From dccb93940db11d7931ff7b0a3c418419805af88e Mon Sep 17 00:00:00 2001
From: GeorgeC <gcolon021@gmail.com>
Date: Tue, 12 Nov 2024 16:34:28 -0500
Subject: [PATCH] Add configuration files and HTTP requests setup

Included configuration properties for development environments in `application-bdc-dev.properties` and added a sample `weights.csv` file. Also, created HTTP request scripts for dictionary API and provided Docker commands for local development in the README.
---
 dictionaryweights/README.md                       | 11 +++++++++++
 .../main/resources/application-bdc-dev.properties |  9 +++++++++
 dictionaryweights/weights.csv                     |  7 +++++++
 dictonaryReqeust.http                             | 15 +++++++++++++++
 src/main/resources/application-bdc-dev.properties | 14 ++++++++++++++
 5 files changed, 56 insertions(+)
 create mode 100644 dictionaryweights/README.md
 create mode 100644 dictionaryweights/src/main/resources/application-bdc-dev.properties
 create mode 100644 dictionaryweights/weights.csv
 create mode 100644 dictonaryReqeust.http
 create mode 100644 src/main/resources/application-bdc-dev.properties

diff --git a/dictionaryweights/README.md b/dictionaryweights/README.md
new file mode 100644
index 0000000..39e6352
--- /dev/null
+++ b/dictionaryweights/README.md
@@ -0,0 +1,11 @@
+## Docker commands for local development
+### Docker build
+```bash
+docker build --no-cache --build-arg SPRING_PROFILE=bdc-dev -t weights:latest .
+```
+
+### Docker run
+You will need a local weights.csv file.
+```bash
+    docker run --rm -t --name dictionary-weights --network=host -v ./weights.csv:/weights.csv weights:latest
+```
\ No newline at end of file
diff --git a/dictionaryweights/src/main/resources/application-bdc-dev.properties b/dictionaryweights/src/main/resources/application-bdc-dev.properties
new file mode 100644
index 0000000..5b79313
--- /dev/null
+++ b/dictionaryweights/src/main/resources/application-bdc-dev.properties
@@ -0,0 +1,9 @@
+spring.application.name=dictionaryweights
+spring.main.web-application-type=none
+
+spring.datasource.url=jdbc:postgresql://localhost:5432/dictionary_db?currentSchema=dict
+spring.datasource.username=username
+spring.datasource.password=password
+spring.datasource.driver-class-name=org.postgresql.Driver
+
+weights.filename=/weights.csv
\ No newline at end of file
diff --git a/dictionaryweights/weights.csv b/dictionaryweights/weights.csv
new file mode 100644
index 0000000..d3cc913
--- /dev/null
+++ b/dictionaryweights/weights.csv
@@ -0,0 +1,7 @@
+concept_node.DISPLAY,2
+concept_node.CONCEPT_PATH,2
+dataset.FULL_NAME,1
+dataset.DESCRIPTION,1
+parent.DISPLAY,1
+grandparent.DISPLAY,1
+concept_node_meta_str,1
\ No newline at end of file
diff --git a/dictonaryReqeust.http b/dictonaryReqeust.http
new file mode 100644
index 0000000..ec3f071
--- /dev/null
+++ b/dictonaryReqeust.http
@@ -0,0 +1,15 @@
+# curl 'https://dev.picsure.biodatacatalyst.nhlbi.nih.gov/picsure/proxy/dictionary-api/concepts?page_number=1&page_size=1'
+#  -H 'origin: https://dev.picsure.biodatacatalyst.nhlbi.nih.gov'
+#  -H 'referer: https://dev.picsure.biodatacatalyst.nhlbi.nih.gov/'
+#  --data-raw '{"facets":[],"search":"","consents":[]}'
+POST http://localhost:80/concepts?page_number=1&page_size=100
+Content-Type: application/json
+
+{"facets":[],"search":"age","consents":[]}
+
+###
+
+POST http://localhost:80/search
+Content-Type: application/json
+
+{"query":{"searchTerm":"AGEDIANA","includedTags":[],"excludedTags":[],"returnTags":"true","offset":0,"limit":5}}
\ No newline at end of file
diff --git a/src/main/resources/application-bdc-dev.properties b/src/main/resources/application-bdc-dev.properties
new file mode 100644
index 0000000..219dfbb
--- /dev/null
+++ b/src/main/resources/application-bdc-dev.properties
@@ -0,0 +1,14 @@
+spring.application.name=dictionary
+spring.datasource.url=jdbc:postgresql://localhost:5432/dictionary_db?currentSchema=dict
+spring.datasource.username=username
+spring.datasource.password=password
+spring.datasource.driver-class-name=org.postgresql.Driver
+server.port=80
+
+dashboard.columns={abbreviation:'Abbreviation',name:'Name',clinvars:'Clinical Variables'}
+dashboard.column-order=abbreviation,name,clinvars
+dashboard.nonmeta-columns=abbreviation,name
+dashboard.enable.extra_details=true
+dashboard.enable.bdc_hack=true
+
+filtering.unfilterable_concepts=stigmatized
\ No newline at end of file