- Added support for EPICv2 chip
- Added HRS cell composition model
- Saliva cell composition prediction
- Test
detectionP.minfi
for compatibility - Drop
normalize
read_idats
: extract Sentrix barcode and position from .idat files, stored inmeta
data.table (92eb8df289a473fa0c06471be197db1953e39efd0)call_genotypes
: use pre-specified parameters for SNP mixture model by default, i.e.,learn=FALSE
(507abceeb8db572d72089e423678f3cd5a7f6769)- Update recommedation of pre-processing workflow: call
mask()
aftercheck_sex()
(eb54d1b0d74d2b0231db6e03a8c60710abd42e09) - Add some unit tests
- Fix: some bisulfite conversion control probes were ignored due to inconsistent naming (24233ffcbea4337b9a7d4d3060b03b484d5ba01c)