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lines changed Original file line number Diff line number Diff line change @@ -36,6 +36,8 @@ Most of our tools work years after their initial publications and are often well
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* [ longcallR] [ sw-longcallR ] : SNP calling and haplotype-specific analysis for long RNA-seq reads, preprinted in [ Huang et al (2025)] [ pub-longcallR ]
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<img style =" margin : 0px " src =" https://img.shields.io/github/stars/huangnengCSU/longcallR " />
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<a href =" https://bioconda.github.io/recipes/longcallr/README.html " ><img style =" margin : 0px " src =" https://img.shields.io/conda/dn/bioconda/longcallR.svg?style=flag&label=Bioconda " /></a >
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+ * [ colorSV] [ sw-colorsv ] : somatic SV calling via tumor-normal co-assembly, preprinted in [ Le et al (2024)] [ pub-colorsv ]
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+ <img style =" margin : 0px " src =" https://img.shields.io/github/stars/mktle/colorSV " />
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* [ ropebwt3] [ sw-rb3 ] : construction and utility of BWT for DNA string sets, published in [ Li (2014)] [ pub-rb2 ] and [ Li (2024)] [ pub-rb3 ] .
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<img style =" margin : 0px " src =" https://img.shields.io/github/stars/lh3/ropebwt3 " />
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<a href =" https://bioconda.github.io/recipes/ropebwt3/README.html " ><img style =" margin : 0px " src =" https://img.shields.io/conda/dn/bioconda/ropebwt3.svg?style=flag&label=Bioconda " /></a >
@@ -78,6 +80,8 @@ Most of our tools work years after their initial publications and are often well
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<img style =" margin : 0px " src =" https://img.shields.io/github/stars/lh3/bwa " />
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<a href =" https://bioconda.github.io/recipes/bwa/README.html " ><img style =" margin : 0px " src =" https://img.shields.io/conda/dn/bioconda/bwa.svg?style=flag&label=Bioconda " /></a >
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+ [ sw-colorsv ] : https://github.com/mktle/colorSV
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+ [ pub-colorsv ] : https://www.biorxiv.org/content/10.1101/2024.07.29.605160v1
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[ sw-minisplice ] : https://github.com/lh3/minisplice
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[ sw-myloasm ] : https://github.com/bluenote-1577/myloasm
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[ sw-longcallD ] : https://github.com/yangao07/longcallD
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