diff --git a/Dockerfile b/Dockerfile index 49c1fd2..7760c98 100644 --- a/Dockerfile +++ b/Dockerfile @@ -2,7 +2,7 @@ FROM apache/airflow:2.7.2-python3.11 USER root RUN apt-get update && \ - apt-get install -y git nano vim + apt-get install -y git nano vim gcc COPY requirements.txt requirements.txt USER airflow RUN pip install -r requirements.txt diff --git a/dags/roger/config/config.yaml b/dags/roger/config/config.yaml index 86c95ad..c407555 100644 --- a/dags/roger/config/config.yaml +++ b/dags/roger/config/config.yaml @@ -49,7 +49,7 @@ annotation: sapbert: classification_url: "https://med-nemo.apps.renci.org/annotate/" annotator_url: "https://sap-qdrant.apps.renci.org/annotate/" - score_threshold: 0.5 + score_threshold: 0.8 bagel: enabled: false url: "http://localhost:9099/group_synonyms_openai" diff --git a/requirements.txt b/requirements.txt index 44c9a39..3a0ee22 100644 --- a/requirements.txt +++ b/requirements.txt @@ -6,7 +6,7 @@ jsonpickle redisgraph-bulk-loader==0.12.3 pytest PyYAML -git+https://github.com/helxplatform/dug@develop +git+https://github.com/helxplatform/dug@2.13.2 orjson kg-utils==0.0.6 bmt==1.1.0