From 3a8ddacba08251dd68dc695df7b17faaf9a8b16f Mon Sep 17 00:00:00 2001 From: Gaurav Vaidya Date: Tue, 30 Jul 2024 04:08:10 -0400 Subject: [PATCH] Fixed rootpath. --- scripts/heal/ingest.sh | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/scripts/heal/ingest.sh b/scripts/heal/ingest.sh index 8312ffb..978f72e 100644 --- a/scripts/heal/ingest.sh +++ b/scripts/heal/ingest.sh @@ -15,11 +15,11 @@ python heal/get_heal_platform_mds_data_dicts.py /data/heal # Step 2. Upload the files to BDC. echo Uploading dbGaP XML files to LakeFS -# -l: local path +# -l: local path (must end in `/`) # -r: remote path # -e: repository # -b: branch -python lakefsclient_upload.py -l "/data/heal/dbGaPs" -r "" -e "bdc-test3" -b "main" +python lakefsclient_upload.py -l "/data/heal/dbGaPs/" -r "" -e "bdc-test3" -b "main" # Report errors. echo Downloads complete at `date`.