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HemeKG Terminology

This repository the terminology around heme comprising terms that are not belonging to any of the standard ontologies used in the biomedical domain such as MESH or GO. Citation -------- If you find HemeKG useful in your work, please consider citing:

[1]Humayun, F., et al. (2020). A computational approach for mapping heme biology in the context of hemolytic disorders. Front. Bioeng. Biotechnol. 8:74. https://doi.org/10.3389/fbioe.2020.00074

Contents

terms.csv

List of terms in the terminology together with their identifiers, labels, descriptions, and references.

Columns:

  1. Identifier - the Heme Terminology identifier (matching regular expression HMd{5}
  2. Class Name - the entity class, referring to https://github.com/pharmacome/conso/blob/master/classes.tsv that annotates what type of entity the term is, and what BEL types it maps to.
  3. Name - the label of the term
  4. References (namespace prefixed, comma separated. Example: pmid:1234, pmid:1245, pmc:PMC1234)
  5. Description - a free text description of the term

synonyms.csv

Synonyms to the terms included in the terminology.

Columns:

  1. Identifier
  2. Synonym
  3. References (namespace prefixed, comma separated. Example: pmid:1234, pmid:1245, pmc:PMC1234)
  4. Specificity (one of EXACT, BROAD, NARROW, or RELATED. See: https://owlcollab.github.io/oboformat/doc/GO.format.obo-1_4.html)