differential_nichenet_files
differential_nichenet_pEMT_files
ligand_activity_geneset_files
ligand_activity_single_cell_files
seurat_wrapper_circos_files
seurat_wrapper_files/figure-gfm
comparison_other_approaches_2.jpg
comparison_other_approaches_2.png
differential_nichenet.Rmd
differential_nichenet_pEMT.Rmd
differential_nichenet_pEMT.md
ligand_activity_geneset.Rmd
ligand_activity_geneset.md
ligand_activity_prediction_workflow_new.jpg
ligand_activity_prediction_workflow_new.png
ligand_activity_single_cell.Rmd
ligand_activity_single_cell.md
ligand_receptor_circos.svg
ligand_target_circos_adapted.svg
ligand_target_circos_adapted_caf.svg
ligand_target_signaling_path.Rmd
ligand_target_signaling_path.md
parameter_optimization.Rmd
parameter_optimization.md
seurat_steps_TF_activity.Rmd
seurat_wrapper_circos.Rmd
target_prediction_evaluation_geneset.Rmd
target_prediction_evaluation_geneset.md
tgfb3_targets_signaling_path.jpg
tgfb3_targets_signaling_path.png
workflow_model_construction.jpg
workflow_model_construction.png
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