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Publications from the Computational Neuroscience Group @ NMBU

2015

  • T.V. Ness, C. Chintaluri, J. Potworowski, S. Leski, H. Glabska, D.K. Wojcik, G.T. Einevoll: Modelling and analysis of neural electrical potentials recorded in multielectrode arrays (MEAs), Neuroinformatics (2015) (www)
  • E. Hagen, T.V. Ness, A. Khosrowshahi, C. S{\o}rensen, M. Fyhn, T. Hafting, F. Franke, G.T. Einevoll: ViSAPy: A Python tool for biophysics-based generation of virtual spiking activity for evaluation of spike-sorting algorithms, Journal of Neuroscience Methods 245:182--204 (2015) (www)

2014

  • K.H. Pettersen, H. Linden, T. Tetzlaff, G.T. Einevoll: Power laws from linear neuronal cable theory: power spectral densities of the soma potential, soma membrane current and single-neuron contribution to the EEG, PLoS Computational Biology 10:e10003928 (2014) (www)
  • B. Kriener, H. Enger, T. Tetzlaff, H.E. Plesser, M.-O. Gewaltig, G.T. Einevoll: Dynamics of self-sustained asynchronous-irregular activity in random networks of spiking neurons with strong synapses, Frontiers in Computational Neuroscience 8:136 (2014). (www)
  • V. Allken, J.-L. Chepkoech, G.T. Einevoll, G. Halnes: The subcellular distribution of T-type Ca2+ channels in interneurons of the lateral geniculate nucleus, PLoS ONE 9:e107780 (2014) (www)
  • M. L. Stavrinou, G.C. Sakellaropoulos, E. Trachani, V. Sirrou, P. Polychronopoulos, G. Nikiforidis, E. Chroni: Methodological issues in the spectral analysis of the heart rate variability: Application in patients with epilepsy, Biomedical Signal Processing and Control 13:1-7 (www)
  • N. Svanstedt, J. Wyller, and E. Malyutina: A one-population Amari model with periodic microstructure, Nonlinearity 27:1391 (2014) (www)
  • A. Chapuis and T. Tetzlaff: The variability of tidewater-glacier calving: origin of event-size and interval distributions, Journal of Glaciology 60:222 (2014) (www)
  • E. Malyutina, J. Wyller and A. Ponosov: Two bump solutions of a homogenized Wilson–Cowan model with periodic microstructure, Physica D 271:19-31 (2014). (www)
  • H. Linden, E. Hagen, S. Leski, E.S. Norheim, K.H. Pettersen, and G.T. Einevoll: LFPy: a tool for biophysical simulation of extracellular potentials generated by detailed model neurons, Frontiers in Neuroinformatics 7:41 (2014). (www)
  • B. Kriener, M. Helias, S. Rotter, M. Diesmann, and Gaute T. Einevoll: How pattern formation in ring networks of excitatory and inhibitory spiking neurons depends on the input current regime, Frontiers in Computational Neuroscience 7:187 (2014). ( www)

2013

  • G. Halnes, I. Østby, K.H. Pettersen, S.W. Omholt, and G.T. Einevoll: Electrodiffusive model for astrocytic and neuronal ion concentration dynamics, PLoS Computational Biology 9:e1003386 (2013). (www)
  • G.T. Einevoll, C. Kayser, N. Logothetis, and S. Panzeri: Modeling and analysis of local field potentials for studying the function of cortical circuits, Nature Reviews Neuroscience 14:770-785 (2013). (www)
  • T. Heiberg, B. Kriener, T. Tetzlaff, A. Casti, G.T. Einevoll, and H.E. Plesser: Firing-rate models can describe the dynamics of the retina-LGN connection, Journal of Computational Neuroscience 35:359-375 (2013). (www)
  • A. Devor, P.A. Bandettini, D.A. Boas, J.M. Bower, R.B. Buxton, L.B. Cohen, A.M. Dale, G.T. Einevoll, P.T. Fox, M.A. Franceschini, K.J. Friston, J.G. Fujimoto, M.A. Geyer, J.H. Greenberg, E. Halgren, M.S. Hamalainen, F. Helmchen, B.T. Hyman, A. Jasanoff, T.L. Jernigan, L.L. Judd, S.-G. Kim, D. Kleinfeld, N.J. Kopell, M. Kutas, K.K. Kwong, M.E. Larkum, E.H. Lo, P.J. Magistretti, J.B. Mandeville, E. Masliah, P.P. Mitra, W.C. Mobley, M.A. Moskowitz, A. Nimmerjahn, J.H. Reynolds, B.R. Rosen, B.M. Salzberg, C.B. Schaffer, G.A. Silva, P.T.C. So, N.C. Spitzer, R.B. Tootell, D.C. Van Essen, W. Vanduffel, S.A. Vinogradov, L.L. Wald, L.V. Wang, B. Weber, and A.G. Yodh: The challenge of connecting the dots in the B.R.A.I.N., Neuron 80:270-274 (2013). (www)
  • S.Leski, H. Linden, T. Tetzlaff, K.H. Pettersen, and G.T. Einevoll: Frequency dependence of signal power and spatial reach of the local field potential, PLoS Computational Biology 9:e1003137 (2013). (www)
  • M. Yousaf, B. Kriener, J. Wyller, and G.T. Einevoll: Generation and annihilation of localized persistent-activity states in a two-population neural-field model, Neural Networks 46, 75-90 (2013). (www)
  • K. Nizar, P. Tian, Q. Cheng, P. Saisan, H. Uhlirova, L. Reznichenko, K. Weldy, V. Sridhar, T. Steed, C.L. McDonald, J. Cui, S. Sakadzic, D.A. Boas, T. Beka, G.T. Einevoll, J. Chen, E. Masliah, A.M. Dale, G.A. Silva, and A. Devor: In vivo stimulus-induced vasodilation occurs without IP3 receptor activation and may precede astrocytic calcium increase, Journal of Neuroscience 33:8411-8422 (2013). (www)
  • S.L. Gratiy, K.H. Pettersen, G.T. Einevoll, and A.M. Dale: Pitfalls in the interpretation of multielectrode data: on the infeasibility of the neuronal current-source monopoles, Journal of Neurophysiology 109:1681-1682 (2013.) (www)
  • M. Yousaf, J. Wyller, T. Tetzlaff, and G.T. Einevoll: Effect of localized input on bump solutions in a two-population neural-field model, Nonlinear Analysis Series B: Real World Applications 14:997-1025 (2013). (www)
  • M. Yousaf, A. Ponosov, J. Wyller, and G.T. Einevoll: Neural firing rate model with a steep firing rate function, Nonlinear Analysis Series B: Real World Applications 14:753-767 (2013).(www)
  • A. Oleynik, A. Ponosov, and J. Wyller: On the properties of nonlinear nonlocal operators arising in neural field models, Journal of Mathematical Analysis and Applications 398:335-351 (2013). (www)
  • G.T. Einevoll, H. Linden, T. Tetzlaff, S. Leski, and K.H. Pettersen: Local field potential: biophysical origin and analysis'', in ''Principles of Neural Coding, edited by R. Quian Quiroga and S. Panzeri, pp. 37-59, CRC Press, (2013).

2012

  • S. Crook, J. Bednar, S. Berger, R. Cannon, A. Davison, M. Djurfeldt, J. Eppler, B. Kriener, S. Furber, B. Graham, H. E. Plesser, L. Schwabe, L. Smith, V. Steuber, S. v Albada: Creating, documenting and sharing network models, Network: Comp. Neural Systems 23:131-149 (2012). (www)
  • B. Kriener, L. Anand, M. Timme: Complex networks: when random walk dynamics equals synchronization, New Journal of Physics 14:093002 (2012). (www)
  • B. Kriener: How synaptic weights determine stability of synchrony in networks of pulse-coupled excitatory and inhibitory oscillators, Chaos 22:033143 (2012). (www)
  • T. Tetzlaff, M. Helias, G.T. Einevoll, and M. Diesmann: Decorrelation of neural-network activity by inhibitory feedback, PLoS Computational Biology 8:e10002596 (2012) ( www)
  • S. Kunkel, T.C. Potjans, J.M. Eppler, H.E. Plesser, A. Morrison and M. Diesmann: Meeting the memory challenges of brain-scale network simulation, Frontiers in Neuroinformatics 5:35 (2012). (www)
  • E. Norheim, J. Wyller, E. Nordlie, G.T. Einevoll: A minimal mechanistic model for temporal signal processing in the lateral geniculate nucleus, Cognitive Neurodynamics 6:259-281 (2012). (www)
  • G.T. Einevoll and H.E. Plesser: Extended difference-of-Gaussians model incorporating cortical feedback for relay cells in the lateral geniculate nucleus of cat, Cognitive Neurodynamics 6:307-324 (2012). (www)
  • G.T. Einevoll, F. Franke, E. Hagen, C. Pouzat, and K.D. Harris: : Towards reliable spike-train recordings from thousands of neurons with multielectrodes, Current Opinion in Neurobiology 22:11-17 (2012). (www)
  • L. Øyehaug, I. Østby, C. M. Lloyd, S.W. Omholt, and G.T. Einevoll: Dependence of spontaneous neuronal firing and depolarisation block on astroglica membrane transport mechanisms, Journal of Computational Neuroscience 32:147-165 (2012). www
  • S. Coombes, H. Schmidt, C. Laing, N. Svanstedt, and J. Wyller: Waves in random neural media, Discrete and Continuous Dynamical Systems - Series A 32:2951-2970 (2012). www)
  • K.H. Pettersen, H. Linden, A.M. Dale and G.T. Einevoll: Extracellular spikes and current-source density'', in ''Handbook of Neural Activity Measurement, edited by R. Brette and A. Destexhe, pp. 92-135, Cambridge University Press (2012).
  • A. Devor, D.A. Boas, G.T. Einevoll, R.B. Buxton, and A.M. Dale: Neuronal basis of non-invasive functional imaging: from BOLD fMRI to microscopic neurovascular dynamics'' in ''Neural Metabolism In Vivo, edited by I.-Y. Choi and R. Gruetter, pp. 433-500, Springer (2012).

2011

  • S.L. Gratiy, A. Devor, G.T. Einevoll, A.M. Dale: On the estimation of population-specific synaptic currents from laminar multielectrode recordings, Frontiers in Neuroinformatics 5:32 (2011)(www)
  • H. Linden, T. Tetzlaff, T.C. Potjans, K.H. Pettersen, S. Gruen, M. Diesmann, and G.T. Einevoll: Modeling the spatial reach of the LFP, Neuron 72:859-872 (2011 (www)
  • G. Halnes, S. Augustinaite, P. Heggelund, G.T. Einevoll, and M. Migliore: A multi-compartment model for interneurons in the dorsal lateral geniculate nucleus, PLoS Computational Biology 7:e10002160 (2011) (www)
  • G.T. Einevoll, P. Jurkus, P. Heggelund: Coarse-to-fine changes of receptive fields in lateral geniculate nucleus have a transient and a sustained component that depend on distinct mechanisms, PLoS ONE 6:e24523 (2011). doi:10.1371/journal.pone.0024523 (www)
  • A. Oleynik, J. Wyller, T. Tetzlaff, and G.T. Einevoll: Stability of bumps in a two-population neural-field model with quasi-power temporal kernels, Nonlinear Analysis: Real World Applications 12:3073-3094 (2011) (www)
  • S. Leski, K.H. Pettersen, B. Tunstall, G.T. Einevoll, J. Gigg, and D.K. Wojcik: Inverse Current Source Density method in two dimensions: Inferring neural activation from multielectrode recordings, Neuroinformatics 9:401-425 (2011) (www) supplementary video on YouTube
  • F. van Bussel, B. Kriener, M. Timme: Inferring synaptic connectivity from spatio-temporal spike patterns, Frontiers in Computational Neuroscience 5:3 (2011)(www)
  • M. Denker, S. Roux, H. Linden, M. Diesmann, A. Riehle, S. Grun: The local field potential reflects surplus spike synchrony, Cerebral Cortex 21:2681-2695 (2011). (www)
  • L. Etholm, H. Linden, T. Eken, P. Heggelund: Electroencephalographic characterization of seizure activity in the synapsin I/II double knockout mouse, Brain Research 1383:270-288 (2011) (www)

2010

  • E. Nordlie, T. Tetzlaff, G.T. Einevoll: Rate dynamics of leaky integrate-and-fire neurons with strong synapses, Front. Comput. Neurosci. 4:149 (2010). doi:10.3389/fncom.2010.00149 (www)
  • G.T. Einevoll, D.K. Wojcik, A. Destexhe: Modeling extracellular potentials, Journal of Computational Neuroscience 29, 367-369 (2010) (www)
  • H. Linden, K.H. Pettersen, and G.T. Einevoll: Intrinsic dendritic filtering gives low-pass power spectra of local field potentials, Journal of Computational Neuroscience 29, 423-444 (2010) (www)
  • F. Franke, M. Natora, P. Meier, E. Hagen, K.H. Pettersen, H.Linden, G.T. Einevoll, and K.Obermayer: An automated online positioning system and simulation environment for multi-electrodes in extracellular recordings, in Proceedings of the 32nd Annual International IEEE EMBC Conference, Buenos Aires, Argentina, 2010
  • A. Oleynik, J. Wyller, and I. Wertgeim: The weakly nonlocal limit of a one-population Wilson–Cowan model, Physica D: Nonlinear Phenomena 239, 1766-1778 (2010) (www)
  • G.T. Einevoll: Modeling of extracellular potentials recorded with multicontact microelectrodes, in Proceedings of 7th Int. Meeting on Substrate-Integrated Microelectrodes, Reutlingen, Germany, 2010
  • H.E. Plesser (2010), Generating Random Numbers, in Grün S. and Rotter S. (ed.), Analysis of parallel spike trains, Springer, Berlin, ISBN: 9781441956743 (www)
  • T. Tetzlaff, M. Diesmann (2010), Dependence of spike-count correlations on spike-train statistics and observation time-scale, in Grün S. and Rotter S. (ed.), Analysis of parallel spike trains, Springer, Berlin, ISBN: 9781441956743 (www)
  • E. Nordlie and H.E. Plesser: Visualizing neuronal network connectivity with connectivity pattern tables, Front. Neuroinform. 3:39. doi:10.3389/neuro.11.039.2009
  • H. E. Plesser and A. G. Jahnsen, Re-seeding invalidates tests of random number generators, Appl Math and Comput, 217:339-346. doi: 10.1016/j.amc.2010.05.066 (www, Preprint)

2009

  • G.T. Einevoll: Sharing with Python, Frontiers in Neuroscience 3, 334-335 (2009) (www)
  • E. Nordlie, M.-O. Gewaltig, and H.E. Plesser: Towards reproducible models of neuronal network models, PLoS Computational Biology 5:e1000456 (2009) (www)
  • P. Blomquist, A. Devor, U.G. Indahl, I. Ulbert, G.T. Einevoll, and A.M. Dale: Estimation of thalamocortical and intracortical network models from joint thalamic single-electrode and cortical laminar-electrode recordings in the rat barrel system, PLoS Computational Biology 5, e1000328 (2009). (www)
  • K.H. Pettersen and G.T. Einevoll: Neurophysics: what the telegraphers equation has taught us about the brain, in "An anthology of developments in clinical engineering and bioimpedance: Festschrift for Sverre Grimnes", edited by Ø. Martinsen and Ø. Jensen (Unipub, Oslo, 2009).
  • H.E. Plesser and M. Diesmann, Simplicity and Efficiency of Integrate-and-Fire Neuron Models, Neural Computation 21, 353-359 (2009) (www)
  • C. Boucsein, T. Tetzlaff, R. Meier, A. Aertsen, B. Naundorf: Dynamical response properties of neocortical neuron ensembles: Multiplicative versus additive noise, Journal of Neuroscience 29, 1006-1010 (2009) (www)
  • I. Østby, L. Øyehaug, G.T. Einevoll, E. Nagelhus, E. Plahte, T. Zeuthen, C. Lloyd, O.P. Ottersen, and S.W. Omholt: Astrocytic mechanisms explaining neural-activity-induced shrinkage of extraneuronal space, PLoS Computational Biology 5, e1000272 (2009) (www)

2008

  • T. Tetzlaff, S. Rotter, E. Stark, M. Abeles, A. Aertsen, and M. Diesmann, Dependence of Neuronal Correlations on Filter Characteristics and Marginal Spike Train Statistics, Neural Computation 20, 2133-2184 (2008) (www)
  • B. Kriener, T. Tetzlaff, A. Aertsen, M. Diesmann, and S. Rotter, Correlations and population dynamics in cortical networks, Neural Computation 20, 2185-2226 (2008) (www)
  • K.H. Pettersen, E. Hagen and G.T. Einevoll: Estimation of population firing rates and current source densities from laminar electrode recordings, Journal of Computational Neuroscience 24, 291-313 (2008). (www)
  • K.H. Pettersen and G.T. Einevoll: Amplitude variability and extracellular low-pass filtering of neuronal spikes, Biophysical Journal 94, 784-802 (2008). (www)

2007

  • Ø. Nordbø, J. Wyller and G.T. Einevoll: Neural network firing-rate models on integral form - Effects of temporal coupling kernels on equilibrium-state stability, Biological Cybernetics, No.3, pp. 195-209 (2007) (www)
  • J. Wyller, W. Z. Krolikowski, O. Bang, D. E: Petersen and J. J. Rasmussen: Modulational instability in the nonlocal X!^2 - model Physica D 227, 8 - 25 (2007) (www)
  • J. Wyller, P. Blomquist, and G.T. Einevoll: On the origin and properties of two-population neural field models - a tutorial introduction, Biophysical Reviews & Letters 2, 79-98 (2007).
  • G.T. Einevoll, K.H. Pettersen, A. Devor, I. Ulbert, E. Halgren, A.M. Dale: Laminar Population Analysis: Estimating firing rates and evoked synaptic activity from multielectrode recordings in rat barrel cortex, Journal of Neurophysiology 97, 2174-2190 (2007). (www)
  • J. Wyller, P. Blomquist, and G.T. Einevoll: Turing instability and pattern formation in a two-population neuronal network model, Physica D 225, 75-93(2007) (www)
  • A. Morrison, S. Straube, H.E. Plesser, and M. Diesmann, Exact subthreshold integration with continuous spike times in discrete-time neural network simulations, Neural Computation 19, 47-79 (2007) (www)

2006

  • T. Solstad, E.I. Moser, and G.T. Einevoll: From grid cells to place cells: a mathematical model, Hippocampus 154, 1026-1031 (2006). (www)
  • G.T. Einevoll: Mathematical modeling of neural activity. Dynamics of Complex Interconnected Systems: Networks and Bioprocesses NATO Science Series II: Mathematics, Physics and Chemistry, edited by A. Skjeltorp (Kluwer Academic, 2006). * K. Pettersen, A. Devor, I. Ulbert, A.M. Dale and G.T. Einevoll: Current-source density estimation based on inversion of electrostatic forward solution: Effects of finite extent of neuronal activity and conductivity discontinuities, Journal of Neuroscience Methods 154, 116-133 (2006)

2005

  • P. Blomquist, J. Wyller and G.T. Einevoll: Localized activity patterns in two-population neuronal networks, Physica D 206, 180-212 (2005)
  • G.T. Einevoll and H. E. Plesser: Response of the difference-of-Gaussians model to circular drifting-grating patches, Visual Neuroscience 22, 437-446 (2005)
  • W. Krolikowski, G. McCarthy, M. Saffman, O. Bang, J. Wyller and J. J. Rasmussen: Modulational instability in generalized nonlinear optical media, Bookchapter in "Focus on Lasers and Electro-Optics Research" F: Columbus, Ed., Nova Science, (2005)