Create validation script for lab data

[tamslo]

Input: data that should be sent to app

Output: warnings if assumptions are not met

⚠️ Will be implemented in study backend (Sinai fork)

Tasks

• Test that data is in format expected by the app
• Check whether genes that occur multiple times are always genes with "positive/negative" result for specific alleles in the fomat "<allele_name_without_spaces> [positive/negative]"
• Check whether gene/diplotype lookups are included in CPIC
• Check whether CPIC phenotypes and lab report phenotypes (required!) match
• Check that genes names do not contain spaces
• Double-check results explicitly for comprehension questionnaire medications: ibuprofen, simvastatin, citalopram, clopidogrel