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ChangeLog
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2020-01-14 Søren Højsgaard <[email protected]>
* Cleaning up experimental features
* NAMESPACE file now generated automatically
* Added testthat
* Bug in propagateLS (cpp version) fixed
* Version 1.3-3 uploaded
2016-10-15 Søren Højsgaard <[email protected]>
* Rewritten using roxygen
* Version 1.3-0 uploaded
2015-12-30 Søren Højsgaard <[email protected]>
* plot(network, type="jt") now works again (same as plot(network,
type="rip"), but the "jt" is mentioned in the GMwR-book, p 57).
* Version 1.2-5 uploaded.
2015-06-28 Søren Højsgaard <[email protected]>
* many minor improvements
* Version 1.2-4 uploaded.
2013-09-15 Søren Højsgaard <[email protected]>
* A note is printed if NA's appear in conditional probability
tables.
* Improved vignette
* Version 1.2-2 uploaded.
2013-08-08 Søren Højsgaard <[email protected]>
* NAMESPACE file updated
* Version 1.2-1 uploaded
2013-07-14 Søren Højsgaard <[email protected]>
* setEvidence function added. This function allows to insert
likelihood evidence / virtual evidence in a network. The syntax
may well change in the future. Corresponding functions
retractEvidence, getEvidence, pEvidence have been added.
* Vignette about the use of setEvidence has been added.
* Components of a "CPTspec" (a list) now have node names as names.
* Version 1.2-0 uploaded
2013-06-29 Søren Højsgaard <[email protected]>
* setEvidence function added. This function allows to insert
likelihood evidence / virtual evidence in a network. The name of
this function and its syntax may well change in the future.
* loadHuginNet: bug fixed (related to potentials with exponential
notation).
* Version 1.1-2 uploaded
2013-05-28 Søren Højsgaard <[email protected]>
* simulateArray and glist2setMAT moved to gRbase
* The use of fmatch from the fastmatch package has been removed
because it can create trouble when a network is saved and reloaded.
* Version 1.1-1 uploaded
2012-12-28 Søren Højsgaard <[email protected]>
* In moralization, triangulation and other places, graphs are now
represented as sparse matrices (dgCMatrix from the Matrix
package). This means that the package can now handle much larger
networks than before.
* Substantial speedup in propagation for large networks.
* Function random_cpt added. Allows simulation of large networks.
* Version 1.1-0 uploaded
2012-08-21 Søren Højsgaard <[email protected]>
* Bug fixed in setFindings
* Version 1.0-3 uploaded
2012-08-04 Søren Højsgaard <[email protected]>
* Minimum version of gRbase stated.
* Updates of e-mail address
* Version 1.0-2 uploaded
2012-07-27 Søren Højsgaard <[email protected]>
* Minor changes needed to make gRain compatible with gRbase
* Version 1.0-1 uploaded
2012-02-27 Søren Højsgaard <[email protected]>
* Following request from Achim Zeilis, the package version has
been changed to 1.0-0 to signal that the JSS-paper has been
published.
* URLs updated
* Version 1.0-0 uploaded
2012-02-21 Søren Højsgaard <[email protected]>
* Bug related to resetting network fixed
* Version 0.8.14 uploaded
2012-02-17 Søren Højsgaard <[email protected]>
* Bug in setFinding fixed
* Version 0.8.13 uploaded
2012-01-17 Søren Højsgaard <[email protected]>
* Small changes to package structure
* Version 0.8.12 uploaded
2012-01-17 Søren Højsgaard <[email protected]>
* argument 'return' to querygrain is changed to 'result'.
* URL updated
* Version 0.8.11 uploaded
2011-12-30 Søren Højsgaard <[email protected]>
* Bug in simulate fixed. Thanks to Vanessa Didelez for pointing
this bug out.
* E-mail address changed
* Version 0.8.10 uploaded
2011-09-07 Søren Højsgaard <[email protected]>
* A check for whether pFinding is zero added in predict method
* Function repeatPattern has been added.
* Version 0.8.9 uploaded
2011-07-20 Søren Højsgaard <[email protected]>
* Minor changes and fixes
* Version 0.8.8 uploaded
2010-01-17 Søren Højsgaard <[email protected]>
* Version 0.8.7 uploaded
2010-08-13 Søren Højsgaard <[email protected]>
* extractCPT and extractPOT now also works on dataframes
* An iplot method for grain objects has been added.
* Version 0.8.6 uploaded
2010-05-07 Søren Højsgaard <[email protected]>
* Error in loadHuginNet has been fixed. Thanks to Parisa Niloofar
for pointing this out.
* cptable() now accepts formulae of the form a|b+c
* The argument pa to cptable() has been deprecated (it was never
used anyway!)
* Version 0.8.5 uploaded
2010-02-11 Søren Højsgaard <[email protected]>
* compile and propagate functions have been made generic and moved
to gRbase
* Version 0.8.4 uploaded
2010-02-03 Søren Højsgaard <[email protected]>
* Bug fixed in predict.grain
* Version 0.8.3 uploaded
2009-10-31 Søren Højsgaard <[email protected]>
* All 'trace' arguments have been changed to 'details'
* Version 0.8.2 uploaded
2009-07-31 Søren Højsgaard <[email protected]>
* In previous versions: If the normalizing constant was zero then
propagation was stopped. This has been changed so that propagation
continues and the conditional probabilities are then NaN.
* Version 0.8.1 uploaded
2009-04-26 Søren Højsgaard <[email protected]>
* Simplification of code.
* Version 0.8.0 uploaded
2009-02-11 Søren Højsgaard <[email protected]>
* Bunch of minor changes, renamings etc. No new functionality.
* Version 0.7.0 uploaded
2009-01-22 Søren Højsgaard <[email protected]>
* Various speed ups
* Version 0.6.0 uploaded
2009-01-05 Søren Højsgaard <[email protected]>
* grain objects built from undirected graph and data now extended
so that they also contain the slots dag and cptlist (so that they
can be saved as a Hugin net file).
* Version 0.5.3 uploaded.
2008-12-04 Søren Højsgaard <[email protected]>
* Small change on MCS call for consistency with current gRbase
* Version 0.4.1 uploaded
2008-08-08 Søren Højsgaard <[email protected]>
* General table operation functions moved to gRbase
* Version 0.4.0 uploaded
2008-07-13 Søren Højsgaard <[email protected]>
* Rgraphviz is no longer required, but if it is installed then
plot() will produce graphs.
* Version 0.3.4 uploaded
2008-06-12 Søren Højsgaard <[email protected]>
* Bug fix: ripOrder did not work on networks with only one clique
in triangulated graph.
* Version 0.3.3 uploaded
2008-05-07 Søren Højsgaard <[email protected]>
* Removal of functions which are in gRbase
* Version 0.3.2 uploaded
2008-05-01 Søren Højsgaard <[email protected]>
* Coercion to ptab with as.ptab introduced.
* Minor bugs corrected
* Vignette added
* Version 0.3.1 uploaded
2008-03-27 Søren Højsgaard <[email protected]>
* duplicated facilities (now moved to gRbase) are removed.
* Debugging output in mcs removed
* Major cleanup in graph code
* Version 0.3.0 uploaded
2008-03-06 Søren Højsgaard <[email protected]>
* ctab objects changed to ptab objects (essentially arrays but
modified such that dimension attributes are preserved).
* Reimplemntation of table operations
* A much faster implementation of simulate
* Documents are updated
* Various minor changes
* Version 0.2.0 uploaded
2008-02-27 Søren Højsgaard <[email protected]>
* ctab slot-names have been modified
* C code for graph triangulation incorporated;
* Numerous small alterations
* Various docs (pdfs) included
* Version 0.1.2 uploaded
2008-01-30 Søren Højsgaard <[email protected]>
* simulate now works on uncompile objects
* Version 0.1.1 of gRain uploaded to CRAN
2008-01-22 Søren Højsgaard <[email protected]>
* Version 0.1.0 of gRain uploaded to CRAN