diff --git a/htrc/torchlite/data.py b/htrc/torchlite/data.py index 0afb007..84c3caf 100644 --- a/htrc/torchlite/data.py +++ b/htrc/torchlite/data.py @@ -1,8 +1,18 @@ +from uuid import UUID + +import nltk from .converters import torchlite_volume_meta_from_ef from .ef.models import Volume from .models.dashboard import FilterSettings +from .models.dashboard import DataCleaningSettings from .utils import make_set +from .config import config +from nltk.corpus import stopwords +import os +import json +import logging +log = logging.getLogger(config.PROJECT_NAME) def apply_filters(volumes: list[Volume], filters: FilterSettings) -> list[Volume]: filtered_volumes = [] @@ -34,3 +44,57 @@ def apply_filters(volumes: list[Volume], filters: FilterSettings) -> list[Volume filtered_volumes.append(volume) return filtered_volumes + +def load_stopwords(dashboard_id: UUID, language: str, directory="stopword_lists"): + nltk.download('stopwords') + default_languages = ['english', 'german', 'spanish', 'french'] + if not os.path.exists(directory): + os.makedirs(directory) + for lang in default_languages: + stopword_list = stopwords.words(lang) + stopword_file_path = os.path.join(directory, f"{lang}_stopwords.json") + with open(stopword_file_path, 'w', encoding='utf-8') as file: + json.dump(stopword_list, file, ensure_ascii=False, indent=4) + + stopword_file_path = os.path.join(directory, f"{dashboard_id}_stopwords.json") + log.debug(stopword_file_path) + log.debug(os.path.exists(stopword_file_path)) + if lang not in ["English", "German", "French", "Spanish"]: + if (os.path.exists(stopword_file_path)): + with open(stopword_file_path, 'r', encoding='utf-8') as file: + return json.load(file) + + default_stopword_file = os.path.join(directory, f"{language}_stopwords.json") + if (os.path.exists(default_stopword_file)): + with open(default_stopword_file, 'r', encoding='utf-8') as file: + return json.load(file) + +def clean_volume_data(volume: Volume, stopwords: list[str]): + cleaned_data = {} + + for word, count in volume.features.body.items(): + lower_word = word.lower() + + if lower_word not in stopwords: + if lower_word not in cleaned_data: + cleaned_data[lower_word] = count + else: + cleaned_data[lower_word] += count + volume.features.body = cleaned_data + return volume + +def apply_datacleaning(dashboard_id: UUID, filtered_volumes: list[Volume], cleaning_settings: DataCleaningSettings): + cleaned_volumes = [] + if (cleaning_settings.language): + stopwords = load_stopwords(dashboard_id, cleaning_settings.language.lower()) + + count = 0 + for volume in filtered_volumes: + log.debug(f"'me' present before cleaning: {'me' in volume.features.body}") + cleaned_volume = clean_volume_data(volume, stopwords) + count += 1 + log.debug(f"'me' present after cleaning: {'me' in cleaned_volume.features.body}") + cleaned_volumes.append(cleaned_volume) + + return cleaned_volumes + return filtered_volumes \ No newline at end of file diff --git a/htrc/torchlite/ef/models.py b/htrc/torchlite/ef/models.py index dba5549..2454ca7 100644 --- a/htrc/torchlite/ef/models.py +++ b/htrc/torchlite/ef/models.py @@ -137,4 +137,4 @@ class VolumeAggFeaturesNoPos(BaseModel): class Volume(BaseModel, Generic[FeaturesT]): htid: str metadata: VolumeMetadata - features: FeaturesT | None = None + features: VolumeAggFeaturesNoPos | VolumeFeatures | None = None diff --git a/htrc/torchlite/models/dashboard.py b/htrc/torchlite/models/dashboard.py index 9255606..67ab0ec 100644 --- a/htrc/torchlite/models/dashboard.py +++ b/htrc/torchlite/models/dashboard.py @@ -22,11 +22,14 @@ class FilterSettings(BaseModel): languages: list[str] = [] source_institutions: list[str] = [] +class DataCleaningSettings(BaseModel): + language: str | None = None class Dashboard(BaseModel, arbitrary_types_allowed=True): id: PyUuid = Field(default_factory=uuid.uuid4) imported_id: UUID filters: FilterSettings | None + datacleaning: DataCleaningSettings | None = None widgets: list[ALL_WIDGETS] @@ -45,12 +48,14 @@ class DashboardCreate(MongoModel): description: str | None = None imported_id: UUID filters: FilterSettings | None = None + datacleaning: DataCleaningSettings | None = None widgets: conlist(ALL_WIDGETS, min_length=1) class DashboardPatch(MongoModel): imported_id: UUID | None = None filters: FilterSettings | None = None + datacleaning: DataCleaningSettings | None = None widgets: list[ALL_WIDGETS] | None = None is_shared: bool | None = None diff --git a/htrc/torchlite/routers/dashboards.py b/htrc/torchlite/routers/dashboards.py index 2ec5f2c..03245b1 100644 --- a/htrc/torchlite/routers/dashboards.py +++ b/htrc/torchlite/routers/dashboards.py @@ -1,7 +1,7 @@ from uuid import UUID from authlib.oidc.core import UserInfo -from fastapi import APIRouter, Depends, HTTPException, status +from fastapi import APIRouter, Depends, HTTPException, status, UploadFile, File from fastapi_cache.decorator import cache from fastapi_cache import FastAPICache from pymongo import ReturnDocument @@ -11,6 +11,7 @@ from ..auth.auth import get_current_user, get_user_access_token from ..config import config from ..data import apply_filters +from ..data import apply_datacleaning from ..database import mongo_client from ..ef.api import ef_api from ..errors import TorchliteError @@ -18,6 +19,10 @@ from ..models.dashboard import DashboardSummary, DashboardPatch, DashboardCreate, DashboardPatchUpdate from ..models.workset import WorksetIdMapping from ..widgets.base import WidgetDataTypes +import os +import json +import csv +from fastapi.responses import JSONResponse from ..ef.exceptions import EfApiError import logging @@ -46,6 +51,7 @@ def request_key_builder(func, namespace: str = "", *, request: Request = None, r async def list_dashboards(workset_manager: WorksetManager, owner: UUID | None = None, user: UserInfo | None = Depends(get_current_user)) -> list[DashboardSummary]: + if owner == config.TORCHLITE_UID: await workset_manager.get_public_worksets() workset_manager.get_featured_worksets() @@ -60,13 +66,13 @@ async def list_dashboards(workset_manager: WorksetManager, if not user: raise HTTPException(status_code=status.HTTP_401_UNAUTHORIZED) - + user_id = UUID(user.get("htrc-guid", user.sub)) owner = owner or user_id - + if user_id != owner: raise HTTPException(status_code=status.HTTP_403_FORBIDDEN) - + return await DashboardSummary.from_mongo( mongo_client.db["dashboards"].find({"owner": owner}).to_list(1000) ) @@ -195,11 +201,11 @@ async def update_dashboard(dashboard_id: UUID, log.error(f"Dashboard patch error: {dashboard}") raise HTTPException(status_code=status.HTTP_500_INTERNAL_SERVER_ERROR) - @router.get("/{dashboard_id}/widgets/{widget_type}/data", description="Retrieve widget data") @cache(key_builder=request_key_builder) async def get_widget_data(dashboard_id: UUID, widget_type: str, user: UserInfo | None = Depends(get_current_user)): + dashboard = await get_dashboard(dashboard_id, user) # fastapi_cache doesn't seem to preserve pydantic models and instead returns dicts, so converting @@ -246,11 +252,113 @@ async def get_widget_data(dashboard_id: UUID, widget_type: str, status_code=status.HTTP_504_GATEWAY_TIMEOUT, detail=f"Server timeout for {imported_id_mapping.workset_id} on request for data for the {widget_type} widget" ) - + #check widget type and perform cleaning filtered_volumes = apply_filters(volumes, filters=dashboard.filters) + log.debug(f"Total volumes before cleaning: filtered_volumes {len(filtered_volumes)}") + if (widget.data_type == WidgetDataTypes.metadata_only): + return await widget.get_data(filtered_volumes) + cleaned_volumes = apply_datacleaning(dashboard_id, filtered_volumes, cleaning_settings=dashboard.datacleaning) + log.debug(f"Total volumes to clean: cleaned_volumes {len(cleaned_volumes)}") + return await widget.get_data(cleaned_volumes) - return await widget.get_data(filtered_volumes) +#dashboard_id/stopwords +@router.get("/{dashboard_id}/stopwords/{language}", description="Retrieve Stopwords data") +async def get_stopwords_data(dashboard_id: UUID, language: str, + user: UserInfo | None = Depends(get_current_user)): + + dashboard = await get_dashboard(dashboard_id, user) + if not dashboard: + raise HTTPException( + status_code=status.HTTP_404_NOT_FOUND, + detail=f"Dashboard {dashboard_id} not found" + ) + + # Normalize language input + print(dashboard_id,language) + language = language.lower().strip() + directory="stopword_lists" + stopword_file_path = os.path.join(directory, f"{language}_stopwords.json") + + if not os.path.exists(stopword_file_path): + print(f"Stopwords file for language '{language}' not found.") + + raise HTTPException( + status_code=status.HTTP_404_NOT_FOUND, + detail=f"Stopwords file for language '{language}' not found" + ) + + try: + # Read and parse JSON file + with open(stopword_file_path, 'r', encoding='utf-8') as file: + stopwords_data = json.load(file) + + # Return JSON response + return JSONResponse( + content=stopwords_data, + media_type="application/json" + ) + except json.JSONDecodeError: + raise HTTPException( + status_code=status.HTTP_500_INTERNAL_SERVER_ERROR, + detail=f"Error parsing stopwords JSON file for language '{language}'" + ) + + +@router.post("/{dashboard_id}/stopwords", description="Upload stopwords file", response_model_exclude_defaults=True) +async def upload_stopwords(dashboard_id: UUID, + user: UserInfo | None = Depends(get_current_user), + file: UploadFile = File(...)) -> DashboardSummary: + dashboard = await get_dashboard(dashboard_id, user) + print("Pooja") + if not dashboard: + raise HTTPException( + status_code=status.HTTP_404_NOT_FOUND, + detail=f"Dashboard {dashboard_id} not found" + ) + + os.makedirs("stopword_lists", exist_ok=True) + file_path = os.path.join("stopword_lists", f"{dashboard_id}_stopwords.json") + try: + # Determine file type based on the filename + filename = file.filename.lower() + content = await file.read() # Read file content as bytes + stopwords_list = [] + + if filename.endswith(".txt"): + # Handle TXT file: split content into lines + stopwords_list = content.decode("utf-8").splitlines() + stopwords_list = [line.strip() for line in stopwords_list if line.strip()] + + elif filename.endswith(".csv"): + # Handle CSV file: parse rows and extract stopwords + decoded_content = content.decode("utf-8").splitlines() + csv_reader = csv.reader(decoded_content) + for row in csv_reader: + stopwords_list.extend([word.strip() for word in row if word.strip()]) + + else: + raise HTTPException( + status_code=status.HTTP_400_BAD_REQUEST, + detail="Unsupported file format. Please upload a .txt or .csv file." + ) + + # Save the stopwords as a JSON array + with open(file_path, "w", encoding="utf-8") as json_file: + json.dump(stopwords_list, json_file, ensure_ascii=False, indent=4) + + return { + "message": "Stopwords uploaded and processed successfully", + "file_path": file_path, + "filters": {}, + "widgets": [], + "owner": dashboard_id + } + except Exception as e: + raise HTTPException( + status_code=status.HTTP_500_INTERNAL_SERVER_ERROR, + detail=f"Error processing stopwords file: {e}" + ) @router.get("/{dashboard_id}/{data_type}", description="Retrieve workset data or metadata") @cache(key_builder=request_key_builder) diff --git a/poetry.lock b/poetry.lock index 9404b39..0bc26d9 100644 --- a/poetry.lock +++ b/poetry.lock @@ -2,59 +2,56 @@ [[package]] name = "alabaster" -version = "0.7.16" +version = "1.0.0" description = "A light, configurable Sphinx theme" optional = false -python-versions = ">=3.9" -groups = ["docs"] +python-versions = ">=3.10" files 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"her", + "hers", + "herself", + "it", + "it's", + "its", + "itself", + "they", + "them", + "their", + "theirs", + "themselves", + "what", + "which", + "who", + "whom", + "this", + "that", + "that'll", + "these", + "those", + "am", + "is", + "are", + "was", + "were", + "be", + "been", + "being", + "have", + "has", + "had", + "having", + "do", + "does", + "did", + "doing", + "a", + "an", + "the", + "and", + "but", + "if", + "or", + "because", + "as", + "until", + "while", + "of", + "at", + "by", + "for", + "with", + "about", + "against", + "between", + "into", + "through", + "during", + "before", + "after", + "above", + "below", + "to", + "from", + "up", + "down", + "in", + "out", + "on", + "off", + "over", + "under", + "again", + "further", + "then", + "once", + "here", + "there", + "when", + "where", + "why", + "how", + "all", + "any", + "both", + "each", + "few", + "more", + "most", + "other", + "some", + "such", + "no", + "nor", + "not", + "only", + "own", + "same", + "so", + "than", + "too", + "very", + "s", + "t", + "can", + "will", + "just", + "don", + "don't", + "should", + "should've", + "now", + "d", + "ll", + "m", + "o", + "re", + "ve", + "y", + "ain", + "aren", + "aren't", + "couldn", + "couldn't", + "didn", + "didn't", + "doesn", + "doesn't", + "hadn", + "hadn't", + "hasn", + "hasn't", + "haven", + "haven't", + "isn", + "isn't", + "ma", + "mightn", + "mightn't", + "mustn", + "mustn't", + "needn", + "needn't", + "shan", + "shan't", + "shouldn", + "shouldn't", + "wasn", + "wasn't", + "weren", + "weren't", + "won", + "won't", + "wouldn", + "wouldn't" +] \ No newline at end of file diff --git a/stopword_lists/french_stopwords.json b/stopword_lists/french_stopwords.json new file mode 100644 index 0000000..3b6a58c --- /dev/null +++ b/stopword_lists/french_stopwords.json @@ -0,0 +1,159 @@ +[ + "au", + "aux", + "avec", + "ce", + "ces", + "dans", + "de", + "des", + "du", + "elle", + "en", + "et", + "eux", + "il", + "ils", + "je", + "la", + "le", + "les", + "leur", + "lui", + "ma", + "mais", + "me", + "même", + "mes", + "moi", + "mon", + "ne", + "nos", + "notre", + "nous", + "on", + "ou", + "par", + "pas", + "pour", + "qu", + "que", + "qui", + "sa", + "se", + "ses", + "son", + "sur", + "ta", + "te", + "tes", + "toi", + "ton", + "tu", + "un", + "une", + "vos", + "votre", + "vous", + "c", + "d", + "j", + "l", + "à", + "m", + "n", + "s", + "t", + "y", + "été", + "étée", + "étées", + "étés", + "étant", + "étante", + "étants", + "étantes", + "suis", + "es", + "est", + "sommes", + "êtes", + "sont", + "serai", + "seras", + "sera", + "serons", + "serez", + "seront", + "serais", + "serait", + "serions", + "seriez", + "seraient", + "étais", + "était", + "étions", + "étiez", + "étaient", + "fus", + "fut", + "fûmes", + "fûtes", + "furent", + "sois", + "soit", + "soyons", + "soyez", + "soient", + "fusse", + "fusses", + "fût", + "fussions", + "fussiez", + "fussent", + "ayant", + "ayante", + "ayantes", + "ayants", + "eu", + "eue", + "eues", + "eus", + "ai", + "as", + "avons", + "avez", + "ont", + "aurai", + "auras", + "aura", + "aurons", + "aurez", + "auront", + "aurais", + "aurait", + "aurions", + "auriez", + "auraient", + "avais", + "avait", + "avions", + "aviez", + "avaient", + "eut", + "eûmes", + "eûtes", + "eurent", + "aie", + "aies", + "ait", + "ayons", + "ayez", + "aient", + "eusse", + "eusses", + "eût", + "eussions", + "eussiez", + "eussent" +] \ No newline at end of file diff --git a/stopword_lists/german_stopwords.json b/stopword_lists/german_stopwords.json new file mode 100644 index 0000000..60a4907 --- /dev/null +++ b/stopword_lists/german_stopwords.json @@ -0,0 +1,234 @@ +[ + "aber", + "alle", + "allem", + "allen", + "aller", + "alles", + "als", + "also", + "am", + "an", + "ander", + "andere", + "anderem", + "anderen", + "anderer", + "anderes", + "anderm", + "andern", + "anderr", + "anders", + "auch", + "auf", + "aus", + "bei", + "bin", + "bis", + "bist", + "da", + "damit", + "dann", + "der", + "den", + "des", + "dem", + "die", + "das", + "dass", + "daß", + "derselbe", + "derselben", + "denselben", + "desselben", + "demselben", + "dieselbe", + "dieselben", + "dasselbe", + "dazu", + "dein", + "deine", + "deinem", + "deinen", + "deiner", + "deines", + "denn", + "derer", + "dessen", + "dich", + "dir", + "du", + "dies", + "diese", + "diesem", + "diesen", + "dieser", + "dieses", + "doch", + "dort", + "durch", + "ein", + "eine", + "einem", + "einen", + "einer", + "eines", + "einig", + "einige", + "einigem", + "einigen", + "einiger", + "einiges", + "einmal", + "er", + "ihn", + "ihm", + "es", + "etwas", + "euer", + "eure", + "eurem", + "euren", + "eurer", + "eures", + "für", + "gegen", + "gewesen", + "hab", + "habe", + "haben", + "hat", + "hatte", + "hatten", + "hier", + "hin", + "hinter", + "ich", + "mich", + "mir", + "ihr", + "ihre", + "ihrem", + "ihren", + "ihrer", + "ihres", + "euch", + "im", + "in", + "indem", + "ins", + "ist", + "jede", + "jedem", + "jeden", + "jeder", + "jedes", + "jene", + "jenem", + "jenen", + "jener", + "jenes", + "jetzt", + "kann", + "kein", + "keine", + "keinem", + "keinen", + "keiner", + "keines", + "können", + "könnte", + "machen", + "man", + "manche", + "manchem", + "manchen", + "mancher", + "manches", + "mein", + "meine", + "meinem", + "meinen", + "meiner", + "meines", + "mit", + "muss", + "musste", + "nach", + "nicht", + "nichts", + "noch", + "nun", + "nur", + "ob", + "oder", + "ohne", + "sehr", + "sein", + "seine", + "seinem", + "seinen", + "seiner", + "seines", + "selbst", + "sich", + "sie", + "ihnen", + "sind", + "so", + "solche", + "solchem", + "solchen", + "solcher", + "solches", + "soll", + "sollte", + "sondern", + "sonst", + "über", + "um", + "und", + "uns", + "unsere", + "unserem", + "unseren", + "unser", + "unseres", + "unter", + "viel", + "vom", + "von", + "vor", + "während", + "war", + "waren", + "warst", + "was", + "weg", + "weil", + "weiter", + "welche", + "welchem", + "welchen", + "welcher", + "welches", + "wenn", + "werde", + "werden", + "wie", + "wieder", + "will", + "wir", + "wird", + "wirst", + "wo", + "wollen", + "wollte", + "würde", + "würden", + "zu", + "zum", + "zur", + "zwar", + "zwischen" +] \ No newline at end of file diff --git a/stopword_lists/spanish_stopwords.json b/stopword_lists/spanish_stopwords.json new file mode 100644 index 0000000..1cf93c0 --- /dev/null +++ b/stopword_lists/spanish_stopwords.json @@ -0,0 +1,315 @@ +[ + "de", + "la", + "que", + "el", + "en", + "y", + "a", + "los", + "del", + "se", + "las", + "por", + "un", + "para", + "con", + "no", + "una", + "su", + "al", + "lo", + "como", + "más", + "pero", + "sus", + "le", + "ya", + "o", + "este", + "sí", + "porque", + "esta", + "entre", + "cuando", + "muy", + "sin", + "sobre", + "también", + "me", + "hasta", + "hay", + "donde", + "quien", + "desde", + "todo", + "nos", + "durante", + "todos", + "uno", + "les", + "ni", + "contra", + "otros", + "ese", + "eso", + "ante", + "ellos", + "e", + "esto", + "mí", + "antes", + "algunos", + "qué", + "unos", + "yo", + "otro", + "otras", + "otra", + "él", + "tanto", + "esa", + "estos", + "mucho", + "quienes", + "nada", + "muchos", + "cual", + "poco", + "ella", + "estar", + "estas", + "algunas", + "algo", + "nosotros", + "mi", + "mis", + "tú", + "te", + "ti", + "tu", + "tus", + "ellas", + "nosotras", + "vosotros", + "vosotras", + "os", + "mío", + "mía", + "míos", + "mías", + "tuyo", + "tuya", + "tuyos", + "tuyas", + "suyo", + "suya", + "suyos", + "suyas", + "nuestro", + "nuestra", + "nuestros", + "nuestras", + "vuestro", + "vuestra", + "vuestros", + "vuestras", + "esos", + "esas", + "estoy", + "estás", + "está", + "estamos", + "estáis", + "están", + "esté", + "estés", + "estemos", + "estéis", + "estén", + "estaré", + "estarás", + "estará", + "estaremos", + "estaréis", + "estarán", + "estaría", + "estarías", + "estaríamos", + "estaríais", + "estarían", + "estaba", + "estabas", + "estábamos", + "estabais", + "estaban", + "estuve", + "estuviste", + "estuvo", + "estuvimos", + "estuvisteis", + "estuvieron", + "estuviera", + "estuvieras", + "estuviéramos", + "estuvierais", + "estuvieran", + "estuviese", + "estuvieses", + "estuviésemos", + "estuvieseis", + "estuviesen", + "estando", + "estado", + "estada", + "estados", + "estadas", + "estad", + "he", + "has", + "ha", + "hemos", + "habéis", + "han", + "haya", + "hayas", + "hayamos", + "hayáis", + "hayan", + "habré", + "habrás", + "habrá", + "habremos", + "habréis", + "habrán", + "habría", + "habrías", + "habríamos", + "habríais", + "habrían", + "había", + "habías", + "habíamos", + "habíais", + "habían", + "hube", + "hubiste", + "hubo", + "hubimos", + "hubisteis", + "hubieron", + "hubiera", + "hubieras", + "hubiéramos", + "hubierais", + "hubieran", + "hubiese", + "hubieses", + "hubiésemos", + "hubieseis", + "hubiesen", + "habiendo", + "habido", + "habida", + "habidos", + "habidas", + "soy", + "eres", + "es", + "somos", + "sois", + "son", + "sea", + "seas", + "seamos", + "seáis", + "sean", + "seré", + "serás", + "será", + "seremos", + "seréis", + "serán", + "sería", + "serías", + "seríamos", + "seríais", + "serían", + "era", + "eras", + "éramos", + "erais", + "eran", + "fui", + "fuiste", + "fue", + "fuimos", + "fuisteis", + "fueron", + "fuera", + "fueras", + "fuéramos", + "fuerais", + "fueran", + "fuese", + "fueses", + "fuésemos", + "fueseis", + "fuesen", + "sintiendo", + "sentido", + "sentida", + "sentidos", + "sentidas", + "siente", + "sentid", + "tengo", + "tienes", + "tiene", + "tenemos", + "tenéis", + "tienen", + "tenga", + "tengas", + "tengamos", + "tengáis", + "tengan", + "tendré", + "tendrás", + "tendrá", + "tendremos", + "tendréis", + "tendrán", + "tendría", + "tendrías", + "tendríamos", + "tendríais", + "tendrían", + "tenía", + "tenías", + "teníamos", + "teníais", + "tenían", + "tuve", + "tuviste", + "tuvo", + "tuvimos", + "tuvisteis", + "tuvieron", + "tuviera", + "tuvieras", + "tuviéramos", + "tuvierais", + "tuvieran", + "tuviese", + "tuvieses", + "tuviésemos", + "tuvieseis", + "tuviesen", + "teniendo", + "tenido", + "tenida", + "tenidos", + "tenidas", + "tened" +] \ No newline at end of file