COVID-DRDB 20210901

Release date 2021-09-01

Changes since previous release (20210811):

• update antibody_targets (b835b48, by Kaiming)
• Change B.1.621 to Mu and clean up variants/isolates (31137e0, by Philip Tzou)
• Merge branch 'master' of github.com:hivdb/covid-drdb-payload into master (4980a2b, by Kaiming)
• fix mAb epitopes and classes (413a40b, by Kaiming)
• Update suggest-new-study.md (400113a, by Philip Tzou)
• add McCallum21c,10.1101/2021.08.11.455956 (e2cee4a, by Kaiming)
• update C548, C549 class (8f67e50, by Kaiming)
• fix #23, individual mutation don't have var_name (f67124e, by Kaiming)
• add Wilhelm21,10.1101/2021.08.09.21261704 (ced8e19, by Kaiming)
• Update suggest-new-study.md (695693e, by Philip Tzou)
• Update suggest-new-study.md (a277642, by Philip Tzou)
• Add template for suggesting new study (93adb49, by Philip Tzou)
• Delete interface-feature-request.md (ac14e49, by Philip Tzou)
• Delete database-feature-request.md (9952c1d, by Philip Tzou)
• Add two more issue templates (9db8ff5, by Philip Tzou)
• Update description of data error report (c40a37a, by Philip Tzou)
• Add an issue template for reporting data error (8ec7359, by Philip Tzou)
• rename Annavajhala21 to Annavajhala21b (3f7e970, by Kaiming)
• Fix Issue #20 (4c05645, by Kaiming)
• add Du21,10.1038/s41467-021-25331-x (3e39ed2, by Kaiming)
• add Annavajhala21,10.1038/s41586-021-03908-2 (467ee0a, by Kaiming)
• fix dupont subject history (47de691, by Kaiming)
• exclude error data from zhang21c, update BRII-198 and Cilgavimab target (6139789, by Kaiming)
• add institute and origin (1dba7ed, by Kaiming)
• fix issues of cp (cfe9da2, by Kaiming)
• exclude XAV-19 (f73475c, by Kaiming Tao)
• fix vaccine_name missing issue (d5db7f9, by Kaiming Tao)
• add Tea21,10.1371/journal.pmed.1003656 (868add6, by Kaiming Tao)
• update age of Hammerschmidt21 subjects (a656c06, by Kaiming Tao)
• add Hammerschmidt21,10.1038/s41423-021-00755-z (c7957d6, by Kaiming Tao)
• add Ledesma21,10.1101/2021.08.22.21262186 (162d138, by Kaiming Tao)
• add Barros-Martins21,10.1038/s41591-021-01449-9 (a018025, by Kaiming Tao)
• add Behrens21,10.1016/S0140-6736(21)01891-2 (6acddde, by Kaiming Tao)
• fix England/MIG457/2020 (c010996, by Kaiming)
• update Acevedo DOI (57a58eb, by Kaiming)
• update acevedo21, add BNT data (bfad48c, by Kaiming)
• add Spencer21,10.1101/2021.06.08.447308 (baffe6f, by Kaiming)
• add Corbett21,10.1038/s41590-021-01021-0 (b717f05, by Kaiming)
• rename pCMV to pLentivirus (8457079, by Kaiming Tao)
• add Yadav21d,10.1101/2021.07.30.454511 (1282e66, by Kaiming Tao)
• add Yu21b,10.1038/s41586-021-03732-8 (8ca4a18, by Kaiming Tao)
• add Trombetta21,10.3390/v13071347 (bb526c6, by Kaiming Tao)
• add Wilson21,10.21203/rs.3.rs-678247/v1 (a3b519a, by Kaiming Tao)
• add Carreno21,10.1101/2021.07.21.21260961 (86fe3ee, by Kaiming)
• add Reynolds21,10.1126/science.abh1282 (068e795, by Kaiming)
• update pegu21 (84c1acb, by Kaiming)
• add Gushchin21 (e844ab7, by Kaiming)
• fix pegu21, EHC-083E, section of live virus (328064e, by Kaiming Tao)
• reformat tada21e-pot.csv and wu21c-plasma.csv (91e0be4, by Kaiming Tao)
• Merge remote-tracking branch 'shrutipai/master' (2296d39, by Kaiming Tao)
• update tada21e (582d835, by Kaiming Tao)
• update antibody with target (a964f9c, by Kaiming Tao)
• update antibody epitopes (f0bd649, by Kaiming Tao)
• Wu21c (c826d66, by Shruti Pai)
• West21 update (0b51f2c, by Shruti Pai)
• merge conflicts (253e3bf, by Shruti Pai)
• merge conflict (38a2e96, by Shruti Pai)
• Zhao21 (97b6567, by Shruti Pai)
• added Vacharathit21 birth years (a00dd44, by Shruti Pai)
• fixed riou21-pot (8354a85, by Shruti Pai)
• added Sahin21 Fig1b (56adc95, by Shruti Pai)
• Sahin21 (e88dc97, by Shruti Pai)
• Riou21 (d763b8a, by Shruti Pai)
• added infection events for pannus21 (5e1ab58, by Shruti Pai)
• Pannus21 (3046968, by Shruti Pai)
• conflicts in diez21 (17cd42a, by Shruti Pai)
• Diez21 (01f28be, by Shruti Pai)
• changed isolate name to S: format in Riou21, fixed conflicts in Abe21 (be7b440, by Shruti Pai)
• Abe21 (bbd0bf7, by Shruti Pai)
• Vacharathit21 (123dfa9, by Shruti Pai)
• fixed riou21-pot (b791bec, by Shruti Pai)
• added Sahin21 Fig1b (7aecb74, by Shruti Pai)
• Sahin21 (04ec3c1, by Shruti Pai)
• Riou21 (1aac635, by Shruti Pai)
• added infection events for pannus21 (055ba1f, by Shruti Pai)
• Pannus21 (041c5b0, by Shruti Pai)
• conflicts in diez21 (2eed0fb, by Shruti Pai)
• Diez21 (ed89f48, by Shruti Pai)
• changed isolate name to S: format in Riou21, fixed conflicts in Abe21 (29233f4, by Shruti Pai)
• Abe21 (f1814fa, by Shruti Pai)
• update dms data (f3caffd, by Kaiming)
• added Vacharathit21 birth years (39b6646, by Shruti Pai)
• conflict in articles (2d6dd9c, by Shruti Pai)
• Vacharathit21 (1bc3db8, by Shruti Pai)
• fixed riou21-pot (bb98653, by Shruti Pai)
• added Sahin21 Fig1b (59d23b8, by Shruti Pai)
• Sahin21 (44d1284, by Shruti Pai)
• Riou21 (cc10723, by Shruti Pai)
• added infection events for pannus21 (550a87a, by Shruti Pai)
• Pannus21 (1c13f30, by Shruti Pai)
• conflicts in diez21 (4edc9c6, by Shruti Pai)
• Diez21 (0e9ed06, by Shruti Pai)
• changed isolate name to S: format in Riou21, fixed conflicts in Abe21 (4a89611, by Shruti Pai)
• Abe21 (9149d05, by Shruti Pai)
• fixed riou21-pot (e79bba7, by Shruti Pai)
• added Sahin21 Fig1b (c7b3c6c, by Shruti Pai)
• Sahin21 (e55db3c, by Shruti Pai)
• Riou21 (cee6769, by Shruti Pai)
• added infection events for pannus21 (79d6118, by Shruti Pai)
• Pannus21 (8838d3e, by Shruti Pai)
• conflict in articles (60c7b22, by Shruti Pai)
• conflicts in diez21 (4756cac, by Shruti Pai)
• Diez21 (fc91037, by Shruti Pai)
• changed isolate name to S: format in Riou21, fixed conflicts in Abe21 (b52564a, by Shruti Pai)
• Merge remote-tracking branch 'shrutipai/master' into master (8d1da55, by Kaiming)
• Abe21 (cc51a0e, by Shruti Pai)
• fixed typo in articles (bd35292, by Shruti Pai)
• Merge branch 'master' of github.com:shrutipai/covid-drdb-payload into master (0c1b8ff, by Shruti Pai)
• added Sahin21 Fig1b (0a2e755, by Shruti Pai)
• edited num_subjects (daa90fe, by Shruti Pai)
• Sahin21 (f624ba3, by Shruti Pai)
• Riou21 (8ca2a2f, by Shruti Pai)
• added infection events for pannus21 (c65496d...

Pre-release 20210903-184408

Pre-release date: 2021-09-03 18:44:08 PDT

Usage of the .db files:

The .db files are SQLite3 databases. You can simply use this command to open them (if SQLite3 is installed):

sqlite3 covid-drdb-20210903-184408.db

Once the SQLite shell prompts, type .tables to list all tables.

You can also use any SQLite viewer to open the database, e.g.:

• https://inloop.github.io/sqlite-viewer/
• https://sqlitebrowser.org/

Pre-release 20210902-163906

Pre-release date: 2021-09-02 16:39:06 PDT

Usage of the .db files:

The .db files are SQLite3 databases. You can simply use this command to open them (if SQLite3 is installed):

sqlite3 covid-drdb-20210902-163906.db

Once the SQLite shell prompts, type .tables to list all tables.

You can also use any SQLite viewer to open the database, e.g.:

• https://inloop.github.io/sqlite-viewer/
• https://sqlitebrowser.org/

Pre-release 20210902-143914

Pre-release date: 2021-09-02 14:39:14 PDT

Usage of the .db files:

The .db files are SQLite3 databases. You can simply use this command to open them (if SQLite3 is installed):

sqlite3 covid-drdb-20210902-143914.db

Once the SQLite shell prompts, type .tables to list all tables.

You can also use any SQLite viewer to open the database, e.g.:

• https://inloop.github.io/sqlite-viewer/
• https://sqlitebrowser.org/

Pre-release 20210902-135317

Pre-release date: 2021-09-02 13:53:17 PDT

Usage of the .db files:

The .db files are SQLite3 databases. You can simply use this command to open them (if SQLite3 is installed):

sqlite3 covid-drdb-20210902-135317.db

Once the SQLite shell prompts, type .tables to list all tables.

You can also use any SQLite viewer to open the database, e.g.:

• https://inloop.github.io/sqlite-viewer/
• https://sqlitebrowser.org/

Pre-release 20210901-165355

Pre-release date: 2021-09-01 16:53:55 PDT

Usage of the .db files:

The .db files are SQLite3 databases. You can simply use this command to open them (if SQLite3 is installed):

sqlite3 covid-drdb-20210901-165355.db

Once the SQLite shell prompts, type .tables to list all tables.

You can also use any SQLite viewer to open the database, e.g.:

• https://inloop.github.io/sqlite-viewer/
• https://sqlitebrowser.org/

Pre-release 20210901-162116

Pre-release date: 2021-09-01 16:21:16 PDT

Usage of the .db files:

The .db files are SQLite3 databases. You can simply use this command to open them (if SQLite3 is installed):

sqlite3 covid-drdb-20210901-162116.db

Once the SQLite shell prompts, type .tables to list all tables.

You can also use any SQLite viewer to open the database, e.g.:

• https://inloop.github.io/sqlite-viewer/
• https://sqlitebrowser.org/

Pre-release 20210901-120542

Pre-release date: 2021-09-01 12:05:42 PDT

Usage of the .db files:

The .db files are SQLite3 databases. You can simply use this command to open them (if SQLite3 is installed):

sqlite3 covid-drdb-20210901-120542.db

Once the SQLite shell prompts, type .tables to list all tables.

You can also use any SQLite viewer to open the database, e.g.:

• https://inloop.github.io/sqlite-viewer/
• https://sqlitebrowser.org/

Pre-release 20210831-154058

Pre-release date: 2021-08-31 15:40:58 PDT

Usage of the .db files:

The .db files are SQLite3 databases. You can simply use this command to open them (if SQLite3 is installed):

sqlite3 covid-drdb-20210831-154058.db

Once the SQLite shell prompts, type .tables to list all tables.

You can also use any SQLite viewer to open the database, e.g.:

• https://inloop.github.io/sqlite-viewer/
• https://sqlitebrowser.org/

Pre-release 20210831-115219

Pre-release date: 2021-08-31 11:52:19 PDT

Usage of the .db files:

The .db files are SQLite3 databases. You can simply use this command to open them (if SQLite3 is installed):

sqlite3 covid-drdb-20210831-115219.db

Once the SQLite shell prompts, type .tables to list all tables.

You can also use any SQLite viewer to open the database, e.g.:

• https://inloop.github.io/sqlite-viewer/
• https://sqlitebrowser.org/