/obi/issues/1217		resting arthropod trap					
OBI:0002922	baited net trap				An arthropod trap designed to work with an animal (which could be human) inside a netted structure. This structure is designed so that an arthropod, attracted by the animal, can fly into the netted structure but can neither escape nor reach the animal.			John Judkins				https://github.com/obi-ontology/obi/issues/1217		arthropod trap					
OBI:0002923	barrier trap				An arthropod trap consisting of a static physical barrier designed to funnel arthropods in flight into a container.	IRO:0000017		John Judkins				https://github.com/obi-ontology/obi/issues/1217		arthropod trap					
OBI:0002924	BG-Counter				A device manufactured by BioGents that is designed to count mosquitoes passing through the device, differentiating the mosquitoes from other arthropods.	IRO:0000143		John Judkins				https://github.com/obi-ontology/obi/issues/1217		device				BioGents	
OBI:0002925	BG-Sentinel trap				An arthropod trap that is manufactured by Biogents and is designed to attract arthropods through the use of a motorized fan to mimic convection currents produced by a human. The current also pulls arthropods into the trap, where a layer of gauze prevents the arthropods from escaping along with the air current.	IRO:0000028|VSMO:0001906		John Judkins				https://github.com/obi-ontology/obi/issues/1217		arthropod trap				BioGents	
OBI:0002926	Centers for Disease Control and Prevention light trap			CDC light trap	A light trap that is designed similarly to the New Jersey trap—in that it uses motorized suction and light attractant—and is powered by a six-volt battery.	IRO:0000163		John Judkins	This trap is also designed to be lightweight and operate in environments in which electricity may be scarce.			https://github.com/obi-ontology/obi/issues/1217		light trap					
OBI:0002927	dipper for arthropod immatures			dipper for immatures	A device that is designed for the collection of arthropod larvae or pupae from water and has the shape of a ladle or a pan.	VSMO:0001479		John Judkins				https://github.com/obi-ontology/obi/issues/1217		device					
OBI:0002928	encephalitis virus surveillance trap			EVS trap	A light trap that uses carbon dioxide as attractant. The trap consists of a container of dry ice with holes in the bottom to allow the carbon dioxide to flow downward into a separate container, in which a motorized fan creates suction to collect arthropods.	IRO:0000029|VSMO:0001295		John Judkins				https://github.com/obi-ontology/obi/issues/1217		light trap					
OBI:0002929	gravid trap				An arthropod trap that is designed to collect gravid female arthropods or their eggs.	IRO:0000030		John Judkins				https://github.com/obi-ontology/obi/issues/1217		arthropod trap					
OBI:0002930	light trap				An arthropod trap that uses light as an attractant.	MIRO:30000065		John Judkins				https://github.com/obi-ontology/obi/issues/1217		arthropod trap					
OBI:0002931	light trap for indoor use			indoor light trap	A light trap designed to be placed inside a building.	MIRO:30000009		John Judkins				https://github.com/obi-ontology/obi/issues/1217		light trap					
OBI:0002932	light trap for outdoor use			outdoor light trap	A light trap designed to be placed outside a building.	MIRO:30000010		John Judkins				https://github.com/obi-ontology/obi/issues/1217		light trap					
OBI:0002933	Mosquito Magnet Pro trap				An arthropod trap that is powered by propane and is designed to emit a combination of carbon dioxide, heat, water, and oct-1-en-3-ol attractants while simultaneously using suction to trap arthropods.	IRO:0000022		John Judkins				https://github.com/obi-ontology/obi/issues/1217		arthropod trap					
OBI:0002934	MosquiTRAP				A gravid trap consisting of an arthropod attractant and adhesive surface.	IRO:0000140		John Judkins				https://github.com/obi-ontology/obi/issues/1217		gravid trap					
OBI:0002935	New Jersey light trap			New Jersey trap	A light trap that is designed to use motorized suction to trap arthropods in a collection bag once they approach the light attractant.	IRO:0000031		John Judkins				https://github.com/obi-ontology/obi/issues/1217		light trap					
OBI:0002936	Onderstepoort Veterinary Institute light-suction trap			OVI light-suction trap	A light trap that is designed to use motorized suction to trap arthropods in a collection bag once they approach the attractant. The light is supplied by an 8 watt tube, and the fan providing the suction has an 11-centimeter diameter.	IRO:0000154|Parasites Vectors 8, 239 (2015)		John Judkins				https://github.com/obi-ontology/obi/issues/1217		arthropod trap					
OBI:0002937	outlet window trap			outlet window trap	An arthropod trap that is positioned adjacent to a window of a building and is designed to collect arthropods flying out of the building.	MIRO:30000020		John Judkins				https://github.com/obi-ontology/obi/issues/1217		arthropod trap					
OBI:0002938	ovitrap			oviposition trap	An arthropod trap that consists of a container holding a mesh layer above water and is designed to trap arthropods hatched from eggs dropped over the water by gravid females.	MIRO:30000016|VSMO:0001501		John Judkins				https://github.com/obi-ontology/obi/issues/1217		arthropod trap					
OBI:0002939	resting arthropod trap				An arthropod trap that is designed to be attractive to an arthropod as a place to rest during a period of inactivity.			John Judkins				https://github.com/obi-ontology/obi/issues/1217		arthropod trap					
OBI:0002940	resting box trap			resting box catch	An arthropod trap that consists of a box that is open on one end. The placement of the box and modifications to it are done in such a way that it becomes attractive to an arthropod as a place to rest during a period of inactivity.	IRO:0000021		John Judkins				https://github.com/obi-ontology/obi/issues/1217		resting arthropod trap					
OBI:0002941	resting bucket			resting bucket catch	An arthropod trap that consists of a bucket, which is lined with fabric and placed on its side, and a wet cloth inside the bucket. The placement of the box and modifications to it are done in such a way that it becomes attractive to an arthropod as a place to rest during a period of inactivity (not actively seeking a host).	IRO:0000141		John Judkins				https://github.com/obi-ontology/obi/issues/1217		resting arthropod trap					
OBI:0002942	Shannon trap			shannon trap catch	An arthropod trap that is made of cloth and netting and is designed to be suspended from above (e.g. from a tree). It is also designed so that the arthropod enters the trap from beneath, being attracted to some bait, and is prevented from escaping upward by the suspended cloth, which allows them to be collected from the upper interior of the trap.	IRO:0000191		John Judkins				https://github.com/obi-ontology/obi/issues/1217		arthropod trap					
OBI:0002943	sticky resting bucket			sticky resting bucket catch	An arthropod trap that consists of a bucket, which is lined with adhesive and placed on its side, and a wet cloth inside the bucket. The placement of the box and modifications to it are done in such a way that it becomes attractive to an arthropod as a place to rest during a period of inactivity. The trap is designed for arthropods to become caught in the adhesive so that they can be collected.	IRO:0000142		John Judkins				https://github.com/obi-ontology/obi/issues/1217		resting arthropod trap					
OBI:0002944	sticky trap			sticky trap catch	An arthropod trap that is designed to capture arthropods resting on a surface by coating the surface with adhesive.	IRO:0000128		John Judkins				https://github.com/obi-ontology/obi/issues/1217		resting arthropod trap					
OBI:0003005	device for collection of resting adult arthropods				A device that is designed to provide a solid surface that is attractive to an arthropod as a place to rest during a period of inactivity.	VSMO:0001355		John Judkins			VEuPathDB	https://github.com/obi-ontology/obi/issues/1302		device					
OBI:0003006	well net for arthropod immatures				A device that is designed for the collection of arthropod larvae or pupae from water and consists of a conical net.			John Judkins			VEuPathDB	https://github.com/obi-ontology/obi/issues/1302		device					
OBI:0003007	arthropod trap containing small non-human animal bait			trap containing small non-human animal bait	An arthropod trap that uses as attractant an animal that is not human and is the size of a chicken or smaller.	VSMO:0001595		John Judkins			VEuPathDB	https://github.com/obi-ontology/obi/issues/1302		arthropod trap					
OBI:0003008	trap for emerging adult arthropods				An arthropod trap that is designed to trap an arthropod as it emerges from water at the beginning of its adult stage.	VSMO:0001352|American Midland Naturalist, Vol. 97, No. 2 (Apr., 1977), pp. 381-389		John Judkins			VEuPathDB	https://github.com/obi-ontology/obi/issues/1302		arthropod trap					
OBI:0003046	free-standing window trap				An arthropod trap that consists of a transparent window placed in a box that holds a liquid solution deadly to arthropods. This trap is designed to stop an arthropod in flight, causing it to fall into the liquid and die.	VSMO:0001649	Jonsson developed a free-standing window trap consisting of a 16 x 20-cm perspex box, 16 cm high and divided in the middle by a 20 x 36-cm sheet of perspex (window).  The two compartments of the box are filled to a depth of about 12 cm with 4-6% formalin containing a few drops of detergent; in winter ethylene glycol can be added to prevent freezing.  One or two holes drilled in one side of the box at 12 cm and covered with fine netting prevent the trap overflowing after heavy rain.  Traps are mounted on aluminium poles.  Flying insects on hitting the transparent vertical plastic window fall into the formalin.  The window trap may catch vectors that are seeking a host or moving for other purposes. [ISBN:9781402066658]	VEuPathDB						arthropod trap					
OBI:0003048	BG-lure scent dispenser			BG-lure	A device manufactured by BioGents that is designed for operation with the BG-Sentinel trap and releases an attractant that mimics the scent of human skin.	IRO:0001060		VEuPathDB						device				BioGents	
OBI:0003049	hand-held sweep net				A device that consists of a network of mesh and is designed to capture adult arthropods.	VSMO:0001522		VEuPathDB						device					
OBI:0003050	Centers for Disease Control and Prevention gravid trap			CDC gravid trap	A gravid trap that consists of a pan holding a hay infusion, motorized fan, and collection bag. This trap is designed to attract gravid female arthropods to the infused material, which would serve as an oviposition medium, and then draw them into the bag with the current generated by the fan.	VSMO:0001510	The original trap CDC gravid trap (or gravid trap of Reiter) consists of a 3 inch diameter PVC inlet tube housing a 6 V motor, as used in CDC traps, on which is mounted a four-bladed 3 inch counter-clockwise fan. The inlet tube is clamped between two vertical wooden boards that fit over a black plastic box (18.5 x 14.0 x 6.5 inches). A plastic 12 inch long PVC chimney slots into the upper end of the inlet tube. The top half consists of three struts that fit into and support a netting collecting bag. For this the middle of the collecting bag is reinforced with a circular patch of denim cloth. The oviposition attractant is made by adding 1 lb of hay and 1 oz each of dried brewer's yeast and lactalbumen powder to 30 gallons of tap water. This infusion is allowed to mature for 5 days. This original gravid mosquito trap of Reiter suffers from certain limitations, namely up to 10% of the catch of adults is damaged by passing through the fan blades, and adults tend to die of desiccation. [ISBN:9781402066658]	VEuPathDB						gravid trap					
OBI:0003114	Illumina MiniSeq	Illumina MiniSeq		MiniSeq	A small benchtop DNA sequencer which is manufactured by the Illumina corporation with integrated cluster generation, sequencing and data analysis. The sequencer accommodates various flow cell configurations and can produce up to 25M single reads or 50M paired-end reads per run.	url:https://www.illumina.com/systems/sequencing-platforms/miniseq.html	Whole genome sequencing of Klebsiella pneumoniae ST11 was performed using an Illumina Miniseq Sequencing System. PMID:31493526	PERSON: Bonita Lam						DNA sequencer				Illumina	
OBI:0003289	mosquito membrane feeding device				A device that contains blood in a membrane penetrable to mosquitoes, designed to feed mosquitoes without the need for an animal host.	VEuPathDB		John Judkins				https://github.com/obi-ontology/obi/issues/1439		device					
OBI:0003369	assay kit	assay kit			A device that consists of reagents and devices that enable the performance of a specific type of assay, which could, in addition, require specific instruments not included in the kit.	OBI, VEuPathDB	Glutathione S-Transferase (GST) Assay Kit: https://www.sigmaaldrich.com/deepweb/assets/sigmaaldrich/product/documents/101/301/cs0410bul.pdf	John Judkins			VEuPathDB	https://github.com/obi-ontology/obi/issues/1456		device					
OBI:0003386	Illumina HiSeq 1500	Illumina HiSeq 1500		HiSeq 1500	A DNA sequencer which is manufactured by the Illumina corporation, with a single flow cell. Built upon sequencing by synthesis technology, the machine employs dual surface imaging and offers two high-output options and one rapid-run option.	https://jp.support.illumina.com/content/dam/illumina-support/documents/documentation/system_documentation/hiseq1500/hiseq-1500-system-guide-15035788-03.pdf		Jain Aluvathingal|Michelle Giglio|Suvarna Nadendla			gEAR	https://github.com/obi-ontology/obi/issues/1546		DNA sequencer				Illumina	
OBI:0003387	NextSeq 550	NextSeq 550			A DNA sequencer manufactured by the Illumina corporation, which provides the increased flexibility of microarray scanning in addition to sequencing.	https://www.illumina.com/systems/sequencing-platforms/nextseq.html		Jain Aluvathingal|Michelle Giglio|Suvarna Nadendla			gEAR	https://github.com/obi-ontology/obi/issues/1546		DNA sequencer				Illumina	
OBI:0003388	Agilent-026655 Whole Mouse Genome Microarray 4x44K v2	Agilent-026655 Whole Mouse Genome Microarray 4x44K v2			A DNA microarray manufactured with Agilent 60-mer SurePrint Technology .The SurePrint G3 Mouse Gene Expression 4x44K v2 Microarray provide full coverage of the mouse transcriptome using the latest annotation databases, including long non-coding RNA(lncRNA). Each glass slide is formatted with four high-definition 44K arrays.	https://www.agilent.com/cs/library/brochures/IBS-231%20genomics%20catalog%20mech%20FINAL.pdf		Jain Aluvathingal|Michelle Giglio|Suvarna Nadendla			gEAR	https://github.com/obi-ontology/obi/issues/1546		DNA microarray				Agilent	
OBI:0003389	Agilent-030493 SurePrint G3 Mouse Exon 4x180K Microarray	Agilent-030493 SurePrint G3 Mouse Exon 4x180K Microarray			A DNA microarray manufactured with Agilent 60-mer SurePrint Technology for studying exon-level gene expression changes. The SurePrint G3 Mouse Exon 4x180K Microarray include probes targeting individual exons. Each glass slide formatted with four 180K arrays.	https://www.agilent.com/cs/library/brochures/5990-6928en_lo.pdf		Jain Aluvathingal|Michelle Giglio|Suvarna Nadendla			gEAR	https://github.com/obi-ontology/obi/issues/1546		DNA microarray				Agilent	
OBI:0003390	Agilent-074809 SurePrint G3 Mouse GE v2 8x60K Microarray	Agilent-074809 SurePrint G3 Mouse GE v2 8x60K Microarray			A DNA microarray manufactured with Agilent 60-mer SurePrint technology which provides comprehensive coverage of genes and transcripts using the latest annotation databases. The SurePrint G3 Mouse Gene Expression 8x60K v2 Microarray features complete coverage of established RefSeq coding transcripts (NM) from the latest build and updated long non-coding RNA (lncRNA) content to ensure relevant research.Each glass slide formatted with eight high-definition 60K arrays.	https://www.agilent.com/cs/library/usermanuals/public/G4140-90050_GeneExpression_TwoColor_6.9.pdf		Jain Aluvathingal|Michelle Giglio|Suvarna Nadendla			gEAR	https://github.com/obi-ontology/obi/issues/1546		DNA microarray				Agilent	
OBI:0003391	Affymetrix Mouse Genome 430 2.0 Array	Affymetrix Mouse Genome 430 2.0 Array		GeneChip Mouse Genome 430 2.0 Array	A DNA microarray manufactured by Affymetrix, which includes complete coverage of the GeneChip Mouse Expression Set 430, for analysis of over 39,000 transcripts and variants from more than 34,000 well-characterized mouse genes and UniGene clusters, on a single array. The sequences for this array were selected from GenBank™, dbEST, and RefSeq., and sequence clusters cretaed from the UniGene database.	https://www.thermofisher.com/order/catalog/product/900497		Jain Aluvathingal|Michelle Giglio|Suvarna Nadendla			gEAR	https://github.com/obi-ontology/obi/issues/1546		DNA microarray				Affymetrix	
OBI:0003392	Affymetrix Mouse Genome 430A 2.0 Array	Affymetrix Mouse Genome 430A 2.0 Array		GeneChip Mouse Genome 430A 2.0 Array	A DNA microarray manufactured by Affymetrix for gene expression analysis focusing on approximately 14,000 well-characterized genes in the transcribed mouse genome using single-array cartridge. Sequences used in the design of the array were selected from GenBank™, dbEST, and RefSeq. The sequence clusters were created from the UniGene database.	https://www.thermofisher.com/order/catalog/product/900500TS?SID=srch-srp-900500TS		Jain Aluvathingal|Michelle Giglio|Suvarna Nadendla			gEAR	https://github.com/obi-ontology/obi/issues/1546		DNA microarray				Affymetrix	
OBI:0003393	Affymetrix Mouse Gene 1.0 ST Array	Affymetrix Mouse Gene 1.0 ST Array		GeneChip Mouse Gene 1.0 ST Array	A DNA microarray manufactured by Affymetrix, which is a whole-transcript array that includes probes to measure both messenger (mRNA) and long intergenic non-coding RNA transcripts (lincRNA). This whole-transcript array design provides a complete expression profile of mRNA as well as the intermediary lincRNA transcripts that impact the mRNA expression profile.	https://www.thermofisher.com/order/catalog/product/901168		Jain Aluvathingal|Michelle Giglio|Suvarna Nadendla			gEAR	https://github.com/obi-ontology/obi/issues/1546		DNA microarray				Affymetrix	
OBI:0003394	Affymetrix Mouse Gene 2.1 ST Array	Affymetrix Mouse Gene 2.1 ST Array		GeneChip Mouse Gene 2.1 ST Array	A DNA microarray manufactured by Affymetrix, which is a whole-transcript array that includes probes to measure both messenger (mRNA) and long intergenic non-coding RNA transcripts (lincRNA).To supplement the lincRNA data contained in RefSeq, we used sequence and transcript data from lncRNA db.	https://www.thermofisher.com/document-connect/document-connect.html?url=https%3A%2F%2Fassets.thermofisher.com%2FTFS-Assets%2FLSG%2Fbrochures%2Fmouse_gene_array_datasheet.pdf		Jain Aluvathingal|Michelle Giglio|Suvarna Nadendla			gEAR	https://github.com/obi-ontology/obi/issues/1546		DNA microarray				Affymetrix	
OBI:0003395	Affymetrix Rhesus Macaque Genome Array	Affymetrix Rhesus Macaque Genome Array		GeneChip Rhesus Macaque Genome Array	A DNA microarray manufactured by Affymetrix,which is a single-labeled high-density oligonucleotide array, designed to study gene expression in the rhesus animal model and to interrogate rhesus transcripts orthologous to the 3' end of human transcripts. The array consists of over 52,000 probe sets representing more than 20,000 genes, and several relevant viral organisms for studying host-disease immune response.	https://www.thermofisher.com/document-connect/document-connect.html?url=https%3A%2F%2Fassets.thermofisher.com%2FTFS-Assets%2FLSG%2Fmanuals%2FMAN0017705_702023_RhesusArray_PI.pdf		Jain Aluvathingal|Michelle Giglio|Suvarna Nadendla			gEAR	https://github.com/obi-ontology/obi/issues/1546		DNA microarray				Affymetrix	
OBI:0003396	Affymetrix Human Transcriptome Array 2.0	Affymetrix Human Transcriptome Array 2.0		GeneChip Human Transcriptome Array 2.0	A DNA microarray manufactured by Affymetrix, to go beyond gene-level expression profiling to accurately detect all known transcript isoforms produced by a gene. The array design covers >245,000 coding transcripts, >40,000 non-coding transcripts and >339,000 probe sets covering exon-exon junctions, thus ensuring uniform coverage of the transcriptome.	https://www.thermofisher.com/document-connect/document-connect.html?url=https%3A%2F%2Fassets.thermofisher.com%2FTFS-Assets%2FLSG%2Fbrochures%2Fhta_array_2_0_datasheet.pdf		Jain Aluvathingal|Michelle Giglio|Suvarna Nadendla			gEAR	https://github.com/obi-ontology/obi/issues/1546		DNA microarray				Affymetrix	
OBI:0003397	Affymetrix Human Genome U219 Array	Affymetrix Human Genome U219 Array		Applied Biosystems GeneChip PrimeView Human Gene Expression Array	A DNA microarray manufactured by Affymetrix, which comprises more than 530,000 probes covering more than 36,000 transcripts and variants, which represent more than 20,000 genes mapped through RefSeq or via UniGene annotation. Sequences used in the design of the array were selected from the RefSeq version 36, UniGene database 219, and full-length human mRNAs from GenBank™.	https://www.thermofisher.com/document-connect/document-connect.html?url=https%3A%2F%2Fassets.thermofisher.com%2FTFS-Assets%2FLSG%2Fmanuals%2FMAN0017681_703036_GeneChipPrimeViewArray_PI.pdf		Jain Aluvathingal|Michelle Giglio|Suvarna Nadendla			gEAR	https://github.com/obi-ontology/obi/issues/1546		DNA microarray				Affymetrix	
OBI:0003398	Affymetrix Human Gene 2.0 ST Array	Affymetrix Human Gene 2.0 ST Array		GeneChip Human Gene 2.0 ST Array	A DNA microarray manufactured by Affymetrix, which provides the most accurate, sensitive, and comprehensive measurement of protein coding (mRNA) and long intergenic non-coding RNA (lincRNA) transcripts. The array design covers >33,500 coding transcripts and >11,000 lincRNA transcripts thus enabling researchers to understand whole-transcriptome gene expression at the gene and exon levels, which allows the study of transcript variants and alternative splicing events.	https://www.thermofisher.com/document-connect/document-connect.html?url=https%3A%2F%2Fassets.thermofisher.com%2FTFS-Assets%2FLSG%2Fbrochures%2Fhugene_2_st_datasheet.pdf		Jain Aluvathingal|Michelle Giglio|Suvarna Nadendla			gEAR	https://github.com/obi-ontology/obi/issues/1546		DNA microarray				Affymetrix	
OBI:0003399	Affymetrix Clariom S Assay, Human	Affymetrix Clariom S Assay, Human			A DNA microarray manufactured by Affymetrix, to obtain a gene-level view of the human transcriptome. The assay design covers >20,000 well-annotated genes, providing researchers with the ability to perform gene-level expression profiling studies, to identify expression biomarkers , and to quickly assess changes in key genes and pathways.	https://www.thermofisher.com/order/catalog/product/902926#1_1		Jain Aluvathingal|Michelle Giglio|Suvarna Nadendla			gEAR	https://github.com/obi-ontology/obi/issues/1546		DNA microarray				Affymetrix	
OBI:0003400	Affymetrix Clariom S Assay, Mouse	Affymetrix Clariom S Assay, Mouse			A DNA microarray manufactured by Affymetrix, to obtain a gene-level view of the mouse transcriptome. The assay design covers >20,000 well-annotated genes, providing researchers with the ability to perform gene-level expression profiling studies, to identify expression biomarkers, and to quickly assess changes in key genes and pathways.	https://www.thermofisher.com/order/catalog/product/902931?SID=srch-srp-902931,		Jain Aluvathingal|Michelle Giglio|Suvarna Nadendla			gEAR	https://github.com/obi-ontology/obi/issues/1546		DNA microarray				Affymetrix	
OBI:0003401	Illumina HumanHT-12 V4.0 expression beadchip	Illumina HumanHT-12 V4.0 expression beadchip			An Illumina BeadChip which employs direct-hybridization assay, for whole-genome expression profiling and expression-based quantitative trait loci (eQTL) studies. This BeadChip contains 12 arrays, each featuring more than 48,000 probes, targeting more than 31,000 annotated genes, providing genome-wide coverage of well-characterized genes, gene candidates, and splice variants.	https://www.illumina.com/documents/products/technotes/technote_humanht_12_imputation.pdf		Jain Aluvathingal|Michelle Giglio|Suvarna Nadendla			gEAR	https://github.com/obi-ontology/obi/issues/1546		Illumina BeadChip				Illumina	
OBI:0003402	Illumina MouseRef-8 v2.0 beadchip	Illumina MouseRef-8 v2.0 beadchip			An Illumina BeadChip which employs direct-hybridization assay, for whole-genome expression profiling in the mouse.This Beadchip contains 8 microarrays, featuring more than 25,000 probes per array, derived from the NCBI RefSeq database and supplemented with MEEBO and RIKEN FANTOM2 content.	https://support.illumina.com/content/dam/illumina-support/documents/documentation/chemistry_documentation/arraykits/whole-genome-gene-expression/WGGEX_Direct_Hybridization_Assay_Guide_11322355_A.pdf, https://www.illumina.com/documents/products/datasheets/datasheet_gene_exp_analysis.pdf		Jain Aluvathingal|Michelle Giglio|Suvarna Nadendla			gEAR	https://github.com/obi-ontology/obi/issues/1546		Illumina BeadChip				Illumina	
OBI:0003403	Affymetrix Mouse Exon Junction Array	Affymetrix Mouse Exon Junction Array			A DNA microarray manufactured by Affymetrix, used to identify exon-exon junctions associated with alternate splice variants in the mouse transcriptome.	https://academic.oup.com/bioinformatics/article/26/2/268/209989		Jain Aluvathingal|Michelle Giglio|Suvarna Nadendla			gEAR	https://github.com/obi-ontology/obi/issues/1546		DNA microarray				Affymetrix	
OBI:0003404	Affymetrix Human Exon Junction Array	Affymetrix Human Exon Junction Array			A DNA microarray manufactured by Affymetrix, used to identify exon-exon junctions associated with alternate splice variants in the human transcriptome.	https://academic.oup.com/bioinformatics/article/26/2/268/209989		Jain Aluvathingal|Michelle Giglio|Suvarna Nadendla			gEAR	https://github.com/obi-ontology/obi/issues/1546		DNA microarray				Affymetrix	
OBI:0003454	Mosquito Magnet Liberty Plus trap				An arthropod trap that is designed to emit a combination of carbon dioxide, heat, water, and oct-1-en-3-ol attractants while simultaneously using suction to trap arthropods. This trap has the same design as the Mosquito Magnet Pro trap but is smaller, is more lightweight, and uses a main line electricity supply instead of propane to power itself. Both use propane to produce the arthropod attractor.	VEuPathDB						https://github.com/obi-ontology/obi/issues/1523		arthropod trap					
OBI:0003481	cow-baited arthropod trap				A resting arthropod trap that consists of a tent inside which an adult cow is tethered to the ground, in order to attract arthropods and collect those that rest on the interior walls of the tent.	Sarah Kelly		John Judkins ORCID:0000-0001-6595-0902				https://github.com/obi-ontology/obi/issues/1602		device					'capable of' some 'arthropod specimen collection process'
OBI:0003489	Scrub Typhus Detect IgM ELISA kit				An assay kit that is manufactured by InBios International to use ELISA to test for IgM antibodies for Orientia tsutsugamushi strains Karp, Kato, Gilliam, and TA 716, with a protein microarray that has a 96-well plate and the 56-kDa type-specific antigen.	https://inbios.com/scrub-typhus-detecttm-igm-elisa-kit-intl/		John Judkins ORCID:0000-0001-6595-0902						assay kit				InBios	('capable of' some 'ELISA measuring Orientia tsutsugamushi IgM antibody')
OBI:0003490	Panbio Dengue IgM capture ELISA kit				An assay kit that is manufactured by Abbott to test for IgM antibodies for Dengue with a two-plate protein microarray. One plate contains stabilized Dengue viruses 1 through 4, and the other plate contains anti-human IgM antibody.			John Judkins ORCID:0000-0001-6595-0902						assay kit				Abbott	('capable of' some 'microarray assay measuring Dengue IgM antibody')
OBI:0003491	Panbio Dengue Early ELISA kit				An assay kit that is manufactured by Abbott to detect the NS1 Dengue viral protein with a protein microarray and an anti-NS1 monoclonal antibody.			John Judkins ORCID:0000-0001-6595-0902						assay kit				Abbott	('capable of' some 'microarray assay measuring NS1')
OBI:0003492	SD Bioline Chikungunya IgM RDT kit				A device manufactured by Abbott for rapid detection of human IgM antibodies for Chikungunya virus in blood, using analytical chromatography.	https://www.indiamart.com/proddetail/abbott-sd-bioline-chikungunya-igm-test-kit-12908515588.html		John Judkins ORCID:0000-0001-6595-0902						assay kit				Abbott	('capable of' some 'analytical chromatography measuring Chikungunya IgM antibody')
OBI:0003493	SD Bioline Chikungunya IgM capture ELISA kit				An assay kit that is manufactured by Abbott to detect human IgM antibodies for Chikungunya with a protein microarray and ELISA.			John Judkins ORCID:0000-0001-6595-0902						assay kit				Abbott	('capable of' some 'ELISA measuring Chikungunya IgM antibody')
OBI:0003494	Advantage Chikungunya IgM Card kit				An assay kit that is manufactured by J. Mitra to detect human IgM antibodies for Chikungunya virus with a protein microarray and double-antigen sandwich ELISA.			John Judkins ORCID:0000-0001-6595-0902						assay kit				'J. Mitra'	('capable of' some 'microarray ELISA measuring Chikungunya IgM antibody')
OBI:0003550	odor baited CDC light trap			human odour baited light trap	A CDC light trap that uses odorous gas from a human being as an attractant, by pumping it from the room where the human being sleeps into the trap.	VEuPathDB		John Judkins ORCID:0000-0001-6595-0902				https://github.com/obi-ontology/obi/issues/1654		Centers for Disease Control and Prevention light trap					
OBI:0003551	resting clay pot trap			resting clay pot catch	A resting arthropod trap that consists of a container composed primarily of clay.			John Judkins ORCID:0000-0001-6595-0902				https://github.com/obi-ontology/obi/issues/1651		resting arthropod trap					
OBI:0003606	Illumina NextSeq 1000			NextSeq 1000	A DNA sequencer which is manufactured by the Illumina corporation using sequence-by-synthesis chemistry that fits on a benchtop and uses P1 and P2 flow cells.	https://www.illumina.com/systems/sequencing-platforms/nextseq-1000-2000.html		Sebastian Duesing			GENEPIO	https://github.com/obi-ontology/obi/issues/1711	subclass	DNA sequencer				Illumina	
OBI:0003650	Illumina Infinium MethylationEPIC v2.0 BeadChip	Illumina Infinium MethylationEPIC v2.0 BeadChip			An Illumina methylation BeadChip that targets  935,000 methylation sites per sample at single-nucleotide resolution.	https://www.illumina.com/products/by-type/microarray-kits/infinium-methylation-epic.html		Sebastian Duesing				https://github.com/obi-ontology/obi/issues/1665		Illumina methylation BeadChip					
OBI:0003663	Illumina NovaSeq X	Illumina NovaSeq X		NovaSeq X System|NovaSeq X Series	A DNA sequencer with three flow cell types manufactured by Illumina. The NovaSeq X provides an output of up to 8 Tb (26-52 billion reads per run). The sequencer utilizes XLEAP-SBS chemistry, an advanced version of Illumina's sequencing by synthesis (SBS) technology, which enables faster and more accurate sequencing.	https://emea.illumina.com/systems/sequencing-platforms/novaseq-x-plus.html		Morgana Barroso Oquendo			Morgana Barroso Oquendo	https://github.com/obi-ontology/obi/issues/1802	subclass	DNA sequencer				Illumina	
OBI:0003664	Illumina NovaSeq X Plus	Illumina NovaSeq X Plus		NovaSeq X System|NovaSeq X Series	A DNA sequencer with three flow cell types manufactured by Illumina. It features a dual-flow cell configuration, allowing to reach an output of up to 16 Tb (52-104 billion reads per run). The sequencer utilizes XLEAP-SBS chemistry, an advanced version of Illumina's sequencing by synthesis (SBS) technology, which enables faster and more accurate sequencing.	https://emea.illumina.com/systems/sequencing-platforms/novaseq-x-plus.html		Morgana Barroso Oquendo			Morgana Barroso Oquendo	https://github.com/obi-ontology/obi/issues/1802	subclass	DNA sequencer				Illumina	
OBI:0400005	A10-Analyzer	A10-Analyzer	ready for release		A A10 is a flow_cytometer_analyser manufactured by Apogee. It uses an arc lamp as a light source, with choices of 75W Xe, 75W Xe/Hg or 100W Hg arc lamps. It has filters and collectors for up to three fluorescent parameters and two scatter parameters. It uses analog electronics. The A10 can be used for measuring the properties of individual cells.	http://www.apogeeflow.com/flow_cytometry_products.htm		John Quinn						flow cytometer analyzer					
OBI:0400006	A40-MiniFCM	A40-MiniFCM	ready for release		A A40-MiniFCM is a flow_cytometer_analyser that allows for the choice of one of four lasers (375nm, 405nm,488nm, 532nm, 635nm), and PMTs and filters for collecting up to four parameters. It uses digital electronics. A military version of this cytometer is available as well. The A40-MiniFCM is geared towards the most demanding applications such as archaea, bacteria and large virus.	http://www.apogeeflow.com/flow_cytometry_products.htm		John Quinn						flow cytometer analyzer					
OBI:0400007	analog-to-digital converter	analog-to-digital converter	metadata incomplete	A2D|A-D	An analog-to-digital_converter is an instrument that converts an infinite resolution analog signal to a finite resolution digital signal.	http://en.wiktionary.org/wiki/Analog-to-Digital_Converter	The analog to digital converter transformed the analog output from the photomultiplier tube to a digital signal for collection.	John Quinn|Melanie Courtot						device	signal conversion function				
OBI:0400008	flow cytometer analyzer	flow cytometer analyzer	ready for release		An analyser is a flow_cytometer that is used to measure properties of particles (whole cells, nuclei, chromosomes, diatoms, plankton, bacteria, viruses) by moving these particles through a detection chamber. An analyser is used to collect data for analysis.	http://www.flocyte.com/FRTP/Resources/flow_cytometry_glossary.htm	FACS Calibur, Luminex 100	John Quinn						flow cytometer	measure function	flow cell|light source|optical filter|photodetector			
OBI:0400009	arc lamp	arc lamp	metadata incomplete		Arc lamp is a light source that produces light by an electric arc (or voltaic arc). The lamp consists of two electrodes typically made of tungsten which are separated by a gas. The type of lamp is often named by the gas contained in the bulb; including neon, argon, xenon, krypton, sodium, metal halide, and mercury. The electric arc in an arc lamp consists of gas which is initially ionized by a voltage and is therefore electrically conductive. To start an arc lamp, usually a very high voltage is needed to ignite or strike the arc. This requires an electrical circuit sometimes called an igniter, which is part of a larger circuit called the ballast. The ballast supplies a suitable voltage and current to the lamp as its electrical characteristics change with temperature and time. Older cytometers may use arc lamps to irradiate particles at the interrogation point.	http://en.wikipedia.org/wiki/Arc_lamp	The Jablochkoff Candle	John Quinn						light source					
OBI:0400010	argon ion laser	argon ion laser	metadata incomplete		An argon-ion laser is an ion laser that uses argon ions as the lasing medium. These lasers are used primarily to emit light at wave lengths of 458 nm, 488 nm or 514.5 nm, though it is possible to use them to emit several wavelengths of blue and green light. Argon-ion lasers can emit light at many different wave lenghts, and excite a number of different flourochromes.	John Quinn|http://en.wikipedia.org/wiki/Laser#Gas_lasers	argon ion laser in a cytometer	Daniel Schober						ion laser					
OBI:0400011	avalanche photodiode	avalanche photodiode	metadata incomplete		An avalanche photodiode is typically used to collect photons emitted by forward scatter because it is far less sensitive, and less likely o be burned out, than a PMT. A photodiode with high quantum efficiency and a mechanism for producing gains as high as a few thousand.	Practical Flow Cytometry 4th Edition, Howard Shapiro, ISBN-10: 0471411256, ISBN-13: 978-0471411253	C30644E -  InGaAs Avalanche Photodiode	John Quinn						photodiode					
OBI:0400012	Bactiflow	Bactiflow	ready for release		A Bactiflow is a flow_cytometer_analyser manufactured by Chemunex SA. It is a cell counter for bacteria and other micro organisms. Bacteria are stained with a fluorochrome and the number of particles that fluoresce are counted. The system uses digital electronics, a single laser and a single detector. An ALS version is available as well - Automatic Labeling System. The Bactiflow is specialized cytometer used exclusively for counting microbes.	http://www.chemunex.com/products/chemframe.htm		John Quinn						flow cytometer analyzer					
OBI:0400013	band pass filter	band pass filter	metadata incomplete		A band pass filter is an optical filter that passes wavelengths of light within a certain range and rejects (attenuates) frequencies outside that range. The passed wavelengths are indicated in the specifications of the filter and its name. A 480/20 band-pass filter pass light with at wavelengths of 460 to 500 nm and attenuates all others.	http://en.wikipedia.org/wiki/Band_pass_filter	530/30 BP filter, 585/42 BP filter	Person:John Quinn						optical filter					
OBI:0400014	BioSorter1000	BioSorter1000	ready for release		A BioSorter1000 is a flow_cytometer_sorter manufactured by Union Biometrica. It includes analog electronics, 488/514 nm multi-line Argon-ion laser for fluorescence and a light stabilized 670 nm forward scatter laser for extinction and time-of-flight. It has filters and PMTs for 3 fluorescent parameters and photodiodes for scatter, time of flight, and extinction. The flow cell is quartz cuvette. The BioSorterTM 1000 is an instrument for analyzing and sorting objects from 200-600 microns in diameter.	http://www.unionbio.com/products/BioSorter.html	BioSorter 1000 at TSRI Flow Cytometry Core Facility	John Quinn						flow cytometer sorter					
OBI:0400015	BioSorter2000	BioSorter2000	ready for release		A BioSorter2000 is a sorter manufactured by Union Biometrica. It includes analog electronics, 488/514 nm multi-line Argon-ion laser for fluorescence and a light stabilized 670 nm forward scatter laser for extinction and time-of-flight. It has filters and PMTs for 3 fluorescent parameters and photodiodes for scatter, time of flight, and extinction. The flow cell is quartz cuvette. The BioSorterTM 2000 is an instrument for analyzing and sorting objects from 500 microns to 1.5 millimeters in diameter.	http://www.unionbio.com/products/BioSorter.html	BioSorter 2000 at TSRI Flow Cytometry Core Facility	John Quinn						flow cytometer sorter					
OBI:0400016	BioSorter250	BioSorter250	ready for release		A BioSorter250 is a flow_cytometer_sorter manufactured by Union Biometrica. It includes analog electronics, 488/514 nm multi-line Argon-ion laser for fluorescence and a light stabilized 670 nm forward scatter laser for extinction and time-of-flight. It has filters and PMTs for 3 fluorescent parameters and photodiodes for scatter, time of flight, and extinction. The flow cell is quartz cuvette. The BioSorterTM 250 is an instrument for analyzing and sorting objects from 40-200 microns in diameter.	http://www.unionbio.com/products/BioSorter.html	BioSorter 250 at TSRI Flow Cytometry Core Facility	John Quinn						flow cytometer sorter					
OBI:0400017	BioSorter500	BioSorter500	ready for release		A BioSorter500 is a flow_cytometer_sorter manufactured by Union Biometrica. It includes analog electronics, 488/514 nm multi-line Argon-ion laser for fluorescence and a light stabilized 670 nm forward scatter laser for extinction and time-of-flight. It has filters and PMTs for 3 fluorescent parameters and photodiodes for scatter, time of flight, and extinction. The flow cell is quartz cuvette. The BioSorterTM 500 is an instrument for analyzing and sorting objects from 100-250 microns in diameter and less than 2mm in length.	http://www.unionbio.com/products/BioSorter.html	BioSorter 500 at TSRI Flow Cytometry Core Facility	John Quinn						flow cytometer sorter					
OBI:0400018	Cell Lab Quanta SC	Cell Lab Quanta SC	ready for release		A Cell Lab Quanta SC is a flow_cytometer_analyser manufactured by Becman Coulter. It features a mercury arc lamp optimized at 366, 405, and 435 nm, and a 488 nm laser diode. It has filters and PMTs to collect up to 3 fluorescent parameters, and a photodiode for side scatter detection. This cytometer uses Couter-Volume for cell size measurements. The Cell Lab Quanta SC can be used for measuring the properties of individual cells.	http://www.beckmancoulter.com/cell-lab		John Quinn						flow cytometer analyzer					
OBI:0400019	charge plate	charge plate	metadata incomplete		Part of the fluidics subsystem. Charge plates are used or sorters. They create an charged electric field when particles deemed to be desired for further analysis are shaken form the piexo electric crystal. The charged particles are drawn toward the charged plate, and the altered drop location causes the particles to fall into a collection tube. Charge plates enable sorting.	Practical Flow Cytometry 4th Edition, Howard Shapiro, ISBN-10: 0471411256, ISBN-13: 978-0471411253	LSR2 charge plate	John Quinn						device	transfer function|excitation function				
OBI:0400020	cell sorter collection tube	cell sorter collection tube	metadata incomplete		Part of the fluidics subsystem. The collection tube is a vessel for capturing cells of interest that have been identified by a sorter. The collection tube is the end location of sorted cells.	Practical Flow Cytometry 4th Edition, Howard Shapiro, ISBN-10: 0471411256, ISBN-13: 978-0471411253	LSR2 collection tube	John Quinn						test tube					
OBI:0400022	Cyan	Cyan	ready for release		A Cyan is a flow_cytometer_analyser manufactured by Dako Cytomation. It features include digital electronics, three lasers: 488 nm, 635 nm, and 405 nm, and filters and collectors for nine fluorescent parameters and two scatter parameters. The Cyan can be used for measuring the properties of individual cells.	http://www.dakousa.com/prod_productrelatedinformation?url=gprod_cyan_index.htm		John Quinn						flow cytometer analyzer					
OBI:0400023	CYFlow ML	CYFlow ML	ready for release		A CyFlow_ML is a flow_cytometer_analyser manufactured by Partec. It is a digital machine which uses 4 light sources: triple laser configurations including new powerful 200mW@488nm blue solid state laser + 100W UV lamp for highest resolution DNA analysis, and can collect 16 optical parameters: FSC1, FSC2, SSC, FL1-FL13. Ultracompact high end desktop multilaser Flow Cytometer for all applications in cell analysis and absolute counting.	http://www.partec.de/products/cyflow-ml.html		John Quinn						flow cytometer analyzer					
OBI:0400024	CyFlow SL	CyFlow SL	ready for release		a flow_cytometer_analyser manufactured by Partec. Its specs are: ultracompact and fully equipped mobile/portable instrument, dimensions [cm]: L 43 x H 16 x D 37, highest stability/robustness and highest precision, 5 optical parameters: FSC, SSC, FL-1, FL-2, FL-3, 20mW@488nm blue solid state laser , other laser light sources optional (UV, violet, green, red), WindowsTM XP FloMax (software for real time data acquisition, data display, and data evaluation), parallel 16 bit digital pulse processing Compact mobile Flow Cytometer for any kind of cell analysis and absolute volumetric counting. The CyFlow_SL allows to analyze forward and side scatter signals in combination with up to 3 fluorescence channels.	http://www.partec.de/products/cyflow.html		John Quinn						flow cytometer analyzer					
OBI:0400025	CyFlow SL3	CyFlow SL3	ready for release		A CyFlow_Sl3 is a flow_cytometer_analyser manufactured by Partec. Its specs are: ultracompact and fully equipped mobile/portable instrument, dimensions [cm]: L 43 x H 16 x D 37 , highest stability/robustness and highest precision, 5 optical parameters: FSC, SSC, FL-1, FL-2, FL-3, 20mW@488nm blue solid state laser, other laser light sources optional (UV, violet, green, red), WindowsTM XP FloMax (software for real time data acquisition, data display, and data evaluation), parallel 16 bit digital pulse processing. The CyFlow SL3 is a compact and dedicated portable Flow Cytometer for accurate and affordable cell analysis and true volumetric absolute counting in HIV Monitoring and AIDS patient follow-up by precise and direct CD4 and CD4% measurement.	http://www.partec.de/products/cyflowsl3.html		John Quinn						flow cytometer analyzer					
OBI:0400026	CyFlow Space	CyFlow Space	ready for release		A CyFlow_Space is a flow_cytometer_sorter manufactured by Partec. Its specs are: 8optical parameters, 6 colours:FSC, SSC, FL1-FL6 , 3laser light sources: 200mW@488nm blue solid state laser 25mW@635nm red diode laser 50mW@405nm violet or 8mW@375nm ultraviolet diode laser _ultracompact desktop high end instrument. Parallel 16bit digital pulse processing. The CyFlow Space is a 6-Colour FCM System and Cell Sorter for Clinical Routine and Research.	http://www.partec.de/products/cyflowspace.html	CyFlow Space at TSRI Flow Cytometry Core Facility	John Quinn						flow cytometer sorter					
OBI:0400027	CytoBuoy flow cytometer analyzer	CytoBuoy	ready for release		A flow cytometer analyser which is manufactured by Cyto Buoy Inc. They are the buoy mounted version of the CytoSense, equipped with wireless transmission of control and data files. They are a single laser, multi parameter instrument. Various types of micro-laser are offered; available measuring parameters are forward light scatter, side scatter, and fluorescence (max. 9 colour bands). The current series have 5 parameters.	http://www.cytobuoy.com/	CytoBuoy can be used to conduct extended and/or high frequency time series of phytoplankton distribution and abundance on fixed locations	John Quinn, Melanie Courtot						flow cytometer analyzer				CytoBuoy	
OBI:0400028	CytoSence	CytoSence	ready for release		A CytoSense is a flow_cytometer_analyser manufactured by Cyto Buoy Inc. They are a single laser, multi parameter instrument. Various types of micro-laser are offered; available measuring parameters are forward light scatter, side scatter, and fluorescence (max. 9 colour bands). The current series have 5 parameters. The CytoSense is the basic instrument, which can be used for normal laboratory applications, as well as for autonomous monitoring with internal data logging or direct data transmission. The special instrument design and its splashproof housing allow operation on moving platforms and outdoor sites.	http://www.cytobuoy.com/		John Quinn						flow cytometer analyzer					
OBI:0400029	CytoSub	CytoSub	ready for release		A CytoSub is a flow_cytometer_analyser manufactured by Cyto Buoy Inc. They are a single laser, multi parameter instrument. Various types of micro-laser are offered; available measuring parameters are forward light scatter, side scatter, and fluorescence (max. 9 colour bands). The current series have 5 parameters. The CytoSub is the submersible version equipped with a high pressure sample inlet loop and a high pressure housing to allow underwater operation down to 200 m, lowered on a cable or mounted on a flooded underwater vehicle.	http://www.cytobuoy.com/		John Quinn						flow cytometer analyzer					
OBI:0400030	dichroic filter	dichroic filter	metadata incomplete		A dichroic filter is an optical filter which is used to selectively pass light of a small range of colors while reflecting other colors. A dichroic filter passes the specified range of light whereas a dichroic mirror reflects the specified range of light.	http://en.wikipedia.org/wiki/Dichroic_filter	Cy3 Dichroic Filter	John Quinn						optical filter					
OBI:0400031	dichroic mirror	dichroic mirror	metadata incomplete		A dichroic mirror is an optical filter which is used to selectively reflect light of a small range of colors while passing other colors. A dichroic filter passes the specified range of light whereas a dichroic mirror reflects the specified range of light.	http://en.wikipedia.org/wiki/Dichroic_mirror	ViewLux Alexa 594 dichroic mirror	John Quinn						optical filter					
OBI:0400032	differential pressure gauge	differential pressure gauge	metadata incomplete		Part of the fluidics subsystem. The differential pressure gauge monitors the difference between sample and sheath fluid pressures in systems where pressure is used to force the sample fluid to flow in the center of the sheath fluid. A differential pressure gauge can be used by the operator to make sure that the sample fluid is at a greater pressure than the sheath fluid, which maintains a core of sample fluid.	Practical Flow Cytometry 4th Edition, Howard Shapiro, ISBN-10: 0471411256, ISBN-13: 978-0471411253	LSR2 differential pressure gauge	John Quinn						device	measure function				
OBI:0400033	diode laser	diode laser	metadata incomplete		A diode laser is a laser in which the active medium is a p-n junction semiconductor laser diode, similar to that found in a light-emitting diode. Laser diodes emit at wavelengths from 375 nm to 1800 nm, and wavelengths of over 3 micrometer have been demonstrated. A diode laser can by used to irradiate cells in a flow cytometer.	John Quinn	FAX-RS3-H0 diode laser manufactured by Diode Laser Concepts, Inc.	Daniel Schober						laser					
OBI:0400034	dye laser	dye laser	metadata incomplete		A dye laser is a laser in which the lasing medium is a fluorescent dye, usually dissolved in an organic solvent such as ethanol or ethylene glycol. The particular dye used determines the wavelengths the laser can emit. The laser medium is places between two parallel mirrors for light emission amplification.	Practical Flow Cytometry 4th Edition, Howard Shapiro, ISBN-10: 0471411256, ISBN-13: 978-0471411253|John Quinn	Rhodamine 101 dye laser used to irradiate cells in a flow cytometer.	Daniel Schober						laser					
OBI:0400036	FACS Calibur	FACS Calibur	metadata incomplete		The FACS Calibur is one of the most popular cytometers in use for research.	http://www.bdbiosciences.com/immunocytometry_systems/products/display_product.php?keyID=45, 2007-05-11	FACS Calibur at TFL, BCCRC, Vancouver	John Quinn						flow cytometer sorter					
OBI:0400037	FACS Canto	FACS Canto	ready for release		A FACS_Canto is a flow_cytometer_analyser manufactured by Becton Dickinson. It features digital electronics, a solid state 488 nm, and a HeNe 633 nm lasers, and filters and PMTs for collecting up to 6 fluorescent parameters. The FACS_Canto is an analyser usually used in clinical applications.	http://www.bdbiosciences.com/pdfs/brochures/23-8742-00.pdf		John Quinn						flow cytometer analyzer					
OBI:0400038	FACS Canto2	FACS Canto2	ready for release		A FACS_Canto2 is a flow_cytometer_analyser manufactured by BD. It features digital electronics, two solid state lasers at 488 and 633 nm with the option for a third 405 nm laser, and filters and collectors for measuring up to 8 fluorescent paramters with either the 2 or 3 laser option. The FACS_Canto2 is an analyser usually used in clinical applications.	http://www.bdbiosciences.com/cgi-bin/literature/view?part_num=23-8786-01		John Quinn						flow cytometer analyzer					
OBI:0400039	FACS Scan	FACS Scan	ready for release		A FACS_Scan is a flow_cytometer_analyser manufactured by Becton Dickinson. IT features analog electronics, one 488 nm solid state laser, and the filters and PMTs to collect up to three fluorescent parameters The FACS_Scan is usually used for research applications.	http://www.brc.ubc.ca/brc/facs.html		John Quinn						flow cytometer analyzer					
OBI:0400040	FACSAria	FACSAria	ready for release		A FASCSAria is a flow_cytometer_sorter manufactured by Becton Dickinson. It features digital electronics, a solid state 488 nm blue laser, a solid state 407 nm violet laser, and a HeNe (633 nm) ion laser. The Aria has the filters and PMTs to collect side scatter and 9 fluorescent parameters. The Aria has a photodiode detector for forward scatter collector. The flow cell is Quartz cuvette. The FACSAria is a sorter used to collect and analyse cells using up to 11 parameters.	http://www.bdbiosciences.com/external_files/is/doc/mkt_lit/brochures/SJ-0003-00Aria.pdf	FACSAria at TSRI Flow Cytometry Core Facility	John Quinn						flow cytometer sorter					
OBI:0400041	FACSvantage	FACSvantage	ready for release		The FACSvantage is a flow_cytometer_sorter manufactured by Becton Dickinson. It has analog electronics, three lasers (several options are available), and the filters and PMTs to collect 6 fluorescent parameters and side scatter, and a photodiode to collect forward scatter. The FACSvantage can be used to analyse, sort and collect cells.	http://www.bdbiosciences.com/features/products/display_product.php?keyID=42	FACSvantage at TSRI Flow Cytometry Core Facility	John Quinn						flow cytometer sorter					
OBI:0400042	FC 500	FC 500	ready for release		A FC_500 is a flow_cytometer_analyser manufactured by Beckman Coulter. It features digital electronics, 488 nm and 635 nm lasers, filters and PMTs for 5 fluorescent parameters, a diode for collecting side scatter and a solid state detector for forward scatter. The FC 500 is an analyser usually used for either research or clinical applications.	http://www.beckmancoulter.com/products/instrument/flowcytometry/fc500series.asp		John Quinn						flow cytometer analyzer					
OBI:0400043	flow cell	flow cell	metadata incomplete	flow_cell	Aparatus in the fluidic subsystem where the sheath and sample meet. Can be one of several types; jet-in-air, quartz cuvette, or a hybrid of the two. The sample flows through the center of a fluid column of sheath fluid in the flow cell.	http://www.flocyte.com/FRTP/Resources/flow_cytometry_glossary.htm	Biofilm Flow Cell	Person:John Quinn						device	contain function				
OBI:0400044	flow cytometer	flow cytometer	ready for release		A flow_cytometer is an instrument for counting, examining and sorting microscopic particles in suspension. It allows simultaneous multiparametric analysis of the physical and/or chemical characteristics of single cells flowing through an optical and/or electronic detection apparatus. A flow cytometer is an instrument that can be used to quantitatively measure the properties of individual cells in a flowing medium.	http://en.wikipedia.org/wiki/Flow_cytometer	FACS Calibur	John Quinn						cytometer		droplet sorter|obscuration bar|flow cell|light source|optical filter|photodetector			
OBI:0400045	fluid pressure regulator	fluid pressure regulator	metadata incomplete		Part of the fluidic subsystem. The fluid pressure regulator maintains constant pressure within the sheath and or sample lines by filling the lines with enough gas to push the fluid at the desired rate. The gas is usually air, and less frequently nitrogen. In the sheath line, the gas is pushed into the sheath tank. In the sample line the gas is pushed into the collection tube. Fluid pressure regulators maintain great enough pressure to push sample fluid out of the tube and sheath fluid out of the sheath tank.	Practical Flow Cytometry 4th Edition, Howard Shapiro, ISBN-10: 0471411256, ISBN-13: 978-0471411253	LSR2 fluid pressure regulator	Person: John Quinn						device	environment control function|measure function				
OBI:0400047	gas laser	gas laser	metadata incomplete		A gas laser is a laser in which the lasing medium is a gas. The laser medium is places between two parallel mirrors for light emission amplification. The gas is excited to emit light via an external light source or an electric current discharging through the gas.	http://en.wikipedia.org/wiki/Gas_laser|John Quinn	helium-neon gas laser used to erradiate cells in a flow cytometer.	Daniel Schober						laser					
OBI:0400048	Guava EasyCyte Mini	Guava EasyCyte Mini	ready for release		A Guava_EasyCyte_Mini is a flow_cytometer_analyser that includes a single 488 nm laser, and filters and PMTs to collect up to 3 fluorescent parameters. It includes a photodiode forward scatter collector and an optional photodiode for side scatter collection.Guava cytometers use aspiration instead of fluid systems to transport cells within the machine. The mini accepts tubes only for inputting cells or beads. The Guava_EasyCyte_Mini cytometer is a small portable cytometer particularly useful for field measurement.	http://www.guavatechnologies.com/main/products/easyCyteMini.cfm		John Quinn						flow cytometer analyzer					
OBI:0400049	Guava EasyCyte Plus	Guava EasyCyte Plus	ready for release		A Guava_EasyCyte_Plus System is a flow_cytometer_analyser that includes a single 488 nm laser, and filters and PMTs to collect up to 4 fluorescent parameters. It includes a photodiode forward scatter collector and an optional photodiode for side scatter collection.Guava cytometers use aspiration instead of fluid systems to transport cells within the machine. The EasyCyte plus accepts 96 well plates as well as tubes. The Guava_EasyCyte_Plus cytometer is a small portable cytometer particularly useful for field measurement.	http://www.guavatechnologies.com/main/products/easycyte-new.cfm		John Quinn						flow cytometer analyzer					
OBI:0400050	Guava Personal Cell Analysis	Guava Personal Cell Analysis	ready for release	Guava_PCA	A  Guava_Personal_Cell_Analysis System is a flow_cytometer_analyser that includes a single 532 nm laser, and filters and PMTs to collect up to 2 fluorescent parameters. It includes a photodiode forward scatter collector. Guava cytometers use aspiration instead of fluid systems to transport cells within the machine. The PCA96 uses only tubes to introduce specimen. The Guava PCA cytometer is a small portable cytometer particularly useful for field measurement.	http://www.guavatechnologies.com/main/products/PCA-new.cfm		John Quinn						flow cytometer analyzer					
OBI:0400051	Guava Personal Cell Analysis-96	Guava Personal Cell Analysis-96	ready for release	Guava_PCA-96	The Guava_Personal_Cell_Analysis-96 Systems is a flow_cytometer_analyser that includes a single 532 nm laser, and filters and PMTs to collect up to 2 fluorescent parameters. It includes a photodiode forward scatter collector. Guava cytometers use aspiration instead of fluid systems to transport cells within the machine. The PCA96 uses either tubes or 96 well plates to introduce specimen. The Guava PCA -96 cytometer is a small portable cytometer particularly useful for field measurement.	http://www.guavatechnologies.com/main/products/PCA-96new.cfm		John Quinn						flow cytometer analyzer					
OBI:0400052	helium cadmium ion laser	helium cadmium ion laser	metadata incomplete		A helium-cadmium laser is a metal vapor laser that emits wavelengths of 442, 325 and 354 nms. This laser is a metal vapor laser. A helium-cadmium laser can by used to irradiate cells in a flow cytometer.	http://en.wikipedia.org/wiki/Laser#Gas_lasers	KIMMON HeCd 325nm laser	John Quinn						metal vapor laser					
OBI:0400053	helium neon ion laser	helium neon ion laser	metadata incomplete		A helium-neon laser (HeNe) is an ion laser that uses helium and neon gas-ions as lasing medium. HeNe lasers emit at 543 nm and 633 nm most commonly and can also be used at 543, 594, and 611 nm.	John Quinn|http://en.wikipedia.org/wiki/Laser#Gas_lasers	A helium neon laser can by used to irradiate cells in a flow cytometer.	Daniel Schober						ion laser					
OBI:0400054	Amnis ImageStream	Amnis ImageStream	ready for release		The ImageStream is a multispectral_imaging_flow_cytometer manufactured by Amnis. Its has digital electronics, a single standard 488 nm solid state laser. In addition an optional 658 nm and your choice of either a 405 nm or 375 nm solid state laser can be added. Information is collected using cameras. The ImageStream system CCD camera produces six images of each cell, including darkfield, brightfield, and up to four fluorescent colors. Each image is used to calculate over 40 features, so a six-image assay results in ~250 morphometric and photometric features per cell. The ImageStream is a flow cytometer that takes pictures of the cells in flow. It has both components, an Image cytometer and a flow cytometer.	http://www.amnis.com/		John Quinn|Melanie Courtot	It has both components, an Image cytometer and a flow cytometer.					multispectral imaging flow cytometer		image cytometer|flow cytometer			
OBI:0400055	inFlux Analyzer	inFlux Analyzer	ready for release		The inFlux Analyzer is a flow_cytometer_analyser manufactured by Cytopeia. It is a digital machine, with these laser options: Coherent 70, 90, 300 series water cooled lasers, solid state UV 355nm, Violet 408nm, Violet-Blue 479nm, Blue-488nm, Green-531nm, Red-635nm, Red-647nm. Filters and PMTs are used for all parameters (including forward light scatter), and up to 12 PMTs can be included. The Influx analyser can be used to measure the properties of individual cells.	http://www.cytopeia.com/analyzer.htm		John Quinn						flow cytometer analyzer					
OBI:0400056	Influx Cell Sorter	Influx Cell Sorter	ready for release		A Influx Cell Sorter is a flow_cytometer_sorter manufactured by Cytopeia. It is a digital machine, with these laser options: Coherent 70, 90, 300 series water cooled lasers, solid state UV 355nm, Violet 408nm, Violet-Blue 479nm, Blue-488nm, Green-531nm, Red-635nm, Red-647nm. The sorting is multi-way, index, and proportional sorting. Filters and PMTs are used for all parameters (including forward light scatter), and up to 12 PMTs can be included. The Influx cell sorter can be used to measure, sort, and collect ndividual cells.	http://www.cytopeia.com/sorter.htm	Influx Cell Sorter at TSRI Flow Cytometry Core Facility	John Quinn						flow cytometer sorter					
OBI:0400060	ion laser	ion laser	metadata incomplete		An ion laser is a gas laser which uses an ionized gas as its lasing medium.	http://en.wikipedia.org/wiki/Ion_laser|John Quinn	2 Watt Lexel 88 Argon Ion laser	Daniel Schober						gas laser					
OBI:0400062	krypton ion laser	krypton ion laser	metadata incomplete		A krypton-ion laser is an ion laser that uses krypton as the lasing medium. These lasers can emit at 468, 476, 482, 520, 531, 568, 647 (the most powerful line), and 676 nm all at once. They have much lower gain than argon lasers however.	John Quinn	Lexel 95L krypton laser	Daniel Schober						ion laser					
OBI:0400063	LactoScope C4	LactoScope C4	ready for release		A LactoScope_C4 is a spectrophotometer with which the composition of milk and milk products is analysed via infrared technology. The LactoScope determines the amount of the constituents fat, protein, lactose and the total solids content with extreme accuracy.	http://www.aicompanies.com/DeltaCD/lacto_ftir_auto.htm	LactoScope C4 Automatic Economical	Melanie Courtot|Josef Spidlen						spectrophotometer					
OBI:0400064	laser	laser	metadata incomplete	light amplification by the stimulated emission of radiation	A laser (acronym for light amplification by the stimulated emission of radiation) is a light source that emits photons of the same characteristics in a coherent beam. A laser uses a solid, liquid or gaseous lasing medium, that contains molecules, of which some atoms have electrons that emit photons of the same frequency when falling back to their normal orbital after excitation (pumping) by external means A laser is the most common way to irradiate a cell in a flow cytometer.	http://en.wikipedia.org/wiki/Laser|John Quinn	A laser is the most common way to irradiate a cell in a flow cytometer.	Daniel Schober						light source					
OBI:0400065	light source	light source	metadata incomplete		A light source is an optical subsystem that provides light for use in a distant area using a delivery system (e.g., fiber optics). Light sources may include one of a variety of lamps (e.g., xenon, halogen, mercury). Most light sources are operated from line power, but some may be powered from batteries. They are mostly used in endoscopic, microscopic, and other examination and/or in surgical procedures. The light source is part of the optical subsystem. In a flow cytometer the light source directs high intensity light at particles at the interrogation point. The light source in a flow cytometer is usually a laser.	Practical Flow Cytometry 4th Edition, Howard Shapiro, ISBN-10: 0471411256, ISBN-13: 978-0471411253		John Quinn|Elizabeth M. Goralczyk|Olga Tchuvatkina						device	light emission function				
OBI:0400066	logarithmic voltage amplifier	logarithmic voltage amplifier	metadata incomplete		A logarithmic voltage amplifier is an analog electronic circuit that puts out a voltage or current proportional to the voltage or current at its input, with logarithmic proportionality. In an analog system, the logarithmic voltage amplifier is used to present parameters with a high dynamic range on a more useful scale.	Practical Flow Cytometry 4th Edition, Howard Shapiro, ISBN-10: 0471411256, ISBN-13: 978-0471411253	HLVA-100 logarithmic voltage amplifier developed by FEMTO Messtechnik, GmbH	John Quinn						voltage amplifier					
OBI:0400067	long pass filter	long pass filter	metadata incomplete		A long pass filter is an optical filter that passes high wavelengths of light but attenuates (or reduces) wavelengths lower than the cutoff frequency. A long pass filter with a cutoff of 500 nm would pass all wavelengths greater than 500 nm.	http://en.wikipedia.org/wiki/high-pass_filter	750 LP filter	John Quinn						optical filter					
OBI:0400068	LSR2	LSR2	ready for release		A LSR2 is a sorter manufactured by Becton Dickinson. It features digital electronics, a solid state 488 nm blue laser and optionally can also have any combination of solid state UV (355 nm) and violet (405 nm) lasers and the a HeNe (633 nm) ion laser. The LSR2 has the filters and PMTs to work with 13 fluorescent parameters. The LSR II is one of the most common sorters in use.	http://www.bdbiosciences.com/external_files/is/doc/mkt_lit/brochures/live/web_enabled/SJ-0142-00LSR2.pdf	LSR2 at TSRI Flow Cytometry Core Facility	John Quinn						flow cytometer sorter					
OBI:0400069	Luminex 100	Luminex 100	ready for release		The Luminex 100 is a flow_cytometer_analyser manufactured by Luminex. It is a single laser system (575 nm) with avalanche photodiodes in red and infrared and a single PMT for fluorescence. The flow chamber is a square quartz cuvette.	http://www.luminexcorp.com/products/luminex_100IS.html		John Quinn						flow cytometer analyzer					
OBI:0400070	Luminex 200	Luminex 200	ready for release		A Luminex_200 is a flow_cytometer_analyser manufactured by Luminex. The optical specifications are: Reporter laser: 532 nm, nominal output 10 - 15 mW, maximum 500 mW, frequency-doubled diode; mode of operation, continuous wave (CW). Classification laser: 635 nm, 9.1 __ 6%, maximum output 25 mW, diode; mode of operation, continuous wave (CW) Reporter detector: Photomultiplier tube, detection bandwidth of 565 - 585 nm Classification detector and doublet discriminator: Avalanche photo diodes with temperature compensation	http://www.luminexcorp.com/support/faqs.html		John Quinn						flow cytometer analyzer					
OBI:0400071	MACS Quant	MACS Quant	ready for release		A MACS Quant is a flow_cytometer_analyser manufactured by Miltenyi. It uses digital electronics, and has three lasers of wavelengths 405 nm, 488 nm, and 635 nm. It has filters and detectors to collect 7 fluorescent parameters and 2 scatter parameters. The MACS Quant is an analyser usually used in research applications.	http://www.miltenyi.com		John Quinn						flow cytometer analyzer					
OBI:0400073	metal vapor laser	metal vapor laser	metadata incomplete		A metal vapor laser is a gas laser in which the lasing medium is metal vapor. A metal vapor laser can by used to irradiate cells in a flow cytometer.	Practical Flow Cytometry 4th Edition, Howard Shapiro, ISBN-10: 0471411256, ISBN-13: 978-0471411253	Gold vapor laser, Helium-cadmium metal-vapor laser	John Quinn						gas laser					
OBI:0400074	mixed argon-krypton gas laser	mixed argon-krypton gas laser	metadata incomplete		A mixed argon krypton gas laser is an ion laser in which the lasing medium is a mixture of argon and krypton. A mixed argon-krypton laser can by used to irradiate cells in a flow cytometer.	http://www.eio.com/repairfaq/sam/laserarg.htm	argon-krypton laser in a cytometer	John Quinn						ion laser					
OBI:0400075	MoFlo	MoFlo	ready for release		A MoFlo is a flow_cytometer_sorter manufactured by Dako Cytomation. It features digital electronics, the option to include several lasers (solid state 488 nm, 635 nm, and a 351 nm diode laser), and has the filtering and collection capacity for up to 10 flouresecent parameters. The MoFlo is an instrument that can be used to both analyze quantitatively and collect cells in a flowing medium.	http://www.dakousa.com/index/prod_search/prod_groups.htm?productareaid=16	MoFlo at TSRI Flow Cytometry Core Facility	John Quinn						flow cytometer sorter					
OBI:0400077	neodymium-YAG laser	neodymium-YAG laser	metadata incomplete		A Neodymium-YAG (yttrium aluminum garnet) laser is a solid state laser in which the lasing medium is a solid rod of crystalline material pumped by a flash lamp or a diode laser. Typical output wavelengths are 355, 532, and 1064 nm. A neodymium-YAG laser can by used to irradiate cells in a flow cytometer.	John Quinn	Neodymium-YAG Laser in DURIP99 System	Daniel Schober						solid state laser					
OBI:0400078	obscuration bar	obscuration bar	metadata incomplete		An obscuration bar is a an optical subsystem which is a strip of metal or other material that serves to block out direct light from the illuminating beam. The obscuration bar prevents the bright light scattered in the forward directions from burning out the collection device.	John Quinn|Flow Cytometry: First Principles, by Alice Longobardi Givan, ISBN-10: 0471382248, ISBN-13: 978-0471382249	obscuration bar in a flow cytometer	Daniel Schober						device	filter function				
OBI:0400079	optical filter	optical filter	metadata incomplete		An optical filter is an optical subsystem that selectively transmits light having certain properties (often, a particular range of wavelengths, that is, range of colours of light), while blocking the remainder. They are commonly used in photography, in many optical instruments, and to colour stage lighting Optical filters can be arranged to segregate and collect light by wave length.	http://en.wikipedia.org/wiki/Optical_filter	720 LP filter, 580/30 BP filter	John Quinn						device	filter function				
OBI:0400080	optical subsystem	optical subsystem	metadata incomplete		A device or part of a device that deals with the behavior and properties of light and the interaction of light with matter. Commonly optical subsystems consist of an excitation optics and collection optics. The excitation optics of a flow cytometer optical subsystem consist of the laser and lenses that are used to shape and focus the laser beam. The collections optics consist of a collection lens to collect light emitted from the particle laser beam interaction and a system of optical mirrors and filters to route specified wavelengths of the collected light to designated optical detectors. The optical subsystem in a flow cytometer consists of the equipment used to irradiate particles, and collect the light either emitted or scattered by those particles.	John Quinn	optical subsystem of a cytometer	Person: Daniel Schober	DS: Is 'subsystem' necessary or is 'optical_system' enough. Not sure its graph position since an optical subsystem is not necessarily an instrument, but more likely part of one.					device		obscuration bar|light source|optical filter			
OBI:0400082	photodetector	photodetector	metadata incomplete		A photodetector is a device used to detect and measure the intensity of radiant energy through photoelectric action. In a cytometer, photodetectors measure either the number of photons of laser light scattered on impact with a cell (for example), or the flourescence emitted by excitation of a fluorescent dye.	http://einstein.stanford.edu/content/glossary/glossary.html	A photomultiplier tube, a photo diode	John Quinn						device	measure function				
OBI:0400083	photodiode	photodiode	metadata incomplete		A photodiode is a semiconductor photodetector used to detect light and generate an electrical current. Typically used in forward scatter (FSC) detection. The photodiode collects the forward light scatter in a cytometer.	http://cyto.mednet.ucla.edu/Protocols/flow.htm	Avalanche photodiode	John Quinn						photodetector					
OBI:0400084	photomultiplier tube	photomultiplier tube	metadata incomplete		A photomultiplier is a device that is normally in the form of a tube, that uses a photocathode to convert photons into photoelectrons which are then amplified. PMTs are typically used to detect SSC and fluorescent parameters. Cytometers have a PMT for each color they can collect.	http://cyto.mednet.ucla.edu/Protocols/flow.htm	R9647 by manufactured by Hamamatsu	John Quinn						device	contain function|signal amplification function|measure function				
OBI:0400086	plate loader	plate loader	metadata incomplete		Part of the fluidics system. A plate loader positions the wells of a multi-well plate under the aspiration tube is a preset order. A plate loader is used for high throughput applications.	http://www.beckmancoulter.com/literature/Bioresearch/P-10202A.pdf	FC 500 plate loader	John Quinn	measurement function is not corret as discussed on April 26 dev call. Will add new function such as positioning function. Add to tracker will discuss in the future.					device	transfer function				
OBI:0400087	preamplifier	preamplifier	metadata incomplete		A preamplifier is part of the electronics subsystem. It converts the current output from its associated detector to a voltage. The preamplifier is the first stage in analog electronics signal processing.	Practical Flow Cytometry 4th Edition, Howard Shapiro, ISBN-10: 0471411256, ISBN-13: 978-0471411253	Built in preamplifier in a Hamamatsu H9656 PMT	John Quinn						voltage amplifier					
OBI:0400088	quartz cuvette flow chamber	quartz cuvette flow chamber	metadata incomplete		A flow cell in which the laser irradiates the cell as it passes through a quartz cuvette. A quartz cuvette flow chamber can be used to allow the laser to irradiate cells.	http://www.flocyte.com/FRTP/Resources/flow_cytometry_glossary.htm	CVF-Q-10 flow chamber, CV-Q-10 flow chamber	John Quinn						flow cell					
OBI:0400089	Reflection	Reflection	ready for release		A Reflection is a sorter manufactured by iCyte. It uses digital signal processing, and can be configured with lasers of the users choice from among these excitation wavelengths: 355, 405,488, 532, 635nm. It accommodates up to 48 traditional PMTs. Options include an acousto-optical tunable filter (AOTF) and 16 channel spectrometer (370 to 730 nm). The various detection components can be uniquely configured across multiple Highly Automated Parallel Sorting (HAPS) modules. The Reflection can be used to analyse, sort, and collect cells.	http://www.i-cyt.com/reflection.htm	Reflection at TSRI Flow Cytometry Core Facility	John Quinn						flow cytometer sorter					
OBI:0400091	cytometer sample tube	cytometer sample tube	metadata incomplete		A particle delivery vessel. The cytometer sample tube is a vessel in which the sample is introduced to the cytometer. Frequently the tube is placed on the cytometer in such a manner that a seal is formed between the tube and cytometer, and gas is used to create enough pressure to push the sample out of the tube and into the cytometer.	Practical Flow Cytometry 4th Edition, Howard Shapiro, ISBN-10: 0471411256, ISBN-13: 978-0471411253	sample tube in a cytometer	John Quinn						test tube					
OBI:0400094	sheath tank	sheath tank	metadata incomplete		Part of the fluidics system. The sheath tank is the vessel that holds the sheath fluid at a constant pressure, allowing for it to be pushed into the flow chamber at a constant rate. The sheath tank holds the pressurized sheath fluid.	Practical Flow Cytometry 4th Edition, Howard Shapiro, ISBN-10: 0471411256, ISBN-13: 978-0471411253	LSR2 sheath tank	John Quinn						device	contain function|environment control function				
OBI:0400095	short pass filter	short pass filter	metadata incomplete		A short pass filter is an optical filter that passes low wavelengths of light but attenuates (or reduces) wavelengths higher than the cutoff frequency. A short pass filter with a cutoff of 500 nm would pass all wavelengths less than 500 nm.	http://en.wikipedia.org/wiki/Low-pass_filter	620 SP filter	John Quinn						optical filter					
OBI:0400096	solid state laser	solid state laser	metadata incomplete		A solid-state laser is a laser that uses a lasing medium that is a solid, rather than a liquid such as dye lasers or a gas such as gas lasers. Semiconductor-based diode lasers are also in the solid state, but are generally considered separately from solid-state lasers. The first laser developed was an optical pumped ruby crystal solid state laser.	http://en.wikipedia.org/wiki/Solid-state_laser	Solid State Heat Capacity Laser developed at DOE's Lawrence Livermore National Laboratory for the USA Army's Space and Missile Defense Command	Daniel Schober						laser					
OBI:0400097	Somacount	Somacount	ready for release		A Somacount is a flow_cytometer_analyser manufactured by Bently Instruments. It is a specialized tool for counting somatic cells in milk by specifically staining them with Ethidium Bromide and counting the cells that fluoresce. It has one laser, and the filters and a PMT for the single parameter. There are three sizes available, the 150, 300, and 500 with the number indicating the maximum number of cells that can be analysed per hour. The Somacount is an example of a very specific use cytometer; it exclusively counts somatic cells in milk.	http://www.bentleyinstruments.com/somacount.html#Anchor-Bentley-49575		John Quinn						flow cytometer analyzer					
OBI:0400098	SomaScope	SomaScope	metadata incomplete		The SomaScope is an instrument to quantify somatic cells in milk.	http://www.aicompanies.com/DeltaCD/soma_auto_adv.htm, 2007-05-10	SomaScope Mark II Automatic Economical	Josef Spidlen						flow cytometer analyzer					
OBI:0400099	flow cytometer sorter	flow cytometer sorter	ready for release		A flow_cytometer_sorter is a flow_cytometer that analyzes and separates or sorts particles passing through (based on properties measured during analysis) to collect cells of interest.	http://www.flocyte.com/FRTP/Resources/flow_cytometry_glossary.htm	BioSorter2000, LSR2	John Quinn|Melanie Courtot						flow cytometer	material separation function	droplet sorter|light source|optical filter|photodetector			
OBI:0400100	syringe pump	syringe pump	metadata incomplete		Part of the fluidics system. A syringe pump can be used to inject the sample fluid and cells into the sheath fluid in the flow chamber. Syringe pumps are useful for creating stable flow rates.	http://www.answers.com/topic/syringe, 2007-05-11	NE-1000 Single Syringe Pump	Person:John Quinn						device	transfer function|contain function				
OBI:0400101	voltage amplifier	voltage amplifier	metadata incomplete		A voltage amplifier is a device that amplifies the voltage signal.	http://en.wiktionary.org/wiki/amplifier	Linear amplifier, log amplifier, microwave amplifier	John Quinn|Frank Gibson						device	signal amplification function				
OBI:0400102	waste tank	waste tank	metadata incomplete		Part of the fluidics systems. In analyzers the sheath and sample fluid, once analyzed is dumped into a waste tank. The waste tank is where the fluids passing through the cytometer end up after the analysis is finished.	Practical Flow Cytometry 4th Edition, Howard Shapiro, ISBN-10: 0471411256, ISBN-13: 978-0471411253	LSR2 waste tank	Person:John Quinn						device	contain function				
OBI:0400103	DNA sequencer	DNA sequencer	ready for release		A DNA sequencer is an instrument that determines the order of deoxynucleotides in deoxyribonucleic acid sequences.	MO	ABI 377 DNA Sequencer, ABI 310 DNA Sequencer	Trish Whetzel						device	measure function				
OBI:0400104	array scanner	array scanner	ready for release		An processed material which acquires images of fluorescence (induced with lasers) from labeled molecules on the surface of the microarray chip	GROUP: MGED Ontology	GenePix 4200A, GenePix4000B	Trish Whetzel						device	measure function|image acquisition function				
OBI:0400105	arrayer	arrayer	metadata complete		A device which deposits biological material onto a substrate in a defined pattern.	MO_697 arrayer	BioRobotics Microgrid II TAS, Affymetrix GMS 417	Trish Whetzel						device	transfer function				
OBI:0400106	centrifuge	centrifuge	ready for release		A device with a rapidly rotating container that applies centrifugal force to its contents	http://en.wikipedia.org/wiki/Centrifuge		Trish Whetzel|Melanie Courtot|Person: Jennifer Fostel						device	measure function|('material separation function' and ('realized in' only centrifugation))	('has function' some 'contain function')			
OBI:0400107	computer	computer	ready for release		A computer is an instrument which manipulates (stores, retrieves, and processes) data according to a list of instructions.	http://en.wikipedia.org/wiki/Computer	Apple PowerBook, Dell OptiPlex	Trish Whetzel|Melanie Courtot						device	information processor function				
OBI:0400108	heating block	heating block	ready for release		A heating block is an instrument or part of an instrument which raises or maintains the temperature of a sample to a defined constant temperature during certain parts of an assay	MO	An instrument used to heat and/or maintain material at a set temperature.	Daniel Schober						device	heat function				
OBI:0400109	homogenizer	homogenizer	ready for release		A homogenizer is an instrument for the homogenization of various types of material, such as tissue, plant, food, soil, and many others.	http://en.wikipedia.org/wiki/Homogenizer	mortar, blender	Trish Whetzel|Melanie Courtot						device	perturb function				
OBI:0400110	hybridization chamber	hybridization chamber	metadata complete		A device which is used to maintain constant contact of a liquid on an array.  This can be either a glass vial or slide.	MO_563 hybridization_chamber	Glass Array Hybridization Cassette	Trish Whetzel						device	contain function|environment control function				
OBI:0400111	hybridization station	hybridization station	metadata complete		A device which is used to maintain the temperature of one or more hybridization_chamber(s) at a defined, constant temperature.	MO_497 hybridization station	Labnet Problot12	Trish Whetzel						device	environment control function	hybridization chamber			
OBI:0400112	liquid handler	liquid handler	metadata incomplete	liquid_handling_instrument	A device that is used for automated liquid transfer and handling.	MO_868 liquid_handler	Beckman BioMek 2000			DS: Is this class justified? Its a unnamed class. If so, put a fluidic_system and the fluidic_subsystem as subclasses. TW: This is required by MO. FG: Or as function.|DS: Is this class justified? Its a unnamed class. If so, put a fluidic_system and the fluidic_subsystem as subclasses. TW: This is required by MO. FG & DS: Capture as function. All: Needs to be reviewed, according to query use case. If we keep it its kept as unnamed owl class. The liquid handling class remains but as an undefined class with are unlikely to have children. It is expected that the reasoner would classifiy appropriate classes under this class that meet the have the liquid_handling function relation.				device	transfer function				
OBI:0400113	oligonucleotide synthesizer	oligonucleotide synthesizer	ready for release		An instrument used to chemically synthesize oligonucleotides.	MO	Automated Multiplex Oligonucleotide Synthesizer	Trish Whetzel						device	environment control function|synthesizing function				
OBI:0400114	sonicator	sonicator	ready for release		A device that converts a variable electrical current to mechanical vibration of a metallic probe. The device is used for the lysis of cells, the mixing of compounds or solutions, to framgent molecules of DNA, or to create emulsions.	MO	Sonicator 3000	Trish Whetzel						device	perturb function				
OBI:0400115	spectrophotometer	spectrophotometer	ready for release		A spectrophotometer is an instrument that measures the intensity of light as a function of the color, or more specifically, the wavelength of light, transmitted by a substance.	MO	Helios Gamma Spectrophotometer	Trish Whetzel|Melanie Courtot						device	measure function				
OBI:0400116	thermal cycler	thermal cycler	ready for release	DNA_amplifier|thermocycler|PCR_machine|Polymerase_Chain_Reaction_ machine	An instrument that is capable of repeatedly altering and maintaining specific temperatures for defined periods of time.	MO	Piko(tm) 96-well Thermal Cycler	Trish Whetzel|Melanie Courtot						device	contain function|environment control function				
OBI:0400117	vacuum dryer	vacuum dryer	ready for release		An instrument which removes liquid by the application of negative pressure,  i.e. vacuum.	MO	Model 777 Microarray Oven	Trish Whetzel						device	transfer function|contain function|environment control function				
OBI:0400118	vortexer	vortexer	ready for release	vortex_mixer	A vortexer is an instrument that mixes small vials of liquid by creating a rotation of the liquid around its own center. It consists of an electric motor with the drive shaft oriented vertically and attached to a cupped rubber piece mounted slightly off-center. As the motor runs the rubber piece oscillates rapidly in a circular motion. When a test tube or other appropriate container is pressed into the rubber cup (or touched to its edge) the motion is transmitted to the liquid inside and a vortex is created.	http://en.wikipedia.org/wiki/Vortex_mixer	VWR  Genie 2	Trish Whetzel|Melanie Courtot						device	perturb function				
OBI:0400119	microarray wash station	microarray wash station	metadata complete		A device that is used to wash Affymetrix-type arrays.	MO_626 wash_station	ArrayIt(r) Microarray Wash Station	Trish Whetzel						device	environment control function				
OBI:0400120	temperature control bath	temperature control bath	metadata complete		A temperature_control_bath is a device that has the function to regulate the temperature of a material, the function to contain fluid and the function to vary and maintain the temperature of the contained fluid. Heat exchange (energy transfer) between the material and the heating element is facilitated via the contained fluid. A temperature_control_bath is composed of a container, a heating element and/or a cooling element and a means to adjust the needed temperature. In most cases also a timer and a means to stir the fluid is provided as well.	OBI Instrument branch	VWR Signature Deep-Chamber Heated Water Bath. A water bath is used for temperatures up to 100 degrees C. An oil bath is employed for temperatures over 100 degrees C.	Daniel Schober|Frank Gibson|Alan Ruttenburg		DS: This was heated_bath. It was renamed to reflect the possability that the same bath can be used for cooling. We can now define the temperature variables and based on that infer if it is a cooling device or a heating device (also quite relative to surrounding temperature).				device	contain function|environment control function				
OBI:0400121	molecular crosslinker	molecular crosslinker	metadata incomplete	molecular crosslinker	A device that is able to chemically join two or more molecules.	MO ?? cannot be found in MO	Stratalinker	Trish Whetzel	AL: if we intend that other ontologies can be used in conjunction with OBI, we shouldn't have such a general term used specifically for chemically joining two or more molecules. I'm sure there are other ""crosslinkers"" that are on a much different scale in engineering etc. I have moved the original label to be an alternative term, and have renamed the main label accordingly.					device	environment control function|light emission function				
OBI:0400135	image cytometer	image cytometer	ready for release		An image_cytometer is an instrument for image-based study or measurement of cells.	http://web.mit.edu/solab/Research/ImageCytometry.html	The most common current application of image cytometry is for DNA analysis, followed by quantitation of immunohistochemical staining.	Melanie Courtot						device	image acquisition function	light source|optical filter|photodetector			
OBI:0400137	cytometer	cytometer	ready for release		A cytometer is an instrument for counting and/or measuring characteristics of cells.	http://medical.merriam-webster.com/medical/cytometer		Melanie Courtot						device	measure function	light source|optical filter|photodetector			
OBI:0400140	gel tank	gel tank	metadata incomplete	electrophoresis box|electrophoresis unit	A device which holds a gel and running buffers to allow electrophoresis to be performed. A gel tank has the function to contain and to control the contained environment and transfer energy from an energy supply through the running buffers to the gel matrix and the material with charged molecules in an electric field across a porous matrix or medium with the objective to separate the charged molecules.	sep:00095	CHEF gel box, slab gel box, capillary electrophoresis	Person:Frank Gibson|Person:Kevin Clancy						device	contain function|environment control function				
OBI:0400142	power supply	power supply	pending final vetting	PSU|electrical power supply|power supply unit|power pack	A power supply is an device or part of a device that permits the required application of a defined electrical charge to an instrument. The power supply may permit the defined application of a given amount of current for a defined length of time.	PERSON: Daniel Schober|sep:00093	A AC/DC transformer that generates the reqired power for an electrophoresis apparatus	Daniel Schober|Frank Gibson		was power_pack, maps to SEP electrical_power_supply				device	electricity supply function				
OBI:0400143	fluorometer	fluorometer	ready for release		A fluorometer is an instrument for the detection and measurement of parameters of fluoresence, which in turn are used to identify the presence and amount of specific molecules in the sample.	OBI	laser/detector in capillary electrophoresis apparatus, NanoDrop ND-3300	Allyson Lister|Kevin Lister						spectrophotometer					
OBI:0400146	multispectral imaging flow cytometer	multispectral imaging flow cytometer	ready for release	MIFC	A multispectral_imaging_flow_cytometer is an instrument which combines quantitative image analysis and flow cytometry in a single platform. It measures the amount, location and movement of molecules on, in, or between cells, and  the location and co-localization of multiple markers on or in cells. It can also quantitate morphologically distinct cell subpopulations.	http://www.amnis.com/		Melanie Courtot						device	image acquisition function|information processor function	flow cytometer			
OBI:0400147	microarray	microarray	ready for release		A processed material that is made to be used in an analyte assay. It consists of a physical immobilisation matrix in which substances that bind the analyte are placed in regular spatial position.	PERSON: Chris Stoeckert	An affymetrix U133 array is a microarray. Microarrays include 1 and 2-color arrays, custom and commercial arrays (e.g, Affymetrix, Agilent, Nimblegen, Illumina, etc.) for expression profiling, DNA variant detection, protein binding, and other genomic and functional genomic assays.	Daniel Schober						assay array					
OBI:0400148	DNA microarray	DNA microarray	metadata incomplete	DNA Chip|DNA-array	A DNA-microarray is a microarray that is used as a physical 2D immobilisation matrix for DNA sequences. DNA microarray-bound DNA fragments are used as targets for a hybridising probed sample.	Web:<http://en.wikipedia.org/wiki/DNA_microarray>@2008/03/03	Moran G, Stokes C, Thewes S, Hube B, Coleman DC, Sullivan D (2004). ""Comparative genomics using Candida albicans DNA microarrays reveals absence and divergence of virulence-associated genes in Candida dubliniensis"". Microbiology 150: 3363-3382. doi:10.1099/mic.0.27221-0. PMID 15470115	PERSON: Daniel Schober|PERSON: Frank Gibson						microarray					
OBI:0400149	protein microarray	protein microarray	metadata complete		A protein-microarray is a microarray, ususlly a piece of glass, on which different molecules of protein have been affixed at separate locations in an ordered manner. These are used to identify protein-protein or protein-small molecule interactions.	PERSON: Daniel Schober	The most common protein microarray is the antibody microarray, where antibodies are spotted onto the protein chip and are used as capture molecules to detect proteins from cell lysate solutions.	Daniel Schober						microarray					
OBI:0400153	droplet sorter	droplet sorter	metadata incomplete		A droplet sorter is part_of a flow cytometer sorter that converts the carrier fluid stream into individual droplets, and these droplets are directed into separate locations for recovery (enriching the original sample for particles of interest based on qualities determined by gating) or disposal.	OBI Instrument branch		OBI Instrument branch						device	sort function				
OBI:0400155	water bath	water bath	metadata complete		A water bath is a temperature control bath in which a water acts as contact medium enabling temperature transfer from the heating element or cooling element to the sample. The temperature can be controlled in the 0 to 100 degree centigrade range (under normal pressure).	PERSON: Daniel Schober	A water bath was used to allow for cell incubation at 38 degree centigrade for 8 hours.	Daniel Schober						temperature control bath					
OBI:0400157	oil bath	oil bath	metadata complete		An oil bath is a temperature control bath in which oil acts as contact medium for the temperature transfer (from heating or cooling elements to the sample).	PERSON: Daniel Schober	An oil bath was used to allow for fast reaction of two chemical compounds during a 2 hour period.	Daniel Schober						temperature control bath					
OBI:0400158	digital-to-analog converter	digital-to-analog converter	metadata complete		A digital-to-analog_converter is an instrument that converts a finite resolution digital signal into an infinite resolution analog signal.	PERSON: Daniel Schober	A digital-to-analog_converter is used to convert a computergenerated discrete signal into a continuous analog one, e.g. a sound.	Daniel Schober						device	signal conversion function				
OBI:0400168	microtome	microtome	pending final vetting		A microtome is a mechanical instrument used to cut biological specimens into very thin segments for further treatment (e.g. ISH) and ultimately microscopic or histologic examination. Most microtomes provide cooling facilities (cryo-microtome) and use a steel blade to cut a slice of defined thickness. Some are automatic, and some are driven by hand.	PERSON: Daniel Schober	PMID: 9974145.Serial sectioning of thick tissue with a novel vibrating blade microtome. Brain Res Brain Res Protoc. 1999 Jan;3(3):302-7.	PERSON: Phillippe Rocca-Serra						device	mechanical function|material separation function				
OBI:0400169	microscope	microscope	metadata incomplete		A microscope is an instrument which magnifies the view on objects (too small to be viewed by the naked eye) under increased resolution. A microscope can be an optical instrument but also and electronic instrument. There are various kind of optical microscopes, e.g confocal microscope, epifluoresence microscope)	wikipedia	PMID:18466942. A light and transmission electron microscope study of hepatic portal tracts in the rhesus monkey (Macacus rhesus). Tissue Cell. 2008 May 6	PERSON: Phillippe Rocca-Serra						device	magnify function|image acquisition function				
OBI:0400170	microscope slide	microscope slide	metadata incomplete		A microscope slide is a device usually made of glass which is used as a solid matrix for (biological) material deposited on its surface and which is compatible for use with a microscope instrument	OBI biomaterial branch	PMID: 9668975.Microscope slide for enhanced analysis of DNA damage using the comet assay.	PERSON: Phillippe Rocca-Serra						device	solid support function				
OBI:0400171	animal cage	animal cage	ready for release	laboratory cage	A processed material which has the function to define a bounded habitat which is amenable to keeping animals.	OBI biomaterial branch	PMID: 18246864.Barthold SW.Effects of cage density on behavior in young adult mice.	PERSON: Phillippe Rocca-Serra						device	contain function