diff --git a/logs/ct_loc_markers/Blood_report.tsv b/logs/ct_loc_markers/Blood_report.tsv new file mode 100644 index 000000000..a45282d40 --- /dev/null +++ b/logs/ct_loc_markers/Blood_report.tsv @@ -0,0 +1,27 @@ +Terminal AS/ID Terminal AS/label Terminal AS/user_label Terminal CT/ID Terminal CT/label Terminal CT/user_label Markers References +UBERON:0000178 Blood Blood CL:0000767 basophil basophil HGNC:1604, HGNC:2014, HGNC:2298, HGNC:3609, HGNC:4171, HGNC:4855, HGNC:6012, HGNC:6012, HGNC:6017, HGNC:6017, HGNC:7317 +UBERON:0000178 Blood Blood CL:0000771 eosinophil eosinophil HGNC:17890, HGNC:2014, HGNC:2298, HGNC:3609, HGNC:4015, HGNC:4171, HGNC:4855, HGNC:6017, HGNC:6017, HGNC:7317 +UBERON:0000178 Blood Blood CL:0000775 neutrophil neutrophil HGNC:10489, HGNC:11249, HGNC:1645, HGNC:1820, HGNC:3619, HGNC:3623, HGNC:4015, HGNC:500, HGNC:6140, HGNC:6149, HGNC:6149, HGNC:7176, HGNC:8498, HGNC:8904 +UBERON:0000178 Blood Blood CL:0000787 memory B cell memory B cell HGNC:10720, HGNC:11922, HGNC:11922, HGNC:1633, HGNC:1633, HGNC:1643, HGNC:2336, HGNC:5478, HGNC:5480, HGNC:5525, HGNC:5541, HGNC:6210, HGNC:7315, HGNC:7315 DOI:10.1002/jcla.20001 +UBERON:0000178 Blood Blood CL:0000788 naive B cell naive B cell HGNC:11919, HGNC:11922, HGNC:1633, HGNC:1633, HGNC:1645, HGNC:1667, HGNC:2336, HGNC:3612, HGNC:5480, HGNC:5541, HGNC:7154, HGNC:7315, HGNC:7315, HGNC:8619 DOI:10.1038/s41467-019-12464-3 +UBERON:0000178 Blood Blood CL:0000815 regulatory T cell T regulatory HGNC:11910, HGNC:11918, HGNC:12029, HGNC:12156, HGNC:1607, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:2505, HGNC:26838, HGNC:30698, HGNC:6008, HGNC:6024, HGNC:6106, HGNC:6106, HGNC:636, HGNC:6711 +UBERON:0000178 Blood Blood CL:0000816 immature B cell immature B cell HGNC:1633, HGNC:1633, HGNC:5480, HGNC:5541, HGNC:5541, HGNC:7154, HGNC:7315, HGNC:7315, HGNC:8619 DOI:10.3389/fimmu.2012.00302 +UBERON:0000178 Blood Blood CL:0000818 transitional stage B cell transitional B cell HGNC:1004, HGNC:11200, HGNC:11648, HGNC:11922, HGNC:1633, HGNC:1643, HGNC:1645, HGNC:1645, HGNC:1667, HGNC:1685, HGNC:18504, HGNC:2336, HGNC:38476, HGNC:5480, HGNC:7154, HGNC:7315 DOI:10.1073/pnas.172384399 +UBERON:0000178 Blood Blood CL:0000824 mature natural killer cell mature Natural killer HGNC:12253, HGNC:1633, HGNC:1674, HGNC:2064, HGNC:2479, HGNC:3619, HGNC:3619, HGNC:4708, HGNC:4709, HGNC:6373, HGNC:7315, HGNC:7656, HGNC:921, HGNC:9360 +UBERON:0000178 Blood Blood CL:0000840 immature conventional dendritic cell transitional Dendritic Cell (tDC) HGNC:10875, HGNC:10875, HGNC:1628, HGNC:1633, HGNC:1643, HGNC:1674, HGNC:3619, HGNC:4947, HGNC:6012, HGNC:6152, HGNC:7656, HGNC:905, HGNC:905 DOI:10.1182/blood-2004-02-0769 +UBERON:0000178 Blood Blood CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell CD4 naive HGNC:11935, HGNC:12029, HGNC:12156, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:30698, HGNC:6024, HGNC:636, HGNC:6711, HGNC:9666 +UBERON:0000178 Blood Blood CL:0000897 CD4-positive, alpha-beta memory T cell CD4 T cell memory HGNC:1608, HGNC:16647, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:2360, HGNC:26974, HGNC:4709, HGNC:6134, HGNC:9360, HGNC:9666 +UBERON:0000178 Blood Blood CL:0000897 CD4-positive, alpha-beta memory T cell CD4 T cell memory HGNC:11362, HGNC:11892, HGNC:12029, HGNC:12729, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:19129, HGNC:19383, HGNC:6001, HGNC:6015, HGNC:6817, HGNC:7849, HGNC:8109, HGNC:9666, HGNC:9721 +UBERON:0000178 Blood Blood CL:0000897 CD4-positive, alpha-beta memory T cell CD4 T cell memory HGNC:12029, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:2360, HGNC:26974, HGNC:4054, HGNC:537, HGNC:6563, HGNC:9666 +UBERON:0000178 Blood Blood CL:0000900 naive thymus-derived CD8-positive, alpha-beta T cell CD8 naive HGNC:12029, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:6024, HGNC:636, HGNC:9666 +UBERON:0000178 Blood Blood CL:0000938 CD16-negative, CD56-bright natural killer cell, human CD56 bright Natural killer HGNC:10645, HGNC:12253, HGNC:1633, HGNC:1674, HGNC:2064, HGNC:2479, HGNC:3619, HGNC:4711, HGNC:6373, HGNC:7315, HGNC:7656 +UBERON:0000178 Blood Blood CL:0001050 effector CD8-positive, alpha-beta T cell CD8 T cell effector memory HGNC:10627, HGNC:10630, HGNC:12029, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:24961, HGNC:4709, HGNC:9666 +UBERON:0000178 Blood Blood CL:0001054 CD14-positive monocyte CD14 monocyte HGNC:10498, HGNC:10499, HGNC:10720, HGNC:1603, HGNC:1628, HGNC:1628, HGNC:1633, HGNC:1663, HGNC:1674, HGNC:2464, HGNC:2475, HGNC:3613, HGNC:3619, HGNC:3623, HGNC:6152, HGNC:7656 +UBERON:0000178 Blood Blood CL:0001058 plasmacytoid dendritic cell, human Plasmacytoid Dendritic Cell (pDC) HGNC:13258, HGNC:1628, HGNC:1633, HGNC:1674, HGNC:3619, HGNC:4709, HGNC:4947, HGNC:5713, HGNC:6012, HGNC:6152, HGNC:7656, HGNC:8824 DOI:10.1111/bjh.14467 +UBERON:0000178 Blood Blood CL:0001062 effector memory CD8-positive, alpha-beta T cell, terminally differentiated CD8 T cell effector memory CD45RA HGNC:10632, HGNC:12029, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:24961, HGNC:4414, HGNC:5411, HGNC:6378, HGNC:7830, HGNC:9360, HGNC:9666 +UBERON:0000178 Blood Blood CL:0001087 effector memory CD4-positive, alpha-beta T cell, terminally differentiated CD4 T cell effector memory CD45RA HGNC:11362, HGNC:11892, HGNC:12029, HGNC:12729, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:19129, HGNC:19383, HGNC:6001, HGNC:6015, HGNC:6817, HGNC:7849, HGNC:8109, HGNC:9666, HGNC:9721 +UBERON:0000178 Blood Blood CL:0002394 CD141-positive myeloid dendritic cell dendritic cell type 1 (DC1) HGNC:11784, HGNC:1625, HGNC:1628, HGNC:1633, HGNC:1636, HGNC:1674, HGNC:26705, HGNC:26705, HGNC:3619, HGNC:4947, HGNC:5951, HGNC:6012, HGNC:6152, HGNC:7656 DOI:10.3109/10428194.2013.781167 +UBERON:0000178 Blood Blood CL:0002396 CD14-low, CD16-positive monocyte CD16 monocyte HGNC:13378, HGNC:14189, HGNC:1628, HGNC:1633, HGNC:16642, HGNC:1674, HGNC:24149, HGNC:2558, HGNC:2561, HGNC:3619, HGNC:3619, HGNC:5414, HGNC:7656 +UBERON:0000178 Blood Blood CL:0002399 CD1c-positive myeloid dendritic cell dendritic cell type 2 (DC2) HGNC:11784, HGNC:1628, HGNC:1633, HGNC:1636, HGNC:1636, HGNC:1674, HGNC:16916, HGNC:3609, HGNC:3618, HGNC:3619, HGNC:4940, HGNC:4943, HGNC:4947, HGNC:6012, HGNC:6152, HGNC:7656 DOI:10.1016/j.immuni.2017.04.019 +UBERON:0000178 Blood Blood CL:0002399 CD1c-positive myeloid dendritic cell dendritic cell type 3 (DC3) HGNC:10498, HGNC:10499, HGNC:11784, HGNC:1628, HGNC:1631, HGNC:1633, HGNC:1636, HGNC:1636, HGNC:1663, HGNC:1674, HGNC:16916, HGNC:3609, HGNC:3619, HGNC:4947, HGNC:6012, HGNC:6152, HGNC:7656 DOI:10.1002/cyto.a.23724 +UBERON:0000178 Blood Blood CL:0002437 mature CD8 single-positive thymocyte mature CD8 T cell HGNC:10632, HGNC:10720, HGNC:11922, HGNC:12276, HGNC:1608, HGNC:1667, HGNC:1674, HGNC:1678, HGNC:16830, HGNC:1706, HGNC:1706, HGNC:3068, HGNC:4710, HGNC:4711, HGNC:6380, HGNC:9666 diff --git a/logs/ct_loc_markers/Bone-Marrow_report.tsv b/logs/ct_loc_markers/Bone-Marrow_report.tsv new file mode 100644 index 000000000..5be86f69f --- /dev/null +++ b/logs/ct_loc_markers/Bone-Marrow_report.tsv @@ -0,0 +1,47 @@ +Terminal AS/ID Terminal AS/label Terminal AS/user_label Terminal CT/ID Terminal CT/label Terminal CT/user_label Markers References +UBERON:0002371 Bone marrow Bone marrow CL:0000037 hematopoietic stem cell hemopoietic stem cell HGNC:1036, HGNC:11801, HGNC:1628, HGNC:1633, HGNC:1639, HGNC:1662, HGNC:1667, HGNC:1674, HGNC:2356, HGNC:3619, HGNC:4702, HGNC:4977, HGNC:4977, HGNC:7136, HGNC:7656, HGNC:7945, HGNC:894, HGNC:9454, HGNC:9666 +UBERON:0002371 Bone marrow Bone marrow CL:0000049 common myeloid progenitor common myeloid progenitor HGNC:1628, HGNC:1662, HGNC:1667, HGNC:1674, HGNC:24435, HGNC:3311, HGNC:3619, HGNC:3765, HGNC:4171, HGNC:5154, HGNC:6012, HGNC:7028, HGNC:7656, HGNC:9666 DOI:10.1038/ni.1889 +UBERON:0002371 Bone marrow Bone marrow CL:0000050 megakaryocyte-erythroid progenitor cell megakaryocyte-erythroid-mast cell progenitor HGNC:11245, HGNC:15879, HGNC:1628, HGNC:1662, HGNC:1662, HGNC:1667, HGNC:1674, HGNC:29109, HGNC:31397, HGNC:3619, HGNC:3765, HGNC:4170, HGNC:4171, HGNC:5992, HGNC:6012, HGNC:7656, HGNC:9666 DOI:10.1038/ni.1889 +UBERON:0002371 Bone marrow Bone marrow CL:0000051 common lymphoid progenitor common lymphoid progenitor HGNC:12560, HGNC:12749, HGNC:1628, HGNC:16505, HGNC:1662, HGNC:1667, HGNC:1674, HGNC:186, HGNC:3619, HGNC:6024, HGNC:7203, HGNC:7656, HGNC:9352 +UBERON:0002371 Bone marrow Bone marrow CL:0000084 T cell T lymphocytes HGNC:10632, HGNC:12276, HGNC:1633, HGNC:1674, HGNC:16830, HGNC:1706, HGNC:3068, HGNC:3619, HGNC:4710, HGNC:4711, HGNC:6380, HGNC:7315, HGNC:7656 +UBERON:0002371 Bone marrow Bone marrow CL:0000097 mast cell mast cell HGNC:12019, HGNC:17890, HGNC:2014, HGNC:2298, HGNC:3609, HGNC:4171, HGNC:4855, HGNC:6017, HGNC:6017, HGNC:6024, HGNC:6342, HGNC:7317 +UBERON:0002371 Bone marrow Bone marrow CL:0000553 megakaryocyte progenitor cell early Megakaryocyte HGNC:10690, HGNC:2067, HGNC:3609, HGNC:3618, HGNC:4171, HGNC:4439, HGNC:6138, HGNC:6156, HGNC:8861, HGNC:9070 +UBERON:0002371 Bone marrow Bone marrow CL:0000556 megakaryocyte Megakaryocyte HGNC:10690, HGNC:18874, HGNC:24356, HGNC:3618, HGNC:4439, HGNC:4444, HGNC:6138, HGNC:6138, HGNC:6156, HGNC:8861, HGNC:8861, HGNC:9240 +UBERON:0002371 Bone marrow Bone marrow CL:0000557 granulocyte monocyte progenitor cell granulocyte-macrophage progenitor cell HGNC:10576, HGNC:1455, HGNC:1628, HGNC:1662, HGNC:1662, HGNC:1667, HGNC:1674, HGNC:3619, HGNC:3765, HGNC:6012, HGNC:7218, HGNC:7656, HGNC:913, HGNC:9666 DOI:10.1038/ni.1889 +UBERON:0002371 Bone marrow Bone marrow CL:0000559 promonocyte promonocyte HGNC:10494, HGNC:10496, HGNC:1603, HGNC:1603, HGNC:1628, HGNC:1662, HGNC:1667, HGNC:2475, HGNC:2558, HGNC:28874, HGNC:31713, HGNC:3613, HGNC:6012, HGNC:6342, HGNC:7154 +UBERON:0002371 Bone marrow Bone marrow CL:0000576 monocyte monocyte HGNC:11241, HGNC:1633, HGNC:1662, HGNC:1667, HGNC:1674, HGNC:1834, HGNC:31713, HGNC:3613, HGNC:3765, HGNC:5358, HGNC:6012, HGNC:6348, HGNC:7154, HGNC:7656, HGNC:9666 +UBERON:0002371 Bone marrow Bone marrow CL:0000764 erythroid lineage cell early erythroid HGNC:11529, HGNC:11763, HGNC:1663, HGNC:1663, HGNC:31397, HGNC:3349, HGNC:4170, HGNC:4702, HGNC:607, HGNC:6251, HGNC:6342, HGNC:6345, HGNC:7553, HGNC:9666 DOI:10.1371/journal.pone.0162209 +UBERON:0002371 Bone marrow Bone marrow CL:0000764 erythroid lineage cell mid erythroid HGNC:10006, HGNC:10008, HGNC:11272, HGNC:11763, HGNC:1663, HGNC:1663, HGNC:21256, HGNC:3349, HGNC:4702, HGNC:6342, HGNC:6345, HGNC:9666 +UBERON:0002371 Bone marrow Bone marrow CL:0000764 erythroid lineage cell late erythroid HGNC:1093, HGNC:11763, HGNC:1663, HGNC:19911, HGNC:24040, HGNC:3349, HGNC:397, HGNC:4702, HGNC:4824, HGNC:4827, HGNC:4831, HGNC:6342, HGNC:9666 +UBERON:0002371 Bone marrow Bone marrow CL:0000767 basophil basophil HGNC:2014, HGNC:2298, HGNC:3609, HGNC:4171, HGNC:4855, HGNC:6012, HGNC:6017, HGNC:6017, HGNC:6024, HGNC:7317 +UBERON:0002371 Bone marrow Bone marrow CL:0000771 eosinophil eosinophil HGNC:1604, HGNC:17890, HGNC:2014, HGNC:2298, HGNC:3609, HGNC:4171, HGNC:4855, HGNC:6012, HGNC:6017, HGNC:6017, HGNC:7317 +UBERON:0002371 Bone marrow Bone marrow CL:0000775 neutrophil neutrophil HGNC:10489, HGNC:11249, HGNC:1820, HGNC:2334, HGNC:3613, HGNC:3619, HGNC:3623, HGNC:4015, HGNC:500, HGNC:6140, HGNC:6149, HGNC:6149, HGNC:7176, HGNC:8498, HGNC:8904, HGNC:9053 +UBERON:0002371 Bone marrow Bone marrow CL:0000786 plasma cell plasma cell HGNC:10658, HGNC:10658, HGNC:11913, HGNC:11922, HGNC:14236, HGNC:1633, HGNC:1645, HGNC:1667, HGNC:2336, HGNC:23400, HGNC:30125, HGNC:5478, HGNC:5480, HGNC:5525, HGNC:5716 DOI:10.1073/pnas.172384399 +UBERON:0002371 Bone marrow Bone marrow CL:0000787 memory B cell memory B cell HGNC:10720, HGNC:11922, HGNC:11922, HGNC:1633, HGNC:1633, HGNC:1645, HGNC:1667, HGNC:2336, HGNC:5478, HGNC:5480, HGNC:5525, HGNC:6210, HGNC:7154, HGNC:7315, HGNC:7315 DOI:10.1002/jcla.20001 +UBERON:0002371 Bone marrow Bone marrow CL:0000788 naive B cell naive B cell HGNC:10658, HGNC:11919, HGNC:11922, HGNC:1633, HGNC:1633, HGNC:1645, HGNC:1667, HGNC:2336, HGNC:3612, HGNC:5480, HGNC:5541, HGNC:7315, HGNC:8619 DOI:10.1038/s41467-019-12464-3 +UBERON:0002371 Bone marrow Bone marrow CL:0000815 regulatory T cell T regulatory HGNC:11910, HGNC:11918, HGNC:12029, HGNC:12156, HGNC:1607, HGNC:26838, HGNC:30698, HGNC:6024, HGNC:6106, HGNC:636, HGNC:6711 +UBERON:0002371 Bone marrow Bone marrow CL:0000816 immature B cell immature B cell HGNC:11922, HGNC:1633, HGNC:1633, HGNC:1643, HGNC:2336, HGNC:5480, HGNC:5541, HGNC:5541, HGNC:7315, HGNC:7315, HGNC:8619 DOI:10.3389/fimmu.2012.00302 +UBERON:0002371 Bone marrow Bone marrow CL:0000817 precursor B cell precursor B cell HGNC:1633, HGNC:1633, HGNC:1662, HGNC:5480, HGNC:5541, HGNC:6024, HGNC:7154, HGNC:8619 DOI:10.1016/j.exphem.2018.09.004 +UBERON:0002371 Bone marrow Bone marrow CL:0000818 transitional stage B cell transitional B cell HGNC:1004, HGNC:11200, HGNC:11648, HGNC:11784, HGNC:1628, HGNC:1633, HGNC:1636, HGNC:1645, HGNC:1674, HGNC:18504, HGNC:26705, HGNC:3619, HGNC:38476, HGNC:6012, HGNC:6152, HGNC:7656 DOI:10.1073/pnas.172384399 +UBERON:0002371 Bone marrow Bone marrow CL:0000824 mature natural killer cell mature Natural killer HGNC:12253, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:2064, HGNC:2479, HGNC:2505, HGNC:3619, HGNC:4708, HGNC:4709, HGNC:6008, HGNC:6106, HGNC:6373, HGNC:9360 +UBERON:0002371 Bone marrow Bone marrow CL:0000826 pro-B cell pro B progenitor HGNC:12709, HGNC:1633, HGNC:1662, HGNC:2983, HGNC:6024, HGNC:7154, HGNC:7154, HGNC:9831 DOI:10.1073/pnas.172384399 +UBERON:0002371 Bone marrow Bone marrow CL:0000836 promyelocyte promyelocyte HGNC:11249, HGNC:1820, HGNC:2334, HGNC:2532, HGNC:3309, HGNC:3613, HGNC:3619, HGNC:4015, HGNC:500, HGNC:6140, HGNC:6149, HGNC:7218, HGNC:9053, HGNC:913, HGNC:9495 +UBERON:0002371 Bone marrow Bone marrow CL:0000837 hematopoietic multipotent progenitor cell multipotent progenitor cell HGNC:11245, HGNC:11801, HGNC:1628, HGNC:1633, HGNC:1639, HGNC:1662, HGNC:1662, HGNC:1667, HGNC:1674, HGNC:3619, HGNC:3765, HGNC:4702, HGNC:7656, HGNC:9666 +UBERON:0002371 Bone marrow Bone marrow CL:0000840 immature conventional dendritic cell transitional Dendritic Cell HGNC:10875, HGNC:11763, HGNC:1643, HGNC:1663, HGNC:3349, HGNC:4702, HGNC:6342, HGNC:905, HGNC:9666 DOI:10.1182/blood-2004-02-0769 +UBERON:0002371 Bone marrow Bone marrow CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell CD4 naive HGNC:11935, HGNC:12029, HGNC:12156, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:30698, HGNC:6024, HGNC:636, HGNC:6711, HGNC:9666 +UBERON:0002371 Bone marrow Bone marrow CL:0000897 CD4-positive, alpha-beta memory T cell CD4 T cell memory HGNC:12029, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:2360, HGNC:26974, HGNC:4054, HGNC:537, HGNC:6563, HGNC:9666 +UBERON:0002371 Bone marrow Bone marrow CL:0000897 CD4-positive, alpha-beta memory T cell CD4 T cell memory HGNC:11362, HGNC:11892, HGNC:12029, HGNC:12729, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:19129, HGNC:19383, HGNC:6001, HGNC:6015, HGNC:6817, HGNC:7849, HGNC:8109, HGNC:9666, HGNC:9721 +UBERON:0002371 Bone marrow Bone marrow CL:0000900 naive thymus-derived CD8-positive, alpha-beta T cell CD8 naive HGNC:12029, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:6024, HGNC:636, HGNC:9666 +UBERON:0002371 Bone marrow Bone marrow CL:0000909 CD8-positive, alpha-beta memory T cell CD8 T cell memory HGNC:1608, HGNC:16647, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:2360, HGNC:26974, HGNC:4709, HGNC:6134, HGNC:9360, HGNC:9666 +UBERON:0002371 Bone marrow Bone marrow CL:0000913 effector memory CD8-positive, alpha-beta T cell CD8 T cell effector memory HGNC:10627, HGNC:10630, HGNC:12029, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:24961, HGNC:4709, HGNC:9666 +UBERON:0002371 Bone marrow Bone marrow CL:0000936 early lymphoid progenitor lympho-myeloid progenitor cell HGNC:11200, HGNC:11491, HGNC:13221, HGNC:1628, HGNC:1633, HGNC:1639, HGNC:1662, HGNC:1662, HGNC:1667, HGNC:1674, HGNC:3619, HGNC:4702, HGNC:5713, HGNC:6010, HGNC:7656, HGNC:9666 DOI:10.1038/ni.1889 +UBERON:0002371 Bone marrow Bone marrow CL:0000938 CD16-negative, CD56-bright natural killer cell, human CD56 bright Natural Killer HGNC:10645, HGNC:12253, HGNC:1633, HGNC:1674, HGNC:2064, HGNC:2479, HGNC:3619, HGNC:4711, HGNC:6373, HGNC:7315, HGNC:7656, HGNC:921 +UBERON:0002371 Bone marrow Bone marrow CL:0000990 conventional dendritic cell dendritic cell type 2 HGNC:11784, HGNC:1628, HGNC:1633, HGNC:1636, HGNC:1636, HGNC:1674, HGNC:16916, HGNC:3609, HGNC:3618, HGNC:3619, HGNC:4940, HGNC:4943, HGNC:6012, HGNC:6152, HGNC:7656 DOI:10.1016/j.immuni.2017.04.019 +UBERON:0002371 Bone marrow Bone marrow CL:0000990 conventional dendritic cell dendritic cell type 1 HGNC:11784, HGNC:1625, HGNC:1628, HGNC:1633, HGNC:1636, HGNC:1674, HGNC:26705, HGNC:3619, HGNC:5951, HGNC:6012, HGNC:6152, HGNC:7656 DOI:10.3109/10428194.2013.781167 +UBERON:0002371 Bone marrow Bone marrow CL:0001054 CD14-positive monocyte CD14 monocyte HGNC:10498, HGNC:10499, HGNC:1628, HGNC:1628, HGNC:1633, HGNC:1674, HGNC:2464, HGNC:2475, HGNC:2558, HGNC:2561, HGNC:3619, HGNC:3623, HGNC:7656 +UBERON:0002371 Bone marrow Bone marrow CL:0001056 dendritic cell, human dendritic cell type 3 HGNC:10498, HGNC:10499, HGNC:13258, HGNC:1628, HGNC:1631, HGNC:1633, HGNC:1636, HGNC:1663, HGNC:1674, HGNC:16916, HGNC:3609, HGNC:3619, HGNC:6012, HGNC:6152, HGNC:7656 DOI:10.1002/cyto.a.23724 +UBERON:0002371 Bone marrow Bone marrow CL:0001058 plasmacytoid dendritic cell, human Plasmacytoid Dendritic Cell HGNC:10875, HGNC:1628, HGNC:1633, HGNC:1674, HGNC:3619, HGNC:4709, HGNC:5713, HGNC:6012, HGNC:6152, HGNC:7656, HGNC:8824, HGNC:905 DOI:10.1111/bjh.14467 +UBERON:0002371 Bone marrow Bone marrow CL:0001062 effector memory CD8-positive, alpha-beta T cell, terminally differentiated CD8 T cell effector memory CD45RA HGNC:10632, HGNC:10720, HGNC:11922, HGNC:12029, HGNC:1608, HGNC:1667, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:24961, HGNC:4414, HGNC:5411, HGNC:6378, HGNC:7830, HGNC:9360, HGNC:9666 +UBERON:0002371 Bone marrow Bone marrow CL:0001087 effector memory CD4-positive, alpha-beta T cell, terminally differentiated CD4 T cell effector memory CD45RA HGNC:11362, HGNC:11892, HGNC:12029, HGNC:12729, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:19129, HGNC:19383, HGNC:6001, HGNC:6015, HGNC:6817, HGNC:7849, HGNC:8109, HGNC:9666, HGNC:9721 +UBERON:0002371 Bone marrow Bone marrow CL:0002193 myelocyte myelocyte HGNC:11249, HGNC:1472, HGNC:1645, HGNC:1820, HGNC:1820, HGNC:3383, HGNC:4015, HGNC:500, HGNC:6140, HGNC:6149, HGNC:6526, HGNC:6720 +UBERON:0002371 Bone marrow Bone marrow CL:0002396 CD14-low, CD16-positive monocyte CD16 monocyte HGNC:13378, HGNC:14189, HGNC:1628, HGNC:1662, HGNC:16642, HGNC:1667, HGNC:24149, HGNC:28874, HGNC:31713, HGNC:3613, HGNC:3619, HGNC:5414, HGNC:6012, HGNC:6342, HGNC:7154 diff --git a/logs/ct_loc_markers/Brain_report.tsv b/logs/ct_loc_markers/Brain_report.tsv new file mode 100644 index 000000000..f343ab1c4 --- /dev/null +++ b/logs/ct_loc_markers/Brain_report.tsv @@ -0,0 +1,436 @@ +Terminal AS/ID Terminal AS/label Terminal AS/user_label Terminal CT/ID Terminal CT/label Terminal CT/user_label Markers References +UBERON:0000955 brain brain CL:0000057 fibroblast fibroblast HGNC:1346, HGNC:2198, HGNC:3601 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:0000057 fibroblast fibroblast HGNC:2192, HGNC:30927 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:0000057 fibroblast fibroblast HGNC:11595, HGNC:6715 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:0000057 fibroblast fibroblast HGNC:1072, HGNC:1346 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:0000057 fibroblast fibroblast HGNC:1077, 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CL:0000065 ependymal cell ependymal cell HGNC:1487 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:0000065 ependymal cell ependymal cell HGNC:12261, HGNC:27287, HGNC:8239 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:0000065 ependymal cell ependymal cell HGNC:8239 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:0000065 ependymal cell ependymal cell HGNC:12405, HGNC:37261 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:0000065 ependymal cell ependymal cell HGNC:28395, HGNC:37261 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:0000084 T cell T cell HGNC:1639, HGNC:21569 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:0000127 astrocyte astrocyte HGNC:18374, HGNC:19719, HGNC:27363, HGNC:42700 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:0000127 astrocyte astrocyte HGNC:42700, HGNC:4453, HGNC:5318 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:0000127 astrocyte astrocyte HGNC:44915, 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CL:0000128 oligodendrocyte oligodendrocyte HGNC:20707, HGNC:23091, HGNC:23723, HGNC:7189 DOI:10.1101/2022.10.12.511898 +UBERON:0001898 hypothalamus hypothalamus CL:0000128 oligodendrocyte oligodendrocyte HGNC:23091, HGNC:43959 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:0000128 oligodendrocyte oligodendrocyte HGNC:11740, HGNC:14082, HGNC:23091, HGNC:29268, HGNC:7189 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:0000128 oligodendrocyte oligodendrocyte HGNC:20707, HGNC:3432, HGNC:9086 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:3531, HGNC:7228 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:18124, HGNC:54124, HGNC:54229 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:18124, HGNC:19191, HGNC:50913 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:0000129 microglial cell microglia 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cortical neuron extratelencephalic-projecting glutamatergic cortical neuron HGNC:41926 DOI:10.1101/2022.10.12.511898 +UBERON:0000956 cerebral cortex cerebral cortex CL:4023009 extratelencephalic-projecting glutamatergic cortical neuron extratelencephalic-projecting glutamatergic cortical neuron HGNC:48639, HGNC:53354 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:4023009 extratelencephalic-projecting glutamatergic cortical neuron extratelencephalic-projecting glutamatergic cortical neuron HGNC:2445, HGNC:6694 DOI:10.1101/2022.10.12.511898 +UBERON:0000956 cerebral cortex cerebral cortex CL:4023012 near-projecting glutamatergic cortical neuron near-projecting glutamatergic cortical neuron HGNC:1663, HGNC:23631, HGNC:43910 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023012 near-projecting glutamatergic cortical neuron near-projecting glutamatergic cortical neuron HGNC:5009, HGNC:52844 DOI:10.1101/2022.10.12.511898 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cortical neuron HGNC:11528, HGNC:26534, HGNC:41081 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023012 near-projecting glutamatergic cortical neuron near-projecting glutamatergic cortical neuron HGNC:16379, HGNC:24665 DOI:10.1101/2022.10.12.511898 +UBERON:0000956 cerebral cortex cerebral cortex CL:4023012 near-projecting glutamatergic cortical neuron near-projecting glutamatergic cortical neuron HGNC:43910 DOI:10.1101/2022.10.12.511898 +UBERON:0000956 cerebral cortex cerebral cortex CL:4023012 near-projecting glutamatergic cortical neuron near-projecting glutamatergic cortical neuron HGNC:22128 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023012 near-projecting glutamatergic cortical neuron near-projecting glutamatergic cortical neuron HGNC:2217, HGNC:23631, HGNC:31401 DOI:10.1101/2022.10.12.511898 +UBERON:0000956 cerebral cortex cerebral cortex CL:4023012 near-projecting glutamatergic cortical neuron near-projecting glutamatergic cortical neuron HGNC:277, HGNC:43910, HGNC:9229, HGNC:9682 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023039 amygdala excitatory neuron amygdala excitatory neuron HGNC:11528, HGNC:28020, HGNC:4525 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023039 amygdala excitatory neuron amygdala excitatory neuron HGNC:11764, HGNC:6483 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023039 amygdala excitatory neuron amygdala excitatory neuron HGNC:11528, HGNC:21063 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023039 amygdala excitatory neuron amygdala excitatory neuron HGNC:16709, HGNC:16953, HGNC:52626 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023039 amygdala excitatory neuron amygdala excitatory neuron HGNC:29399, HGNC:4525, HGNC:48724, HGNC:9595 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023039 amygdala excitatory neuron amygdala excitatory neuron HGNC:18549, HGNC:9595 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023039 amygdala excitatory neuron amygdala excitatory neuron HGNC:16953, HGNC:29426 DOI:10.1101/2022.10.12.511898 +UBERON:0002600 limbic lobe limbic lobe CL:4023039 amygdala excitatory neuron amygdala excitatory neuron HGNC:52695 DOI:10.1101/2022.10.12.511898 +UBERON:0000956 cerebral cortex cerebral cortex CL:4023039 amygdala excitatory neuron amygdala excitatory neuron HGNC:2358, HGNC:52895 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023039 amygdala excitatory neuron amygdala excitatory neuron HGNC:26534 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023039 amygdala excitatory neuron amygdala excitatory neuron HGNC:11764, HGNC:13361, HGNC:30367 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023039 amygdala excitatory neuron amygdala excitatory neuron HGNC:14940, HGNC:26534 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023039 amygdala excitatory neuron Amygdala excitatory neuron HGNC:10593, HGNC:23392, HGNC:44222, HGNC:9609 DOI:10.1101/2022.10.12.511898 +UBERON:0000956 cerebral cortex cerebral cortex CL:4023039 amygdala excitatory neuron amygdala excitatory neuron HGNC:53147 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023039 amygdala excitatory neuron amygdala excitatory neuron HGNC:1753, HGNC:19718, HGNC:20779, HGNC:7001, HGNC:9446 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023039 amygdala excitatory neuron amygdala excitatory neuron HGNC:17318, HGNC:24323, HGNC:6690 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023039 amygdala excitatory neuron amygdala excitatory neuron HGNC:14222, HGNC:14615 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023039 amygdala excitatory neuron amygdala excitatory neuron HGNC:18374, HGNC:3372, HGNC:9957 DOI:10.1101/2022.10.12.511898 +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:4023057 cerebellar inhibitory GABAergic interneuron cerebellar inhibitory HGNC:16941, HGNC:20693, HGNC:2464, HGNC:53587 DOI:10.1101/2022.10.12.511898 +UBERON:0002037 cerebellum cerebellum CL:4023057 cerebellar inhibitory GABAergic interneuron cerebellar inhibitory HGNC:16941, HGNC:33609, HGNC:9674 DOI:10.1101/2022.10.12.511898 +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:4023057 cerebellar inhibitory GABAergic interneuron cerebellar inhibitory HGNC:1077, HGNC:11743, HGNC:53587, HGNC:8029 DOI:10.1101/2022.10.12.511898 +UBERON:0002037 cerebellum cerebellum CL:4023057 cerebellar inhibitory GABAergic interneuron cerebellar inhibitory HGNC:16941 DOI:10.1101/2022.10.12.511898 +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:4023057 cerebellar inhibitory GABAergic interneuron cerebellar inhibitory HGNC:24330 DOI:10.1101/2022.10.12.511898 +UBERON:0002037 cerebellum cerebellum CL:4023057 cerebellar inhibitory GABAergic interneuron cerebellar inhibitory HGNC:28751 DOI:10.1101/2022.10.12.511898 +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:4023057 cerebellar inhibitory GABAergic interneuron cerebellar inhibitory HGNC:16438, HGNC:26256 DOI:10.1101/2022.10.12.511898 +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:4023057 cerebellar inhibitory GABAergic interneuron cerebellar inhibitory HGNC:11051, HGNC:21184, HGNC:28867 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forebrain CL:4023059 differentiation-committed oligodendrocyte precursor committed oligodendrocyte precursor cell HGNC:20675, HGNC:23319, HGNC:51662 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:4023059 differentiation-committed oligodendrocyte precursor committed oligodendrocyte precursor cell HGNC:20707 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:4023059 differentiation-committed oligodendrocyte precursor committed oligodendrocyte precursor cell HGNC:4471, HGNC:9142, HGNC:974 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:4023059 differentiation-committed oligodendrocyte precursor committed oligodendrocyte precursor cell HGNC:11740 DOI:10.1101/2022.10.12.511898 +UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:20303, HGNC:2210 DOI:10.1101/2022.10.12.511898 +UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:21184, HGNC:2210, HGNC:50507 DOI:10.1101/2022.10.12.511898 +UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:14638, HGNC:49076 DOI:10.1101/2022.10.12.511898 +UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:11963 DOI:10.1101/2022.10.12.511898 +UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:50507 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:16953 DOI:10.1101/2022.10.12.511898 +UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:27823 DOI:10.1101/2022.10.12.511898 +UBERON:0000956 cerebral cortex cerebral cortex CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:12810, HGNC:2445 DOI:10.1101/2022.10.12.511898 +UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:20821, HGNC:2210 DOI:10.1101/2022.10.12.511898 +UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:27823, HGNC:8038 DOI:10.1101/2022.10.12.511898 +UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:6140 DOI:10.1101/2022.10.12.511898 +UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:14454, HGNC:6140 DOI:10.1101/2022.10.12.511898 +UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:8038 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:13542, HGNC:2654, HGNC:50507 DOI:10.1101/2022.10.12.511898 +UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:20821, HGNC:29426, HGNC:50507, HGNC:52895 DOI:10.1101/2022.10.12.511898 +UBERON:0002600 limbic lobe limbic lobe CL:4023061 hippocampal CA4 neuron hippocampal CA4 neuron HGNC:14866, HGNC:2210, HGNC:27405, HGNC:6140 DOI:10.1101/2022.10.12.511898 +UBERON:0002600 limbic lobe limbic lobe CL:4023061 hippocampal CA4 neuron hippocampal CA4 neuron HGNC:10327, HGNC:24961 DOI:10.1101/2022.10.12.511898 +UBERON:0002600 limbic lobe limbic lobe CL:4023061 hippocampal CA4 neuron hippocampal CA4 neuron HGNC:14866, HGNC:16941, HGNC:25588, HGNC:45056 DOI:10.1101/2022.10.12.511898 +UBERON:0002600 limbic lobe limbic lobe CL:4023061 hippocampal CA4 neuron hippocampal CA4 neuron HGNC:13542, HGNC:1514, HGNC:6140 DOI:10.1101/2022.10.12.511898 +UBERON:0002600 limbic lobe limbic lobe CL:4023061 hippocampal CA4 neuron hippocampal CA4 neuron HGNC:18695, HGNC:8038 DOI:10.1101/2022.10.12.511898 +UBERON:0002600 limbic lobe limbic lobe CL:4023061 hippocampal CA4 neuron hippocampal CA4 neuron HGNC:25396, HGNC:4893 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:4023061 hippocampal CA4 neuron hippocampal CA4 neuron HGNC:21555, HGNC:2210, HGNC:50507 DOI:10.1101/2022.10.12.511898 +UBERON:0002600 limbic lobe limbic lobe CL:4023061 hippocampal CA4 neuron hippocampal CA4 neuron HGNC:53062, HGNC:6140 DOI:10.1101/2022.10.12.511898 +UBERON:0002600 limbic lobe limbic lobe CL:4023061 hippocampal CA4 neuron hippocampal CA4 neuron HGNC:53062 DOI:10.1101/2022.10.12.511898 +UBERON:0002600 limbic lobe limbic lobe CL:4023062 dentate gyrus neuron hippocampal dentate gyrus neuron HGNC:12405, HGNC:43436, HGNC:49076 DOI:10.1101/2022.10.12.511898 +UBERON:0002600 limbic lobe limbic lobe CL:4023062 dentate gyrus neuron hippocampal dentate gyrus neuron HGNC:18695, HGNC:53147 DOI:10.1101/2022.10.12.511898 +UBERON:0002600 limbic lobe limbic lobe CL:4023062 dentate gyrus neuron hippocampal dentate gyrus neuron HGNC:12405, HGNC:277 DOI:10.1101/2022.10.12.511898 +UBERON:0002600 limbic lobe limbic lobe CL:4023062 dentate gyrus neuron hippocampal dentate gyrus neuron HGNC:16953 DOI:10.1101/2022.10.12.511898 +UBERON:0002600 limbic lobe limbic lobe CL:4023062 dentate gyrus neuron hippocampal dentate gyrus neuron HGNC:1955, HGNC:32411 DOI:10.1101/2022.10.12.511898 +UBERON:0002600 limbic lobe limbic lobe CL:4023062 dentate gyrus neuron hippocampal dentate gyrus neuron HGNC:25588 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023063 medial ganglionic eminence derived interneuron MGE derived interneuron HGNC:11521, HGNC:16231, HGNC:7955 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023063 medial ganglionic eminence derived interneuron MGE derived interneuron HGNC:11517, HGNC:26373, HGNC:7603 DOI:10.1101/2022.10.12.511898 +UBERON:0000956 cerebral cortex cerebral cortex CL:4023063 medial ganglionic eminence derived interneuron MGE derived interneuron HGNC:18374, HGNC:26270 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cerebral cortex cerebral cortex CL:4023063 medial ganglionic eminence derived interneuron MGE derived interneuron HGNC:1434, HGNC:3522, HGNC:8831 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023063 medial ganglionic eminence derived interneuron MGE derived interneuron HGNC:10723, HGNC:11329, HGNC:16421, HGNC:20754, HGNC:20866 DOI:10.1101/2022.10.12.511898 +UBERON:0000956 cerebral cortex cerebral cortex CL:4023063 medial ganglionic eminence derived interneuron MGE derived interneuron HGNC:11517, HGNC:2705 DOI:10.1101/2022.10.12.511898 +UBERON:0002600 limbic lobe limbic lobe CL:4023063 medial ganglionic eminence derived interneuron MGE derived interneuron HGNC:2210, HGNC:3166 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023063 medial ganglionic eminence derived interneuron MGE derived interneuron HGNC:11329, HGNC:52844, HGNC:6776 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023063 medial ganglionic eminence derived interneuron MGE derived interneuron HGNC:6211 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023063 medial ganglionic eminence derived interneuron MGE derived interneuron HGNC:11329, HGNC:12338, HGNC:2464 DOI:10.1101/2022.10.12.511898 +UBERON:0000956 cerebral cortex cerebral cortex CL:4023063 medial ganglionic eminence derived interneuron MGE derived interneuron HGNC:13841, HGNC:42435, HGNC:9454 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023064 caudal ganglionic eminence derived interneuron CGE interneuron HGNC:12693, HGNC:15985 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023064 caudal ganglionic eminence derived interneuron CGE interneuron HGNC:10640, HGNC:11521, HGNC:19179, HGNC:28751 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023064 caudal ganglionic eminence derived interneuron CGE interneuron HGNC:10479, HGNC:12693, HGNC:2355 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:4023064 caudal ganglionic eminence derived interneuron CGE interneuron HGNC:12693, HGNC:17265 DOI:10.1101/2022.10.12.511898 +UBERON:0000956 cerebral cortex cerebral cortex CL:4023064 caudal ganglionic eminence derived interneuron CGE interneuron HGNC:14940, HGNC:2355, HGNC:7945 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023064 caudal ganglionic eminence derived interneuron CGE interneuron HGNC:3179, HGNC:7945 DOI:10.1101/2022.10.12.511898 +UBERON:0000956 cerebral cortex cerebral cortex CL:4023064 caudal ganglionic eminence derived interneuron CGE interneuron HGNC:12693, HGNC:1951, HGNC:3763 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023064 caudal ganglionic eminence derived interneuron CGE interneuron HGNC:11521 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023064 caudal ganglionic eminence derived interneuron CGE interneuron HGNC:10257, HGNC:10640, HGNC:1373, HGNC:2355 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:4023064 caudal ganglionic eminence derived interneuron CGE interneuron HGNC:17178, HGNC:3522, HGNC:7569 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023064 caudal ganglionic eminence derived interneuron CGE interneuron HGNC:5196, HGNC:6111 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023064 caudal ganglionic eminence derived interneuron CGE interneuron HGNC:12693, HGNC:8831 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023064 caudal ganglionic eminence derived interneuron CGE interneuron HGNC:10640, HGNC:14268, HGNC:2500 DOI:10.1101/2022.10.12.511898 +UBERON:0000956 cerebral cortex cerebral cortex CL:4023064 caudal ganglionic eminence derived interneuron CGE interneuron HGNC:10640, HGNC:10725, HGNC:19266, HGNC:41081 DOI:10.1101/2022.10.12.511898 +UBERON:0000956 cerebral cortex cerebral cortex CL:4023064 caudal ganglionic eminence derived interneuron CGE interneuron HGNC:15478 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023064 caudal ganglionic eminence derived interneuron CGE interneuron HGNC:3179, HGNC:5297 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023064 caudal ganglionic eminence derived interneuron CGE interneuron HGNC:6483 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023064 caudal ganglionic eminence derived interneuron CGE interneuron HGNC:10640, HGNC:19191, HGNC:25396 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023064 caudal ganglionic eminence derived interneuron CGE interneuron HGNC:18081, HGNC:1960, HGNC:2731 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023064 caudal ganglionic eminence derived interneuron CGE interneuron HGNC:16941, HGNC:2731 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023064 caudal ganglionic eminence derived interneuron CGE interneuron HGNC:10640, HGNC:26256, HGNC:7843 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023068 thalamic excitatory neuron thalamic excitatory neuron HGNC:32696 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023068 thalamic excitatory neuron thalamic excitatory neuron HGNC:11773, HGNC:18864, HGNC:23317, HGNC:52483 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023068 thalamic excitatory neuron thalamic excitatory neuron HGNC:3490, HGNC:7679 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023068 thalamic excitatory neuron thalamic excitatory neuron HGNC:1513, HGNC:3180, HGNC:8038 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023068 thalamic excitatory neuron thalamic excitatory neuron HGNC:14605, HGNC:1513 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023068 thalamic excitatory neuron thalamic excitatory neuron HGNC:1513, HGNC:16961 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023068 thalamic excitatory neuron thalamic excitatory neuron HGNC:1073, HGNC:11641, HGNC:23317, HGNC:53212 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:4023068 thalamic excitatory neuron thalamic excitatory neuron HGNC:24323, HGNC:9163, HGNC:9997 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023068 thalamic excitatory neuron thalamic excitatory neuron HGNC:21591 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023068 thalamic excitatory neuron thalamic excitatory neuron HGNC:3969, HGNC:49471 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023068 thalamic excitatory neuron thalamic excitatory neuron HGNC:28274, HGNC:49024 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023068 thalamic excitatory neuron thalamic excitatory neuron HGNC:50526, HGNC:8038, HGNC:9997 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023068 thalamic excitatory neuron thalamic excitatory neuron HGNC:17797, HGNC:18864 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023068 thalamic excitatory neuron thalamic excitatory neuron HGNC:18374, HGNC:6173, HGNC:9704 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:4023068 thalamic excitatory neuron thalamic excitatory neuron HGNC:11641, HGNC:18404, HGNC:25552, HGNC:9609 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023068 thalamic excitatory neuron thalamic excitatory neuron HGNC:23503, HGNC:25552, HGNC:26076 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023068 thalamic excitatory neuron thalamic excitatory neuron HGNC:13826, HGNC:49796 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:13635 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:19194, HGNC:3498, HGNC:74 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:17995, HGNC:3498 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:5993, HGNC:9361 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:3498, HGNC:7060 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:130, HGNC:3498 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:30400, HGNC:4871 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:26213, HGNC:29836 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:10937, HGNC:42872 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:11045, HGNC:11046, HGNC:14872 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:11553, HGNC:130 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:4023073 choroid plexus cell choroid plexus cell HGNC:14344, HGNC:5147 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:4023073 choroid plexus cell choroid plexus cell HGNC:12405, HGNC:4462 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:4023073 choroid plexus cell choroid plexus cell HGNC:18695, HGNC:43906, HGNC:9086 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:4023073 choroid plexus cell choroid plexus cell HGNC:3791, HGNC:8824 DOI:10.1101/2022.10.12.511898 +UBERON:0002743 basal forebrain basal forebrain CL:4023073 choroid plexus cell choroid plexus cell HGNC:356, HGNC:9211 DOI:10.1101/2022.10.12.511898 +UBERON:0002743 basal forebrain basal forebrain CL:4023073 choroid plexus cell choroid plexus cell HGNC:5196 DOI:10.1101/2022.10.12.511898 +UBERON:0002743 basal forebrain basal forebrain CL:4023073 choroid plexus cell choroid plexus cell HGNC:18083, HGNC:34, HGNC:9211 DOI:10.1101/2022.10.12.511898 +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:21591, HGNC:42742 DOI:10.1101/2022.10.12.511898 +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:3969, HGNC:42742 DOI:10.1101/2022.10.12.511898 +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:11517, HGNC:39988, HGNC:42742 DOI:10.1101/2022.10.12.511898 +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:11517 DOI:10.1101/2022.10.12.511898 +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:28554, HGNC:42742 DOI:10.1101/2022.10.12.511898 +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:10882, HGNC:2356, HGNC:9005 DOI:10.1101/2022.10.12.511898 +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:10882, HGNC:13604, HGNC:53062, HGNC:9446 DOI:10.1101/2022.10.12.511898 +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:10882, HGNC:28572, HGNC:7596, HGNC:8139 DOI:10.1101/2022.10.12.511898 +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:10725, HGNC:9005 DOI:10.1101/2022.10.12.511898 +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:23319, HGNC:9005 DOI:10.1101/2022.10.12.511898 +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:10882, HGNC:1663, HGNC:6714 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:25723, HGNC:43906, HGNC:53587, HGNC:7941 DOI:10.1101/2022.10.12.511898 +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:1514, HGNC:21641, HGNC:23631 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:15576, HGNC:30506, HGNC:37078 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:15576, HGNC:43906, HGNC:52895 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:23631, HGNC:7941 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:10259, HGNC:1077, HGNC:43906 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:1077, HGNC:19194, HGNC:43906 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:20754, HGNC:23631, HGNC:44222, HGNC:6714 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:22128, HGNC:31110, HGNC:7941 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:14866, HGNC:43906, HGNC:9477, HGNC:9957 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:10725, HGNC:11510, HGNC:30506, HGNC:43906, HGNC:53587 DOI:10.1101/2022.10.12.511898 +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:10725, HGNC:43906, HGNC:52895, HGNC:9477 DOI:10.1101/2022.10.12.511898 diff --git a/logs/ct_loc_markers/Eye_report.tsv b/logs/ct_loc_markers/Eye_report.tsv new file mode 100644 index 000000000..ed2d71d17 --- /dev/null +++ b/logs/ct_loc_markers/Eye_report.tsv @@ -0,0 +1,40 @@ +Terminal AS/ID Terminal AS/label Terminal AS/user_label Terminal CT/ID Terminal CT/label Terminal CT/user_label Markers References +UBERON:0002506 iris epithelium iris epithelium CL:0000066 epithelial cell epithelial cell HGNC:633, HGNC:637, HGNC:800 DOI:10.3390/cell7110210 +UBERON:0000966 retina retina CL:0000129 microglial cell microglial cell HGNC:352 +UBERON:0001985 corneal endothelium corneal endothelium CL:0000132 corneal endothelial cell corneal endothelial cell HGNC:1759 DOI:10.1038/srep29047 +UBERON:0001791 inner nuclear layer of retina inner nuclear layer CL:0000561 Amacrine Cell Amacrine Cell HGNC:11056, HGNC:11742, HGNC:11743, HGNC:11744, HGNC:1434, HGNC:16941, HGNC:24181, HGNC:24182, HGNC:4092, HGNC:4092, HGNC:4093 DOI:10.1016/j.cell.2019.01.004|DOI:10.1016/j.preteyeres.2020.100844|DOI:10.1002/cne.23821 +UBERON:0001789 outer nuclear layer of retina outer nuclear layer CL:0000573 retinal cone cell retinal cone cell HGNC:1012, HGNC:1012, HGNC:4206, HGNC:4206, HGNC:4394, HGNC:4400, HGNC:4412, HGNC:4678, HGNC:710, HGNC:710, HGNC:8759, HGNC:8790, HGNC:9936, HGNC:9936, HGNC:9937 DOI:10.1016/j.ophtha.2017.09.016|DOI:10.1016/j.exer.2016.01.002 +UBERON:0001772 corneal epithelium corneal epithelium CL:0000575 corneal epithelial cell corneal epithelial cell HGNC:1748, HGNC:6414, HGNC:6440, HGNC:7756 DOI:10.1634/stemcell.22-3-355 +UBERON:0001789 outer nuclear layer of retina outer nuclear layer CL:0000604 retinal rod cell retinal rod cell HGNC:10012, HGNC:10012, HGNC:10521, HGNC:4393, HGNC:4411, HGNC:7974, HGNC:8002, HGNC:8759 DOI:10.1016/j.cell.2019.01.004|DOI:10.1016/j.exer.2016.01.002 +UBERON:0001791 inner nuclear layer of retina inner nuclear layer CL:0000636 Mueller cell Muller glia HGNC:10024, HGNC:10024, HGNC:10024, HGNC:10941, HGNC:2095, HGNC:2338, HGNC:2418, HGNC:2893, HGNC:4235, HGNC:4341, HGNC:613 NoDOI|DOI:10.1016/j.ophtha.2017.09.016 +UBERON:0004864 vasculature of retina vasculature CL:0000669 pericyte Pericyte HGNC:15754, HGNC:2202, HGNC:6269, HGNC:7060 DOI:10.1016/j.cell.2019.01.004 +UBERON:0001792 ganglionic layer of retina retinal ganglion cell layer CL:0000740 retinal ganglion cell Ganglion cell HGNC:11141, HGNC:11801, HGNC:11801, HGNC:14449, HGNC:16703, HGNC:19097, HGNC:19097, HGNC:20778, HGNC:7734, HGNC:7739, HGNC:9218, HGNC:9219, HGNC:9220 DOI:10.1017/S0952523819000087|DOI:10.1016/j.cell.2019.01.004 +UBERON:0001791 inner nuclear layer of retina inner nuclear layer CL:0000745 retina horizontal cell Horizontal Cell HGNC:1434, HGNC:1434, HGNC:6593, HGNC:8138, HGNC:8139, HGNC:9704 DOI:10.1016/j.preteyeres.2020.100844|DOI:10.1016/j.exer.2016.01.002 +UBERON:0001791 inner nuclear layer of retina inner nuclear layer CL:0000748 retinal bipolar neuron Bipolar Cell HGNC:12723, HGNC:13714, HGNC:1975, HGNC:1975, HGNC:4389, HGNC:4579, HGNC:4598, HGNC:6132, HGNC:7103, HGNC:7146, HGNC:8522, HGNC:9393, HGNC:9937 DOI:10.1016/j.cell.2019.01.004|DOI:10.1016/j.brainres.2007.06.007|DOI:10.1016/j.exer.2016.01.002 +UBERON:0001791 inner nuclear layer of retina inner nuclear layer CL:0000749 ON-bipolar cell ON Bipolar cell HGNC:4400 DOI:10.1016/j.ophtha.2017.09.016 +UBERON:0001791 inner nuclear layer of retina inner nuclear layer CL:0000751 rod bipolar cell rod bipolar cell HGNC:9393 DOI:10.1002/cne.10491 +UBERON:0001803 epithelium of lens epithelial layer CL:0002224 lens epithelial cell lens epithelial cell HGNC:1748 +UBERON:0000390 lens nucleus Fetal nucleus CL:0002225 secondary lens fiber mature fiber cell HGNC:17494 +UBERON:0002444 lens fiber lens Fibers CL:0002228 primary lens fiber primary lens fiber HGNC:1041 +UBERON:0001778 ciliary epithelium ciliary epithelium CL:0002303 pigmented ciliary epithelial cell pigmented ciliary epithelial cell HGNC:799 DOI:10.3390/cell7110210 +UBERON:0001778 ciliary epithelium ciliary epithelium CL:0002304 non-pigmented ciliary epithelial cell non-pigmented ciliary epithelial cell HGNC:633, HGNC:637, HGNC:800 DOI:10.3390/cell7110210 +UBERON:0003952 anterior stroma of cornea anterior stroma of cornea CL:0002363 keratocyte keratocyte HGNC:8803 DOI:10.1111/jcmm.13270 +UBERON:0002506 iris epithelium iris epithelium CL:0002565 iris pigment epithelial cell iris pigment epithelial cell HGNC:799 DOI:10.3390/cell7110210 +UBERON:0004864 vasculature of retina vasculature CL:0002585 retinal blood vessel endothelial cell Endothelial Cell HGNC:2047, HGNC:2202, HGNC:5476 +UBERON:0001782 pigmented layer of retina retinal pigmented epithelium CL:0002586 retinal pigment epithelial cell retinal pigmented epithelial cell HGNC:10024, HGNC:10294, HGNC:12691 DOI:10.1016/j.ophtha.2017.09.016|DOI:10.1083/jcb.147.7.1533 +UBERON:0001791 inner nuclear layer of retina inner nuclear layer CL:0004219 A2 amacrine cell A2 cell HGNC:1435 DOI:10.1016/j.preteyeres.2020.100844 +UBERON:0001791 inner nuclear layer of retina inner nuclear layer CL:0004232 starburst amacrine cell starburst amacrine cell HGNC:1912 DOI:10.1016/j.preteyeres.2020.100844 +UBERON:0001791 inner nuclear layer of retina inner nuclear layer CL:0004253 wide field retinal amacrine cell wide field cell HGNC:10575, HGNC:12693, HGNC:787, HGNC:9723 DOI:10.1016/j.preteyeres.2020.100844 +UBERON:0002444 lens Fiber lens Fiber CL:0011004 lens fiber cell lens fiber cell HGNC:12692 DOI:10.1167/iovs.15-18117 +UBERON:0002444 lens fiber lens Fibers CL:0011004 lens fiber cell lens fiber cell HGNC:7103 +UBERON:0001791 inner nuclear layer of retina inner nuclear layer CL:0011005 GABAergic interneuron GABAergic interneuron HGNC:10575, HGNC:11329, HGNC:11526, HGNC:11528, HGNC:11782, HGNC:12693, HGNC:16941, HGNC:1912, HGNC:24323, HGNC:4093, HGNC:7955, HGNC:9726 DOI:10.1016/j.preteyeres.2020.100844|DOI:10.1002/(SICI)1096-9861(19990816)411:1<19::AID-CNE3>3.0.CO;2-4|DOI:10.1002/cne.902760106 +UBERON:0003952 anterior stroma of cornea anterior stroma of cornea CL:0017004 telocyte telocyte HGNC:8803 DOI:10.1111/jcmm.13270 +UBERON:0001791 inner nuclear layer of retina inner nuclear layer CL:4030028 glycinergic amacrine cell Glycinergic Amacrine Cell HGNC:11510, HGNC:1435, HGNC:19087, HGNC:20151, HGNC:21637, HGNC:9704, HGNC:9723 DOI:10.1002/cne.10985|DOI:10.1016/j.preteyeres.2020.100844|DOI:10.1523/JNEUROSCI.0907-11.2011|DOI:10.1017/S0952523809090075|DOI:10.1002/cne.21666 +UBERON:0001791 inner nuclear layer of retina inner nuclear layer CL:4033019 ON-blue cone bipolar cell blue cone bipolar cell HGNC:1569 DOI:10.1016/j.preteyeres.2020.100844 +UBERON:0001791 inner nuclear layer of retina inner nuclear layer CL:4033027 diffuse bipolar 1 cell Diffuse bipolar 1 (DB1) HGNC:16941 DOI:10.1002/cne.22756 +UBERON:0001791 inner nuclear layer of retina inner nuclear layer CL:4033028 diffuse bipolar 2 cell Diffuse bipolar 2 cell HGNC:10940 DOI:10.1002/cne.903480410|DOI:10.1002/(SICI)1096-9861(20000103)416:1<19::AID-CNE3>3.0.CO;2-H|DOI:10.1002/cne.10491 +UBERON:0001791 inner nuclear layer of retina inner nuclear layer CL:4033029 diffuse bipolar 3a cell Diffuse bipolar 3a cell HGNC:10585, HGNC:1384, HGNC:1434, HGNC:4845 DOI:10.1016/j.preteyeres.2020.100844|DOI:10.1002/cne.10491|DOI:10.1523/JNEUROSCI.1249-13.2013 +UBERON:0001791 inner nuclear layer of retina inner nuclear layer CL:4033030 diffuse bipolar 3b cell Diffuse bipolar 3b cell HGNC:1394, HGNC:4845 DOI:10.1017/s0952523800011391 +UBERON:0001791 inner nuclear layer of retina inner nuclear layer CL:4033031 diffuse bipolar 4 cell Diffuse bipolar 4 cell HGNC:10585, HGNC:1394, HGNC:4845, HGNC:9393, HGNC:9393 DOI:10.1002/cne.22756 +UBERON:0001791 inner nuclear layer of retina inner nuclear layer CL:4033033 flat midget bipolar cell Flat midget bipolar cell HGNC:26483, HGNC:9937 DOI:10.1016/j.preteyeres.2020.100844|DOI:10.1002/cne.10491|NoDOI +UBERON:0001791 inner nuclear layer of retina inner nuclear layer CL:4033034 invaginating midget bipolar cell invaginating bipolar cell HGNC:1569 DOI:10.1002/cne.22756 diff --git a/logs/ct_loc_markers/Heart_report.tsv b/logs/ct_loc_markers/Heart_report.tsv new file mode 100644 index 000000000..d6975e853 --- /dev/null +++ b/logs/ct_loc_markers/Heart_report.tsv @@ -0,0 +1,60 @@ +Terminal AS/ID Terminal AS/label Terminal AS/user_label Terminal CT/ID Terminal CT/label Terminal CT/user_label Markers References +UBERON:0001625 right coronary artery right coronary artery CL:0000057 fibroblast fibroblast HGNC:2705, HGNC:4620, HGNC:8803 +UBERON:0002348 epicardium Epicardium CL:0000057 fibroblast fibroblast HGNC:2705, HGNC:4620, HGNC:8803 +UBERON:0002049 vasculature vasculature CL:0000057 fibroblast fibroblast HGNC:2705, HGNC:4620, HGNC:8803 +UBERON:0005438 coronary sinus coronary sinus CL:0000057 fibroblast fibroblast HGNC:2705, HGNC:4620, HGNC:8803 +UBERON:0009687 middle cardiac vein middle cardiac vein CL:0000057 fibroblast fibroblast HGNC:2705, HGNC:8803 +UBERON:0006958 great cardiac vein great cardiac vein CL:0000057 fibroblast fibroblast HGNC:2705, HGNC:4620, HGNC:8803 +UBERON:0035374 small cardiac vein small cardiac vein CL:0000057 fibroblast fibroblast HGNC:2705, HGNC:4620, HGNC:8803 +UBERON:0002094 interventricular septum septum CL:0000057 fibroblast fibroblast HGNC:2705, HGNC:4620, HGNC:8803 +UBERON:0035422 circumflex branch of left coronary artery left circumflex artery CL:0000057 fibroblast fibroblast HGNC:2705, HGNC:4620, HGNC:8803 +UBERON:0002049 vasculature vasculature CL:0000071 blood vessel endothelial cell endothelial cell HGNC:12726, HGNC:1764, HGNC:8823 +UBERON:0002348 epicardium Epicardium CL:0000071 blood vessel endothelial cell endothelial cell HGNC:12726, HGNC:1764, HGNC:8823 +UBERON:0002094 interventricular septum septum CL:0000071 blood vessel endothelial cell smooth muscle cell HGNC:11553, HGNC:130, HGNC:7569 +UBERON:0006958 great cardiac vein great cardiac vein CL:0000071 blood vessel endothelial cell smooth muscle cell HGNC:11553, HGNC:130, HGNC:7569 +UBERON:0002137 Aortic valve Aortic valve CL:0000071 blood vessel endothelial cell endothelial cell HGNC:12726, HGNC:1764, HGNC:8823 +UBERON:0009687 middle cardiac vein middle cardiac vein CL:0000071 blood vessel endothelial cell smooth muscle cell HGNC:11553, HGNC:130, HGNC:7569 +UBERON:0002348 epicardium Epicardium CL:0000077 mesothelial cell mesothelial cell HGNC:11027, HGNC:11029, HGNC:12796, HGNC:1455 +UBERON:0006566 left ventricle myocardium myocardium CL:0000136 fat cell adipocyte HGNC:24865, HGNC:3594, HGNC:6553 +UBERON:0002352 atrioventricular node atrioventricular node CL:0000136 fat cell adipocyte HGNC:24865, HGNC:3594, HGNC:6553 +UBERON:0006567 right ventricle myocardium myocardium CL:0000235 macrophage macrophage HGNC:1241, HGNC:1628, HGNC:3793, HGNC:3793 +UBERON:0006566 left ventricle myocardium myocardium CL:0000235 macrophage macrophage HGNC:1241, HGNC:1628, HGNC:3793, HGNC:3793 +UBERON:0002348 epicardium Epicardium CL:0000235 macrophage macrophage HGNC:1241, HGNC:1628, HGNC:3793 +UBERON:0003379 cardiac muscle of right atrium myocardium CL:0000235 macrophage macrophage HGNC:1241, HGNC:1628, HGNC:3793, HGNC:3793 +UBERON:0005438 coronary sinus coronary sinus CL:0000359 vascular associated smooth muscle cell smooth muscle cell HGNC:11553, HGNC:130, HGNC:7569 +UBERON:0002049 vasculature vasculature CL:0000359 vascular associated smooth muscle cell smooth muscle cell HGNC:11553, HGNC:130, HGNC:7569 +UBERON:0002348 epicardium Epicardium CL:0000359 vascular associated smooth muscle cell smooth muscle cell HGNC:11553, HGNC:130, HGNC:7569 +UBERON:0001982 capillary vasculature CL:0000669 pericyte pericyte HGNC:10001, HGNC:60, HGNC:6269 +UBERON:0001979 venule vasculature CL:0000669 pericyte pericyte HGNC:10001, HGNC:60, HGNC:6269 +UBERON:0002078 right cardiac atrium right atrium CL:0000669 pericyte pericyte HGNC:10001, HGNC:60, HGNC:6269 +UBERON:0006566 left ventricle myocardium myocardium CL:0000746 cardiac muscle cell cardiomyocyte HGNC:12403, HGNC:3703, HGNC:7576, HGNC:7583 +UBERON:0006567 right ventricle myocardium myocardium CL:0000746 cardiac muscle cell cardiomyocyte HGNC:12403, HGNC:3703, HGNC:7576, HGNC:7583 +UBERON:0003379 cardiac muscle of right atrium myocardium CL:0000746 cardiac muscle cell cardiomyocyte HGNC:12403, HGNC:7576, HGNC:7939 +UBERON:0006566 left ventricle myocardium myocardium CL:0001056 dendritic cell, human dendritic cell HGNC:6147, HGNC:6149, HGNC:6152, HGNC:6729 +UBERON:0001982 capillary vasculature CL:0002144 capillary endothelial cell capillary endothelial cell HGNC:10001, HGNC:60, HGNC:6269 +UBERON:0002135 Mitral valve Mitral valve CL:0002350 endocardial cell endocardial HGNC:12726, HGNC:1764, HGNC:8823 +UBERON:0002146 Pulmonary Valve Pulmonary Valve CL:0002350 endocardial cell endocardial HGNC:12726, HGNC:1764, HGNC:8823 +UBERON:0002134 Tricuspid valve Tricuspid valve CL:0002350 endocardial cell endocardial HGNC:12726, HGNC:1764, HGNC:8823 +UBERON:0002348 epicardium Epicardium CL:0002573 Schwann cell Schwann Cell HGNC:11190 +UBERON:0003379 cardiac muscle of right atrium myocardium CL:0002573 Schwann cell Schwann Cell HGNC:8008, HGNC:8010, HGNC:9086 +UBERON:0035374 small cardiac vein small cardiac vein CL:0002592 smooth muscle cell of the coronary artery smooth muscle cell HGNC:11553, HGNC:130, HGNC:7569 +UBERON:0001625 right coronary artery right coronary artery CL:0002592 smooth muscle cell of the coronary artery smooth muscle cell HGNC:11553, HGNC:130, HGNC:7569 +UBERON:0035422 circumflex branch of left coronary artery left circumflex artery CL:0002592 smooth muscle cell of the coronary artery smooth muscle cell HGNC:11553, HGNC:130, HGNC:7569 +UBERON:0002049 vasculature vasculature CL:0010008 cardiac endothelial cell endothelial cell HGNC:12726, HGNC:1764, HGNC:8823 +UBERON:0006566 left ventricle myocardium myocardium CL:0017004 telocyte telocyte (interstitial like cell of cajal) HGNC:12692, HGNC:1662 +UBERON:0002348 epicardium Epicardium CL:1000309 epicardial adipocyte adipocyte HGNC:24865, HGNC:3594, HGNC:6553 +UBERON:0035374 small cardiac vein small cardiac vein CL:1000413 endothelial cell of artery endothelial cell HGNC:12726, HGNC:1764, HGNC:8823 +UBERON:0001625 right coronary artery right coronary artery CL:1000413 endothelial cell of artery endothelial cell HGNC:12726, HGNC:1764, HGNC:8823 +UBERON:0035422 circumflex branch of left coronary artery left circumflex artery CL:1000413 endothelial cell of artery endothelial cell HGNC:12726, HGNC:1764, HGNC:8823 +UBERON:0002094 interventricular septum septum CL:1000413 endothelial cell of artery endothelial cell HGNC:12726, HGNC:1764, HGNC:8823 +UBERON:0006958 great cardiac vein great cardiac vein CL:1000413 endothelial cell of artery endothelial cell HGNC:12726, HGNC:1764, HGNC:8823 +UBERON:0009687 middle cardiac vein middle cardiac vein CL:1000413 endothelial cell of artery endothelial cell HGNC:12726, HGNC:1764, HGNC:8823 +UBERON:0005438 coronary sinus coronary sinus CL:1000413 endothelial cell of artery endothelial cell HGNC:12726, HGNC:1764, HGNC:8823 +UBERON:0002353 atrioventricular bundle bundle of His CL:1000477 cardiac pacemaker cell of sinoatrial node pacemaker cardiomyocyte HGNC:16882, HGNC:4280 +UBERON:0002352 atrioventricular node atrioventricular node CL:1000477 cardiac pacemaker cell of sinoatrial node pacemaker cell HGNC:16882, HGNC:4280 +UBERON:0002351 sinoatrial node sinoatrial node CL:1000477 cardiac pacemaker cell of sinoatrial node pacemaker cell HGNC:16882, HGNC:4280 +UBERON:0006567 right ventricle myocardium myocardium CL:2000066 cardiac ventricle fibroblast fibroblast HGNC:2705, HGNC:4620, HGNC:8803 +UBERON:0002049 vasculature vasculature CL:2000066 cardiac ventricle fibroblast fibroblast HGNC:4620, HGNC:8803 +UBERON:0006566 left ventricle myocardium myocardium CL:2000066 cardiac ventricle fibroblast fibroblast HGNC:2705, HGNC:4620, HGNC:8803 +UBERON:0003379 cardiac muscle of right atrium myocardium CL:2000067 cardiac atrium fibroblast fibroblast HGNC:2705, HGNC:4620, HGNC:8803 +UBERON:0002049 vasculature vasculature CL:2000067 cardiac atrium fibroblast fibroblast HGNC:2705, HGNC:4620, HGNC:8803 diff --git a/logs/ct_loc_markers/Kidney_report.tsv b/logs/ct_loc_markers/Kidney_report.tsv new file mode 100644 index 000000000..094d6d1c6 --- /dev/null +++ b/logs/ct_loc_markers/Kidney_report.tsv @@ -0,0 +1,75 @@ +Terminal AS/ID Terminal AS/label Terminal AS/user_label Terminal CT/ID Terminal CT/label Terminal CT/user_label Markers References +UBERON:0005215 kidney interstitium Interstitium CL:0000084 T cell T Cell HGNC:11935, HGNC:1673, HGNC:1675, HGNC:1677, HGNC:16892 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41586-020-2941-1|DOI:10.1172/jci.insight.133267|DOI:10.1126/science.aat5031|PMID:31249312|PMCID:PMC6597610 +UBERON:0005215 kidney interstitium Interstitium CL:0000097 mast cell Mast cell HGNC:2298, HGNC:6342, HGNC:7316 DOI:10.1101/2021.07.28.454201|DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41586-020-2941-1|DOI:10.1172/jci.insight.133267 +UBERON:0001986 endothelium Endothelium (non glomerular) CL:0000115 endothelial cell Endothelial Cell HGNC:16041, HGNC:3763, HGNC:8823, HGNC:8823 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|PMID:31249312|PMCID:PMC6597610 +UBERON:0005215 kidney interstitium Interstitium CL:0000236 B cell B cell HGNC:1698, HGNC:4947, HGNC:5713, HGNC:7315 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41586-020-2941-1|DOI:10.1172/jci.insight.133267|DOI:10.1126/science.aat5031|PMID:31249312|PMCID:PMC6597610 +UBERON:0005215 kidney interstitium Interstitium CL:0000576 monocyte Monocyte HGNC:1241, HGNC:4947, HGNC:6152 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41586-020-2941-1|DOI:10.1126/science.aat5031|PMID:31249312|PMCID:PMC6597610 +UBERON:0005215 kidney interstitium Interstitium CL:0000623 natural killer cell Natural Killer Cell HGNC:10473, HGNC:4414, HGNC:4708, HGNC:7830 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41586-020-2941-1|DOI:10.1172/jci.insight.133267|DOI:10.1126/science.aat5031|PMID:31249312|PMCID:PMC6597610 +UBERON:0002303 juxtaglomerular apparatus Juxtaglomerular Apparatus CL:0000648 kidney granular cell Juxtaglomerular granular cell (Renin positive) HGNC:9958 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1073/pnas.2005477117|PMID:31249312|PMCID:PMC6597610 +UBERON:0005751 glomerular visceral epithelium visceral epithelial layer CL:0000653 podocyte Podocyte HGNC:13394, HGNC:13517, HGNC:23319, HGNC:7908, HGNC:9171, HGNC:9171, HGNC:9679 DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41586-020-2941-1|DOI:10.1073/pnas.2005477117|PMID:31249312|PMCID:PMC6597610 +UBERON:0005751 glomerular visceral epithelium visceral epithelial layer CL:0000653 podocyte Podocyte HGNC:13394, HGNC:7908, HGNC:9171, HGNC:9679 +UBERON:0005751 glomerular visceral epithelium visceral epithelial layer CL:0000653 glomerular visceral epithelial cell Podocyte HGNC:13394, HGNC:7908, HGNC:9171, HGNC:9171, HGNC:9679 +UBERON:0005215 kidney interstitium Interstitium CL:0000738 Leukocyte Leukocyte HGNC:9666 +UBERON:0005215 kidney interstitium Interstitium CL:0000775 neutrophil Neutrophil HGNC:10498, HGNC:10499, HGNC:2439, HGNC:3620 DOI:10.1101/2021.07.28.454201|DOI:10.1016/j.exphem.2016.10.008|DOI:10.1038/s41586-020-2941-1|DOI:10.1172/jci.insight.133267|DOI:10.1126/science.aat5031 +UBERON:0005215 kidney interstitium Interstitium CL:0000786 plasma cell Plasma cell HGNC:18508, HGNC:30125, HGNC:5713, HGNC:5716 DOI:10.1101/2021.07.28.454201|DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41586-020-2941-1|DOI:10.1172/jci.insight.133267|DOI:10.1126/science.aat5031 +UBERON:0005215 kidney interstitium Interstitium CL:0000814 mature NK T cell Natural Killer T Cell HGNC:10473, HGNC:1675, HGNC:1677, HGNC:16892, HGNC:4414, HGNC:4708, HGNC:7830 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41586-020-2941-1|DOI:10.1172/jci.insight.133267||PMID:31249312|PMCID:PMC6597610 +UBERON:0005215 kidney interstitium Interstitium CL:0000815 regulatory T cell regulatory T cell HGNC:6106 +UBERON:0005215 kidney interstitium Interstitium CL:0000875 non-classical monocyte non Classical Monocyte HGNC:3619, HGNC:4947 DOI:10.1101/2021.07.28.454201|DOI:10.3389/fimmu.2019.02035|DOI:10.1126/science.aat5031|DOI:10.1172/jci.insight.133267|DOI:10.1126/science.aat5031 +UBERON:0005215 kidney interstitium Interstitium CL:0000910 cytotoxic T cell Cytotoxic T Cell HGNC:10630, HGNC:10632, HGNC:4708 DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|PMID:31249312|PMCID:PMC6597610 +UBERON:0005215 kidney interstitium Interstitium CL:0000990 conventional dendritic cell Dendritic Cell (classical) HGNC:26705, HGNC:3765, HGNC:6152 DOI:10.1101/2021.07.28.454201|DOI:10.1084/jem.20030323|DOI:10.1126/science.aat5031 +UBERON:0005215 kidney interstitium Interstitium CL:0001056 dendritic cell, human Dendritic Cell (general) HGNC:1636, HGNC:1638, HGNC:3609, HGNC:4947, HGNC:613 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41586-020-2941-1|DOI:10.1126/science.aat5031|PMID:31249312|PMCID:PMC6597610 +UBERON:0005215 kidney interstitium Interstitium CL:0001058 plasmacytoid dendritic cell, human Dendritic Cell (plasmatoid) HGNC:3765, HGNC:6012 DOI:10.1101/2021.07.28.454201|DOI:10.1038/s41467-019-10861-2 +UBERON:0002042 lymphatic vessel endothelium Endothelium (non glomerular) CL:0002138 endothelial cell of lymphatic vessel Lymphatic Endothelial Cell HGNC:11592, HGNC:7178, HGNC:8823, HGNC:9459 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|DOI:10.1038/s41586-020-2941-1|DOI:10.1038/s41467-019-12872-5|PMID:31249312|PMCID:PMC6597610 +UBERON:0001232 collecting duct of renal tubule Collecting Duct CL:0002201 renal beta-intercalated cell Intercalated Cell Type B HGNC:11035, HGNC:8031, HGNC:8818 DOI:10.1038/s41467-019-10861-2|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|DOI:10.1126/science.aat1699|PMID:31249312|PMCID:PMC6597610|PMID:31689386 +UBERON:0004134 proximal tubule proximal tubule CL:0002306 epithelial cell of proximal tubule Proximal Tubule Epithelial Cell HGNC:10916, HGNC:2548, HGNC:417, HGNC:4175, HGNC:6694, HGNC:6694 DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|DOI:10.1038/s41586-020-2941-1|DOI:10.1073/pnas.2005477117|DOI:10.1681/ASN.2020010071|PMID:31249312|PMCID:PMC6597610 +UBERON:0003517 kidney blood vessel Kidney Blood Vessel CL:0019018 blood vessel smooth muscle cell Vascular Smooth Muscle Cell HGNC:10002, HGNC:12692, HGNC:130, HGNC:15710, HGNC:277, HGNC:6934, HGNC:7569, HGNC:8033 +UBERON:0005750 glomerular parietal epithelium parietal epithelial layer CL:1000452 parietal epithelial cell Parietal Epithelial Cell HGNC:12663, HGNC:12692, HGNC:15472, HGNC:18688, HGNC:4883 DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|DOI:10.1038/s41467-019-10861-2|PMID:31249312|PMCID:PMC6597610 +UBERON:0001232 collecting duct of renal tubule Collecting Duct CL:1000454 kidney collecting duct epithelial cell Collecting Duct Cell HGNC:1748, HGNC:1748, HGNC:4172, HGNC:6446 DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|DOI:10.1681/ASN.2020010071|PMID:31249312|PMCID:PMC6597610|PMID:32358040 +UBERON:0009095 tip of renal papilla Papillary Tip CL:1000597 papillary tips cell Papillary Tip Epithelial Cell HGNC:11530, HGNC:15979, HGNC:4554, HGNC:6442 +UBERON:0005215 kidney interstitium Interstitium CL:1000691 kidney interstitial myofibroblast Myofibroblast HGNC:11553, HGNC:130, HGNC:20391, HGNC:2193, HGNC:2197, HGNC:2209 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41586-020-2941-1|PMID:31249312|PMCID:PMC6597610 +UBERON:0005215 kidney interstitium Interstitium CL:1000692 kidney interstitial fibroblast Fibroblast HGNC:12692, HGNC:1346, HGNC:14881, HGNC:2197, HGNC:2198, HGNC:2705, HGNC:6724 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|PMID:31249312|PMCID:PMC6597610 +UBERON:0005215 kidney interstitium Interstitium CL:1000695 kidney interstitial alternatively activated macrophage M2-Macrophage HGNC:1628, HGNC:1631, HGNC:4947, HGNC:6024, HGNC:6152, HGNC:7228 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41586-020-2941-1|DOI:10.1126/science.aat5031|PMID:31249312|PMCID:PMC6597610 +UBERON:0004203 cortical collecting duct Collecting Duct (Cortex) CL:1000714 kidney cortex collecting duct principal cell Cortical Collecting Duct Principal Cell HGNC:634, HGNC:634, HGNC:636 +UBERON:0004203 cortical collecting duct Collecting Duct (Cortex) CL:1000714 kidney cortex collecting duct principal cell Cortical Collecting Duct Principal Cell HGNC:10602, HGNC:4028, HGNC:4172, HGNC:634, HGNC:634, HGNC:636 DOI:10.1038/s41467-019-10861-2|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1172/jci.insight.133267|PMID:31249312|PMCID:PMC6597610|PMID:31689386 +UBERON:0004203 cortical collecting duct Collecting Duct CL:1000715 kidney cortex collecting duct intercalated cell Cortical Collecting Duct Intercalated Cell Type B HGNC:11035, HGNC:8818 DOI:10.1038/s41467-019-10861-2|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|DOI:10.1126/science.aat1699|PMID:31249312|PMCID:PMC6597610|PMID:31689386 +UBERON:0004203 cortical collecting duct Collecting Duct (Cortex) CL:1000715 kidney cortex collecting duct intercalated cell Cortical Collecting Duct Intercalated Cell Type A HGNC:11027, HGNC:14467, HGNC:6342, HGNC:639 DOI:10.1038/s41467-019-10861-2|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|PMID:31249312|PMCID:PMC6597610|PMID:31689386 +UBERON:0004204 outer medullary collecting duct Collecting Duct (Outer Medulla) CL:1000716 kidney outer medulla collecting duct principal cell Outer Medullary Collecting Duct Principal Cell HGNC:10602, HGNC:4028, HGNC:4172, HGNC:634, HGNC:634, HGNC:636 DOI:10.1038/s41467-019-10861-2|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1172/jci.insight.133267|PMID:31249312|PMCID:PMC6597610|PMID:31689386 +UBERON:0004204 renal outer medullary collecting duct Collecting Duct (Medulla) CL:1000717 kidney outer medulla collecting duct intercalated cell Outer Medullary Collecting Duct Intercalated Cell Type A HGNC:11027, HGNC:1437, HGNC:14467, HGNC:6342 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1126/science.aat1699|PMID:31249312|PMCID:PMC6597610 +UBERON:0009095 tip of renal papilla papillary tip CL:1000718 kidney inner medulla collecting duct principal cell Inner Medullary Collecting Duct Cell HGNC:10919, HGNC:634, HGNC:634 +UBERON:0004205 inner medullary collecting duct Collecting Duct (Inner Medulla) CL:1000718 kidney inner medulla collecting duct Inner Medullary Collecting Duct Cell HGNC:10919, HGNC:634, HGNC:634 DOI:10.1038/s41467-019-10861-2|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1101/2021.07.28.454201|DOI:10.1681/ASN.2020010071|PMID:31249312|PMCID:PMC6597610|PMID:31689386 +UBERON:0002320 glomerular mesangium glomerular mesangium CL:1000742 glomerular mesangial cell Mesangial Cell HGNC:10249, HGNC:16953, HGNC:17732, HGNC:26270, HGNC:6144, HGNC:8804 DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41586-020-2941-1|DOI:10.1073/pnas.2005477117|DOI:10.1681/ASN.2020010071|PMID:31249312|PMCID:PMC6597610 +UBERON:0005097 renal connecting tubule Connecting Tubule CL:1000768 kidney connecting tubule epithelial cell Connecting Tubule Cell HGNC:10588, HGNC:10602, HGNC:11068, HGNC:1434, HGNC:1748, HGNC:1748, HGNC:3145, HGNC:4172, HGNC:5209 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1681/ASN.2020010071|DOI:10.1681/ASN.2020010071|PMID:31249312|PMCID:PMC6597610|PMID:32358040 +UBERON:0001292 distal convoluted tubule Distal Convolution CL:1000849 kidney distal convoluted tubule epithelial cell Distal Convoluted Tubule Cell HGNC:10527, HGNC:10912, HGNC:1434, HGNC:1748, HGNC:1748, HGNC:17995, HGNC:799, HGNC:799 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1681/ASN.2020010071|DOI:10.1681/ASN.2020010071|PMID:31249312|PMCID:PMC6597610|PMID:32358040 +UBERON:0002335 macula densa Macula Densa CL:1000850 macula densa epithelial cell Macula Densa cell HGNC:10250, HGNC:10910, HGNC:1748, HGNC:1748, HGNC:7872, HGNC:799, HGNC:799 DOI:10.1038/s41467-019-10861-2|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1681/ASN.2020010071|PMID:31249312|PMCID:PMC6597610|PMID:31689386 +UBERON:0004294 glomerular capillary endothelium glomerular capillary endothelium CL:1001005 glomerular capillary endothelial cell Glomerular Capillary Endothelial Cell HGNC:16041, HGNC:29853, HGNC:3244, HGNC:3763, HGNC:633, HGNC:633, HGNC:9051 DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41586-020-2941-1|DOI:10.1038/s41467-019-12872-5|PMID:31249312|PMCID:PMC6597610 +UBERON:0012441 endothelium of peritubular capillary Endothelium (non glomerular) CL:1001033 peritubular capillary endothelial cell Peritubular Capillary Endothelial Cell HGNC:13635, HGNC:2959, HGNC:8823, HGNC:9845 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267||DOI:10.1038/s41467-019-12872-5|PMID:31249312|PMCID:PMC6597610 +UBERON:0004639 renal afferent arteriole Afferent Arteriole CL:1001096 kidney afferent arteriole endothelial cell Afferent Arteriole Endothelial Cell HGNC:10918, HGNC:11853, HGNC:15846, HGNC:18122, HGNC:222, HGNC:8823, HGNC:8951 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|PMID:31249312|PMCID:PMC6597610 +UBERON:0004640 renal efferent arteriole Efferent Arteriole CL:1001099 kidney efferent arteriole endothelial cell Efferent Arteriole Endothelial cell HGNC:10918, HGNC:11853, HGNC:15846, HGNC:18122, HGNC:222, HGNC:8823, HGNC:8951 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|PMID:31249312|PMCID:PMC6597610 +UBERON:0001291 thick ascending limb of loop of Henle Loop of Henle (Thick Limb) CL:1001106 kidney loop of Henle thick ascending limb epithelial cell Thick Ascending Limb Cell HGNC:10910, HGNC:12559, HGNC:12559, HGNC:1514, HGNC:1748, HGNC:1748, HGNC:799, HGNC:799 DOI:10.1038/s41467-019-10861-2|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|DOI:10.1038/s41586-020-2941-1|DOI:10.1681/ASN.2020010071|PMID:31249312|PMCID:PMC6597610|PMID:31689386 +UBERON:0004193 loop of Henle ascending limb thin segment Loop of Henle (Thin Limb) CL:1001107 kidney loop of Henle thin ascending limb epithelial cell Ascending Thin Limb Cell HGNC:10832, HGNC:11530, HGNC:1748, HGNC:1748, HGNC:2026, HGNC:2045, HGNC:2389, HGNC:9459 DOI:10.1038/s41467-019-10861-2|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1038/s41467-019-10861-2|PMID:31249312|PMCID:PMC6597610|PMID:31689386 +UBERON:0001291 thick ascending limb of loop of Henle Loop of Henle (Thick Limb/Medulla) CL:1001108 kidney loop of Henle medullary thick ascending limb epithelial cell Medullary Thick Ascending Limb Cell HGNC:10910, HGNC:12559, HGNC:12559, HGNC:1514, HGNC:1748, HGNC:1748, HGNC:799, HGNC:799, HGNC:9459, HGNC:9858 DOI:10.1038/s41467-019-10861-2|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|DOI:10.1681/ASN.2020010071|PMID:31249312|PMCID:PMC6597610|PMID:31689386 +UBERON:0001291 thick ascending limb of loop of Henle Loop of Henle (Thick Limb/Medulla) CL:1001108 kidney loop of Henle medullary thick ascending limb epithelial cell Medullary Thick Ascending Limb Cell HGNC:10910, HGNC:12559, HGNC:1514 +UBERON:0001291 thick ascending limb of loop of Henle Loop of Henle (Thick Limb/Cortex) CL:1001109 kidney loop of Henle cortical thick ascending limb epithelial cell Cortical Thick Ascending Limb Cell HGNC:10910, HGNC:12559, HGNC:12559, HGNC:1514, HGNC:1748, HGNC:1748, HGNC:2037, HGNC:33705, HGNC:799, HGNC:799 DOI:10.1038/s41467-019-10861-2|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1038/s41467-019-10861-2|DOI:10.1681/ASN.2020010071|PMID:31249312|PMCID:PMC6597610|PMID:31689386 +UBERON:0005096 descending thin limb descending thin limb of loop of Henle CL:1001111 kidney loop of Henle thin descending limb epithelial cell Descending Thin Limb Cell HGNC:11255, HGNC:11255, HGNC:12663, HGNC:12692, HGNC:1748, HGNC:1748, HGNC:21637, HGNC:2389 DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|DOI:10.1038/s41467-019-10861-2|DOI:10.1681/ASN.2020010071|PMID:31249312|PMCID:PMC6597610 +UBERON:0001986 endothelium Endothelium (non glomerular) CL:1001131 vasa recta ascending limb cell Ascending Vasa Recta Endothelial Cell HGNC:13635, HGNC:2959, HGNC:4460, HGNC:7976, HGNC:8823 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1101/2021.07.28.454201|DOI:10.1038/s41586-020-2941-1|DOI:10.1038/s41467-019-12872-5|PMID:31249312|PMCID:PMC6597610 +UBERON:0001986 endothelium Endothelium (non glomerular) CL:1001285 vasa recta descending limb cell Descending Vasa Recta Endothelial Cell HGNC:10918, HGNC:11853, HGNC:15846, HGNC:222, HGNC:26183, HGNC:8823, HGNC:8951 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1101/2021.07.28.454201|DOI:10.1038/s41467-019-12872-5|PMID:31249312|PMCID:PMC6597610 +UBERON:0009202 vasa recta descending limb Descending Vasa Recta CL:1001285 vasa recta descending limb cell Descending Vasa Recta Endothelial Cell HGNC:11853, HGNC:12559, HGNC:15846, HGNC:222, HGNC:8951 +UBERON:0009202 vasa recta descending limb Descending Vasa Recta CL:1001285 vasa recta descending limb cell Descending Vasa Recta Endothelial Cell HGNC:11853, HGNC:15846, HGNC:222, HGNC:8951 +UBERON:0003517 kidney blood vessel Kidney Blood Vessel CL:1001318 renal interstitial pericyte Vascular Smooth Muscle Cell/Pericyte (general) HGNC:11553, HGNC:130, HGNC:234, HGNC:26295, HGNC:6934, HGNC:7569, HGNC:8033 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|DOI:10.1073/pnas.2005477117|DOI:10.1038/s41586-020-2941-1|PMID:31249312|PMCID:PMC6597610 +UBERON:0001232 collecting duct of renal tubule Collecting Duct CL:1001431 kidney collecting duct principal cell Collecting Duct Principal Cell HGNC:10602, HGNC:4028, HGNC:4172, HGNC:634, HGNC:634, HGNC:636 DOI:10.1038/s41467-019-10861-2|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1172/jci.insight.133267|DOI:10.1038/s41586-020-2941-1|PMID:31249312|PMCID:PMC6597610|PMID:31689386 +UBERON:0001232 collecting duct of renal tubule Collecting Duct CL:1001432 kidney collecting duct intercalated cell Collecting Duct Intercalated Cell HGNC:1373, HGNC:18266 DOI:10.1038/s41467-019-10861-2|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1172/jci.insight.133267|DOI:10.1038/s41586-020-2941-1|PMID:31249312|PMCID:PMC6597610|PMID:31689386 +UBERON:0004196 proximal convoluted tubule segment 1 proximal convoluted tubule segment 1 CL:4030009 epithelial cell of proximal tubule segment 1 Proximal Tubule Epithelial Cell Segment 1 HGNC:10970, HGNC:10972, HGNC:11019, HGNC:11037, HGNC:28750, HGNC:9453 DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1038/s41586-020-2941-1|DOI:10.1073/pnas.2005477117|DOI:10.1681/ASN.2020010071|PMID:31249312|PMCID:PMC6597610|PMID:31689386 +UBERON:0004197 proximal convoluted tubule segment 2 proximal convoluted tubule segment 2 CL:4030010 epithelial cell of proximal tubule segment 2 Proximal Tubule Epithelial Cell Segment 2 HGNC:10970, HGNC:10972, HGNC:11019, HGNC:14430, HGNC:23091, HGNC:32017 DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1073/pnas.2005477117|DOI:10.1681/ASN.2020010071|PMID:31249312|PMCID:PMC6597610|PMID:31689386 +UBERON:0001290 proximal straight tubule proximal straight tubule segment 3 CL:4030011 epithelial cell of proximal tubule segment 3 Proximal Tubule Cell Epithelial Segment 3 HGNC:10929, HGNC:10971, HGNC:18210, HGNC:21637, HGNC:23091, HGNC:633, HGNC:633 DOI:10.1038/s41467-019-10861-2|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1038/s41586-020-2941-1|DOI:10.1073/pnas.2005477117|DOI:10.1681/ASN.2020010071|PMID:31249312|PMCID:PMC6597610|PMID:31689386 +UBERON:0001289 descending limb of loop of Henle Loop of Henle (Thin Limb) CL:4030012 kidney loop of Henle short descending thin limb epithelial cell Descending Thin Limb Cell Type 1 HGNC:10919, HGNC:11255, HGNC:11530, HGNC:21637, HGNC:2303, HGNC:2389, HGNC:5360, HGNC:6188 DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|DOI:10.1152/ajprenal.2000.278.1.F52|DOI:10.1681/ASN.2020010071|PMID:31249312|PMCID:PMC6597610 +UBERON:0001289 descending limb of loop of Henle Loop of Henle (Thin Limb) CL:4030013 kidney loop of Henle long descending thin limb outer medulla epithelial cell Descending Thin Limb Cell Type 2 HGNC:11073, HGNC:11530, HGNC:16438, HGNC:20862, HGNC:2389, HGNC:633, HGNC:633 DOI:10.1101/2021.07.28.454201|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1038/s41467-019-10861-2|DOI:10.1681/ASN.2020010071|DOI:10.1152/ajprenal.2000.278.1.F52|PMID:31689386 +UBERON:0001289 descending limb of loop of Henle Loop of Henle (Thin Limb) CL:4030013 kidney loop of Henle long descending thin limb outer medulla epithelial cell Descending Thin Limb Cell Type 2 HGNC:11073, HGNC:11530, HGNC:20862, HGNC:2389, HGNC:633, HGNC:633 +UBERON:0001289 descending limb of loop of Henle Loop of Henle (Thin Limb) CL:4030014 kidney loop of Henle long descending thin limb inner medulla epithelial cell Descending Thin Limb Cell Type 3 HGNC:10832, HGNC:10919, HGNC:11530, HGNC:16438, HGNC:2032, HGNC:2303, HGNC:2389 DOI:10.1101/2021.07.28.454201|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1038/s41467-019-10861-2|DOI:10.1152/ajprenal.2000.278.2.F202|DOI:10.1152/ajprenal.2000.278.1.F52|DOI:10.1681/ASN.2020010071|PMID:31689386 +UBERON:0001232 collecting duct of renal tubule Collecting Duct CL:4030015 kidney collecting duct alpha-intercalated cell Collecting Duct Intercalated Cell Type A HGNC:11027, HGNC:14467, HGNC:27220, HGNC:6342, HGNC:639 DOI:10.1038/s41467-019-10861-2|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|PMID:31249312|PMCID:PMC6597610|PMID:31689386 +UBERON:0001292 distal convoluted tubule Distal Convolution CL:4030016 epithelial cell of early distal convoluted tubule Distal Convoluted Tubule Cell Type 1 HGNC:10912, HGNC:17995 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1681/ASN.2020010071|DOI:10.1681/ASN.2020010071|PMID:31249312|PMCID:PMC6597610|PMID:32358040 +UBERON:0001292 distal convoluted tubule Distal Convolution CL:4030017 epithelial cell of late distal convoluted tubule Distal Convoluted Tubule Cell Type 2 HGNC:10602, HGNC:10912, HGNC:11068, HGNC:1434, HGNC:3145, HGNC:5209 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1681/ASN.2020010071|DOI:10.1681/ASN.2020010071|PMID:31249312|PMCID:PMC6597610|PMID:32358040 +UBERON:0005097 renal connecting tubule Connecting Tubule CL:4030018 kidney connecting tubule principal cell Connecting Tubule Principal Cell HGNC:10602, HGNC:4028, HGNC:634, HGNC:634, HGNC:636 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1681/ASN.2020010071|DOI:10.1038/s41586-020-2941-1|PMID:31249312|PMCID:PMC6597610|PMID:32358040 +UBERON:0005097 renal connecting tubule Connecting Tubule CL:4030019 kidney connecting tubule intercalated cell Connecting Tubule Intercalated Cell HGNC:11068, HGNC:1373, HGNC:18266 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1681/ASN.2020010071|DOI:10.1038/s41586-020-2941-1|PMID:31249312|PMCID:PMC6597610|PMID:32358040 +UBERON:0005097 renal connecting tubule Connecting Tubule CL:4030020 kidney connecting tubule alpha-intercalated cell Connecting Tubule Intercalated Cell Type A HGNC:11027, HGNC:11068, HGNC:14467, HGNC:639, HGNC:8076 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1681/ASN.2020010071|PMID:31249312|PMCID:PMC6597610|PMID:32358040 +UBERON:0005097 renal connecting tubule Connecting Tubule CL:4030021 kidney connecting tubule beta-intercalated cell Intercalated Cell Type B HGNC:11035, HGNC:23616, HGNC:6093, HGNC:8818 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1681/ASN.2020010071|PMID:31249312|PMCID:PMC6597610|PMID:32358040 +UBERON:0005215 kidney interstitium Interstitium CL:4030022 renal medullary fibroblast Medullary Fibroblast HGNC:11509, HGNC:24039, HGNC:2705, HGNC:5318, HGNC:6277, HGNC:7656 DOI:10.1101/2021.07.28.454201 diff --git a/logs/ct_loc_markers/Knee_report.tsv b/logs/ct_loc_markers/Knee_report.tsv new file mode 100644 index 000000000..311060486 --- /dev/null +++ b/logs/ct_loc_markers/Knee_report.tsv @@ -0,0 +1,7 @@ +Terminal AS/ID Terminal AS/label Terminal AS/user_label Terminal CT/ID Terminal CT/label Terminal CT/user_label Markers References +UBERON:0009980 condyle of femur Distal Femur CL:0000062 osteoblast osteoblast HGNC:2197, HGNC:5341 +UBERON:0009980 condyle of femur Distal Femur CL:0000137 osteocyte osteocyte HGNC:2197, HGNC:2932 +UBERON:4000088 mineralized cartilage tissue Mineralized Cartilage CL:0000743 hypertrophic chondrocyte hypertrophic chondrocyte HGNC:2185, HGNC:5341 +UBERON:0009980 condyle of femur Distal Femur CL:0000778 mononuclear osteoclast mononuclear osteoclast HGNC:124 +UBERON:0009980 condyle of femur Distal Femur CL:0000779 multinuclear osteoclast multinuclear osteoclast HGNC:124, HGNC:2536 +UBERON:0009980 condyle of femur Distal Femur CL:1001607 articular chondrocyte articular chondrocyte HGNC:2200, HGNC:2201 diff --git a/logs/ct_loc_markers/Large_intestine_report.tsv b/logs/ct_loc_markers/Large_intestine_report.tsv new file mode 100644 index 000000000..624175ce7 --- /dev/null +++ b/logs/ct_loc_markers/Large_intestine_report.tsv @@ -0,0 +1,166 @@ +Terminal AS/ID Terminal AS/label Terminal AS/user_label Terminal CT/ID Terminal CT/label Terminal CT/user_label Markers References +UBERON:0008974 apocrine gland apocrine gland CL:0000033 apocrine cell apocrine HGNC:6445, HGNC:6445 NoDOI +UBERON:0013485 crypt of Lieberkuhn of colon crypt CL:0000041 mature eosinophil eosinophil HGNC:4502, HGNC:4502, HGNC:6149, HGNC:6149 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 +UBERON:0001961 mucosa-associated lymphoid tissue dermal skin-associated lymphoid tissue CL:0000041 mature eosinophil eosinophil HGNC:4502, HGNC:4502, HGNC:6149, HGNC:6149 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/lamina propria CL:0000041 mature eosinophil eosinophil HGNC:4502, HGNC:4502, HGNC:6149, HGNC:6149 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 +UBERON:0005742 adventitia adventitia CL:0000057 fibroblast fibroblast HGNC:2211, HGNC:2211, HGNC:2212, HGNC:2212 NoDOI +UBERON:0003331 submucosa of colon submucosa CL:0000057 fibroblast fibroblast HGNC:2211, HGNC:2211, HGNC:2212, HGNC:2212 NoDOI +UBERON:0002439 myenteric nerve plexus myenteric plexus of Auerbach CL:0000057 fibroblast fibroblast HGNC:2211, HGNC:2211, HGNC:2212, HGNC:2212 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 +UBERON:0003329 submucosa of anal canal submucosa CL:0000057 fibroblast fibroblast HGNC:2211, HGNC:2211, HGNC:2212, HGNC:2212 NoDOI +UBERON:0007178 muscularis mucosae of colon muscularis mucosa CL:0000057 fibroblast fibroblast HGNC:2211, HGNC:2211, HGNC:2212, HGNC:2212 NoDOI +UBERON:0012399 large intestine smooth muscle longitudinal layer longitudinal muscle layer CL:0000057 fibroblast fibroblast HGNC:2211, HGNC:2211, HGNC:2212, HGNC:2212 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 +UBERON:0004927 submucosa of cecum submucosa CL:0000057 fibroblast fibroblast HGNC:2211, HGNC:2211, HGNC:2212, HGNC:2212 NoDOI +UBERON:0002384 connective tissue fibroconnective tissue CL:0000057 fibroblast fibroblast HGNC:2211, HGNC:2211, HGNC:2212, HGNC:2212 NoDOI +UBERON:0012375 subserosa subserosa CL:0000057 fibroblast fibroblast HGNC:2211, HGNC:2211, HGNC:2212, HGNC:2212 NoDOI +UBERON:0011189 lamina propria of large intestine lamina propria CL:0000057 fibroblast fibroblast HGNC:2211, HGNC:2211, HGNC:2212, HGNC:2212 DOI:10.1111/j.1440-1827.1989.tb02421.x|DOI:10.1034/j.1600-065x.2003.00072.x|PMID:2618659|PMID:12969318 +UBERON:0012398 large intestine smooth muscle circular layer circular muscle layer CL:0000057 fibroblast fibroblast HGNC:2211, HGNC:2211, HGNC:2212, HGNC:2212 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 +UBERON:0007177 lamina propria of mucosa of colon lamina propria CL:0000057 fibroblast fibroblast HGNC:2211, HGNC:2211, HGNC:2212, HGNC:2212 DOI:10.1111/j.1440-1827.1989.tb02421.x|DOI:10.1034/j.1600-065x.2003.00072.x|PMID:2618659|PMID:12969318 +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/lamina propria CL:0000096 mature neutrophil neutrophil (normally intravascular only) HGNC:3619, HGNC:3619, HGNC:4015, HGNC:4015 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/lamina propria CL:0000097 mast cell mast cell HGNC:10922, HGNC:10922, HGNC:6342, HGNC:6342 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 +UBERON:0001961 mucosa-associated lymphoid tissue dermal skin-associated lymphoid tissue CL:0000097 mast cell mast cell HGNC:10922, HGNC:10922, HGNC:6342, HGNC:6342 NoDOI +UBERON:0005742 adventitia adventitia CL:0000136 fat cell adipocyte HGNC:1050, HGNC:1050 NoDOI +UBERON:0003329 submucosa of anal canal submucosa CL:0000136 fat cell adipocyte HGNC:1050, HGNC:1050 NoDOI +UBERON:0002384 connective tissue fibroconnective tissue CL:0000136 fat cell adipocyte HGNC:1050, HGNC:1050 NoDOI +UBERON:0004927 submucosa of cecum submucosa CL:0000136 fat cell adipocyte HGNC:1050, HGNC:1050 NoDOI +UBERON:0012375 subserosa subserosa CL:0000136 fat cell adipocyte HGNC:1050, HGNC:1050 NoDOI +UBERON:0003331 submucosa of colon submucosa CL:0000136 fat cell adipocyte HGNC:1050, HGNC:1050 NoDOI +UBERON:0004760 gland of anal canal anal gland CL:0000146 simple columnar epithelial cell columnar HGNC:6445, HGNC:6445 NoDOI +UBERON:0015716 anal canal epithelium epithelium CL:0000148 melanocyte melanocyte HGNC:10500, HGNC:10500, HGNC:1119, HGNC:11190, HGNC:7124, HGNC:7124 NoDOI +UBERON:0001003 skin epidermis epidermis CL:0000148 melanocyte melanocyte HGNC:1050, HGNC:1050 NoDOI +UBERON:0011189 lamina propria of large intestine lamina propria CL:0000165 neuroendocrine cell HGNC:11506, HGNC:11506, HGNC:1929, HGNC:1929, HGNC:6090, HGNC:6090 DOI:10.1111/j.1440-1827.1989.tb02421.x|DOI:10.1034/j.1600-065x.2003.00072.x|PMID:2618659|PMID:12969318 +UBERON:0022281 epithelium of crypt of Lieberkuhn of large intestine epithelium CL:0000165 neuroendocrine HGNC:11506, HGNC:11506, HGNC:1929, HGNC:1929, HGNC:6088, HGNC:6088, HGNC:6090, HGNC:6090 DOI:10.1159/000501521|DOI:10.3892/or.2012.2119|PMID:31390635PMCID:PMC6888884|PMID:23128569 +UBERON:0011184 epithelium of crypt of Lieberkuhn epithelium CL:0000165 neuroendocrine cell neuroendocrine HGNC:11506, HGNC:11506, HGNC:1929, HGNC:1929, HGNC:6088, HGNC:6088, HGNC:6090, HGNC:6090 DOI:10.1159/000501521|PMID:31390635PMCID:PMC6888884 +UBERON:0007177 lamina propria of mucosa of colon lamina propria CL:0000165 neuroendocrine cell neuroendocrine cell HGNC:11506, HGNC:11506, HGNC:1929, HGNC:1929, HGNC:6090, HGNC:6090 DOI:10.1111/j.1440-1827.1989.tb02421.x|DOI:10.1034/j.1600-065x.2003.00072.x|PMID:2618659|PMID:12969318 +UBERON:0007177 lamina propria of mucosa of colon lamina propria CL:0000186 myofibroblast cell myofibroblast HGNC:130, HGNC:130 DOI:10.1111/j.1440-1827.1989.tb02421.x|DOI:10.1034/j.1600-065x.2003.00072.x|PMID:2618659|PMID:12969318 +UBERON:0011189 lamina propria of large intestine lamina propria CL:0000186 myofibroblast cell myofibroblast HGNC:130, HGNC:130 DOI:10.1111/j.1440-1827.1989.tb02421.x|DOI:10.1034/j.1600-065x.2003.00072.x|PMID:2618659|PMID:12969318 +UBERON:0001367 external anal sphincter external anal sphincter CL:0000188 cell of skeletal muscle skeletal muscle HGNC:2770, HGNC:2770 NoDOI +UBERON:0012419 taenia coli tenia coli CL:0000192 smooth muscle cell smooth muscle HGNC:130, HGNC:130 NoDOI +UBERON:0001961 mucosa-associated lymphoid tissue dermal skin-associated lymphoid tissue CL:0000235 macrophage macrophage HGNC:1631, HGNC:1631, HGNC:1693, HGNC:1693, HGNC:1697, HGNC:1697, HGNC:6149, HGNC:6149, HGNC:7228, HGNC:7228 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 +UBERON:0001961 mucosa-associated lymphoid tissue subcutaneous skin-associated lymphoid tissue CL:0000235 macrophage macrophage HGNC:1673, HGNC:1673, HGNC:1678, HGNC:1678 NoDOI +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/Isolated lymphoid follicles (ILF) CL:0000235 macrophage macrophage HGNC:1631, HGNC:1631, HGNC:1693, HGNC:1693, HGNC:1697, HGNC:1697, HGNC:6149, HGNC:6149, HGNC:7228, HGNC:7228 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 +UBERON:0001961 mucosa-associated lymphoid tissue dermal skin-associated lymphoid tissue CL:0000236 B cell B cell HGNC:1633, HGNC:1633, HGNC:1698, HGNC:1698 NoDOI +UBERON:0001961 mucosa-associated lymphoid tissue subcutaneous skin-associated lymphoid tissue CL:0000236 B cell B cell HGNC:4502, HGNC:4502, HGNC:6149, HGNC:6149 NoDOI +UBERON:0015716 anal canal epithelium epithelium CL:0000240 stratified squamous epithelial cell squamous HGNC:1911, HGNC:1911, HGNC:23600, HGNC:6445 NoDOI +UBERON:0001003 skin epidermis epidermis CL:0000242 Merkel cell Merkel HGNC:20412, HGNC:20412 NoDOI +UBERON:0015716 anal canal epithelium epithelium CL:0000242 Merkel cell Merkel HGNC:11506, HGNC:11506, HGNC:1929, HGNC:1929, HGNC:20412, HGNC:20412 NoDOI +UBERON:0004760 gland of anal canal anal gland CL:0000244 transitional HGNC:6436, HGNC:6436, HGNC:6445, HGNC:6445 NoDOI +UBERON:0015716 anal canal epithelium epithelium CL:0000244 transitional HGNC:6436, HGNC:6436, HGNC:6445, HGNC:6445 NoDOI +UBERON:0002073 hair follicle hair follicle CL:0000312 keratinocyte keratinocyte HGNC:23600, HGNC:23600 NoDOI +UBERON:0001003 skin epidermis epidermis CL:0000312 keratinocyte keratinocyte HGNC:23600, HGNC:23600 NoDOI +UBERON:0001821 sebaceous gland sebaceous gland CL:0000317 sebum secreting cell sebocyte HGNC:6445, HGNC:6445 NoDOI +UBERON:0000055 vessel vessel CL:0000359 vascular associated smooth muscle cell perivascular smooth muscle cell HGNC:130, HGNC:130 NoDOI +UBERON:0000423 eccrine sweat gland eccrine sweat gland CL:0000434 eccrine cell eccrine HGNC:6445, HGNC:6445 NoDOI +UBERON:0001961 mucosa-associated lymphoid tissue dermal skin-associated lymphoid tissue CL:0000451 dendritic cell dendritic cell HGNC:6147, HGNC:6147, HGNC:6149, HGNC:6149 NoDOI +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/lamina propria CL:0000451 dendritic cell dendritic cell HGNC:1697, HGNC:1697, HGNC:6012, HGNC:6012, HGNC:6152, HGNC:6152 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 +UBERON:0001003 skin epidermis epidermis CL:0000453 Langerhans cell langerhans HGNC:1634, HGNC:1634 NoDOI +UBERON:0015716 anal canal epithelium epithelium CL:0000453 Langerhans cell langerhans cells HGNC:1634, HGNC:1634, HGNC:17935, HGNC:17935 NoDOI +UBERON:0001961 mucosa-associated lymphoid tissue dermal skin-associated lymphoid tissue CL:0000545 T-helper 1 cell T helper HGNC:1673, HGNC:1673, HGNC:1678, HGNC:1678 NoDOI +UBERON:0001961 mucosa-associated lymphoid tissue subcutaneous skin-associated lymphoid tissue CL:0000545 T-helper 1 cell T helper HGNC:1673, HGNC:1673, HGNC:1706, HGNC:1706 NoDOI +UBERON:0003329 submucosa of anal canal submucosa CL:0000669 pericyte pericyte HGNC:8804, HGNC:8804 NoDOI +UBERON:0012399 large intestine smooth muscle longitudinal layer longitudinal muscle layer CL:0000669 pericyte pericyte HGNC:8804, HGNC:8823 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 +UBERON:0002439 myenteric nerve plexus myenteric plexus of Auerbach CL:0000669 pericyte pericyte HGNC:8804, HGNC:8804 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 +UBERON:0003331 submucosa of colon submucosa CL:0000669 pericyte pericyte HGNC:8804, HGNC:8804 NoDOI +UBERON:0000055 vessel vessel CL:0000669 pericyte pericyte HGNC:8823, HGNC:8823 NoDOI +UBERON:0005742 adventitia adventitia CL:0000669 pericyte pericyte HGNC:8804, HGNC:8804 NoDOI +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/Isolated lymphoid follicles (ILF) CL:0000669 pericyte pericyte HGNC:8804, HGNC:8804 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 +UBERON:0007177 lamina propria of mucosa of colon lamina propria CL:0000669 pericyte pericyte HGNC:8804, HGNC:8804 DOI:10.1111/j.1440-1827.1989.tb02421.x|DOI:10.1034/j.1600-065x.2003.00072.x|PMID:2618659|PMID:12969318 +UBERON:0011189 lamina propria of large intestine lamina propria CL:0000669 pericyte pericyte HGNC:8804, HGNC:8804 DOI:10.1111/j.1440-1827.1989.tb02421.x|DOI:10.1034/j.1600-065x.2003.00072.x|PMID:2618659|PMID:12969318 +UBERON:0007178 muscularis mucosae of colon muscularis mucosa CL:0000669 pericyte pericyte HGNC:8804, HGNC:8804 NoDOI +UBERON:0012375 subserosa subserosa CL:0000669 pericyte pericyte HGNC:8804, HGNC:8804 NoDOI +UBERON:0012398 large intestine smooth muscle circular layer circular muscle layer CL:0000669 pericyte pericyte HGNC:8804, HGNC:8804 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 +UBERON:0004927 submucosa of cecum submucosa CL:0000669 pericyte pericyte HGNC:8804, HGNC:8804 NoDOI +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/lamina propria CL:0000786 plasma cell plasma cell HGNC:10658, HGNC:10658 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 +UBERON:0000397 colonic epithelium lymphcyte CL:0000793 CD4-positive, alpha-beta intraepithelial T cell surface intraepithelial CD4+ lymphocyte HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1678, HGNC:1678, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695, HGNC:1695 DOI:10.1093/intimm/7.9.1473|PMID:7495755 +UBERON:0000397 colonic epithelium epithelium CL:0000793 CD4-positive, alpha-beta intraepithelial T cell surface intraepithelial CD4+ lymphocyte HGNC:1639, HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1678, HGNC:1678, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695 DOI:10.1093/intimm/7.9.1473|PMID:7495755 +UBERON:0000397 colonic epithelium lymphocyte CL:0000796 CD8-alpha-beta-positive, alpha-beta intraepithelial T cell surface intraepithelial CD8+ alph beta positive alpha/beta lymphocyte HGNC:1639, HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695, HGNC:1706, HGNC:1706 DOI:10.1093/intimm/7.9.1473|PMID:7495755 +UBERON:0000397 colonic epithelium lymphocyte CL:0000802 CD8-alpha alpha positive, gamma-delta intraepithelial T cell surface intraepithelial CD8+ lymphocyte gamma/delta HGNC:1639, HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695, HGNC:1706, HGNC:1706 DOI:10.1093/intimm/7.9.1473|PMID:7495755 +UBERON:0001961 mucosa-associated lymphoid tissue subcutaneous skin-associated lymphoid tissue CL:0000815 regulatory T cell T reg HGNC:1633, HGNC:1633, HGNC:1698, HGNC:1698 NoDOI +UBERON:0001961 mucosa-associated lymphoid tissue dermal skin-associated lymphoid tissue CL:0000815 regulatory T cell T reg HGNC:1673, HGNC:1673, HGNC:1678, HGNC:1678, HGNC:6106, HGNC:6106 NoDOI +UBERON:0001961 mucosa-associated lymphoid tissue subcutaneous skin-associated lymphoid tissue CL:0000910 cytotoxic T cell T killer HGNC:1673, HGNC:1673, HGNC:1678, HGNC:1678, HGNC:6106, HGNC:6106 NoDOI +UBERON:0001961 mucosa-associated lymphoid tissue dermal skin-associated lymphoid tissue CL:0000910 cytotoxic T cell T killer HGNC:1673, HGNC:1673, HGNC:1706, HGNC:1706 NoDOI +UBERON:0000397 colonic epithelium lymphocyte CL:0000915 CD8-alpha-alpha-positive, alpha-beta intraepithelial T cell surface intraepithelial CD8+ alph alpha positive alpha/beta lymphocyte HGNC:1639, HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695, HGNC:1706, HGNC:1706 DOI:10.1093/intimm/7.9.1473|PMID:7495755 +UBERON:0005636 caecum epithelium epithelium CL:0000915 CD8-alpha-alpha-positive, alpha-beta intraepithelial T cell surface intraepithelial CD8+ alpha alpha positive alpha/beta lymphocyte HGNC:1639, HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695, HGNC:1706, HGNC:1706 DOI:10.1093/intimm/7.9.1473|PMID:7495755 +UBERON:0000397 colonic epithelium lymphocyte CL:0000935 CD4-negative, CD8-negative, alpha-beta intraepithelial T cell surface intraepithelial CD4-CD8- lymphocyte alpha/beta HGNC:1639, HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695 DOI:10.1093/intimm/7.9.1473|PMID:7495755 +UBERON:0000397 colonic epithelium epithelium CL:0000935 CD4-negative, CD8-negative, alpha-beta intraepithelial T cell surface intraepithelial CD4-CD8- lymphocyte alpha/beta HGNC:1639, HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:921 DOI:10.1093/intimm/7.9.1473|PMID:7495755 +UBERON:0000397 colonic epithelium lymphocyte CL:0000935 CD4-negative, CD8-negative, alpha-beta intraepithelial T cell surface intraepithelial CD4-CD8- lymphocyte alpha/beta HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695, HGNC:1695 DOI:10.1093/intimm/7.9.1473|PMID:7495755 +UBERON:0000055 vessel vessel CL:0002042 immature NK T cell stage IV lymphatic endothelium HGNC:29602, HGNC:29602, HGNC:8823, HGNC:8823 NoDOI +UBERON:0000397 colonic epithelium epithelium CL:0002071 enterocyte of epithelium of large intestine absorptive HGNC:17106, HGNC:17106, HGNC:20412, HGNC:20412 DOI:10.1038/s42003-020-01181-z|PMID:32814826PMCID:PMC7438495 +UBERON:0011184 epithelium of crypt of Lieberkuhn epithelium CL:0002071 enterocyte of epithelium of large intestine absorptive HGNC:17106, HGNC:17106, HGNC:20412, HGNC:20412 DOI:10.1038/s42003-020-01181-z|PMID:32814826PMCID:PMC7438495 +UBERON:0022281 epithelium of crypt of Lieberkuhn of large intestine epithelium CL:0002071 enterocyte of epithelium of large intestine absorptive HGNC:17106, HGNC:17106, HGNC:20412, HGNC:20412 DOI:10.1038/s42003-020-01181-z|PMID:32814826PMCID:PMC7438495 +UBERON:0003331 submucosa of colon submucosa CL:0002088 interstitial cell of Cajal interstitial cell of Cajal HGNC:1662, HGNC:1662, HGNC:6342, HGNC:6342 DOI:10.1007/978-1-4939-0897-4_3|DOI:10.1152/ajpgi.00432.2011|PMID:24997029|PMID:22421617PMCID:PMC3362097 +UBERON:0002439 myenteric nerve plexus myenteric plexus of Auerbach CL:0002088 interstitial cell of Cajal interstitial cell of Cajal HGNC:1662, HGNC:1662, HGNC:6342, HGNC:6342 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 +UBERON:0002439 myenteric nerve plexus myenteric plexus of Auerbach CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelium HGNC:12513, HGNC:12513, HGNC:17635, HGNC:17635, HGNC:7656, HGNC:7656 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/Isolated lymphoid follicles (ILF) CL:0002138 endothelial cell of lymphatic vessel ILF lymphatic endothelium HGNC:14687, HGNC:14687 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 +UBERON:0003331 submucosa of colon submucosa CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelium HGNC:29602, HGNC:29602, HGNC:8823, HGNC:8823 NoDOI +UBERON:0012399 large intestine smooth muscle longitudinal layer longitudinal muscle layer CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelium HGNC:29602, HGNC:29602, HGNC:8823, HGNC:8823 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 +UBERON:0003329 submucosa of anal canal submucosa CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelium HGNC:29602, HGNC:29602, HGNC:8823, HGNC:8823 NoDOI +UBERON:0005742 adventitia adventitia CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelium HGNC:29602, HGNC:29602, HGNC:8823, HGNC:8823 NoDOI +UBERON:0011189 lamina propria of large intestine lamina propria CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelium HGNC:29602, HGNC:29602, HGNC:8823, HGNC:8823 DOI:10.1111/j.1440-1827.1989.tb02421.x|DOI:10.1034/j.1600-065x.2003.00072.x|PMID:2618659|PMID:12969318 +UBERON:0012375 subserosa subserosa CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelium HGNC:29602, HGNC:29602, HGNC:8823, HGNC:8823 NoDOI +UBERON:0012398 large intestine smooth muscle circular layer circular muscle layer CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelium HGNC:29602, HGNC:29602, HGNC:8823, HGNC:8823 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 +UBERON:0007178 muscularis mucosae of colon muscularis mucosa CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelium HGNC:29602, HGNC:29602, HGNC:8823, HGNC:8823 NoDOI +UBERON:0007177 lamina propria of mucosa of colon lamina propria CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelium HGNC:29602, HGNC:29602, HGNC:8823, HGNC:8823 DOI:10.1111/j.1440-1827.1989.tb02421.x|DOI:10.1034/j.1600-065x.2003.00072.x|PMID:2618659|PMID:12969318 +UBERON:0004927 submucosa of cecum submucosa CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelium HGNC:29602, HGNC:29602, HGNC:8823, HGNC:8823 NoDOI +UBERON:0011189 lamina propria of large intestine lamina propria CL:0002144 capillary endothelial cell capillary endothelium HGNC:1662, HGNC:1662, HGNC:1663, HGNC:1663, HGNC:8823, HGNC:8823 DOI:10.1111/j.1440-1827.1989.tb02421.x|DOI:10.1034/j.1600-065x.2003.00072.x|PMID:2618659|PMID:12969318 +UBERON:0003331 submucosa of colon submucosa CL:0002144 capillary endothelial cell capillary endothelium HGNC:1662, HGNC:1662, HGNC:1663, HGNC:1663, HGNC:8823, HGNC:8823 DOI:10.1111/j.1440-1827.1989.tb02421.x|DOI:10.1034/j.1600-065x.2003.00072.x|PMID:2618659|PMID:12969318 +UBERON:0007178 muscularis mucosae of colon muscularis mucosa CL:0002144 capillary endothelial cell capillary endothelium HGNC:1662, HGNC:1662, HGNC:1663, HGNC:1663, HGNC:8823, HGNC:8823 NoDOI +UBERON:0007177 lamina propria of mucosa of colon lamina propria CL:0002144 capillary endothelial cell capillary endothelium HGNC:1662, HGNC:1662, HGNC:1663, HGNC:1663, HGNC:8823, HGNC:8823 DOI:10.1111/j.1440-1827.1989.tb02421.x|DOI:10.1034/j.1600-065x.2003.00072.x|PMID:2618659|PMID:12969318 +UBERON:0000055 vessel vessel CL:0002292 type I cell of carotid body glomus cell HGNC:130, HGNC:130, HGNC:3023, HGNC:3023 NoDOI +UBERON:0000055 vessel vessel CL:0002543 vein endothelial cell venous endothelium HGNC:1662, HGNC:1662, HGNC:1663, HGNC:1663, HGNC:8823, HGNC:8823 NoDOI +UBERON:0012398 large intestine smooth muscle circular layer circular muscle layer CL:0002573 Schwann cell nerve HGNC:1050, HGNC:1050, HGNC:1119, HGNC:1119, HGNC:12513, HGNC:12513 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 +UBERON:0004927 submucosa of cecum submucosa CL:0002573 Schwann cell nerve HGNC:1050, HGNC:1050, HGNC:1119, HGNC:1119, HGNC:12513, HGNC:12513 NoDOI +UBERON:0006134 nerve fiber nerve CL:0002573 Schwann cell schwann cell HGNC:10492, HGNC:10492 NoDOI +UBERON:0003329 submucosa of anal canal submucosa CL:0002573 Schwann cell nerve HGNC:1050, HGNC:1050, HGNC:1119, HGNC:1119, HGNC:12513, HGNC:12513 NoDOI +UBERON:0011189 lamina propria of large intestine lamina propria CL:0002573 Schwann cell nerve/schwann cell HGNC:1050, HGNC:1050, HGNC:12513, HGNC:12513, HGNC:7656, HGNC:7656 DOI:10.1111/j.1440-1827.1989.tb02421.x|DOI:10.1034/j.1600-065x.2003.00072.x|PMID:2618659|PMID:12969318 +UBERON:0012375 subserosa subserosa CL:0002573 Schwann cell nerve HGNC:1050, HGNC:1050, HGNC:1119, HGNC:1119, HGNC:12513, HGNC:12513 NoDOI +UBERON:0002439 myenteric nerve plexus myenteric plexus of Auerbach CL:0002573 Schwann cell nerve HGNC:1050, HGNC:1050, HGNC:1119, HGNC:1119, HGNC:12513, HGNC:12513 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 +UBERON:0003331 submucosa of colon submucosa CL:0002573 Schwann cell nerve HGNC:1050, HGNC:1050, HGNC:1119, HGNC:1119, HGNC:12513, HGNC:12513 NoDOI +UBERON:0005304 submucous nerve plexus submucosal plexus of Meissner CL:0002573 Schwann cell nerve HGNC:1050, HGNC:1050, HGNC:1119, HGNC:1119, HGNC:12513, HGNC:12513 NoDOI|PMID:2621148PMCID:PMC1256735 +UBERON:0007178 muscularis mucosae of colon muscularis mucosa CL:0002573 Schwann cell nerve HGNC:12513, HGNC:12513, HGNC:17635, HGNC:17635, HGNC:7656, HGNC:7656 NoDOI +UBERON:0005742 adventitia adventitia CL:0002573 Schwann cell nerve HGNC:1050, HGNC:1050, HGNC:1119, HGNC:1119, HGNC:12513, HGNC:12513 NoDOI +UBERON:0012399 large intestine smooth muscle longitudinal layer longitudinal muscle layer CL:0002573 Schwann cell nerve HGNC:1050, HGNC:1050, HGNC:1119, HGNC:1119, HGNC:12513, HGNC:12513 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 +UBERON:0007177 lamina propria of mucosa of colon lamina propria CL:0002573 Schwann cell nerve/schwann cell HGNC:1050, HGNC:1050, HGNC:12513, HGNC:12513, HGNC:7656, HGNC:7656 DOI:10.1111/j.1440-1827.1989.tb02421.x|DOI:10.1034/j.1600-065x.2003.00072.x|PMID:2618659|PMID:12969318 +UBERON:0006134 nerve fiber nerve CL:0002576 perineurial cell perineurial cell HGNC:1662, HGNC:1662 NoDOI +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/Isolated lymphoid follicles (ILF) CL:0002652 endothelial cell of high endothelial venule ILV high endothelial venule endothelium HGNC:6765, HGNC:6765 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 +UBERON:0022281 epithelium of crypt of Lieberkuhn of large intestine epithelium CL:0009009 paneth cell of colon Paneth HGNC:2764, HGNC:2764 DOI:10.1016/j.humpath.2008.12.003|PMID:19269007 +UBERON:0011184 epithelium of crypt of Lieberkuhn epithelium CL:0009009 paneth cell of epithelium of large intestine Paneth HGNC:2764, HGNC:2764 DOI:10.1016/j.humpath.2008.12.003|PMID:19269007 +UBERON:0011184 epithelium of crypt of Lieberkuhn epithelium CL:0009011 transit amplifying cell of colon transient amplifying cell HGNC:20412, HGNC:20412 DOI:10.1038/s42003-020-01181-z|PMID:32814826PMCID:PMC7438495 +UBERON:0022281 epithelium of crypt of Lieberkuhn of large intestine epithelium CL:0009011 transit amplifying cell of colon transient amplifying cell HGNC:20412, HGNC:20412 DOI:10.1038/s42003-020-01181-z|PMID:32814826PMCID:PMC7438495 +UBERON:0022281 epithelium of crypt of Lieberkuhn of large intestine epithelium CL:0009016 intestinal crypt stem cell of large intestine epithelial stem cell HGNC:11204, HGNC:11204, HGNC:1681, HGNC:1681, HGNC:17360, HGNC:17360, HGNC:20323, HGNC:20323, HGNC:26896, HGNC:26896, HGNC:4504, HGNC:4504 DOI:10.1038/nature06196|PMID:17934449 +UBERON:0011184 epithelium of crypt of Lieberkuhn epithelium CL:0009016 intestinal crypt stem cell of large intestine epithelial stem cell HGNC:11204, HGNC:11204, HGNC:1681, HGNC:1681, HGNC:17360, HGNC:17360, HGNC:20323, HGNC:20323, HGNC:26896, HGNC:26896, HGNC:4504, HGNC:4504 DOI:10.1038/nature06196|PMID:17934449 +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/Isolated lymphoid follicles (ILF) CL:0009018 macrophage CD8+ T cell HGNC:1639, HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695, HGNC:1706, HGNC:1706 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/Isolated lymphoid follicles (ILF) CL:0009018 lymphocyte of large intestine lamina propria regulatory CD4+ T cell HGNC:1678, HGNC:1678, HGNC:6008, HGNC:6008, HGNC:6106, HGNC:6106 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/Isolated lymphoid follicles (ILF) CL:0009018 lymphocyte of large intestine lamina propria CD4+ T cell HGNC:1639, HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1678, HGNC:1678, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/Isolated lymphoid follicles (ILF) CL:0009018 lymphocyte of large intestine lamina propria CD4+ T cell HGNC:1639, HGNC:1639, HGNC:1676, HGNC:1676, HGNC:1678, HGNC:1678, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/Isolated lymphoid follicles (ILF) CL:0009018 lymphocyte of large intestine lamina propria B cell HGNC:1633, HGNC:1633, HGNC:1698, HGNC:1698, HGNC:2336, HGNC:2336, HGNC:7315, HGNC:7315 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/lamina propria CL:0009018 lymphocyte of large intestine lamina propria NK cell HGNC:18788, HGNC:18788, HGNC:6152, HGNC:6152, HGNC:7656, HGNC:7656, HGNC:921, HGNC:921 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/Isolated lymphoid follicles (ILF) CL:0009018 lymphocyte of large intestine lamina propria NK cell HGNC:1695, HGNC:18788, HGNC:18788, HGNC:6152, HGNC:6152, HGNC:7656, HGNC:7656, HGNC:921 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/lamina propria CL:0009018 lymphocyte of large intestine lamina propria innate lymphoid cell HGNC:6024, HGNC:6024, HGNC:6342, HGNC:6342, HGNC:6373, HGNC:6373 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 +UBERON:0011184 epithelium of crypt of Lieberkuhn epithelium CL:0019032 intestinal tuft cell tuft cell HGNC:14323, HGNC:14323, HGNC:19864, HGNC:19864, HGNC:20412, HGNC:20412, HGNC:2700, HGNC:2700, HGNC:9604, HGNC:9604 DOI:10.1038/s42003-020-01181-z|DOI:10.1038/s41598-019-53997-3|DOI:10.4049/jimmunol.1801069|PMID:32814826PMCID:PMC7438495|PMID:31767912PMCID:PMC6877571|PMID:30782851PMCID:PMC6383804 +UBERON:0022281 epithelium of crypt of Lieberkuhn of large intestine epithelium CL:0019032 intestinal tuft cell tuft cell HGNC:14323, HGNC:14323, HGNC:19864, HGNC:19864, HGNC:20412, HGNC:20412, HGNC:2700, HGNC:2700, HGNC:9604, HGNC:9604 DOI:10.1038/s42003-020-01181-z|DOI:10.1038/s41598-019-53997-3|DOI:10.4049/jimmunol.1801069|PMID:32814826PMCID:PMC7438495|PMID:31767912PMCID:PMC6877571|PMID:30782851PMCID:PMC6383804 +UBERON:0012398 large intestine smooth muscle circular layer circular muscle layer CL:1000279 smooth muscle cell of large intestine muscle HGNC:11126, HGNC:11126, HGNC:130, HGNC:130 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 +UBERON:0012399 large intestine smooth muscle longitudinal layer longitudinal muscle layer CL:1000279 smooth muscle cell of large intestine muscle HGNC:11126, HGNC:11126, HGNC:130, HGNC:130 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 +UBERON:0011184 epithelium of crypt of Lieberkuhn epithelium CL:1000321 large intestine crypt goblet cell goblet HGNC:20412, HGNC:20412, HGNC:7512, HGNC:7512 DOI:10.1038/s42003-020-01181-z|PMID:32814826PMCID:PMC7438495 +UBERON:0000397 colonic epithelium epithelium CL:1000321 large intestine crypt goblet cell goblet HGNC:20412, HGNC:20412, HGNC:7512, HGNC:7512 DOI:10.1038/s42003-020-01181-z|PMID:32814826PMCID:PMC7438495 +UBERON:0022281 epithelium of crypt of Lieberkuhn of large intestine epithelium CL:1000321 large intestine crypt goblet cell goblet HGNC:20412, HGNC:20412, HGNC:7512, HGNC:7512 DOI:10.1038/s42003-020-01181-z|PMID:32814826PMCID:PMC7438495 +UBERON:0005742 adventitia adventitia CL:1000412 endothelial cell of arteriole arteriole endothelium HGNC:1662, HGNC:1662, HGNC:1663, HGNC:1663, HGNC:8823, HGNC:8823 NoDOI +UBERON:0012398 large intestine smooth muscle circular layer circular muscle layer CL:1000412 endothelial cell of arteriole arteriole endothelium HGNC:1662, HGNC:1662, HGNC:1663, HGNC:1663, HGNC:8823, HGNC:8823 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 +UBERON:0003331 submucosa of colon submucosa CL:1000412 endothelial cell of arteriole arteriole endothelium HGNC:1662, HGNC:1662, HGNC:1663, HGNC:1663, HGNC:8823, HGNC:8823 NoDOI +UBERON:0003329 submucosa of anal canal submucosa CL:1000412 endothelial cell of arteriole arteriole endothelium HGNC:1662, HGNC:1662, HGNC:1663, HGNC:1663, HGNC:8823, HGNC:8823 NoDOI +UBERON:0002439 myenteric nerve plexus myenteric plexus of Auerbach CL:1000412 endothelial cell of arteriole arteriole endothelium HGNC:1662, HGNC:1662, HGNC:1663, HGNC:1663, HGNC:8823, HGNC:8823 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 +UBERON:0000055 vessel vessel CL:1000412 endothelial cell of arteriole arteriole endothelial cell HGNC:1662, HGNC:1662, HGNC:1663, HGNC:1663, HGNC:8823, HGNC:8823 NoDOI +UBERON:0006134 nerve fiber vessel CL:1000412 endothelial cell of arteriole arteriole endothelial cell HGNC:1662, HGNC:1662, HGNC:1663, HGNC:1663, HGNC:8823, HGNC:8823 NoDOI +UBERON:0012375 subserosa subserosa CL:1000412 endothelial cell of arteriole arteriole endothelium HGNC:1662, HGNC:1662, HGNC:1663, HGNC:1663, HGNC:8823, HGNC:8823 NoDOI +UBERON:0004927 submucosa of cecum submucosa CL:1000412 endothelial cell of arteriole arteriole endothelium HGNC:1662, HGNC:1662, HGNC:1663, HGNC:1663, HGNC:8823, HGNC:8823 NoDOI +UBERON:0012399 large intestine smooth muscle longitudinal layer longitudinal muscle layer CL:1000412 endothelial cell of arteriole arteriole endothelium HGNC:1662, HGNC:1662, HGNC:1663, HGNC:1663, HGNC:8823, HGNC:8823 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 +UBERON:0012375 subserosa subserosa CL:1000414 endothelial cell of venule venule endothelium HGNC:1662, HGNC:1662, HGNC:1663, HGNC:1663, HGNC:8823, HGNC:8823 NoDOI +UBERON:0012399 large intestine smooth muscle longitudinal layer longitudinal muscle layer CL:1000414 endothelial cell of venule venule endothelium HGNC:1662, HGNC:1662, HGNC:1663, HGNC:1663, HGNC:8823, HGNC:8823 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 +UBERON:0003331 submucosa of colon submucosa CL:1000414 endothelial cell of venule venule endothelium HGNC:1662, HGNC:1662, HGNC:1663, HGNC:1663, HGNC:8823, HGNC:8823 NoDOI +UBERON:0005742 adventitia adventitia CL:1000414 endothelial cell of venule venule endothelium HGNC:1662, HGNC:1662, HGNC:1663, HGNC:1663, HGNC:8823, HGNC:8823 NoDOI +UBERON:0003329 submucosa of anal canal submucosa CL:1000414 endothelial cell of venule venule endothelium HGNC:1662, HGNC:1662, HGNC:1663, HGNC:1663, HGNC:8823, HGNC:8823 NoDOI +UBERON:0012398 large intestine smooth muscle circular layer circular muscle layer CL:1000414 endothelial cell of venule venule endothelium HGNC:1662, HGNC:1662, HGNC:1663, HGNC:1663, HGNC:8823, HGNC:8823 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 +UBERON:0004927 submucosa of cecum submucosa CL:1000414 endothelial cell of venule venule endothelium HGNC:1662, HGNC:1662, HGNC:1663, HGNC:1663, HGNC:8823, HGNC:8823 NoDOI +UBERON:0002439 myenteric nerve plexus myenteric plexus of Auerbach CL:1000414 endothelial cell of venule venule endothelium HGNC:1662, HGNC:1662, HGNC:1663, HGNC:1663, HGNC:8823, HGNC:8823 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 +UBERON:0000423 eccrine sweat gland eccrine sweat gland CL:1000417 myoepithelial cell of sweat gland myoepithelial HGNC:130, HGNC:130 NoDOI +UBERON:0008974 apocrine gland apocrine gland CL:1000417 myoepithelial cell of sweat gland myoepithelial HGNC:130, HGNC:130 NoDOI +UBERON:0003335 serosa of colon serosa CL:1000457 mesothelial cell of visceral peritoneum mesothelial cell HGNC:1435, HGNC:1435, HGNC:6430, HGNC:6430, HGNC:6446, HGNC:6446 NoDOI diff --git a/logs/ct_loc_markers/Liver_report.tsv b/logs/ct_loc_markers/Liver_report.tsv new file mode 100644 index 000000000..ac3392478 --- /dev/null +++ b/logs/ct_loc_markers/Liver_report.tsv @@ -0,0 +1,27 @@ +Terminal AS/ID Terminal AS/label Terminal AS/user_label Terminal CT/ID Terminal CT/label Terminal CT/user_label Markers References +UBERON:0004058 biliary ductule bile duct/ule CL:0000075 columnar/cuboidal epithelial cell columnar cell ( larger cholangiocytes are more columnar) has ciliae HGNC:1884 DOI:10.3748/wjg.v12.i22.3523 +UBERON:0001281 hepatic sinusoid hepatic sinusoid CL:0000091 Kupffer Cell Kupffer cell HGNC:1693, HGNC:1693 DOI:10.1016/j.jhep.2010.04.037 +UBERON:0005452 hepatic cord hepatic plate CL:0000182 hepatocyte hepatocyte HGNC:2625, HGNC:42, HGNC:7154 DOI:10.1097/00000478-200110000-00011|DOI:10.1007/s00424-006-0152-8 +UBERON:0004058 biliary ductule bile duct/ule CL:0000241 stratified cuboidal epithelial cell cuboidal cell (Small cholangiocytes are cuboidal) HGNC:6436, HGNC:6436, HGNC:6445, HGNC:6445 DOI:10.1111/j.1365-2559.2009.03391.x +UBERON:0001279 portal triad portal triad/tract CL:0000526 afferent neuron cell neuron cell HGNC:12716, HGNC:20772 DOI:10.3748/wjg.v12.i22.3523|PMID:21262470 +UBERON:0004647 liver lobule hepatic Lobule CL:0000623 Natural killer Cell NK HGNC:11599, HGNC:16647, HGNC:1694, HGNC:3372, HGNC:6134, HGNC:7656 DOI:10.3389/fimmu.2019.01502|PMID:28289707PMID:27798170 +UBERON:0004647 liver lobule hepatic Lobule CL:0000624 CD4 positive alpha beta CD4+T cell HGNC:12029, HGNC:1678 +UBERON:0006729 liver perisinusoidal space Disse's space CL:0000632 hepatic stellate cell quiescent hepatic stellate cell HGNC:2770, HGNC:2770, HGNC:4235, HGNC:4235, HGNC:8804, HGNC:8804 DOI:10.1038/nm.3282|DOI:10.1136/gut.2005.078865|DOI:10.1002/hep.1840040425|https://www|ncbi|nlm|nih|gov/pmc/articles/PMC3855865/ +UBERON:0004647 liver lobule hepatic Lobule CL:0000784 plasmacytoid dendritic cell plasmacytoid Dendritic cell HGNC:6152 DOI:10.1111/imm.12888|PMID:29313948 +UBERON:0004647 liver lobule hepatic Lobule CL:0000798 gamma delta T cell gamma delta T cell HGNC:11922, HGNC:16647, HGNC:4540, HGNC:9666 +UBERON:0004647 liver lobule hepatic Lobule CL:0000921 Type I NK T cell iNKT HGNC:12046, HGNC:12053, HGNC:12104, HGNC:1637, HGNC:16647 +UBERON:0004647 liver lobule hepatic Lobule CL:0000990 conventional dendritic cell Conventional DC 1 HGNC:11784 DOI:10.1111/imm.12888|PMID:29313948 +UBERON:0004647 liver lobule hepatic Lobule CL:0001056 human Dendritic cell conventional Dendritic cell HGNC:1697, HGNC:2433, HGNC:3336, HGNC:3613, HGNC:3765, HGNC:6152 DOI:10.1111/imm.12888|PMID:29313948 +UBERON:0004647 liver lobule hepatic Lobule CL:0001203 CD8 positiver alpha beta memory T cell CD45RO + CD8+ Liver-Resident Memory T cell HGNC:10720, HGNC:1608, HGNC:16647, HGNC:3165, HGNC:4540, HGNC:6347 +UBERON:0001282 intralobular bile duct Canals of Hering CL:0002196 Hepatic oval stem cell hepatic oval cell HGNC:11801, HGNC:6342 |DOI:10.1136/gut.2007.143321|DOI:10.1053/gast.2001.21175 +UBERON:0001282 intralobular bile duct Canals of Hering CL:0002196 Hepatic oval stem cell hepatic progenitor cell HGNC:11204, HGNC:11529, HGNC:4504, HGNC:8148, HGNC:9454 DOI:10.1038/nature11826|DOI:10.1634/stemcells.2007-0176|DOI:10.1038/ng.722|DOI:10.1053/j.gastro.2012.08.024 +UBERON:0004647 liver lobule hepatic Lobule CL:0002399 CD1c+ myeloid dendritic cell Conventional DC 2 HGNC:1636 DOI:10.1111/imm.12888|PMID:29313948 +UBERON:0006841 central vein of liver central vein CL:0002543 vein endothelial cell endothelial cell HGNC:1662, HGNC:1662, HGNC:8823, HGNC:8823 DOI:10.1038/srep44356 +UBERON:0002017 portal vein portal vein CL:0002543 vein endothelial cell endothelial cell HGNC:10718, HGNC:12726, HGNC:13635, HGNC:1662 DOI:10.1038/srep44356 +UBERON:0001193 hepatic artery hepatic artery CL:0019018 blood vessel smooth muscle cell smooth muscle cell HGNC:130, HGNC:130 +UBERON:0005452 hepatic cord hepatic plate CL:0019026 periportal region hepatocyte periportal hepatocyte HGNC:2611, HGNC:2611, HGNC:4806, HGNC:4806 DOI:10.1053/j.gastro.2009.02.063|DOI:10.1038/s42255-019-0109-9 +UBERON:0005452 hepatic cord hepatic plate CL:0019028 midzonal region hepatocyte mid zone hepatocyte HGNC:2611, HGNC:2637, HGNC:4806 +UBERON:0005452 hepatic cord hepatic plate CL:0019029 centrilobular region hepatocyte pericentral hepatocyte HGNC:2637, HGNC:2637, HGNC:4341, HGNC:4341 DOI:10.1053/j.gastro.2009.02.063|DOI:10.1038/ncb3337|DOI:10.1038/nature14863 +UBERON:0001281 hepatic sinusoid hepatic sinusoid CL:1000398 endothelial cell of hepatic sinusoid liver sinusoid endothelial cell HGNC:1662, HGNC:3349, HGNC:3349, HGNC:8823, HGNC:8823 DOI:10.3748/wjg.v12.i34.5429|https://www|ncbi|nlm|nih|gov/pmc/articles/PMC4088223/ +UBERON:0001193 hepatic artery hepatic artery CL:1000413 endothelial cell of artery endothelial cell HGNC:1662, HGNC:1662, HGNC:8823, HGNC:8823 DOI:10.1038/srep44356 +UBERON:0004647 liver lobule hepatic Lobule CL:2000054 hepatic Pit cell Pit cell HGNC:11599, HGNC:3372, HGNC:6134 diff --git a/logs/ct_loc_markers/Lung_report.tsv b/logs/ct_loc_markers/Lung_report.tsv new file mode 100644 index 000000000..978765a4a --- /dev/null +++ b/logs/ct_loc_markers/Lung_report.tsv @@ -0,0 +1,90 @@ +Terminal AS/ID Terminal AS/label Terminal AS/user_label Terminal CT/ID Terminal CT/label Terminal CT/user_label Markers References +UBERON:0002051 epithelium of bronchiole epithelium of bronchiole CL:0000158 club cell club cell HGNC:11529, HGNC:12523, HGNC:12523, HGNC:1748, HGNC:18391, HGNC:18391, HGNC:20657, HGNC:2632, HGNC:3318, HGNC:4027 +UBERON:0001955 epithelium of respiratory bronchiole epithelium of respiratory bronchiole CL:0000158 club cell club cell HGNC:11529, HGNC:12523, HGNC:12523, HGNC:1748, HGNC:18391, HGNC:18391, HGNC:20657, HGNC:2632, HGNC:3318, HGNC:4027 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 +UBERON:0002341 epithelium of segmental bronchus segmental bronchial epithelium CL:0000158 club cell club cell HGNC:11529, HGNC:12523, HGNC:12523, HGNC:1748, HGNC:18391, HGNC:18391, HGNC:20657, HGNC:2632, HGNC:3318, HGNC:4027 +UBERON:0001958 terminal bronchiole epithelium terminal bronchiole epithelium CL:0000158 club cell club cell HGNC:11529, HGNC:12523, HGNC:12523, HGNC:1748, HGNC:18391, HGNC:18391, HGNC:20657, HGNC:2632, HGNC:3318, HGNC:4027 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 +UBERON:0002405 immune system immune system of respiratory tract CL:0000236 B cell B cell HGNC:1633, HGNC:1633, HGNC:1643, HGNC:1686, HGNC:1698, HGNC:18233, HGNC:18233, HGNC:2252, HGNC:7315, HGNC:7315, HGNC:7315, HGNC:9666, HGNC:9666 +UBERON:0002405 immune system immune system of respiratory tract CL:0000484 connective tissue type mast cell connective tissue type mast cell HGNC:10935, HGNC:12019, HGNC:12019, HGNC:2097, HGNC:2097, HGNC:2298, HGNC:2298, HGNC:6342, HGNC:6342, HGNC:7316, HGNC:9666, HGNC:9995 +UBERON:0002405 immune system immune system of respiratory tract CL:0000485 mucosal type mast cell tissue resident mucosal type mast cell HGNC:10935, HGNC:12019, HGNC:12019, HGNC:14120, HGNC:6342, HGNC:6342, HGNC:7316, HGNC:9666, HGNC:9995 +UBERON:0002405 immune system immune system of respiratory tract CL:0000583 alveolar macrophage alveolar macrophage HGNC:11127, HGNC:11127, HGNC:1631, HGNC:1686, HGNC:1693, HGNC:2252, HGNC:2605, HGNC:3559, HGNC:6895, HGNC:6895, HGNC:7228, HGNC:9236, HGNC:9666, HGNC:9666, HGNC:9666 +UBERON:0002405 immune system immune system of respiratory tract CL:0000623 natural killer cell natural killer cell HGNC:11599, HGNC:1686, HGNC:2252, HGNC:3372, HGNC:6378, HGNC:6731, HGNC:7656, HGNC:7830, HGNC:9666, HGNC:9666 +UBERON:0002405 immune system immune system of respiratory tract CL:0000767 basophil basophil HGNC:14558, HGNC:1604, HGNC:1686, HGNC:2252, HGNC:28344, HGNC:3358, HGNC:3609, HGNC:3611, HGNC:6012, HGNC:9666, HGNC:9666 +UBERON:0002405 immune system immune system of respiratory tract CL:0000775 neutrophil neutrophil HGNC:14558, HGNC:1603, HGNC:1686, HGNC:2252, HGNC:2439, HGNC:28344, HGNC:3611, HGNC:3620, HGNC:3620, HGNC:9666, HGNC:9666 +UBERON:0002405 immune system immune system of respiratory tract CL:0000784 plasmacytoid dendritic cell plasmacytoid dendritic cell HGNC:13258, HGNC:14558, HGNC:1686, HGNC:2252, HGNC:28344, HGNC:3611, HGNC:4540, HGNC:4948, HGNC:6012, HGNC:8004, HGNC:9666, HGNC:9666 +UBERON:0002405 immune system immune system of respiratory tract CL:0000786 plasma cell plasma cell HGNC:10658, HGNC:14236, HGNC:1633, HGNC:1667, HGNC:1686, HGNC:18233, HGNC:2252, HGNC:30125, HGNC:7315, HGNC:7315, HGNC:9666, HGNC:9666 +UBERON:0002405 immune system immune system of respiratory tract CL:0000814 mature NK T cell mature NK T cell HGNC:1674, HGNC:1674, HGNC:1674, HGNC:1686, HGNC:2252, HGNC:6024, HGNC:7656, HGNC:7656, HGNC:9666, HGNC:9666 +UBERON:0002405 immune system immune system of respiratory tract CL:0000815 regulatory T cell regulatory T cell HGNC:11918, HGNC:11918, HGNC:1674, HGNC:1674, HGNC:1686, HGNC:19364, HGNC:2252, HGNC:23527, HGNC:2505, HGNC:2505, HGNC:6024, HGNC:6106, HGNC:6106, HGNC:9666, HGNC:9666 +UBERON:0002405 immune system immune system of respiratory tract CL:0000860 classical monocyte classical inflammatory monocyte HGNC:10499, HGNC:14558, HGNC:1603, HGNC:1628, HGNC:1686, HGNC:2252, HGNC:2464, HGNC:28344, HGNC:3611, HGNC:3623, HGNC:9666, HGNC:9666 +UBERON:0002405 immune system immune system of respiratory tract CL:0000875 non-classical monocyte non-classical or patrolling monocyte HGNC:13378, HGNC:14261, HGNC:14558, HGNC:1686, HGNC:2252, HGNC:2433, HGNC:28344, HGNC:3611, HGNC:9666, HGNC:9666 +UBERON:0002405 immune system immune system of respiratory tract CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell naive thymus-derived CD4-positive, alpha-beta T cell HGNC:1608, HGNC:1608, HGNC:1674, HGNC:1674, HGNC:1678, HGNC:1686, HGNC:2252, HGNC:6024, HGNC:6024, HGNC:6551, HGNC:9666, HGNC:9666 +UBERON:0002405 immune system immune system of respiratory tract CL:0000900 naive thymus-derived CD8-positive, alpha-beta T cell naive thymus-derived CD8-positive, alpha-beta T cell HGNC:1608, HGNC:1608, HGNC:1674, HGNC:1674, HGNC:1686, HGNC:1706, HGNC:1707, HGNC:1707, HGNC:17493, HGNC:2252, HGNC:6024, HGNC:6024, HGNC:7553, HGNC:9666, HGNC:9666 +UBERON:0002405 immune system immune system of respiratory tract CL:0000905 effector memory CD4-positive, alpha-beta T cell effector memory CD4-positive, alpha-beta T cell HGNC:1674, HGNC:1674, HGNC:1674, HGNC:1678, HGNC:1678, HGNC:1686, HGNC:2252, HGNC:6024, HGNC:9666, HGNC:9666 +UBERON:0002405 immune system immune system of respiratory tract CL:0000913 effector memory CD8-positive, alpha-beta T cell effector memory CD8-positive, alpha-beta T cell HGNC:1673, HGNC:1674, HGNC:1674, HGNC:1674, HGNC:1686, HGNC:1706, HGNC:1706, HGNC:1707, HGNC:2252, HGNC:9666, HGNC:9666 +UBERON:0002405 immune system immune system of respiratory tract CL:0000938 CD16-negative, CD56-bright natural killer cell, human NK CD56bright HGNC:10645, HGNC:10646, HGNC:1686, HGNC:2252, HGNC:24045, HGNC:6024, HGNC:7656, HGNC:7656, HGNC:9666, HGNC:9666 +UBERON:0002405 immune system immune system of respiratory tract CL:0000940 mucosal invariant T cell mucosal invariant T cell HGNC:1674, HGNC:1674, HGNC:1686, HGNC:2252, HGNC:6024, HGNC:6373, HGNC:6380, HGNC:9360, HGNC:9666, HGNC:9666 +UBERON:0008870 pulmonary alveolar parenchyma pulmonary alveolar parenchyma CL:0002062 type I pneumocyte alveolar type I cell HGNC:10573, HGNC:10724, HGNC:11529, HGNC:13517, HGNC:1748, HGNC:18386, HGNC:19364, HGNC:20862, HGNC:24961, HGNC:24961, HGNC:27287, HGNC:320, HGNC:320, HGNC:3318, HGNC:4027, HGNC:637, HGNC:6412 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 +UBERON:0002299 alveolus of lung alveolus of lung on respiratory bronchiole CL:0002062 type I pneumocyte alveolar type I cell HGNC:10573, HGNC:10724, HGNC:11529, HGNC:13517, HGNC:1748, HGNC:18386, HGNC:19364, HGNC:20862, HGNC:24961, HGNC:24961, HGNC:27287, HGNC:320, HGNC:320, HGNC:3318, HGNC:4027, HGNC:637, HGNC:6412 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 +UBERON:0002173 pulmonary alveolar duct pulmonary alveolar duct CL:0002062 type I pneumocyte alveolar type I cell HGNC:10573, HGNC:10724, HGNC:11529, HGNC:13517, HGNC:1748, HGNC:18386, HGNC:19364, HGNC:20862, HGNC:24961, HGNC:24961, HGNC:27287, HGNC:320, HGNC:320, HGNC:3318, HGNC:4027, HGNC:637, HGNC:6412 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 +UBERON:0008870 pulmonary alveolar parenchyma pulmonary alveolar parenchyma CL:0002063 type II pneumocyte alveolar type II cell HGNC:1067, HGNC:10799, HGNC:10802, HGNC:11529, HGNC:14582, HGNC:1748, HGNC:18386, HGNC:20862, HGNC:24961, HGNC:25897, HGNC:33, HGNC:33, HGNC:3318, HGNC:4027, HGNC:6412 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 +UBERON:0002299 alveolus of lung alveolus of lung on respiratory bronchiole CL:0002063 type II pneumocyte alveolar type II cell HGNC:1067, HGNC:10799, HGNC:10802, HGNC:11529, HGNC:14582, HGNC:1748, HGNC:18386, HGNC:20862, HGNC:24961, HGNC:25897, HGNC:33, HGNC:33, HGNC:3318, HGNC:4027, HGNC:6412 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 +UBERON:0002173 pulmonary alveolar duct pulmonary alveolar duct CL:0002063 type II pneumocyte alveolar type II cell HGNC:1067, HGNC:10799, HGNC:10802, HGNC:11529, HGNC:14582, HGNC:1748, HGNC:18386, HGNC:20862, HGNC:24961, HGNC:25897, HGNC:33, HGNC:33, HGNC:3318, HGNC:4027, HGNC:6412 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 +UBERON:0002341 epithelium of segmental bronchus segmental bronchial epithelium CL:0002208 brush cell of bronchus tuft cell HGNC:11529, HGNC:14323, HGNC:14323, HGNC:1748, HGNC:19864, HGNC:19864, HGNC:20657, HGNC:2700, HGNC:2700, HGNC:3318, HGNC:4027, HGNC:739 +UBERON:0002341 epithelium of segmental bronchus segmental bronchial epithelium CL:0002329 basal epithelial cell of tracheobronchial tree basal epithelial cell of tracheobronchial tree HGNC:11529, HGNC:12338, HGNC:15979, HGNC:15979, HGNC:1748, HGNC:20657, HGNC:3318, HGNC:4027, HGNC:6442, HGNC:6442, HGNC:7809, HGNC:7809 +UBERON:0002339 epithelium of lobar bronchus lobar bronchial epithelium CL:0002329 basal epithelial cell of tracheobronchial tree basal epithelial cell of tracheobronchial tree HGNC:11529, HGNC:12338, HGNC:15979, HGNC:15979, HGNC:1748, HGNC:20657, HGNC:3318, HGNC:4027, HGNC:6442, HGNC:6442, HGNC:7809 +UBERON:0002339 epithelium of lobar bronchus lobar bronchial epithelium CL:0002332 ciliated cell of the bronchus ciliated cell of the bronchus HGNC:11529, HGNC:12371, HGNC:15467, HGNC:1748, HGNC:20657, HGNC:20771, HGNC:26308, HGNC:3318, HGNC:34527, HGNC:3816, HGNC:3816, HGNC:4027 +UBERON:0002341 epithelium of segmental bronchus segmental bronchial epithelium CL:0002332 ciliated cell of the bronchus ciliated cell of the bronchus HGNC:11529, HGNC:12371, HGNC:15467, HGNC:1748, HGNC:20657, HGNC:20771, HGNC:26308, HGNC:3318, HGNC:34527, HGNC:3816, HGNC:3816, HGNC:4027 +UBERON:0002405 immune system immune system of respiratory tract CL:0002394 CD141-positive myeloid dendritic cell cDC1 CD141-positive myeloid dendritic cell HGNC:11784, HGNC:11784, HGNC:14558, HGNC:1625, HGNC:1686, HGNC:2252, HGNC:26705, HGNC:26705, HGNC:28344, HGNC:3611, HGNC:3765, HGNC:4948, HGNC:5951, HGNC:9666, HGNC:9666 +UBERON:0002405 immune system immune system of respiratory tract CL:0002399 CD1c-positive myeloid dendritic cell cDC2 CD1c-positive myeloid dendritic cell HGNC:14558, HGNC:1636, HGNC:1636, HGNC:1686, HGNC:16916, HGNC:2252, HGNC:28344, HGNC:3611, HGNC:3618, HGNC:4948, HGNC:9662, HGNC:9662, HGNC:9666, HGNC:9666 +UBERON:0002012 pulmonary artery pulmonary artery CL:0002557 fibroblast of pulmonary artery fibroblast of pulmonary artery HGNC:2198, HGNC:7166 +UBERON:0012416 respiratory system arterial smooth muscle arterial system smooth muscle CL:0002591 smooth muscle cell of the pulmonary artery smooth muscle cell of the pulmonary artery HGNC:2198, HGNC:2705, HGNC:4881, HGNC:7035, HGNC:7883, HGNC:8033, HGNC:9080 +UBERON:0004242 bronchus smooth muscle bronchial smooth muscle CL:0002598 bronchial smooth muscle cell bronchial smooth muscle cell HGNC:11553, HGNC:130, HGNC:130, HGNC:16122, HGNC:19719, HGNC:19719, HGNC:2155, HGNC:2155, HGNC:2198, HGNC:2705, HGNC:2770, HGNC:7035, HGNC:7569, HGNC:9080 +UBERON:0004849 respiratory system venous endothelium respiratory system venous endothelium CL:0002619 adult endothelial progenitor cell adult endothelial progenitor cell HGNC:339, HGNC:339, HGNC:6342, HGNC:6342 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 +UBERON:0003529 respiratory system lymphatic vessel endothelium respiratory system lymphatic vessel endothelium CL:0009086 endothelial cell of respiratory system lymphatic vessel endothelial cell of respiratory system lymphatic vessel HGNC:10620, HGNC:14687, HGNC:14687, HGNC:2047, HGNC:35454, HGNC:7178, HGNC:8823, HGNC:9459, HGNC:9459 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 +UBERON:0008870 pulmonary alveolar parenchyma pulmonary alveolar parenchyma CL:0009089 lung pericyte lung pericyte HGNC:12338, HGNC:12338, HGNC:16232, HGNC:2198, HGNC:24318, HGNC:2466, HGNC:2705, HGNC:6494, HGNC:8804, HGNC:8804 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 +UBERON:0002173 pulmonary alveolar duct pulmonary alveolar duct CL:0009089 lung pericyte lung pericyte HGNC:12338, HGNC:12338, HGNC:16232, HGNC:2198, HGNC:24318, HGNC:2466, HGNC:2705, HGNC:6494, HGNC:8804, HGNC:8804 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 +UBERON:0002299 alveolus of lung alveolus of lung on respiratory bronchiole CL:0009089 lung pericyte lung pericyte HGNC:12338, HGNC:12338, HGNC:16232, HGNC:2198, HGNC:24318, HGNC:2466, HGNC:2705, HGNC:6494, HGNC:8804, HGNC:8804 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 +UBERON:0002009 pulmonary nerve plexus pulmonary nerve plexus CL:0011103 sympathetic neuron sympathetic neuron HGNC:20772 +UBERON:0002341 epithelium of segmental bronchus segmental bronchial epithelium CL:0017000 pulmonary ionocyte pulmonary ionocyte HGNC:11529, HGNC:16512, HGNC:1748, HGNC:1884, HGNC:2027, HGNC:20657, HGNC:3318, HGNC:3815, HGNC:4027, HGNC:740 +UBERON:0002339 epithelium of lobar bronchus lobar bronchial epithelium CL:0017000 pulmonary ionocyte pulmonary ionocyte HGNC:11529, HGNC:16512, HGNC:1748, HGNC:1884, HGNC:2027, HGNC:20657, HGNC:3318, HGNC:3815, HGNC:4027, HGNC:740 +UBERON:0001956 cartilage of bronchus cartilage of bronchus CL:0019002 tracheobronchial chondrocyte tracheobronchial chondrocyte HGNC:2198, HGNC:2200, HGNC:2200, HGNC:2705, HGNC:7035 +UBERON:0002341 epithelium of segmental bronchus segmental bronchial epithelium CL:0019003 tracheobronchial goblet cell tracheobronchial goblet cell HGNC:11529, HGNC:11756, HGNC:16438, HGNC:17257, HGNC:1748, HGNC:20657, HGNC:328, HGNC:328, HGNC:3318, HGNC:4027, HGNC:7515, HGNC:7515, HGNC:7516, HGNC:8659 +UBERON:0002405 immune system immune system of respiratory tract CL:0019015 lung parenchyma resident eosinophil lung parenchyma resident eosinophil HGNC:10046, HGNC:1602, HGNC:1604, HGNC:1686, HGNC:1709, HGNC:2252, HGNC:3423, HGNC:9666, HGNC:9666 +UBERON:0012416 respiratory system arterial smooth muscle arterial system smooth muscle CL:0019018 blood vessel smooth muscle cell blood vessel smooth muscle cell HGNC:2198, HGNC:2705, HGNC:4881, HGNC:7035, HGNC:7883, HGNC:8033, HGNC:9080 +UBERON:0012418 respiratory system venous smooth muscle venous system smooth muscle CL:0019018 blood vessel smooth muscle cell blood vessel smooth muscle cell HGNC:2198, HGNC:2705, HGNC:4881, HGNC:7035, HGNC:7883, HGNC:8033, HGNC:9080 +UBERON:0004884 lobar bronchus mesenchyme bronchial mesenchyme CL:0019019 tracheobronchial smooth muscle cell tracheobronchial smooth muscle HGNC:11553, HGNC:130, HGNC:130, HGNC:16122, HGNC:19719, HGNC:19719, HGNC:2155, HGNC:2155, HGNC:2198, HGNC:2705, HGNC:2770, HGNC:7035, HGNC:7569, HGNC:9080 +UBERON:0002341 epithelium of segmental bronchus segmental bronchial epithelium CL:1000223 lung neuroendocrine cell lung neuroendocrine cell HGNC:11529, HGNC:1437, HGNC:1437, HGNC:1748, HGNC:1757, HGNC:1929, HGNC:3318, HGNC:4027, HGNC:4605, HGNC:4605, HGNC:738, HGNC:8008 +UBERON:0001955 epithelium of respiratory bronchiole epithelium of respiratory bronchiole CL:1000271 lung ciliated cell lung ciliated cell HGNC:11529, HGNC:12371, HGNC:15467, HGNC:1748, HGNC:20657, HGNC:20771, HGNC:26308, HGNC:3318, HGNC:34527, HGNC:3816, HGNC:3816, HGNC:4027 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 +UBERON:0001958 terminal bronchiole epithelium terminal bronchiole epithelium CL:1000271 lung ciliated cell lung ciliated cell HGNC:11529, HGNC:12371, HGNC:15467, HGNC:1748, HGNC:20657, HGNC:20771, HGNC:26308, HGNC:3318, HGNC:34527, HGNC:3816, HGNC:3816, HGNC:4027 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 +UBERON:0002051 epithelium of bronchiole epithelium of bronchiole CL:1000271 lung ciliated cell lung ciliated cell HGNC:11529, HGNC:12371, HGNC:15467, HGNC:1748, HGNC:20657, HGNC:20771, HGNC:26308, HGNC:3318, HGNC:34527, HGNC:3816, HGNC:3816, HGNC:4027 +UBERON:0001958 terminal bronchiole epithelium terminal bronchiole epithelium CL:1000350 basal cell of epithelium of terminal bronchiole basal cell of epithelium of terminal bronchiole HGNC:11529, HGNC:12338, HGNC:15979, HGNC:15979, HGNC:1748, HGNC:20657, HGNC:3318, HGNC:4027, HGNC:6442, HGNC:6442, HGNC:7809, HGNC:7809 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 +UBERON:0001955 epithelium of respiratory bronchiole epithelium of respiratory bronchiole CL:1000351 basal cell of epithelium of respiratory bronchiole basal cell of epithelium of respiratory bronchiole HGNC:11200, HGNC:11529, HGNC:12523, HGNC:12523, HGNC:1748, HGNC:18391, HGNC:18391, HGNC:20657, HGNC:3318, HGNC:4027, HGNC:6359 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 +UBERON:0002051 epithelium of bronchiole epithelium of bronchiole CL:1000352 basal cell of epithelium of lobular bronchiole basal cell of epithelium of lobular bronchiole HGNC:11529, HGNC:12338, HGNC:15979, HGNC:15979, HGNC:1748, HGNC:20657, HGNC:3318, HGNC:4027, HGNC:6442, HGNC:6442, HGNC:7809, HGNC:7809 +UBERON:0004848 respiratory system arterial endothelium respiratory system arterial endothelium CL:1000413 endothelial cell of artery endothelial cell of artery HGNC:18122, HGNC:19832, HGNC:2047, HGNC:2892, HGNC:3227, HGNC:35454, HGNC:4279, HGNC:4880, HGNC:7884 +UBERON:0002401 visceral pleura visceral pleura CL:1000493 mesothelial cell of visceral pleura mesothelial cell of visceral pleura HGNC:12796, HGNC:12796, HGNC:18259, HGNC:21444, HGNC:2198, HGNC:2705, HGNC:7035 +UBERON:0004848 respiratory system arterial endothelium respiratory system arterial endothelium CL:1001568 pulmonary artery endothelial cell pulmonary artery endothelial cell HGNC:19832, HGNC:2047, HGNC:35454, HGNC:7884 +UBERON:0016405 pulmonary capillary pulmonary capillary CL:4028002 alveolar capillary type 1 endothelial cell CAP1 general capillary gCap HGNC:13635, HGNC:19832, HGNC:2047, HGNC:24945, HGNC:30288, HGNC:339, HGNC:339, HGNC:35454, HGNC:6024, HGNC:6024, HGNC:7884, HGNC:8823 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 +UBERON:0016405 pulmonary capillary pulmonary capillary CL:4028003 alveolar capillary type 2 endothelial cell CAP2 aerocyte capillary aCap HGNC:1375, HGNC:1375, HGNC:16665, HGNC:16665, HGNC:19832, HGNC:2047, HGNC:3180, HGNC:3180, HGNC:35454, HGNC:7884, HGNC:8823 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 +UBERON:0008870 pulmonary alveolar parenchyma pulmonary alveolar parenchyma CL:4028004 alveolar type 1 fibroblast cell alveolar type 1 fibroblast cell HGNC:11632, HGNC:12780, HGNC:14674, HGNC:2198, HGNC:2213, HGNC:248, HGNC:2705, HGNC:3600, HGNC:3600, HGNC:3691, HGNC:6724, HGNC:7035 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 +UBERON:0002173 pulmonary alveolar duct pulmonary alveolar duct CL:4028004 alveolar type 1 fibroblast cell alveolar type 1 fibroblast cell HGNC:11632, HGNC:12780, HGNC:14674, HGNC:2198, HGNC:2213, HGNC:248, HGNC:2705, HGNC:3600, HGNC:3600, HGNC:3691, HGNC:6724, HGNC:7035 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 +UBERON:0002299 alveolus of lung alveolus of lung on respiratory bronchiole CL:4028004 alveolar type 1 fibroblast cell alveolar type 1 fibroblast cell HGNC:11632, HGNC:12780, HGNC:14674, HGNC:2198, HGNC:2213, HGNC:248, HGNC:2705, HGNC:3600, HGNC:3600, HGNC:3691, HGNC:6724, HGNC:7035 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 +UBERON:0002173 pulmonary alveolar duct pulmonary alveolar duct CL:4028006 adventitial fibroblast adventitial fibroblast HGNC:17104, HGNC:2198, HGNC:2213, HGNC:2700, HGNC:2705, HGNC:28701, HGNC:29673, HGNC:3600, HGNC:3600, HGNC:6724, HGNC:7035 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 +UBERON:0008870 pulmonary alveolar parenchyma pulmonary alveolar parenchyma CL:4028006 adventitial fibroblast adventitial fibroblast HGNC:17104, HGNC:2198, HGNC:2213, HGNC:2700, HGNC:2705, HGNC:28701, HGNC:29673, HGNC:3600, HGNC:3600, HGNC:6724, HGNC:7035 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 +UBERON:0002299 alveolus of lung alveolus of lung on respiratory bronchiole CL:4028006 adventitial fibroblast adventitial fibroblast HGNC:17104, HGNC:2198, HGNC:2213, HGNC:2700, HGNC:2705, HGNC:28701, HGNC:29673, HGNC:3600, HGNC:3600, HGNC:6724, HGNC:7035 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 +UBERON:8600012 submucosal gland acinus submucosal gland acinus CL:4033003 myoepithelial cell of bronchus submucosal gland myoepithelial cell of bronchus submucosal gland HGNC:11529, HGNC:130, HGNC:130, HGNC:15979, HGNC:1748, HGNC:2155, HGNC:3318, HGNC:4027, HGNC:6416, HGNC:6442, HGNC:7569 +UBERON:8600012 submucosal gland acinus submucosal gland acinus CL:4033005 serous secreting cell of bronchus submucosal gland serous secreting cell of bronchus submucosal gland HGNC:11529, HGNC:1748, HGNC:20657, HGNC:3318, HGNC:4027, HGNC:6678, HGNC:6720, HGNC:6720, HGNC:6740, HGNC:6740, HGNC:8968 +UBERON:0002339 epithelium of lobar bronchus lobar bronchial epithelium CL:4033007 brush cell of epithelium of lobar bronchus tuft cell HGNC:11529, HGNC:14323, HGNC:14323, HGNC:1748, HGNC:19864, HGNC:19864, HGNC:20657, HGNC:2700, HGNC:2700, HGNC:3318, HGNC:4027, HGNC:739 +UBERON:0004849 respiratory system venous endothelium respiratory system venous endothelium CL:4033008 vein endothelial cell of respiratory system vein endothelial cell of respiratory system HGNC:13635, HGNC:19832, HGNC:2047, HGNC:35454, HGNC:4035, HGNC:7884 +UBERON:0004849 respiratory system venous endothelium respiratory system venous endothelium CL:4033008 vein endothelial cell of respiratory system vein endothelial cell of respiratory system HGNC:12726, HGNC:16041, HGNC:19832, HGNC:2047, HGNC:30552, HGNC:35454, HGNC:4035, HGNC:4035, HGNC:7884, HGNC:7976, HGNC:8823 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 +UBERON:0004849 respiratory system venous endothelium respiratory system venous endothelium CL:4033008 vein endothelial cell of respiratory system vein endothelial cell of respiratory system HGNC:19832, HGNC:2047, HGNC:35454, HGNC:7178, HGNC:7884 +UBERON:0002339 epithelium of lobar bronchus lobar bronchial epithelium CL:4033009 goblet cell of epithelium of lobar bronchus goblet cell of epithelium of lobar bronchus HGNC:11529, HGNC:11756, HGNC:16438, HGNC:17257, HGNC:1748, HGNC:20657, HGNC:328, HGNC:328, HGNC:3318, HGNC:4027, HGNC:7515, HGNC:7515, HGNC:7516, HGNC:8659 +UBERON:0002339 epithelium of lobar bronchus lobar bronchial epithelium CL:4033010 neuroendocrine cell of epithelium of lobar bronchus neuroendocrine cell of epithelium of lobar bronchus HGNC:11529, HGNC:1437, HGNC:1437, HGNC:1748, HGNC:1757, HGNC:1929, HGNC:3318, HGNC:4027, HGNC:4605, HGNC:4605, HGNC:738, HGNC:8008 +UBERON:0000114 lung connective tissue lung connective tissue CL:4033016 secondary crest myofibroblast secondary crest myofibroblast HGNC:130, HGNC:130, HGNC:14342, HGNC:144, HGNC:2198, HGNC:2705, HGNC:6715, HGNC:7035, HGNC:7569, HGNC:8804 +UBERON:0004517 smooth muscle tissue of respiratory bronchiole smooth muscle tissue of respiratory bronchiole CL:4033017 bronchiolar smooth muscle cell bronchiolar smooth muscle cell HGNC:11553, HGNC:11553, HGNC:130, HGNC:130, HGNC:144, HGNC:19719, HGNC:19719, HGNC:2155, HGNC:2155, HGNC:2198, HGNC:2705, HGNC:2770, HGNC:7035, HGNC:7569, HGNC:9080 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 +UBERON:0004516 smooth muscle tissue of terminal bronchiole smooth muscle tissue of terminal bronchiole CL:4033017 bronchiolar smooth muscle cell bronchiolar smooth muscle cell HGNC:11553, HGNC:11553, HGNC:130, HGNC:130, HGNC:19719, HGNC:19719, HGNC:2155, HGNC:2155, HGNC:2198, HGNC:2705, HGNC:2770, HGNC:7035, HGNC:7569, HGNC:9080 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 +UBERON:0004515 smooth muscle tissue of bronchiole smooth muscle tissue of bronchiole CL:4033017 bronchiolar smooth muscle cell bronchiolar smooth muscle cell HGNC:11553, HGNC:11553, HGNC:130, HGNC:130, HGNC:19719, HGNC:19719, HGNC:2155, HGNC:2155, HGNC:2198, HGNC:2705, HGNC:2770, HGNC:7035, HGNC:7569, HGNC:9080 +UBERON:0000114 lung connective tissue lung connective tissue CL:4033018 lung megakaryocyte lung megakaryocyte HGNC:4439, HGNC:6138, HGNC:6138, HGNC:6156, HGNC:6156, HGNC:8861, HGNC:8861 +UBERON:8600012 submucosal gland acinus submucosal gland acinus CL:4033022 mucus secreting cell of bronchus submucosal gland mucus secreting cell of bronchus submucosal gland HGNC:11529, HGNC:17257, HGNC:17257, HGNC:1748, HGNC:20657, HGNC:328, HGNC:3318, HGNC:4027, HGNC:7516, HGNC:7516 +UBERON:8600013 submucosal gland collecting duct submucosal gland collecting duct CL:4033023 airway submucosal gland collecting duct epithelial cell airway submucosal gland collecting duct epithelial cell HGNC:11529, HGNC:15749, HGNC:15749, HGNC:1748, HGNC:20657, HGNC:3318, HGNC:4027, HGNC:409, HGNC:7076, HGNC:9867 +UBERON:8600013 submucosal gland collecting duct submucosal gland collecting duct CL:4033024 airway submucosal gland duct basal cell airway submucosal gland duct basal cell HGNC:11529, HGNC:15979, HGNC:15979, HGNC:1748, HGNC:20657, HGNC:3318, HGNC:3800, HGNC:3800, HGNC:4027, HGNC:6416, HGNC:6416, HGNC:6442, HGNC:6442 +UBERON:8600013 submucosal gland collecting duct submucosal gland collecting duct CL:4033024 airway submucosal gland duct basal cell airway submucosal gland duct basal cell HGNC:11529, HGNC:15979, HGNC:15979, HGNC:1748, HGNC:20657, HGNC:3318, HGNC:3800, HGNC:4027, HGNC:6416, HGNC:6416, HGNC:6442, HGNC:6442, HGNC:7809 +UBERON:0001956 cartilage of bronchus cartilage of bronchus CL:4033026 lung perichondrial fibroblast lung perichondrial fibroblast HGNC:11204, HGNC:2198, HGNC:2200, HGNC:2200, HGNC:2213, HGNC:2705, HGNC:3600, HGNC:6724, HGNC:7035 diff --git a/logs/ct_loc_markers/Lymph_node_report.tsv b/logs/ct_loc_markers/Lymph_node_report.tsv new file mode 100644 index 000000000..a7cf6e1aa --- /dev/null +++ b/logs/ct_loc_markers/Lymph_node_report.tsv @@ -0,0 +1,87 @@ +Terminal AS/ID Terminal AS/label Terminal AS/user_label Terminal CT/ID Terminal CT/label Terminal CT/user_label Markers References +UBERON:8410033 lymph node vein Hilar Vein CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1662, HGNC:1689, HGNC:1697, HGNC:17474, HGNC:1764, HGNC:29602, HGNC:30455, HGNC:3349, HGNC:4035, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:5344, HGNC:6895, HGNC:8823, HGNC:9459, HGNC:9707 DOI:10.1007/s00441-008-0706-5|delaPazNG,D'AmorePA|Arterialversusvenousendothelialcells|CellTissueRes|2009Jan;3351:5-16|doi:10|1007/s00441-008-0706-5|Epub2008Oct30|PMID:18972135;PMCID:PMC4105978| +UBERON:8410042 arteriole of lymph node Arteriole CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1662, HGNC:1689, HGNC:1697, HGNC:17474, HGNC:1764, HGNC:29602, HGNC:30455, HGNC:3349, HGNC:4035, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:6895, HGNC:8823, HGNC:9459, HGNC:9707 DOI:10.1371/journal.pone.0094781|DOI:10.1369/jhc.4A6514.2005|NoDOI|ParkSM,AngelCE,McIntoshJD,MansellC,ChenCJ,CebonJ,DunbarPR|Mappingthedistinctivepopulationsoflymphaticendothelialcellsindifferentzonesofhumanlymphnodes|PLoSOne|2014Apr14;94:e94781|doi:10|1371/journal|pone|0094781|Erratumin:PLoSOne|2014;98:e106814|Mansell,ClaudiaM[correctedtoMansell,ClaudiaJ]|PMID:24733110;PMCID:PMC3986404||PusztaszeriMP,SeelentagW,BosmanFT|ImmunohistochemicalexpressionofendothelialmarkersCD31,CD34,vonWillebrandfactor,andFli-1innormalhumantissues|JHistochemCytochem|2006Apr;544:385-95|doi:10|1369/jhc|4A6514|2005|Epub2005Oct18|PMID:16234507| +UBERON:8410041 venule of lymph node Venule CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1662, HGNC:1689, HGNC:1697, HGNC:17474, HGNC:1764, HGNC:29602, HGNC:30455, HGNC:3349, HGNC:4035, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:6895, HGNC:8823, HGNC:9459, HGNC:9707 DOI:10.1371/journal.pone.0094781|DOI:10.1369/jhc.4A6514.2005|NoDOI|ParkSM,AngelCE,McIntoshJD,MansellC,ChenCJ,CebonJ,DunbarPR|Mappingthedistinctivepopulationsoflymphaticendothelialcellsindifferentzonesofhumanlymphnodes|PLoSOne|2014Apr14;94:e94781|doi:10|1371/journal|pone|0094781|Erratumin:PLoSOne|2014;98:e106814|Mansell,ClaudiaM[correctedtoMansell,ClaudiaJ]|PMID:24733110;PMCID:PMC3986404||PusztaszeriMP,SeelentagW,BosmanFT|ImmunohistochemicalexpressionofendothelialmarkersCD31,CD34,vonWillebrandfactor,andFli-1innormalhumantissues|JHistochemCytochem|2006Apr;544:385-95|doi:10|1369/jhc|4A6514|2005|Epub2005Oct18|PMID:16234507| +UBERON:8410036 medullary venule of lymph node Venule CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1662, HGNC:1697, HGNC:17474, HGNC:1764, HGNC:29602, HGNC:30455, HGNC:3349, HGNC:4035, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:6895, HGNC:8823, HGNC:9459, HGNC:9707 DOI:10.1371/journal.pone.0094781|DOI:10.1369/jhc.4A6514.2005|ParkSM,AngelCE,McIntoshJD,MansellC,ChenCJ,CebonJ,DunbarPR|Mappingthedistinctivepopulationsoflymphaticendothelialcellsindifferentzonesofhumanlymphnodes|PLoSOne|2014Apr14;94:e94781|doi:10|1371/journal|pone|0094781|Erratumin:PLoSOne|2014;98:e106814|Mansell,ClaudiaM[correctedtoMansell,ClaudiaJ]|PMID:24733110;PMCID:PMC3986404||PusztaszeriMP,SeelentagW,BosmanFT|ImmunohistochemicalexpressionofendothelialmarkersCD31,CD34,vonWillebrandfactor,andFli-1innormalhumantissues|JHistochemCytochem|2006Apr;544:385-95|doi:10|1369/jhc|4A6514|2005|Epub2005Oct18|PMID:16234507| +UBERON:8410042 arteriole of lymph node Arteriole CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1662, HGNC:1697, HGNC:17474, HGNC:1764, HGNC:29602, HGNC:30455, HGNC:3349, HGNC:4035, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:6895, HGNC:8823, HGNC:9459, HGNC:9707 DOI:10.1371/journal.pone.0094781|DOI:10.1369/jhc.4A6514.2005|ParkSM,AngelCE,McIntoshJD,MansellC,ChenCJ,CebonJ,DunbarPR|Mappingthedistinctivepopulationsoflymphaticendothelialcellsindifferentzonesofhumanlymphnodes|PLoSOne|2014Apr14;94:e94781|doi:10|1371/journal|pone|0094781|Erratumin:PLoSOne|2014;98:e106814|Mansell,ClaudiaM[correctedtoMansell,ClaudiaJ]|PMID:24733110;PMCID:PMC3986404||PusztaszeriMP,SeelentagW,BosmanFT|ImmunohistochemicalexpressionofendothelialmarkersCD31,CD34,vonWillebrandfactor,andFli-1innormalhumantissues|JHistochemCytochem|2006Apr;544:385-95|doi:10|1369/jhc|4A6514|2005|Epub2005Oct18|PMID:16234507| +UBERON:8410035 medullary arteriole of lymph node Arteriole CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1662, HGNC:1697, HGNC:17474, HGNC:1764, HGNC:29602, HGNC:30455, HGNC:3349, HGNC:4035, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:6895, HGNC:8823, HGNC:9459, HGNC:9707 DOI:10.1371/journal.pone.0094781|DOI:10.1369/jhc.4A6514.2005|ParkSM,AngelCE,McIntoshJD,MansellC,ChenCJ,CebonJ,DunbarPR|Mappingthedistinctivepopulationsoflymphaticendothelialcellsindifferentzonesofhumanlymphnodes|PLoSOne|2014Apr14;94:e94781|doi:10|1371/journal|pone|0094781|Erratumin:PLoSOne|2014;98:e106814|Mansell,ClaudiaM[correctedtoMansell,ClaudiaJ]|PMID:24733110;PMCID:PMC3986404||PusztaszeriMP,SeelentagW,BosmanFT|ImmunohistochemicalexpressionofendothelialmarkersCD31,CD34,vonWillebrandfactor,andFli-1innormalhumantissues|JHistochemCytochem|2006Apr;544:385-95|doi:10|1369/jhc|4A6514|2005|Epub2005Oct18|PMID:16234507| +UBERON:8410038 high endothelial venule of lymph node High Endothelial Venule CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:130, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1697, HGNC:17474, HGNC:2203, HGNC:29909, HGNC:30455, HGNC:4035, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:6012, HGNC:6895, HGNC:8823, HGNC:9707 DOI:10.1038/nri32982012.|GirardJP,MoussionC,FörsterR|HEVs,lymphaticsandhomeostaticimmunecelltraffickinginlymphnodes|NatRevImmunol|2012Nov;1211:762-73|doi:10|1038/nri3298|Epub2012Sep28|PMID:23018291| +UBERON:8410066 lymph node paracortex Paracortex CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1662, HGNC:1697, HGNC:17474, HGNC:30455, HGNC:4035, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:6895, HGNC:8823, HGNC:9707 DOI:10.1369/jhc.4A6514.2005|NoDOI|PusztaszeriMP,SeelentagW,BosmanFT|ImmunohistochemicalexpressionofendothelialmarkersCD31,CD34,vonWillebrandfactor,andFli-1innormalhumantissues|JHistochemCytochem|2006Apr;544:385-95|doi:10|1369/jhc|4A6514|2005|Epub2005Oct18|PMID:16234507| +UBERON:8410042 arteriole of lymph node Arteriole CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1662, HGNC:1697, HGNC:17474, HGNC:30455, HGNC:4035, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:6895, HGNC:8823, HGNC:9707 DOI:10.1369/jhc.4A6514.2005|PusztaszeriMP,SeelentagW,BosmanFT|ImmunohistochemicalexpressionofendothelialmarkersCD31,CD34,vonWillebrandfactor,andFli-1innormalhumantissues|JHistochemCytochem|2006Apr;544:385-95|doi:10|1369/jhc|4A6514|2005|Epub2005Oct18|PMID:16234507| +UBERON:8410034 lymph node artery Lymphatic Artery CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1662, HGNC:1689, HGNC:1697, HGNC:17474, HGNC:1764, HGNC:29602, HGNC:30455, HGNC:3349, HGNC:4035, HGNC:4279, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:5344, HGNC:6895, HGNC:8823, HGNC:9459, HGNC:9707 DOI:10.1007/s00441-008-0706-5|delaPazNG,D'AmorePA|Arterialversusvenousendothelialcells|CellTissueRes|2009Jan;3351:5-16|doi:10|1007/s00441-008-0706-5|Epub2008Oct30|PMID:18972135;PMCID:PMC4105978| +UBERON:8410041 venule of lymph node Venule CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1662, HGNC:1697, HGNC:17474, HGNC:1764, HGNC:29602, HGNC:30455, HGNC:3763, HGNC:4035, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:6895, HGNC:8823, HGNC:8823, HGNC:9459, HGNC:9707 DOI:10.1371/journal.pone.0094781|DOI:10.1369/jhc.4A6514.2005|ParkSM,AngelCE,McIntoshJD,MansellC,ChenCJ,CebonJ,DunbarPR|Mappingthedistinctivepopulationsoflymphaticendothelialcellsindifferentzonesofhumanlymphnodes|PLoSOne|2014Apr14;94:e94781|doi:10|1371/journal|pone|0094781|Erratumin:PLoSOne|2014;98:e106814|Mansell,ClaudiaM[correctedtoMansell,ClaudiaJ]|PMID:24733110;PMCID:PMC3986404||PusztaszeriMP,SeelentagW,BosmanFT|ImmunohistochemicalexpressionofendothelialmarkersCD31,CD34,vonWillebrandfactor,andFli-1innormalhumantissues|JHistochemCytochem|2006Apr;544:385-95|doi:10|1369/jhc|4A6514|2005|Epub2005Oct18|PMID:16234507| +UBERON:8410042 arteriole of lymph node Arteriole CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1662, HGNC:1697, HGNC:17474, HGNC:1764, HGNC:29602, HGNC:30455, HGNC:3349, HGNC:3763, HGNC:4035, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:6895, HGNC:8823, HGNC:9459, HGNC:9707 DOI:10.1371/journal.pone.0094781|DOI:10.1369/jhc.4A6514.2005|ParkSM,AngelCE,McIntoshJD,MansellC,ChenCJ,CebonJ,DunbarPR|Mappingthedistinctivepopulationsoflymphaticendothelialcellsindifferentzonesofhumanlymphnodes|PLoSOne|2014Apr14;94:e94781|doi:10|1371/journal|pone|0094781|Erratumin:PLoSOne|2014;98:e106814|Mansell,ClaudiaM[correctedtoMansell,ClaudiaJ]|PMID:24733110;PMCID:PMC3986404||PusztaszeriMP,SeelentagW,BosmanFT|ImmunohistochemicalexpressionofendothelialmarkersCD31,CD34,vonWillebrandfactor,andFli-1innormalhumantissues|JHistochemCytochem|2006Apr;544:385-95|doi:10|1369/jhc|4A6514|2005|Epub2005Oct18|PMID:16234507| +UBERON:0009745 lymph node medullary cord Medullary Cord CL:0000084 T Cell T Cell HGNC:1673, HGNC:1675, HGNC:1678, HGNC:1678, HGNC:1706 NoDOI +UBERON:0009745 lymph node medullary cord Medullary Cord CL:0000097 mast cell Mast Cell HGNC:12019, HGNC:12019, HGNC:14120, HGNC:6342, HGNC:6342, HGNC:7316 DOI:10.1016/j.iac.2014.01.005|DOI:10.1016/j.beha.2010.07.003.|DOI:10.3389/fimmu.2020.01234|HornyHP,SotlarK,ValentP|Mastocytosis:immunophenotypicalfeaturesofthetransformedmastcellsareuniqueamonghematopoieticcells|ImmunolAllergyClinNorthAm|2014May;342:315-21|doi:10|1016/j|iac|2014|01|005|PMID:24745676;PMCID:PMC5798580||ValentP,Cerny-ReitererS,HerrmannH,MirkinaI,GeorgeTI,SotlarK,SperrWR,HornyHP|Phenotypicheterogeneity,noveldiagnosticmarkers,andtargetexpressionprofilesinnormalandneoplastichumanmastcells|BestPractResClinHaematol|2010Sep;233:369-78|doi:10|1016/j|beha|2010|07|003|Epub2010Aug12|PMID:21112036||PalS,NathS,MeiningerCJ,GashevAA|EmergingRolesofMastCellsintheRegulationofLymphaticImmuno-Physiology|FrontImmunol|2020Jun17;11:1234|doi:10|3389/fimmu|2020|01234|PMID:32625213;PMCID:PMC7311670| +UBERON:8410075 lymph node paracortical cord Paracortical Cord CL:0000097 mast cell Mast Cell HGNC:12019, HGNC:12019, HGNC:14120, HGNC:6342, HGNC:6342, HGNC:7316 DOI:10.1016/j.iac.2014.01.005|DOI:10.1016/j.beha.2010.07.003.|DOI:10.3389/fimmu.2020.01234|HornyHP,SotlarK,ValentP|Mastocytosis:immunophenotypicalfeaturesofthetransformedmastcellsareuniqueamonghematopoieticcells|ImmunolAllergyClinNorthAm|2014May;342:315-21|doi:10|1016/j|iac|2014|01|005|PMID:24745676;PMCID:PMC5798580||ValentP,Cerny-ReitererS,HerrmannH,MirkinaI,GeorgeTI,SotlarK,SperrWR,HornyHP|Phenotypicheterogeneity,noveldiagnosticmarkers,andtargetexpressionprofilesinnormalandneoplastichumanmastcells|BestPractResClinHaematol|2010Sep;233:369-78|doi:10|1016/j|beha|2010|07|003|Epub2010Aug12|PMID:21112036||PalS,NathS,MeiningerCJ,GashevAA|EmergingRolesofMastCellsintheRegulationofLymphaticImmuno-Physiology|FrontImmunol|2020Jun17;11:1234|doi:10|3389/fimmu|2020|01234|PMID:32625213;PMCID:PMC7311670| +UBERON:0002194 capsule of lymph node Capsule CL:0000186 myofibroblast cell Myofibroblast HGNC:12692, HGNC:130, HGNC:130, HGNC:2197, HGNC:2197, HGNC:2201, HGNC:2201, HGNC:2770, HGNC:3327 NoDOI|NoDOI|NoDOI|Toccanier-PelteMF,SkalliO,KapanciY,GabbianiG|Characterizationofstromalcellswithmyoidfeaturesinlymphnodesandspleeninnormalandpathologicconditions|AmJPathol|1987Oct;1291:109-18|PMID:3310649;PMCID:PMC1899700| +UBERON:0002195 trabecula of lymph node Trabeculae CL:0000186 myofibroblast cell Myofibroblast HGNC:12692, HGNC:130, HGNC:130, HGNC:2197, HGNC:2197, HGNC:2201, HGNC:2201, HGNC:2770, HGNC:3327 NoDOI|DOI:10.1002/ar.1091830404|FolseDS,BeathardGA,GranholmNA|Smoothmuscleinlymphnodecapsuleandtrabeculae|AnatRec|1975Dec;1834:517-21|doi:10|1002/ar|1091830404|PMID:1200408| +UBERON:0010395 lymph node primary follicle Primary Follicle CL:0000235 macrophage Macrophage HGNC:11127, HGNC:1628, HGNC:1678, HGNC:1693, HGNC:4947, HGNC:6149, HGNC:6152 DOI:10.1111/cas.13137|KomoharaY,OhnishiK,TakeyaM|PossiblefunctionsofCD169-positivesinusmacrophagesinlymphnodesinanti-tumorimmuneresponses|CancerSci|2017Mar;1083:290-295|doi:10|1111/cas|13137|Epub2017Mar7|PMID:28002629;PMCID:PMC5378284| +UBERON:0009744 lymph node medullary sinus Medullary Sinus CL:0000235 macrophage Macrophage HGNC:11127, HGNC:1628, HGNC:1678, HGNC:1693, HGNC:4947, HGNC:6149, HGNC:6152 DOI:10.1182/blood.v97.1.288|DOI:10.1182/blood-2008-06-165266|HartnellA,SteelJ,TurleyH,JonesM,JacksonDG,CrockerPR|Characterizationofhumansialoadhesin,asialicacidbindingreceptorexpressedbyresidentandinflammatorymacrophagepopulations|Blood|2001Jan1;971:288-96|doi:10|1182/blood|v97|1|288|PMID:11133773||AngelCE,ChenCJ,HorlacherOC,WinklerS,JohnT,BrowningJ,MacGregorD,CebonJ,DunbarPR|Distinctivelocalizationofantigen-presentingcellsinhumanlymphnodes|Blood|2009Feb5;1136:1257-67|doi:10|1182/blood-2008-06-165266|Epub2008Nov5|PMID:18987360;PMCID:PMC2687552| +UBERON:0009745 lymph node medullary cord Medullary Cord CL:0000235 macrophage Macrophage HGNC:1628, HGNC:1628, HGNC:1641, HGNC:1678, HGNC:1693, HGNC:4947, HGNC:6152, HGNC:6895, HGNC:7228 DOI:10.1182/blood-2008-06-165266|AngelCE,ChenCJ,HorlacherOC,WinklerS,JohnT,BrowningJ,MacGregorD,CebonJ,DunbarPR|Distinctivelocalizationofantigen-presentingcellsinhumanlymphnodes|Blood|2009Feb5;1136:1257-67|doi:10|1182/blood-2008-06-165266|Epub2008Nov5|PMID:18987360;PMCID:PMC2687552| +UBERON:8410074 lymph node paracortical sinus Paracortical Sinus CL:0000235 macrophage Macrophage HGNC:11127, HGNC:1628, HGNC:1628, HGNC:1631, HGNC:1641, HGNC:1678, HGNC:1693, HGNC:4947, HGNC:6152, HGNC:7228 DOI:10.1182/blood-2008-06-165266|DOI:10.1097/01.pas.0000157940.80538.ec|DOI:10.1053/j.semdp.2017.11.002|AngelCE,ChenCJ,HorlacherOC,WinklerS,JohnT,BrowningJ,MacGregorD,CebonJ,DunbarPR|Distinctivelocalizationofantigen-presentingcellsinhumanlymphnodes|Blood|2009Feb5;1136:1257-67|doi:10|1182/blood-2008-06-165266|Epub2008Nov5|PMID:18987360;PMCID:PMC2687552||NguyenTT,SchwartzEJ,WestRB,WarnkeRA,ArberDA,NatkunamY|ExpressionofCD163hemoglobinscavengerreceptorinnormaltissues,lymphomas,carcinomas,andsarcomasislargelyrestrictedtothemonocyte/macrophagelineage|AmJSurgPathol|2005May;295:617-24|doi:10|1097/01|pas|0000157940|80538|ec|PMID:15832085||EganC,JaffeES|Non-neoplastichistiocyticanddendriticcelldisordersinlymphnodes|SeminDiagnPathol|2018Jan;351:20-33|doi:10|1053/j|semdp|2017|11|002|Epub2017Nov3|PMID:29150219;PMCID:PMC5803315| +UBERON:8410075 lymph node paracortical cord Paracortical Cord CL:0000236 B cell B Cell HGNC:1633, HGNC:1698, HGNC:4947, HGNC:7315, HGNC:7315 NODOI|DOI:10.1038/s41573-020-00092-2|HsuSM,JaffeES|PhenotypicexpressionofB-lymphocytes|2|Immunoglobulinexpressionofgerminalcentercells|AmJPathol|1984Mar;1143:396-402|PMID:6364822;PMCID:PMC1900414||LeeDSW,RojasOL,GommermanJL|Bcelldepletiontherapiesinautoimmunedisease:advancesandmechanisticinsights|NatRevDrugDiscov|2020Dec15:1–21|doi:10|1038/s41573-020-00092-2|Epubaheadofprint|PMID:33324003;PMCID:PMC7737718| +UBERON:0009745 lymph node medullary cord Medullary Cord CL:0000236 B cell B Cell HGNC:1633, HGNC:1633, HGNC:1698, HGNC:4947, HGNC:7315, HGNC:7315 NoDOI +UBERON:8410052 lymph node germinal center light zone Light Zone CL:0000442 follicular dendritic cell Follicular Dendritic Cell HGNC:10639, HGNC:10639, HGNC:12663, HGNC:12663, HGNC:1697, HGNC:2334, HGNC:2336, HGNC:2336, HGNC:29602, HGNC:3612, HGNC:3612, HGNC:3614, HGNC:3618, HGNC:5344, HGNC:6765, HGNC:7036 DOI:10.1016/j.smim.2007.12.001|DOI:10.1097/PAI.0b013e318183a8e2|DOI:10.1016/j.ajpath.2010.12.039|AllenCD,CysterJG|Folliculardendriticcellnetworksofprimaryfolliclesandgerminalcenters:phenotypeandfunction|SeminImmunol|2008Feb;201:14-25|doi:10|1016/j|smim|2007|12|001|Epub2008Feb7|PMID:18261920;PMCID:PMC236679|MarseeDK,PinkusGS,HornickJL|PodoplaninD2-40isahighlyeffectivemarkeroffolliculardendriticcells|ApplImmunohistochemMolMorphol|2009Mar;172:102-7|doi:10|1097/PAI|0b013e318183a8e2|PMID:18838918||LinkA,HardieDL,FavreS,BritschgiMR,AdamsDH,SixtM,CysterJG,BuckleyCD,LutherSA|AssociationofT-zonereticularnetworksandconduitswithectopiclymphoidtissuesinmiceandhumans|AmJPathol|2011Apr;1784:1662-75|doi:10|1016/j|ajpath|2010|12|039|PMID:21435450;PMCID:PMC3070229| +UBERON:0010395 lymph node primary follicle Primary Follicle CL:0000442 follicular dendritic cell Follicular Dendritic Cell HGNC:10639, HGNC:10639, HGNC:12663, HGNC:12663, HGNC:1697, HGNC:2334, HGNC:2336, HGNC:2336, HGNC:29602, HGNC:3614, HGNC:3618, HGNC:5344, HGNC:6765, HGNC:7036 DOI:10.1016/j.smim.2007.12.001|DOI:10.1097/PAI.0b013e318183a8e2|DOI:10.1016/j.ajpath.2010.12.039|AllenCD,CysterJG|Folliculardendriticcellnetworksofprimaryfolliclesandgerminalcenters:phenotypeandfunction|SeminImmunol|2008Feb;201:14-25|doi:10|1016/j|smim|2007|12|001|Epub2008Feb7|PMID:18261920;PMCID:PMC236679|MarseeDK,PinkusGS,HornickJL|PodoplaninD2-40isahighlyeffectivemarkeroffolliculardendriticcells|ApplImmunohistochemMolMorphol|2009Mar;172:102-7|doi:10|1097/PAI|0b013e318183a8e2|PMID:18838918||LinkA,HardieDL,FavreS,BritschgiMR,AdamsDH,SixtM,CysterJG,BuckleyCD,LutherSA|AssociationofT-zonereticularnetworksandconduitswithectopiclymphoidtissuesinmiceandhumans|AmJPathol|2011Apr;1784:1662-75|doi:10|1016/j|ajpath|2010|12|039|PMID:21435450;PMCID:PMC3070229| +UBERON:8410067 lymph node interfollicular cortex Interfollicular Cortex CL:0000451 dendritic cell Dendritic Cell HGNC:11919, HGNC:11919, HGNC:1697, HGNC:1700, HGNC:1703, HGNC:1703, HGNC:1705, HGNC:4947, HGNC:5344, HGNC:6152, HGNC:6152 DOI:10.1016/S0002-94401061680-X|TakahashiK,KenjiA,NorihiroT,EisakuK,TakashiO,KazuhikoH,TadashiY,TadaatsuA|MorphologicalinteractionsofinterdigitatingdendriticcellswithBandTcellsinhumanmesentericlymphnodes|AmJPathol|2001Jul;1591:131-8|doi:10|1016/S0002-94401061680-X|PMID:11438461;PMCID:PMC1850413| +UBERON:8410075 lymph node paracortical cord Paracortical Cord CL:0000451 dendritic cell Dendritic Cell HGNC:10489, HGNC:11919, HGNC:11919, HGNC:1697, HGNC:1700, HGNC:1703, HGNC:1703, HGNC:1705, HGNC:4947, HGNC:5344, HGNC:6152 DOI:10.1016/S0002-94401061694-X|DOI:10.1053/j.semdp.2017.11.002|SummersKL,HockBD,McKenzieJL,HartDN|Phenotypiccharacterizationoffivedendriticcellsubsetsinhumantonsils|AmJPathol|2001Jul;1591:285-95|doi:10|1016/S0002-94401061694-X|PMID:11438475;PMCID:PMC1850402||EganC,JaffeES|Non-neoplastichistiocyticanddendriticcelldisordersinlymphnodes|SeminDiagnPathol|2018Jan;351:20-33|doi:10|1053/j|semdp|2017|11|002|Epub2017Nov3|PMID:29150219;PMCID:PMC5803315| +UBERON:0009745 lymph node medullary cord Medullary Cord CL:0000451 dendritic cell Dendritic Cell HGNC:11919, HGNC:1697, HGNC:1703, HGNC:17635, HGNC:4947, HGNC:6152 DOI:10.1016/S0002-94401061694-X|DOI:10.1053/j.semdp.2017.11.002|SummersKL,HockBD,McKenzieJL,HartDN|Phenotypiccharacterizationoffivedendriticcellsubsetsinhumantonsils|AmJPathol|2001Jul;1591:285-95|doi:10|1016/S0002-94401061694-X|PMID:11438475;PMCID:PMC1850402||EganC,JaffeES|Non-neoplastichistiocyticanddendriticcelldisordersinlymphnodes|SeminDiagnPathol|2018Jan;351:20-33|doi:10|1053/j|semdp|2017|11|002|Epub2017Nov3|PMID:29150219;PMCID:PMC5803315| +UBERON:8410075 lymph node paracortical cord Paracortical Cord CL:0000545 T-helper 1 cell Th1 cell HGNC:11599, HGNC:1605, HGNC:1607, HGNC:1673, HGNC:1675, HGNC:1678, HGNC:1706, HGNC:4540, HGNC:5361, HGNC:6024 DOI:10.4049/jimmunol.1701025|NoDOI|KunickiMA,AmayaHernandezLC,DavisKL,BacchettaR,RoncaroloMG|IdentityandDiversityofHumanPeripheralThandTRegulatoryCellsDefinedbySingle-CellMassCytometry|JImmunol|2018Jan1;2001:336-346|doi:10|4049/jimmunol|1701025|Epub2017Nov27|PMID:29180490| +UBERON:8410067 lymph node interfollicular cortex Interfollicular Cortex CL:0000545 T-helper 1 cell Th1 cell HGNC:11599, HGNC:1605, HGNC:1607, HGNC:1673, HGNC:1675, HGNC:1678, HGNC:1706, HGNC:4540, HGNC:5361, HGNC:6024 DOI:10.4049/jimmunol.1701025|NoDOI|KunickiMA,AmayaHernandezLC,DavisKL,BacchettaR,RoncaroloMG|IdentityandDiversityofHumanPeripheralThandTRegulatoryCellsDefinedbySingle-CellMassCytometry|JImmunol|2018Jan1;2001:336-346|doi:10|4049/jimmunol|1701025|Epub2017Nov27|PMID:29180490| +UBERON:8410067 lymph node interfollicular cortex Interfollicular Cortex CL:0000546 T-helper 2 cell Th2 cell HGNC:1605, HGNC:1673, HGNC:1675, HGNC:1678, HGNC:1706, HGNC:4172, HGNC:4502, HGNC:4540, HGNC:5361, HGNC:6024 DOI:10.4049/jimmunol.1701025|NoDOI|KunickiMA,AmayaHernandezLC,DavisKL,BacchettaR,RoncaroloMG|IdentityandDiversityofHumanPeripheralThandTRegulatoryCellsDefinedbySingle-CellMassCytometry|JImmunol|2018Jan1;2001:336-346|doi:10|4049/jimmunol|1701025|Epub2017Nov27|PMID:29180490| +UBERON:8410075 lymph node paracortical cord Paracortical Cord CL:0000546 T-helper 2 cell Th2 cell HGNC:1605, HGNC:1673, HGNC:1675, HGNC:1678, HGNC:1706, HGNC:4172, HGNC:4502, HGNC:4540, HGNC:5361, HGNC:6024 DOI:10.4049/jimmunol.1701025|NoDOI|KunickiMA,AmayaHernandezLC,DavisKL,BacchettaR,RoncaroloMG|IdentityandDiversityofHumanPeripheralThandTRegulatoryCellsDefinedbySingle-CellMassCytometry|JImmunol|2018Jan1;2001:336-346|doi:10|4049/jimmunol|1701025|Epub2017Nov27|PMID:29180490| +UBERON:8410067 lymph node interfollicular cortex Interfollicular Cortex CL:0000623 natural killer cell Natural Killer Cell HGNC:11935, HGNC:1674, HGNC:1675, HGNC:18788, HGNC:3619, HGNC:4234, HGNC:5361, HGNC:6024, HGNC:6342, HGNC:6374, HGNC:6378, HGNC:6378, HGNC:6378, HGNC:7656 NoDOI|DOI:10.1038/nri.2016.34|BjörkströmNK,LjunggrenHG,MichaëlssonJ|Emerginginsightsintonaturalkillercellsinhumanperipheraltissues|NatRevImmunol|2016Apr28;165:310-20|doi:10|1038/nri|2016|34|PMID:27121652| +UBERON:8410075 lymph node paracortical cord Paracortical Cord CL:0000623 natural killer cell Natural Killer Cell HGNC:11935, HGNC:1674, HGNC:1675, HGNC:3619, HGNC:4234, HGNC:5361, HGNC:6024, HGNC:6342, HGNC:6378, HGNC:6378, HGNC:6378, HGNC:7656 NoDOI|DOI:10.1038/nri.2016.34|BjörkströmNK,LjunggrenHG,MichaëlssonJ|Emerginginsightsintonaturalkillercellsinhumanperipheraltissues|NatRevImmunol|2016Apr28;165:310-20|doi:10|1038/nri|2016|34|PMID:27121652| +UBERON:0002007 medulla of lymph node Medulla CL:0000669 pericyte cell Pericyte HGNC:8803, HGNC:8803, HGNC:8804, HGNC:8804 DOI:10.3389/fcvm.2020.00052|XiangM,GrossoRA,TakedaA,PanJ,BekkhusT,BruloisK,DermadiD,NordlingS,VanlandewijckM,JalkanenS,UlvmarMH,ButcherEC|ASingle-CellTranscriptionalRoadmapoftheMouseandHumanLymphNodeLymphaticVasculature|FrontCardiovascMed|2020Apr30;7:52|doi:10|3389/fcvm|2020|00052|PMID:32426372;PMCID:PMC7204639| +UBERON:8410041 venule of lymph node Venule CL:0000669 pericyte cell Pericyte HGNC:8803, HGNC:8803, HGNC:8804, HGNC:8804 DOI:10.3389/fcvm.2020.00052|XiangM,GrossoRA,TakedaA,PanJ,BekkhusT,BruloisK,DermadiD,NordlingS,VanlandewijckM,JalkanenS,UlvmarMH,ButcherEC|ASingle-CellTranscriptionalRoadmapoftheMouseandHumanLymphNodeLymphaticVasculature|FrontCardiovascMed|2020Apr30;7:52|doi:10|3389/fcvm|2020|00052|PMID:32426372;PMCID:PMC7204639| +UBERON:0009745 lymph node medullary cord Medullary Cord CL:0000786 plasma cell Plasma Cell HGNC:10658, HGNC:10658, HGNC:11922, HGNC:1667, HGNC:1667, HGNC:1698, HGNC:6119, HGNC:6119, HGNC:7315, HGNC:9346 NoDOI|NoDOI|HsuSM,JaffeES|PhenotypicexpressionofB-lymphocytes|2|Immunoglobulinexpressionofgerminalcentercells|AmJPathol|1984Mar;1143:396-402|PMID:6364822;PMCID:PMC1900414| +UBERON:8410075 lymph node paracortical cord Paracortical Cord CL:0000786 plasma cell Plasma Cell HGNC:10658, HGNC:10658, HGNC:1667, HGNC:1667, HGNC:1698, HGNC:6119, HGNC:6119, HGNC:7315, HGNC:9346 NoDOI +UBERON:0010420 lymph node germinal center mantle zone Mantle Zone CL:0000787 memory B cell Memory B Cell HGNC:1633, HGNC:1633, HGNC:1697, HGNC:1698, HGNC:4947, HGNC:7315, HGNC:7315, HGNC:9666 NODOI|NoDOI|HsuSM,JaffeES|PhenotypicexpressionofB-lymphocytes|2|Immunoglobulinexpressionofgerminalcentercells|AmJPathol|1984Mar;1143:396-402|PMID:6364822;PMCID:PMC1900414| +UBERON:0010395 lymph node primary follicle Primary Follicle CL:0000787 memory B cell Memory B Cell HGNC:11922, HGNC:1633, HGNC:1633, HGNC:1697, HGNC:1698, HGNC:4947, HGNC:7315, HGNC:7315, HGNC:9666 NODOI|NoDOI|HsuSM,JaffeES|PhenotypicexpressionofB-lymphocytes|2|Immunoglobulinexpressionofgerminalcentercells|AmJPathol|1984Mar;1143:396-402|PMID:6364822;PMCID:PMC1900414| +UBERON:0010395 lymph node primary follicle Primary Follicle CL:0000788 naive B cell Naive B Cell HGNC:10720, HGNC:11922, HGNC:1633, HGNC:1636, HGNC:1667, HGNC:1697, HGNC:2336, HGNC:24692, HGNC:3612, HGNC:3612, HGNC:4947, HGNC:5480, HGNC:5480, HGNC:7154, HGNC:7315, HGNC:7315, HGNC:9666, HGNC:990 NODOI|NoDOI|HsuSM,JaffeES|PhenotypicexpressionofB-lymphocytes|2|Immunoglobulinexpressionofgerminalcentercells|AmJPathol|1984Mar;1143:396-402|PMID:6364822;PMCID:PMC1900414| +UBERON:0010420 lymph node germinal center mantle zone Mantle Zone CL:0000788 naive B cell Naive B Cell HGNC:10720, HGNC:1633, HGNC:1636, HGNC:1667, HGNC:1697, HGNC:2336, HGNC:24692, HGNC:3612, HGNC:3612, HGNC:4947, HGNC:5480, HGNC:5480, HGNC:7154, HGNC:7315, HGNC:7315, HGNC:9666, HGNC:990 NoDOI|NoDOI +UBERON:8410075 lymph node paracortical cord Paracortical Cord CL:0000798 gamma-delta T cell Gamma/Delta T cells HGNC:12253, HGNC:12271, HGNC:1673, HGNC:1675, HGNC:5361, HGNC:6378 DOI:10.1002/cti2.1079|SantS,JenkinsMR,DashP,WatsonKA,WangZ,PizzollaA,KoutsakosM,NguyenTH,LappasM,CroweJ,LoudovarisT,ManneringSI,WestallGP,KotsimbosTC,ChengAC,WakimL,DohertyPC,ThomasPG,LohL,KedzierskaK|Human??T-cellreceptorrepertoireisshapedbyinfluenzaviruses,ageandtissuecompartmentalisation|ClinTranslImmunology|2019Sep23;89:e1079|doi:10|1002/cti2|1079|PMID:31559018;PMCID:PMC6756999| +UBERON:8410075 lymph node paracortical cord Paracortical Cord CL:0000815 regulatory T cell T Regulatory Cell HGNC:1675, HGNC:1678, HGNC:2505, HGNC:6008, HGNC:6008, HGNC:6106, HGNC:6106 DOI:10.4049/jimmunol.1701025|KunickiMA,AmayaHernandezLC,DavisKL,BacchettaR,RoncaroloMG|IdentityandDiversityofHumanPeripheralThandTRegulatoryCellsDefinedbySingle-CellMassCytometry|JImmunol|2018Jan1;2001:336-346|doi:10|4049/jimmunol|1701025|Epub2017Nov27|PMID:29180490| +UBERON:8410067 lymph node interfollicular cortex Interfollicular Cortex CL:0000815 regulatory T cell T Regulatory Cell HGNC:1675, HGNC:1678, HGNC:2505, HGNC:6008, HGNC:6008, HGNC:6106, HGNC:6106 DOI:10.4049/jimmunol.1701025|NoDOI|KunickiMA,AmayaHernandezLC,DavisKL,BacchettaR,RoncaroloMG|IdentityandDiversityofHumanPeripheralThandTRegulatoryCellsDefinedbySingle-CellMassCytometry|JImmunol|2018Jan1;2001:336-346|doi:10|4049/jimmunol|1701025|Epub2017Nov27|PMID:29180490| +UBERON:0005463 subcapsular sinus of lymph node Subcapsular Sinus CL:0000887 lymph node subcapsular sinus macrophage Macrophage HGNC:11127, HGNC:1628, HGNC:1628, HGNC:1631, HGNC:1641, HGNC:1678, HGNC:1678, HGNC:1693, HGNC:4947, HGNC:6152, HGNC:6152, HGNC:7228 DOI:10.1182/blood-2008-06-165266|DOI:10.1097/01.pas.0000157940.80538.ec|DOI:10.1053/j.semdp.2017.11.002|AngelCE,ChenCJ,HorlacherOC,WinklerS,JohnT,BrowningJ,MacGregorD,CebonJ,DunbarPR|Distinctivelocalizationofantigen-presentingcellsinhumanlymphnodes|Blood|2009Feb5;1136:1257-67|doi:10|1182/blood-2008-06-165266|Epub2008Nov5|PMID:18987360;PMCID:PMC2687552||NguyenTT,SchwartzEJ,WestRB,WarnkeRA,ArberDA,NatkunamY|ExpressionofCD163hemoglobinscavengerreceptorinnormaltissues,lymphomas,carcinomas,andsarcomasislargelyrestrictedtothemonocyte/macrophagelineage|AmJSurgPathol|2005May;295:617-24|doi:10|1097/01|pas|0000157940|80538|ec|PMID:15832085||EganC,JaffeES|Non-neoplastichistiocyticanddendriticcelldisordersinlymphnodes|SeminDiagnPathol|2018Jan;351:20-33|doi:10|1053/j|semdp|2017|11|002|Epub2017Nov3|PMID:29150219;PMCID:PMC5803315| +UBERON:8410052 lymph node germinal center light zone Light Zone CL:0000888 lymph node tingible body macrophage Tingible Body Macrophage HGNC:11127, HGNC:11219, HGNC:1628, HGNC:1678, HGNC:1693, HGNC:4947, HGNC:6149, HGNC:6152 DOI:10.1111/cas.13137|KomoharaY,OhnishiK,TakeyaM|PossiblefunctionsofCD169-positivesinusmacrophagesinlymphnodesinanti-tumorimmuneresponses|CancerSci|2017Mar;1083:290-295|doi:10|1111/cas|13137|Epub2017Mar7|PMID:28002629;PMCID:PMC5378284| +UBERON:8410067 lymph node interfollicular cortex Interfollicular Cortex CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell Naive CD4+ T cell HGNC:10720, HGNC:1608, HGNC:1608, HGNC:1653, HGNC:1673, HGNC:1675, HGNC:1678, HGNC:1706, HGNC:9666 DOI:10.4049/jimmunol.1701025|NoDOI|KunickiMA,AmayaHernandezLC,DavisKL,BacchettaR,RoncaroloMG|IdentityandDiversityofHumanPeripheralThandTRegulatoryCellsDefinedbySingle-CellMassCytometry|JImmunol|2018Jan1;2001:336-346|doi:10|4049/jimmunol|1701025|Epub2017Nov27|PMID:29180490| +UBERON:8410075 lymph node paracortical cord Paracortical Cord CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell Naive CD4+ T cell HGNC:10720, HGNC:1608, HGNC:1608, HGNC:1653, HGNC:1673, HGNC:1675, HGNC:1678, HGNC:1706, HGNC:9666 DOI:10.4049/jimmunol.1701025|NoDOI|KunickiMA,AmayaHernandezLC,DavisKL,BacchettaR,RoncaroloMG|IdentityandDiversityofHumanPeripheralThandTRegulatoryCellsDefinedbySingle-CellMassCytometry|JImmunol|2018Jan1;2001:336-346|doi:10|4049/jimmunol|1701025|Epub2017Nov27|PMID:29180490| +UBERON:8410075 lymph node paracortical cord Paracortical Cord CL:0000897 CD4-positive, alpha-beta memory T cell Memory CD4+ T cell HGNC:16647, HGNC:1673, HGNC:1675, HGNC:1678, HGNC:1706, HGNC:6134, HGNC:9666 DOI:10.4049/jimmunol.1701025|NoDOI|KunickiMA,AmayaHernandezLC,DavisKL,BacchettaR,RoncaroloMG|IdentityandDiversityofHumanPeripheralThandTRegulatoryCellsDefinedbySingle-CellMassCytometry|JImmunol|2018Jan1;2001:336-346|doi:10|4049/jimmunol|1701025|Epub2017Nov27|PMID:29180490| +UBERON:8410067 lymph node interfollicular cortex Interfollicular Cortex CL:0000897 CD4-positive, alpha-beta memory T cell Memory CD4+ T cell HGNC:16647, HGNC:1673, HGNC:1675, HGNC:1678, HGNC:1706, HGNC:6134, HGNC:9666 DOI:10.4049/jimmunol.1701025|NoDOI|KunickiMA,AmayaHernandezLC,DavisKL,BacchettaR,RoncaroloMG|IdentityandDiversityofHumanPeripheralThandTRegulatoryCellsDefinedbySingle-CellMassCytometry|JImmunol|2018Jan1;2001:336-346|doi:10|4049/jimmunol|1701025|Epub2017Nov27|PMID:29180490| +UBERON:8410067 lymph node interfollicular cortex Interfollicular Cortex CL:0000899 T-helper 17 cell Th17 cell HGNC:10260, HGNC:1607, HGNC:1607, HGNC:1673, HGNC:1675, HGNC:1678, HGNC:1706, HGNC:5361, HGNC:6024, HGNC:6373 DOI:10.4049/jimmunol.1701025|NoDOI|KunickiMA,AmayaHernandezLC,DavisKL,BacchettaR,RoncaroloMG|IdentityandDiversityofHumanPeripheralThandTRegulatoryCellsDefinedbySingle-CellMassCytometry|JImmunol|2018Jan1;2001:336-346|doi:10|4049/jimmunol|1701025|Epub2017Nov27|PMID:29180490| +UBERON:8410075 lymph node paracortical cord Paracortical Cord CL:0000899 T-helper 17 cell Th17 cell HGNC:10260, HGNC:1607, HGNC:1607, HGNC:1673, HGNC:1675, HGNC:1678, HGNC:1706, HGNC:5361, HGNC:6024, HGNC:6373 DOI:10.4049/jimmunol.1701025|NoDOI|KunickiMA,AmayaHernandezLC,DavisKL,BacchettaR,RoncaroloMG|IdentityandDiversityofHumanPeripheralThandTRegulatoryCellsDefinedbySingle-CellMassCytometry|JImmunol|2018Jan1;2001:336-346|doi:10|4049/jimmunol|1701025|Epub2017Nov27|PMID:29180490| +UBERON:8410075 lymph node paracortical cord Paracortical Cord CL:0000900 naive thymus-derived CD8-positive, alpha-beta T cell Naive CD8+ T cell HGNC:10720, HGNC:1608, HGNC:1608, HGNC:1653, HGNC:1673, HGNC:1675, HGNC:1678, HGNC:1706, HGNC:1706, HGNC:9666 DOI:10.1002/cyto.a.20643|AppayV,vanLierRA,SallustoF,RoedererM|PhenotypeandfunctionofhumanTlymphocytesubsets:consensusandissues|CytometryA|2008Nov;7311:975-83|doi:10|1002/cyto|a|20643|PMID:18785267| +UBERON:8410067 lymph node interfollicular cortex Interfollicular Cortex CL:0000900 naive thymus-derived CD8-positive, alpha-beta T cell Naive CD8+ T cell HGNC:10720, HGNC:1608, HGNC:1608, HGNC:1653, HGNC:1673, HGNC:1675, HGNC:1678, HGNC:1706, HGNC:1706, HGNC:9666 NoDOI +UBERON:8410067 lymph node interfollicular cortex Interfollicular Cortex CL:0000909 CD8-positive, alpha-beta memory T cell Memory CD8+ T cell HGNC:16647, HGNC:1673, HGNC:1675, HGNC:1678, HGNC:1706, HGNC:1706, HGNC:6134, HGNC:9666 NoDOI +UBERON:8410075 lymph node paracortical cord Paracortical Cord CL:0000909 CD8-positive, alpha-beta memory T cell Memory CD8+ T cell HGNC:16647, HGNC:1673, HGNC:1675, HGNC:1678, HGNC:1706, HGNC:1706, HGNC:6134, HGNC:9666 DOI:10.1002/cyto.a.20643|AppayV,vanLierRA,SallustoF,RoedererM|PhenotypeandfunctionofhumanTlymphocytesubsets:consensusandissues|CytometryA|2008Nov;7311:975-83|doi:10|1002/cyto|a|20643|PMID:18785267| +UBERON:8410075 lymph node paracortical cord Paracortical Cord CL:0000910 cytotoxic T cell T Cytotoxic Cell HGNC:11802, HGNC:1673, HGNC:1675, HGNC:1706, HGNC:1706, HGNC:4709, HGNC:4709, HGNC:4711, HGNC:9360 DOI:10.1002/cyto.a.20643|AppayV,vanLierRA,SallustoF,RoedererM|PhenotypeandfunctionofhumanTlymphocytesubsets:consensusandissues|CytometryA|2008Nov;7311:975-83|doi:10|1002/cyto|a|20643|PMID:18785267| +UBERON:8410067 lymph node interfollicular cortex Interfollicular Cortex CL:0000910 cytotoxic T cell T Cytotoxic Cell HGNC:11802, HGNC:1673, HGNC:1675, HGNC:1706, HGNC:1706, HGNC:4709, HGNC:4709, HGNC:4711, HGNC:9360 NODOI|HsuSM,JaffeES|PhenotypicexpressionofTlymphocytesinthymusandperipherallymphoidtissues|AmJPathol|1985Oct;1211:69-78|PMID:3931482;PMCID:PMC1888042| +UBERON:8410052 lymph node germinal center light zone Light Zone CL:0000980 plasmablast Plasmablast HGNC:10658, HGNC:10658, HGNC:11922, HGNC:1667, HGNC:1667, HGNC:1698, HGNC:2561, HGNC:6119, HGNC:6119, HGNC:7315, HGNC:9346 NoDOI +UBERON:0009745 lymph node medullary cord Medullary Cord CL:0000980 plasmablast Plasmablast HGNC:10658, HGNC:10658, HGNC:1667, HGNC:1667, HGNC:1698, HGNC:2561, HGNC:6119, HGNC:6119, HGNC:7315, HGNC:9346 NoDOI +UBERON:8410075 lymph node paracortical cord Paracortical Cord CL:0001058 plasmacytoid dendritic cell, human Plasmacytoid Dendritic Cell HGNC:11634, HGNC:13258, HGNC:13258, HGNC:4709, HGNC:5713, HGNC:6012, HGNC:6012, HGNC:6152, HGNC:9666 DOI:10.1016/S0002-94401061694-X|DOI:10.1097/pap.0b013e3181bb6bc2|SummersKL,HockBD,McKenzieJL,HartDN|Phenotypiccharacterizationoffivedendriticcellsubsetsinhumantonsils|AmJPathol|2001Jul;1591:285-95|doi:10|1016/S0002-94401061694-X|PMID:11438475;PMCID:PMC1850402||JegalianAG,FacchettiF,JaffeES|Plasmacytoiddendriticcells:physiologicrolesandpathologicstates|AdvAnatPathol|2009Nov;166:392-404|doi:10|1097/PAP|0b013e3181bb6bc2|PMID:19851130;PMCID:PMC6329307| +UBERON:8410052 lymph node germinal center light zone Light Zone CL:0002038 T follicular helper cell T Follicular Helper Cell HGNC:1060, HGNC:1060, HGNC:11935, HGNC:1673, HGNC:1675, HGNC:1678, HGNC:1678, HGNC:1694, HGNC:5351, HGNC:6776, HGNC:8760, HGNC:8760, HGNC:921 DOI:10.1016/j.immuni.2013.08.031|DOI:10.1097/01.pas.0000209855.28282.ce|LocciM,Havenar-DaughtonC,LandaisE,WuJ,KroenkeMA,ArlehamnCL,SuLF,CubasR,DavisMM,SetteA,HaddadEK;InternationalAIDSVaccineInitiativeProtocolCPrincipalInvestigators,PoignardP,CrottyS|HumancirculatingPD-1+CXCR3-CXCR5+memoryTfhcellsarehighlyfunctionalandcorrelatewithbroadlyneutralizingHIVantibodyresponses|Immunity|2013Oct17;394:758-69|doi:10|1016/j|immuni|2013|08|031|Epub2013Sep12|PMID:24035365;PMCID:PMC3996844||DorfmanDM,BrownJA,ShahsafaeiA,FreemanGJ|Programmeddeath-1PD-1isamarkerofgerminalcenter-associatedTcellsandangioimmunoblasticT-celllymphoma|AmJSurgPathol|2006Jul;307:802-10|doi:10|1097/01|pas|0000209855|28282|ce|PMID:16819321;PMCID:PMC3137919| +UBERON:0009744 lymph node medullary sinus Medullary Sinus CL:0002138 endothelial cell of lymphatic vessel Lymphatic Endothelial Cell HGNC:11924, HGNC:13523, HGNC:14687, HGNC:14687, HGNC:1527, HGNC:1611, HGNC:1641, HGNC:1641, HGNC:17635, HGNC:18629, HGNC:24591, HGNC:29602, HGNC:5344, HGNC:6895, HGNC:6895, HGNC:7035, HGNC:8021, HGNC:8514, HGNC:8823, HGNC:9459, HGNC:9666 DOI:10.3389/fcvm.2020.00052|DOI:10.1016/j.immuni.2019.06.027|XiangM,GrossoRA,TakedaA,PanJ,BekkhusT,BruloisK,DermadiD,NordlingS,VanlandewijckM,JalkanenS,UlvmarMH,ButcherEC|ASingle-CellTranscriptionalRoadmapoftheMouseandHumanLymphNodeLymphaticVasculature|FrontCardiovascMed|2020Apr30;7:52|doi:10|3389/fcvm|2020|00052|PMID:32426372;PMCID:PMC7204639||TakedaA,HollménM,DermadiD,PanJ,BruloisKF,KaukonenR,LönnbergT,BoströmP,KoskivuoI,IrjalaH,MiyasakaM,SalmiM,ButcherEC,JalkanenS|Single-CellSurveyofHumanLymphaticsUnveilsMarkedEndothelialCellHeterogeneityandMechanismsofHomingforNeutrophils|Immunity|2019Sep17;513:561-572|e5|doi:10|1016/j|immuni|2019|06|027|Epub2019Aug8|PMID:31402260| +UBERON:0001473 lymphatic vessel Lymphatic Vessels CL:0002138 endothelial cell of lymphatic vessel Endothelial Cell of Lymphatic Vessel HGNC:11924, HGNC:14687, HGNC:1527, HGNC:1527, HGNC:1611, HGNC:1611, HGNC:29602, HGNC:6895, HGNC:7035, HGNC:8021, HGNC:8021, HGNC:8051, HGNC:8514, HGNC:8823, HGNC:9459, HGNC:9666 DOI:10.3389/fcvm.2020.00052|DOI:10.1016/j.immuni.2019.06.027|XiangM,GrossoRA,TakedaA,PanJ,BekkhusT,BruloisK,DermadiD,NordlingS,VanlandewijckM,JalkanenS,UlvmarMH,ButcherEC|ASingle-CellTranscriptionalRoadmapoftheMouseandHumanLymphNodeLymphaticVasculature|FrontCardiovascMed|2020Apr30;7:52|doi:10|3389/fcvm|2020|00052|PMID:32426372;PMCID:PMC7204639||TakedaA,HollménM,DermadiD,PanJ,BruloisKF,KaukonenR,LönnbergT,BoströmP,KoskivuoI,IrjalaH,MiyasakaM,SalmiM,ButcherEC,JalkanenS|Single-CellSurveyofHumanLymphaticsUnveilsMarkedEndothelialCellHeterogeneityandMechanismsofHomingforNeutrophils|Immunity|2019Sep17;513:561-572|e5|doi:10|1016/j|immuni|2019|06|027|Epub2019Aug8|PMID:31402260| +UBERON:8410074 lymph node paracortical sinus Paracortical Sinus CL:0002138 endothelial cell of lymphatic vessel Lymphatic Endothelial Cell HGNC:11924, HGNC:13523, HGNC:14687, HGNC:14687, HGNC:1527, HGNC:1611, HGNC:1641, HGNC:1641, HGNC:17635, HGNC:18629, HGNC:24591, HGNC:29602, HGNC:5344, HGNC:6895, HGNC:6895, HGNC:7035, HGNC:8021, HGNC:8514, HGNC:8823, HGNC:9459, HGNC:9666 DOI:10.3389/fcvm.2020.00052|DOI:10.1016/j.immuni.2019.06.027|XiangM,GrossoRA,TakedaA,PanJ,BekkhusT,BruloisK,DermadiD,NordlingS,VanlandewijckM,JalkanenS,UlvmarMH,ButcherEC|ASingle-CellTranscriptionalRoadmapoftheMouseandHumanLymphNodeLymphaticVasculature|FrontCardiovascMed|2020Apr30;7:52|doi:10|3389/fcvm|2020|00052|PMID:32426372;PMCID:PMC7204639||TakedaA,HollménM,DermadiD,PanJ,BruloisKF,KaukonenR,LönnbergT,BoströmP,KoskivuoI,IrjalaH,MiyasakaM,SalmiM,ButcherEC,JalkanenS|Single-CellSurveyofHumanLymphaticsUnveilsMarkedEndothelialCellHeterogeneityandMechanismsofHomingforNeutrophils|Immunity|2019Sep17;513:561-572|e5|doi:10|1016/j|immuni|2019|06|027|Epub2019Aug8|PMID:31402260| +UBERON:0010397 efferent lymphatic vessel Efferent Lymphatics CL:0002138 endothelial cell of lymphatic vessel Lymphatic Endothelial Cell HGNC:11924, HGNC:14687, HGNC:1527, HGNC:1527, HGNC:1611, HGNC:1611, HGNC:29602, HGNC:6895, HGNC:7035, HGNC:8021, HGNC:8021, HGNC:8051, HGNC:8514, HGNC:8823, HGNC:9459, HGNC:9666 DOI:10.3389/fcvm.2020.00052|DOI:10.1016/j.immuni.2019.06.027|XiangM,GrossoRA,TakedaA,PanJ,BekkhusT,BruloisK,DermadiD,NordlingS,VanlandewijckM,JalkanenS,UlvmarMH,ButcherEC|ASingle-CellTranscriptionalRoadmapoftheMouseandHumanLymphNodeLymphaticVasculature|FrontCardiovascMed|2020Apr30;7:52|doi:10|3389/fcvm|2020|00052|PMID:32426372;PMCID:PMC7204639||TakedaA,HollménM,DermadiD,PanJ,BruloisKF,KaukonenR,LönnbergT,BoströmP,KoskivuoI,IrjalaH,MiyasakaM,SalmiM,ButcherEC,JalkanenS|Single-CellSurveyofHumanLymphaticsUnveilsMarkedEndothelialCellHeterogeneityandMechanismsofHomingforNeutrophils|Immunity|2019Sep17;513:561-572|e5|doi:10|1016/j|immuni|2019|06|027|Epub2019Aug8|PMID:31402260| +UBERON:8410075 lymph node paracortical cord Paracortical Cord CL:0002394 CD141-positive myeloid dendritic cell Conventional Dendritic Cell cDC1 HGNC:11784, HGNC:1625, HGNC:1697, HGNC:26705, HGNC:28915, HGNC:500, HGNC:5951, HGNC:6059, HGNC:6152 DOI:10.1016/S0002-94401061694-X|DOI:10.1016/j.immuni.2017.02.019|SummersKL,HockBD,McKenzieJL,HartDN|Phenotypiccharacterizationoffivedendriticcellsubsetsinhumantonsils|AmJPathol|2001Jul;1591:285-95|doi:10|1016/S0002-94401061694-X|PMID:11438475;PMCID:PMC1850402||GranotT,SendaT,CarpenterDJ,MatsuokaN,WeinerJ,GordonCL,MironM,KumarBV,GriesemerA,HoSH,LernerH,ThomeJJC,ConnorsT,ReizisB,FarberDL|DendriticCellsDisplaySubsetandTissue-SpecificMaturationDynamicsoverHumanLife|Immunity|2017Mar21;463:504-515|doi:10|1016/j|immuni|2017|02|019|PMID:28329707;PMCID:PMC5415308| +UBERON:8410067 lymph node interfollicular cortex Interfollicular Cortex CL:0002399 CD1c-positive myeloid dendritic cell Conventional Dendritic Cell cDC2 HGNC:1636, HGNC:1636, HGNC:16916, HGNC:1697, HGNC:1705, HGNC:6152, HGNC:9662 DOI:10.1038/s41423-020-0511-y|DOI:10.1016/S0002-94401061694-X|DOI:10.1016/j.immuni.2017.02.019|ShinJY,WangCY,LinCC,ChuCL|Arecentlydescribedtype2conventionaldendriticcellcDC2subsetmediatesinflammation|CellMolImmunol|2020Dec;1712:1215-1217|doi:10|1038/s41423-020-0511-y|Epub2020Jul30|PMID:32732988;PMCID:PMC7785008||SummersKL,HockBD,McKenzieJL,HartDN|Phenotypiccharacterizationoffivedendriticcellsubsetsinhumantonsils|AmJPathol|2001Jul;1591:285-95|doi:10|1016/S0002-94401061694-X|PMID:11438475;PMCID:PMC1850402||GranotT,SendaT,CarpenterDJ,MatsuokaN,WeinerJ,GordonCL,MironM,KumarBV,GriesemerA,HoSH,LernerH,ThomeJJC,ConnorsT,ReizisB,FarberDL|DendriticCellsDisplaySubsetandTissue-SpecificMaturationDynamicsoverHumanLife|Immunity|2017Mar21;463:504-515|doi:10|1016/j|immuni|2017|02|019|PMID:28329707;PMCID:PMC5415308 +UBERON:0005463 subcapsular sinus of lymph node Subcapsular Sinus CL:0009103 ymph node marginal reticular cell Marginal Reticular Cell HGNC:10639, HGNC:10639, HGNC:11926, HGNC:12692, HGNC:130, HGNC:2770, HGNC:29602, HGNC:3357, HGNC:8823 DOI:10.1016/j.ajpath.2010.12.039|DOI:10.3389/fimmu.2011.00035|DOI:10.1016/j.jcyt.2017.01.010|LinkA,HardieDL,FavreS,BritschgiMR,AdamsDH,SixtM,CysterJG,BuckleyCD,LutherSA|AssociationofT-zonereticularnetworksandconduitswithectopiclymphoidtissuesinmiceandhumans|AmJPathol|2011Apr;1784:1662-75|doi:10|1016/j|ajpath|2010|12|039|PMID:21435450;PMCID:PMC3070229||FletcherAL,MalhotraD,ActonSE,Lukacs-KornekV,Bellemare-PelletierA,CurryM,ArmantM,TurleySJ|Reproducibleisolationoflymphnodestromalcellsrevealssite-dependentdifferencesinfibroblasticreticularcells|FrontImmunol|2011Sep12;2:35|doi:10|3389/fimmu|2011|00035|PMID:22566825;PMCID:PMC3342056||ValenciaJ,JiménezE,MartínezVG,DelAmoBG,HidalgoL,EntrenaA,Fernández-SevillaLM,DelRíoF,VarasA,VicenteÁ,SacedónR|Characterizationofhumanfibroblasticreticularcellsaspotentialimmunotherapeutictools|Cytotherapy|2017May;195:640-653|doi:10|1016/j|jcyt|2017|01|010|Epub2017Mar2|PMID:28262465| +UBERON:8410053 ymph node germinal center dark zone Dark Zone CL:0009104 B cell zone reticular cell B Cell Zone Reticular Cell HGNC:10672, HGNC:10672, HGNC:11926, HGNC:12692, HGNC:130, HGNC:2770, HGNC:29602, HGNC:8823 NoDOI|DOI:10.1080/01926230600867727|Willard-MackCL|Normalstructure,function,andhistologyoflymphnodes|ToxicolPathol|2006;345:409-24|doi:10|1080/01926230600867727|PMID:17067937| +UBERON:8410074 lymph node paracortical sinus Paracortical Sinus CL:0009105 T cell zone reticular cell T Cell Zone Reticular Cell HGNC:10617, HGNC:10617, HGNC:10620, HGNC:10620, HGNC:12692, HGNC:130, HGNC:2770, HGNC:29602, HGNC:6023, HGNC:8823 DOI:10.1016/j.ajpath.2010.12.039|DOI:10.3389/fimmu.2011.00035|DOI:10.1016/j.jcyt.2017.01.010|LinkA,HardieDL,FavreS,BritschgiMR,AdamsDH,SixtM,CysterJG,BuckleyCD,LutherSA|AssociationofT-zonereticularnetworksandconduitswithectopiclymphoidtissuesinmiceandhumans|AmJPathol|2011Apr;1784:1662-75|doi:10|1016/j|ajpath|2010|12|039|PMID:21435450;PMCID:PMC3070229||FletcherAL,MalhotraD,ActonSE,Lukacs-KornekV,Bellemare-PelletierA,CurryM,ArmantM,TurleySJ|Reproducibleisolationoflymphnodestromalcellsrevealssite-dependentdifferencesinfibroblasticreticularcells|FrontImmunol|2011Sep12;2:35|doi:10|3389/fimmu|2011|00035|PMID:22566825;PMCID:PMC3342056||ValenciaJ,JiménezE,MartínezVG,DelAmoBG,HidalgoL,EntrenaA,Fernández-SevillaLM,DelRíoF,VarasA,VicenteÁ,SacedónR|Characterizationofhumanfibroblasticreticularcellsaspotentialimmunotherapeutictools|Cytotherapy|2017May;195:640-653|doi:10|1016/j|jcyt|2017|01|010|Epub2017Mar2|PMID:28262465| +UBERON:8410067 lymph node interfollicular cortex Interfollicular Cortex CL:0009105 T cell zone reticular cell T Cell Zone Reticular Cell HGNC:10617, HGNC:10617, HGNC:10620, HGNC:10620, HGNC:12692, HGNC:130, HGNC:2770, HGNC:29602, HGNC:6023, HGNC:8823 DOI:10.1016/j.ajpath.2010.12.039|DOI:10.3389/fimmu.2011.00035|DOI:10.1016/j.jcyt.2017.01.010|LinkA,HardieDL,FavreS,BritschgiMR,AdamsDH,SixtM,CysterJG,BuckleyCD,LutherSA|AssociationofT-zonereticularnetworksandconduitswithectopiclymphoidtissuesinmiceandhumans|AmJPathol|2011Apr;1784:1662-75|doi:10|1016/j|ajpath|2010|12|039|PMID:21435450;PMCID:PMC3070229||FletcherAL,MalhotraD,ActonSE,Lukacs-KornekV,Bellemare-PelletierA,CurryM,ArmantM,TurleySJ|Reproducibleisolationoflymphnodestromalcellsrevealssite-dependentdifferencesinfibroblasticreticularcells|FrontImmunol|2011Sep12;2:35|doi:10|3389/fimmu|2011|00035|PMID:22566825;PMCID:PMC3342056||ValenciaJ,JiménezE,MartínezVG,DelAmoBG,HidalgoL,EntrenaA,Fernández-SevillaLM,DelRíoF,VarasA,VicenteÁ,SacedónR|Characterizationofhumanfibroblasticreticularcellsaspotentialimmunotherapeutictools|Cytotherapy|2017May;195:640-653|doi:10|1016/j|jcyt|2017|01|010|Epub2017Mar2|PMID:28262465| +UBERON:0009745 lymph node medullary cord Medullary Cord CL:0009106 medullary reticular cell Medullary Reticular Cell HGNC:10672, HGNC:10672, HGNC:11926, HGNC:12692, HGNC:130, HGNC:2770, HGNC:29602, HGNC:8823 DOI:10.1016/j.ajpath.2010.12.039|DOI:10.3389/fimmu.2011.00035.|DOI:10.1016/j.jcyt.2017.01.010|LinkA,HardieDL,FavreS,BritschgiMR,AdamsDH,SixtM,CysterJG,BuckleyCD,LutherSA|AssociationofT-zonereticularnetworksandconduitswithectopiclymphoidtissuesinmiceandhumans|AmJPathol|2011Apr;1784:1662-75|doi:10|1016/j|ajpath|2010|12|039|PMID:21435450;PMCID:PMC3070229||FletcherAL,MalhotraD,ActonSE,Lukacs-KornekV,Bellemare-PelletierA,CurryM,ArmantM,TurleySJ|Reproducibleisolationoflymphnodestromalcellsrevealssite-dependentdifferencesinfibroblasticreticularcells|FrontImmunol|2011Sep12;2:35|doi:10|3389/fimmu|2011|00035|PMID:22566825;PMCID:PMC3342056||ValenciaJ,JiménezE,MartínezVG,DelAmoBG,HidalgoL,EntrenaA,Fernández-SevillaLM,DelRíoF,VarasA,VicenteÁ,SacedónR|Characterizationofhumanfibroblasticreticularcellsaspotentialimmunotherapeutictools|Cytotherapy|2017May;195:640-653|doi:10|1016/j|jcyt|2017|01|010|Epub2017Mar2|PMID:28262465| +UBERON:8410071 subcapsular sinus ceiling Subcapsular sinus ceiling CL:0009107 lymphatic endothelial cell of subcapsular sinus ceiling Lymphatic Endothelial Cell -Subcapsular Sinus Ceiling HGNC:11924, HGNC:14687, HGNC:1527, HGNC:1527, HGNC:1611, HGNC:1611, HGNC:29602, HGNC:6895, HGNC:7035, HGNC:8021, HGNC:8021, HGNC:8051, HGNC:8514, HGNC:8823, HGNC:9459, HGNC:9666 DOI:10.3389/fcvm.2020.00052|DOI:10.1016/j.immuni.2019.06.027|XiangM,GrossoRA,TakedaA,PanJ,BekkhusT,BruloisK,DermadiD,NordlingS,VanlandewijckM,JalkanenS,UlvmarMH,ButcherEC|ASingle-CellTranscriptionalRoadmapoftheMouseandHumanLymphNodeLymphaticVasculature|FrontCardiovascMed|2020Apr30;7:52|doi:10|3389/fcvm|2020|00052|PMID:32426372;PMCID:PMC7204639||TakedaA,HollménM,DermadiD,PanJ,BruloisKF,KaukonenR,LönnbergT,BoströmP,KoskivuoI,IrjalaH,MiyasakaM,SalmiM,ButcherEC,JalkanenS|Single-CellSurveyofHumanLymphaticsUnveilsMarkedEndothelialCellHeterogeneityandMechanismsofHomingforNeutrophils|Immunity|2019Sep17;513:561-572|e5|doi:10|1016/j|immuni|2019|06|027|Epub2019Aug8|PMID:31402260| +UBERON:8410072 subcapsular sinus floor Subcapsular sinus floor CL:0009108 lymphatic endothelial cell of subcapsular sinus floor Lymphatic Endothelial Cell-Subcapsular Sinus Floor HGNC:10619, HGNC:10642, HGNC:11801, HGNC:11924, HGNC:11924, HGNC:14687, HGNC:1527, HGNC:1611, HGNC:1709, HGNC:17635, HGNC:29602, HGNC:4035, HGNC:4602, HGNC:5344, HGNC:6740, HGNC:6895, HGNC:6895, HGNC:7035, HGNC:8021, HGNC:8514, HGNC:8823, HGNC:9459, HGNC:9666 DOI:10.3389/fcvm.2020.00052|DOI:10.1016/j.immuni.2019.06.027|XiangM,GrossoRA,TakedaA,PanJ,BekkhusT,BruloisK,DermadiD,NordlingS,VanlandewijckM,JalkanenS,UlvmarMH,ButcherEC|ASingle-CellTranscriptionalRoadmapoftheMouseandHumanLymphNodeLymphaticVasculature|FrontCardiovascMed|2020Apr30;7:52|doi:10|3389/fcvm|2020|00052|PMID:32426372;PMCID:PMC7204639||TakedaA,HollménM,DermadiD,PanJ,BruloisKF,KaukonenR,LönnbergT,BoströmP,KoskivuoI,IrjalaH,MiyasakaM,SalmiM,ButcherEC,JalkanenS|Single-CellSurveyofHumanLymphaticsUnveilsMarkedEndothelialCellHeterogeneityandMechanismsofHomingforNeutrophils|Immunity|2019Sep17;513:561-572|e5|doi:10|1016/j|immuni|2019|06|027|Epub2019Aug8|PMID:31402260| +UBERON:8410032 trabecular sinus of lymph node Trabecular sinus CL:0009109 lymphatic endothelial cell of trabecula Lymphatic Endothelial Cell-Trabeculae HGNC:11924, HGNC:14687, HGNC:14687, HGNC:1527, HGNC:1611, HGNC:1611, HGNC:29602, HGNC:6895, HGNC:7035, HGNC:7035, HGNC:8021, HGNC:8021, HGNC:8514, HGNC:8823, HGNC:9459, HGNC:9666 DOI:10.3389/fcvm.2020.00052|DOI:10.1016/j.immuni.2019.06.027|XiangM,GrossoRA,TakedaA,PanJ,BekkhusT,BruloisK,DermadiD,NordlingS,VanlandewijckM,JalkanenS,UlvmarMH,ButcherEC|ASingle-CellTranscriptionalRoadmapoftheMouseandHumanLymphNodeLymphaticVasculature|FrontCardiovascMed|2020Apr30;7:52|doi:10|3389/fcvm|2020|00052|PMID:32426372;PMCID:PMC7204639||TakedaA,HollménM,DermadiD,PanJ,BruloisKF,KaukonenR,LönnbergT,BoströmP,KoskivuoI,IrjalaH,MiyasakaM,SalmiM,ButcherEC,JalkanenS|Single-CellSurveyofHumanLymphaticsUnveilsMarkedEndothelialCellHeterogeneityandMechanismsofHomingforNeutrophils|Immunity|2019Sep17;513:561-572|e5|doi:10|1016/j|immuni|2019|06|027|Epub2019Aug8|PMID:31402260| +UBERON:0005463 subcapsular sinus of lymph node Subcapsular Sinus CL:0009110 lymphatic endothelial cell of medulla ceiling Lymphatic Endothelial Cell of Medulla Ceiling HGNC:11924, HGNC:14687, HGNC:14687, HGNC:1527, HGNC:1611, HGNC:1611, HGNC:29602, HGNC:6895, HGNC:7035, HGNC:7035, HGNC:8021, HGNC:8021, HGNC:8514, HGNC:8823, HGNC:9459, HGNC:9666 DOI:10.3389/fcvm.2020.00052|DOI:10.1016/j.immuni.2019.06.027|XiangM,GrossoRA,TakedaA,PanJ,BekkhusT,BruloisK,DermadiD,NordlingS,VanlandewijckM,JalkanenS,UlvmarMH,ButcherEC|ASingle-CellTranscriptionalRoadmapoftheMouseandHumanLymphNodeLymphaticVasculature|FrontCardiovascMed|2020Apr30;7:52|doi:10|3389/fcvm|2020|00052|PMID:32426372;PMCID:PMC7204639||TakedaA,HollménM,DermadiD,PanJ,BruloisKF,KaukonenR,LönnbergT,BoströmP,KoskivuoI,IrjalaH,MiyasakaM,SalmiM,ButcherEC,JalkanenS|Single-CellSurveyofHumanLymphaticsUnveilsMarkedEndothelialCellHeterogeneityandMechanismsofHomingforNeutrophils|Immunity|2019Sep17;513:561-572|e5|doi:10|1016/j|immuni|2019|06|027|Epub2019Aug8|PMID:31402260| +UBERON:8410052 lymph node germinal center light zone Light Zone CL:0009111 centrocyte Centrocyte HGNC:1001, HGNC:1001, HGNC:1060, HGNC:11922, HGNC:1633, HGNC:1667, HGNC:1703, HGNC:2336, HGNC:5480, HGNC:7107, HGNC:7107, HGNC:7154, HGNC:7315, HGNC:7315, HGNC:990 NoDOI|DOI:10.1182/blood-2012-03-415380|NoDOI|VictoraGD,Dominguez-SolaD,HolmesAB,DeroubaixS,Dalla-FaveraR,NussenzweigMC|IdentificationofhumangerminalcenterlightanddarkzonecellsandtheirrelationshiptohumanB-celllymphomas|Blood|2012Sep13;12011:2240-8|doi:10|1182/blood-2012-03-415380|Epub2012Jun26|Erratumin:Blood|2015Sep3;12610:1262|PMID:22740445;PMCID:PMC3447782| +UBERON:8410053 ymph node germinal center dark zone Dark Zone CL:0009112 centroblast Centroblast HGNC:1001, HGNC:1001, HGNC:11922, HGNC:11922, HGNC:13203, HGNC:1633, HGNC:1633, HGNC:1667, HGNC:1697, HGNC:2561, HGNC:2561, HGNC:5480, HGNC:6642, HGNC:7107, HGNC:7107, HGNC:7154, HGNC:7315, HGNC:7315, HGNC:990 NODOI|NoDOI|DOI:10.1182/blood-2012-03-415380|HsuSM,JaffeES|PhenotypicexpressionofB-lymphocytes|2|Immunoglobulinexpressionofgerminalcentercells|AmJPathol|1984Mar;1143:396-402|PMID:6364822;PMCID:PMC1900414||VictoraGD,Dominguez-SolaD,HolmesAB,DeroubaixS,Dalla-FaveraR,NussenzweigMC|IdentificationofhumangerminalcenterlightanddarkzonecellsandtheirrelationshiptohumanB-celllymphomas|Blood|2012Sep13;12011:2240-8|doi:10|1182/blood-2012-03-415380|Epub2012Jun26|Erratumin:Blood|2015Sep3;12610:1262|PMID:22740445;PMCID:PMC3447782| +UBERON:8410067 lymph node interfollicular cortex Interfollicular Cortex CL:0009113 T follicular regulatory cell T Follicular Regulatory Cell HGNC:1060, HGNC:1673, HGNC:1675, HGNC:1678, HGNC:1678, HGNC:6008, HGNC:6008, HGNC:6106, HGNC:6106 DOI:10.1172/JCI200422325|DOI:10.1084/jem.20171940|LimHW,HillsamerP,KimCH|RegulatoryTcellscanmigratetofolliclesuponTcellactivationandsuppressGC-ThcellsandGC-Thcell-drivenBcellresponses|JClinInvest|2004Dec;11411:1640-9|doi:10|1172/JCI22325|Erratumin:JClinInvest|2005Jan;1151:195|PMID:15578096;PMCID:PMC529283||SayinI,RadtkeAJ,VellaLA,JinW,WherryEJ,BuggertM,BettsMR,HeratiRS,GermainRN,CanadayDH|SpatialdistributionandfunctionofTfollicularregulatorycellsinhumanlymphnodes|JExpMed|2018Jun4;2156:1531-1542|doi:10|1084/jem|20171940|Epub2018May16|PMID:29769249;PMCID:PMC5987920| +UBERON:8410052 lymph node germinal center light zone Light Zone CL:0009113 T follicular regulatory cell T Follicular Regulatory Cell HGNC:1060, HGNC:1673, HGNC:1675, HGNC:1678, HGNC:1678, HGNC:6008, HGNC:6008, HGNC:6106, HGNC:6106 DOI:10.1172/JCI200422325|DOI:10.1084/jem.20171940|LimHW,HillsamerP,KimCH|RegulatoryTcellscanmigratetofolliclesuponTcellactivationandsuppressGC-ThcellsandGC-Thcell-drivenBcellresponses|JClinInvest|2004Dec;11411:1640-9|doi:10|1172/JCI22325|Erratumin:JClinInvest|2005Jan;1151:195|PMID:15578096;PMCID:PMC529283||SayinI,RadtkeAJ,VellaLA,JinW,WherryEJ,BuggertM,BettsMR,HeratiRS,GermainRN,CanadayDH|SpatialdistributionandfunctionofTfollicularregulatorycellsinhumanlymphnodes|JExpMed|2018Jun4;2156:1531-1542|doi:10|1084/jem|20171940|Epub2018May16|PMID:29769249;PMCID:PMC5987920| +UBERON:8410075 lymph node paracortical cord Paracortical Cord CL:0009114 monocytoid B Cell Monocytoid B Cell HGNC:11922, HGNC:13203, HGNC:13203, HGNC:1633, HGNC:1633, HGNC:24692, HGNC:5541 NODOI|DOI:10.1038/s41573-020-00092-2|SteinK,HummelM,KorbjuhnP,FossHD,AnagnostopoulosI,MarafiotiT,SteinH|MonocytoidBcellsaredistinctfromsplenicmarginalzonecellsandcommonlyderivefromunmutatednaiveBcellsandlessfrequentlyfrompostgerminalcenterBcellsbypolyclonaltransformation|Blood|1999Oct15;948:2800-8|PMID:10515883||LeeDSW,RojasOL,GommermanJL|Bcelldepletiontherapiesinautoimmunedisease:advancesandmechanisticinsights|NatRevDrugDiscov|2020Dec15:1–21|doi:10|1038/s41573-020-00092-2|Epubaheadofprint|PMID:33324003;PMCID:PMC7737718| +UBERON:0034729 sympathetic nerve Sympathetic nerve CL:0011103 sympathetic neuron Sympathetic Neuron HGNC:12513, HGNC:12513, HGNC:7656, HGNC:7656 DOI:10.1046/j.1469-7580.1999.19410143.x|PanuncioAL,DeLaPeñaS,GualcoG,ReissenweberN|Adrenergicinnervationinreactivehumanlymphnodes|JAnat|1999Jan;194Pt1Pt1:143-6|doi:10|1046/j|1469-7580|1999|19410143|x|PMID:10227676;PMCID:PMC1467902 +UBERON:0001473 lymphatic vessel Lymphatic Vessels CL:0019017 Lymphatic vessel smooth muscle cell Smooth Muscle Cell HGNC:130, HGNC:130 DOI:10.1038/s41577-020-0281-x|DOI:10.1002/cphy.c180015|JalkanenS,SalmiM|Lymphaticendothelialcellsofthelymphnode|NatRevImmunol|2020Sep;209:566-578|doi:10|1038/s41577-020-0281-x|Epub2020Feb24|PMID:32094869||BreslinJW,YangY,ScallanJP,SweatRS,AdderleySP,MurfeeWL|LymphaticVesselNetworkStructureandPhysiology|ComprPhysiol|2018Dec13;91:207-299|doi:10|1002/cphy|c180015|PMID:30549020;PMCID:PMC6459625| +UBERON:0010397 efferent lymphatic vessel Efferent Lymphatics CL:0019017 lymphatic vessel smooth muscle cell Smooth Muscle Cell HGNC:130, HGNC:130 DOI:10.1038/s41577-020-0281-x|NoDOI|OhtaniO,OhtaniY|Recentdevelopmentsinmorphologyoflymphaticvesselsandlymphnodes|AnnVascDis|2012;52:145-50|doi:10|3400/avd|ra|11|00099|PMID:23555502;PMCID:PMC3595868||Toccanier-PelteMF,SkalliO,KapanciY,GabbianiG|Characterizationofstromalcellswithmyoidfeaturesinlymphnodesandspleeninnormalandpathologicconditions|AmJPathol|1987Oct;1291:109-18|PMID:3310649;PMCID:PMC1899700| diff --git a/logs/ct_loc_markers/Lymph_vasculature_report.tsv b/logs/ct_loc_markers/Lymph_vasculature_report.tsv new file mode 100644 index 000000000..f857158a1 --- /dev/null +++ b/logs/ct_loc_markers/Lymph_vasculature_report.tsv @@ -0,0 +1,14 @@ +Terminal AS/ID Terminal AS/label Terminal AS/user_label Terminal CT/ID Terminal CT/label Terminal CT/user_label Markers References +UBERON:0001631 thoracic duct thoracic duct CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelial cell HGNC:3767 +UBERON:0005435 upper part of cisterna chyli cisterna chyli CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelial cell HGNC:3767 +UBERON:0002508 celiac lymph node celiac lymph node CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelial cell HGNC:3767 +UBERON:0016378 ileocolic lymph node ileocolic lymph node CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelial cell HGNC:3767 +UBERON:0002509 mesenteric lymph node mesenteric lymph node CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelial cell HGNC:3767 +UBERON:0016402 mesocolic lymph node mesocolic lymph node CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelial cell HGNC:3767 +UBERON:0016386 paraaortic lymph node paraaortic lymph node CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelial cell HGNC:3767 +UBERON:0015878 common iliac lymph node common iliac lymph node CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelial cell HGNC:3767 +UBERON:0015880 external iliac lymph node external iliac lymph node CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelial cell HGNC:3767 +UBERON:0009006 deep inguinal lymph node deep inguinal lymph node CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelial cell HGNC:3767 +UBERON:0001543 popliteal lymph node popliteal lymph node CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelial cell HGNC:3767 +UBERON:0015881 internal iliac lymph node internal iliac lymph node CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelial cell HGNC:3767 +UBERON:0035279 supraclavicular lymph node supraclavicular lymph node CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelial cell HGNC:3767 diff --git a/logs/ct_loc_markers/Pancreas_report.tsv b/logs/ct_loc_markers/Pancreas_report.tsv new file mode 100644 index 000000000..347cefb04 --- /dev/null +++ b/logs/ct_loc_markers/Pancreas_report.tsv @@ -0,0 +1,31 @@ +Terminal AS/ID Terminal AS/label Terminal AS/user_label Terminal CT/ID Terminal CT/label Terminal CT/user_label Markers References +UBERON:0000006 islet of Langerhans Islet of Langerhans CL:0000084 T cell T lymphocyte HGNC:1674, HGNC:1678, HGNC:1706, HGNC:9666 +UBERON:0000017 exocrine pancreas Exocrine pancreas CL:0000084 T cell T lymphocyte HGNC:1674, HGNC:1678, HGNC:1706, HGNC:9666 +UBERON:0018234 stroma of pancreas Stroma of pancreas CL:0000136 fat cell Adipocyte HGNC:3559, HGNC:6621, HGNC:9155 +UBERON:0012271 major duodenal papilla Major duodenal papilla CL:0000146 simple columnar epithelial cell Simple columnar epithelial cell HGNC:1884, HGNC:6107, HGNC:6436, HGNC:6445 +UBERON:0012271 major duodenal papilla Major duodenal papilla CL:0000146 simple columnar epithelial cell Simple columnar epithelial cell HGNC:6107, HGNC:6436 +UBERON:0000006 islet of Langerhans Islet of Langerhans CL:0000169 type B pancreatic cell Beta cell HGNC:11506, HGNC:12513, HGNC:1929, HGNC:23145, HGNC:3365, HGNC:6081, HGNC:6107, HGNC:7839 +UBERON:0000006 islet of Langerhans Islet of Langerhans CL:0000171 pancreatic A cell Alpha cell HGNC:11506, HGNC:12513, HGNC:14359, HGNC:18060, HGNC:1929, HGNC:4191 +UBERON:0000006 islet of Langerhans Islet of Langerhans CL:0000173 pancreatic D cell Delta cell HGNC:11329, HGNC:11506, HGNC:12513, HGNC:1929, HGNC:4901 +UBERON:0004915 sphincter of hepatopancreatic ampulla Hepatopancreatic sphincter (Sphincter of Oddi) CL:0000192 smooth muscle cell Smooth muscle cell HGNC:130 +UBERON:0005429 dorsal pancreatic duct Papilla of Santorini CL:0000192 smooth muscle cell Smooth muscle cell HGNC:130 +UBERON:0000006 islet of Langerhans Islet of Langerhans CL:0000235 macrophage Macrophage HGNC:1631, HGNC:1693, HGNC:352, HGNC:7228 +UBERON:0000006 islet of Langerhans Islet of Langerhans CL:0000235 macrophage Macrophage HGNC:1693, HGNC:352 +UBERON:0000017 exocrine pancreas Exocrine pancreas CL:0000235 macrophage Macrophage HGNC:1631, HGNC:1693, HGNC:352, HGNC:7228 +UBERON:0000006 islet of Langerhans Islet of Langerhans CL:0000236 B cell B lymphocyte HGNC:1633, HGNC:7315, HGNC:9666 +UBERON:0000017 exocrine pancreas Exocrine pancreas CL:0000236 B cell B lymphocyte HGNC:1633, HGNC:7315, HGNC:9666 +UBERON:0000006 islet of Langerhans Islet of Langerhans CL:0000451 dendritic cell Dendritic cell HGNC:6152 +UBERON:0000017 exocrine pancreas Exocrine pancreas CL:0000451 dendritic cell Dendritic cell HGNC:6152 +UBERON:0000006 islet of Langerhans Islet of Langerhans CL:0000509 gastrin secreting cell Gastrin cell HGNC:11506, HGNC:1929, HGNC:4164 +UBERON:0014726 intercalated duct of pancreas Intercalated duct CL:0000577 type EC enteroendocrine cell Enterochromaffin cell HGNC:11506, HGNC:12008, HGNC:1929 +UBERON:0000017 exocrine pancreas Exocrine pancreas CL:0000775 neutrophil Neutrophil HGNC:3309, HGNC:7218 +UBERON:0001263 Pancreatic acinus Pancreatic acinus CL:0002064 pancreatic acinar cell Acinar cell HGNC:15944, HGNC:2521, HGNC:477, HGNC:6430, HGNC:6446, HGNC:9475 +UBERON:0014726 intercalated duct of pancreas Intercalated duct CL:0002079 pancreatic ductal cell Ductal cell HGNC:14188, HGNC:17890 +UBERON:0014726 intercalated duct of pancreas Intercalated duct CL:0002080 pancreatic centro-acinar cell Centroacinar cell HGNC:1373 +UBERON:0000006 islet of Langerhans Islet of Langerhans CL:0002275 pancreatic PP cell PP cell HGNC:11506, HGNC:11506, HGNC:12513, HGNC:1929, HGNC:1929, HGNC:9327 +UBERON:0018234 stroma of pancreas Stroma of pancreas CL:0002410 pancreatic stellate cell Pancreatic stellate cell HGNC:8804 +UBERON:0018234 stroma of pancreas Stroma of pancreas CL:0002410 pancreatic stellate cell Pancreatic stellate cell HGNC:130, HGNC:5129, HGNC:5130, HGNC:6482 +UBERON:0000006 islet of Langerhans Islet of Langerhans CL:0005019 pancreatic epsilon cell Epsilon cell HGNC:11506, HGNC:11506, HGNC:12513, HGNC:18129, HGNC:1929, HGNC:1929 +UBERON:0014726 intercalated duct of pancreas Intercalated duct CL:1000322 pancreatic goblet cell Pancreatic goblet cell HGNC:7512 +UBERON:0014726 intercalated duct of pancreas Intercalated duct CL:1001433 epithelial cell of exocrine pancreas Ductal epithelial cell HGNC:6436 +UBERON:0004913 hepatopancreatic ampulla Hepatopancreatic ampulla CL:1001433 epithelial cell of exocrine pancreas Ductal epithelial cell HGNC:6436 diff --git a/logs/ct_loc_markers/Peripheral_nervous_system_report.tsv b/logs/ct_loc_markers/Peripheral_nervous_system_report.tsv new file mode 100644 index 000000000..4d19cf5d2 --- /dev/null +++ b/logs/ct_loc_markers/Peripheral_nervous_system_report.tsv @@ -0,0 +1,29 @@ +Terminal AS/ID Terminal AS/label Terminal AS/user_label Terminal CT/ID Terminal CT/label Terminal CT/user_label Markers References +UBERON:0001021 nerve nerve CL:0000540 neuron neuron HGNC:3353 +UBERON:0001492 radial nerve radial nerve CL:0000540 neuron neuron HGNC:3353 +UBERON:0003724 musculocutaneous nerve musculocutaneous nerve CL:0000540 neuron neuron HGNC:3353 +UBERON:0001493 axillary nerve axillary nerve CL:0000540 neuron neuron HGNC:3353 +UBERON:0008833 great auricular nerve great auricular nerve CL:0000540 neuron neuron HGNC:3353 +UBERON:0001884 phrenic nerve phrenic nerve CL:0000540 neuron neuron HGNC:3353 +UBERON:0001650 hypoglossal nerve hypoglossal nerve CL:0000540 neuron neuron HGNC:3353 +UBERON:0001759 vagus nerve vagus nerve CL:0000540 neuron neuron HGNC:3353 +UBERON:0001649 glossopharyngeal nerve glossopharyngeal nerve CL:0000540 neuron neuron HGNC:3353 +UBERON:0001648 vestibulocochlear nerve vestibulocochlear nerve CL:0000540 neuron neuron HGNC:3353 +UBERON:0001647 facial nerve facial nerve CL:0000540 neuron neuron HGNC:3353 +UBERON:0001646 abducens nerve abducens nerve CL:0000540 neuron neuron HGNC:3353 +UBERON:0000348 ophthalmic nerve ophthalmic nerve CL:0000540 neuron neuron HGNC:3353 +UBERON:0000377 maxillary nerve maxillary nerve CL:0000540 neuron neuron HGNC:3353 +UBERON:0000375 mandibular nerve mandibular nerve CL:0000540 neuron neuron HGNC:3353 +UBERON:0001645 trigeminal nerve trigeminal nerve CL:0000540 neuron neuron HGNC:3353 +UBERON:0001644 trochlear nerve trochlear nerve CL:0000540 neuron neuron HGNC:3353 +UBERON:0001643 oculomotor nerve oculomotor nerve CL:0000540 neuron neuron HGNC:3353 +UBERON:0001579 olfactory nerve olfactory nerve CL:0000540 neuron neuron HGNC:3353 +UBERON:0001785 cranial nerve cranial nerve CL:0000540 neuron neuron HGNC:3353 +UBERON:0035768 coccygeal nerve plexus coccygeal plexus CL:0000540 neuron neuron HGNC:3353 +UBERON:0034986 sacral nerve plexus sacral plexus CL:0000540 neuron neuron HGNC:3353 +UBERON:0034987 lumbar nerve plexus lumbar plexus CL:0000540 neuron neuron HGNC:3353 +UBERON:0001814 brachial nerve plexus brachial plexus CL:0000540 neuron neuron HGNC:3353 +UBERON:0003725 cervical nerve plexus cervical plexus CL:0000540 neuron neuron HGNC:3353 +UBERON:0001780 spinal nerve spinal nerve CL:0000540 neuron neuron HGNC:3353 +UBERON:0001322 sciatic nerve sciatic nerve CL:0000540 neuron neuron HGNC:3353 +UBERON:0011390 pudendal nerve pudendal nerve CL:0000540 neuron neuron HGNC:3353 diff --git a/logs/ct_loc_markers/Placenta_report.tsv b/logs/ct_loc_markers/Placenta_report.tsv new file mode 100644 index 000000000..679ee999d --- /dev/null +++ b/logs/ct_loc_markers/Placenta_report.tsv @@ -0,0 +1,30 @@ +Terminal AS/ID Terminal AS/label Terminal AS/user_label Terminal CT/ID Terminal CT/label Terminal CT/user_label Markers References +UBERON:0002066 umbilical vein umbilical vein CL:0000071 blood vessel endothelial cell vascular endothelial cells HGNC:12726, HGNC:6934, HGNC:8823 PMID:8804361|doi:10.1155/2021/6662201|doi:10.1093/humrep/dem265|doi:10.1290/1071-2690(2001)037<0408:IOECFH>2.0.CO;2|DOI:10.1093/oxfordjournals.humrep.a136040|doi.org/10.1371/journal.pone.0169849|doi.org/10.1371/journal.pone.0169849|PMID:8804361 +UBERON:0001310 umbilical artery umbilical arteries CL:0000071 blood vessel endothelial cell vascular endothelial cells HGNC:12726, HGNC:6934, HGNC:8823 PMID:8804361|doi:10.1155/2021/6662201|doi:10.1093/humrep/dem265|doi:10.1290/1071-2690(2001)037<0408:IOECFH>2.0.CO;2|DOI:10.1093/oxfordjournals.humrep.a136040|doi.org/10.1371/journal.pone.0169849|doi.org/10.1371/journal.pone.0169849|PMID:8804361 +UBERON:0007106 chorionic villus chorionic villous CL:0000071 blood vessel endothelial cell vascular endothelial cells HGNC:12726, HGNC:6934, HGNC:8823 PMID:8804361|doi:10.1155/2021/6662201|doi:10.1093/humrep/dem265|doi:10.1290/1071-2690(2001)037<0408:IOECFH>2.0.CO;2|DOI:10.1093/oxfordjournals.humrep.a136040|doi.org/10.1371/journal.pone.0169849|doi.org/10.1371/journal.pone.0169849|PMID:8804361 +UBERON:0004027 chorionic plate chorionic plate CL:0000071 blood vessel endothelial cell vascular endothelial cells HGNC:12726, HGNC:6934, HGNC:8823 PMID:8804361|doi:10.1155/2021/6662201|doi:10.1093/humrep/dem265|doi:10.1290/1071-2690(2001)037<0408:IOECFH>2.0.CO;2|DOI:10.1093/oxfordjournals.humrep.a136040|doi.org/10.1371/journal.pone.0169849|doi.org/10.1371/journal.pone.0169849|PMID:8804361 +UBERON:0002337 endometrial stroma endometrial stroma CL:0000236 B cell B cell HGNC:10658, HGNC:1681, HGNC:4947 doi:10.3390/cells1041061|doi:10.1016/j.jcyt.2017.03.001|doi:10.1186/s13287-017-0757-1|DOI:10.1095/biolreprod51.4.739|DOI:10.1095/biolreprod.108.075226|doi.org/10.1182/blood.V74.2.751.751|doi:10.1091/mbc.1.1.27|doi:10.1093/intimm/7.7.1087 +UBERON:0002066 umbilical vein umbilical vein CL:0000359 vascular associated smooth muscle cell vascular smooth muscle cells HGNC:130, HGNC:2770 DOI:10.1016/0014-4800(90)90037-e|DOI:10.1007/s00441-003-0745-x|doi:10.1038/ng.2007.6.|DOI:10.1007/s00441-003-0745-x +UBERON:0001310 umbilical artery umbilical arteries CL:0000359 vascular associated smooth muscle cell vascular smooth muscle cells HGNC:130, HGNC:2770 DOI:10.1016/0014-4800(90)90037-e|DOI:10.1007/s00441-003-0745-x|doi:10.1038/ng.2007.6.|DOI:10.1007/s00441-003-0745-x +UBERON:0004027 chorionic plate chorionic plate CL:0000359 vascular associated smooth muscle cell vascular smooth muscle cells HGNC:130, HGNC:2770 DOI:10.1016/0014-4800(90)90037-e|DOI:10.1007/s00441-003-0745-x|doi:10.1038/ng.2007.6.|DOI:10.1007/s00441-003-0745-x +UBERON:0007106 chorionic villus chorionic villous CL:0000359 vascular associated smooth muscle cell vascular smooth muscle cells HGNC:130, HGNC:2770 DOI:10.1016/0014-4800(90)90037-e|DOI:10.1007/s00441-003-0745-x|doi:10.1038/ng.2007.6.|DOI:10.1007/s00441-003-0745-x +UBERON:0000088 trophoblast chorionic ectoderm (from chorion membrane) CL:0000523 mononuclear cytotrophoblast cell cytotrophoblast (CTB) HGNC:15979, HGNC:3236, HGNC:6445 doi.org/10.1016/S0143-4004(05)80438-2|doi.org/10.1016/S0143-4004(05)80438-2|doi:10.1016/j.ajpath.2014.08.006|DOI:10.1016/j.jim.2003.03.001|DOI:10.1053/plac.2000.0559|doi.org/10.1095/biolreprod.106.055244 +UBERON:0000088 trophoblast chorionic ectoderm (from chorionic plate) CL:0000525 syncytiotrophoblast cell syncytiotrophoblast (STB) HGNC:1886, HGNC:2440, HGNC:3236, HGNC:6445, HGNC:9521 DOI:10.1146/annurev.bi.50.070181.002341|doi:10.1056/NEJM197007232830408|doi:10.1007/BF01628222|DOI:10.1016/j.jim.2003.03.001|DOI:10.1053/plac.2000.0559|doi.org/10.1095/biolreprod.106.055244|doi.org/10.1016/S0143-4004(05)80438-2|doi.org/10.1016/S0143-4004(05)80438-2 +UBERON:0002066 umbilical vein umbilical vein CL:0000669 pericyte pericytes HGNC:130, HGNC:2466, HGNC:2770, HGNC:8804 DOI:10.1016/0014-4800(90)90037-e|DOI:10.1007/s00441-003-0745-x|doi:10.1038/ng.2007.6.|DOI:10.1007/s00441-003-0745-x|DOI:10.1007/s00441-003-0745-x|DOI:10.1007/s00441-003-0745-x +UBERON:0001310 umbilical artery umbilical arteries CL:0000669 pericyte cell pericytes HGNC:130, HGNC:2466, HGNC:2770, HGNC:8804 DOI:10.1016/0014-4800(90)90037-e|DOI:10.1007/s00441-003-0745-x|doi:10.1038/ng.2007.6.|DOI:10.1007/s00441-003-0745-x|DOI:10.1007/s00441-003-0745-x|DOI:10.1007/s00441-003-0745-x +UBERON:0007106 chorionic villus chorionic villous CL:0000669 pericyte pericytes HGNC:130, HGNC:2466, HGNC:2770, HGNC:8804 DOI:10.1016/0014-4800(90)90037-e|DOI:10.1007/s00441-003-0745-x|doi:10.1038/ng.2007.6.|DOI:10.1007/s00441-003-0745-x|DOI:10.1007/s00441-003-0745-x|DOI:10.1007/s00441-003-0745-x +UBERON:0004027 chorionic plate chorionic plate CL:0000669 pericyte pericytes HGNC:130, HGNC:2466, HGNC:2770, HGNC:8804 DOI:10.1016/0014-4800(90)90037-e|DOI:10.1007/s00441-003-0745-x|doi:10.1038/ng.2007.6.|DOI:10.1007/s00441-003-0745-x|DOI:10.1007/s00441-003-0745-x|DOI:10.1007/s00441-003-0745-x +UBERON:0002337 endometrial stroma endometrial stroma CL:0000815 regulatory T cell regulatory T cell HGNC:6106 DOI:10.1038/ni904 +UBERON:0002337 endometrial stroma endometrial stroma CL:0000910 cytotoxic T cell cytotoxic T cell HGNC:1653, HGNC:1706 PMID:1672332|PMID:7579453|PMID:1672332|PMID:7579453 +UBERON:0002450 decidua decidua CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelial cell HGNC:29602, HGNC:8823 doi.org/10.1371/journal.pone.0169849|doi.org/10.1371/journal.pone.0169849|doi.org/10.1371/journal.pone.0169849 +UBERON:0002337 endometrial stroma endometrial stroma CL:0002255 stromal cell of endometrium endometrial stromal cell HGNC:11801, HGNC:1681, HGNC:3349, HGNC:7154 doi:10.3390/cells1041061|doi:10.1016/j.jcyt.2017.03.001|doi:10.1186/s13287-017-0757-1|DOI:10.1095/biolreprod51.4.739|DOI:10.1095/biolreprod.108.075226|doi.org/10.1182/blood.V74.2.751.751|doi:10.3390/cells1041061|doi:10.5966/sctm.2015-0022|doi:10.3346/jkms.2012.27.8.857|doi:10.1016/j.jcyt.2017.03.001|doi:10.1186/s13287-017-0757-1|DOI:10.1093/humrep/den051|DOI:10.1095/biolreprod.108.075226|doi:10.3390/cells1041061|doi:10.5966/sctm.2015-0022|doi:10.3346/jkms.2012.27.8.857|doi:10.1016/j.jcyt.2017.03.001|doi:10.1186/s13287-017-0757-1|DOI:10.1095/biolreprod.108.075226|doi:10.1016/s1472-6483(10)61745-2 +UBERON:0003254 amniotic ectoderm amniotic ectoderm CL:0002536 epithelial cell of amnion amnion epithelial cell (AEC) HGNC:11195, HGNC:6445, HGNC:9221 DOI:10.1016/j.jim.2003.03.001|DOI:10.1053/plac.2000.0559|doi.org/10.1095/biolreprod.106.055244|doi:10.1016/j.jri.2009.02.007|doi:10.1371/journal.pone.0146082|doi:10.1016/j.jri.2009.02.007|doi:10.1371/journal.pone.0146082|doi:10.1016/j.jri.2009.02.007|doi:10.17772/gp/1673|doi:10.1371/journal.pone.0146082 +UBERON:0003265 chorionic mesenchyme chorionic mesoderm CL:0002541 chorionic membrane mesenchymal stem cell chorionic mesenchymal stromal cell (CMSC) HGNC:11801, HGNC:1681, HGNC:3349, HGNC:7656, HGNC:8021 doi:10.3390/cells1041061|doi:10.1016/j.jcyt.2017.03.001|doi:10.1186/s13287-017-0757-1|DOI:10.1095/biolreprod51.4.739|DOI:10.1095/biolreprod.108.075226|doi.org/10.1182/blood.V74.2.751.751|doi:10.3390/cells1041061|doi:10.5966/sctm.2015-0022|doi:10.3346/jkms.2012.27.8.857|doi:10.1016/j.jcyt.2017.03.001|doi:10.1186/s13287-017-0757-1|DOI:10.1093/humrep/den051|DOI:10.1095/biolreprod.108.075226|doi:10.3390/cells1041061|doi:10.5966/sctm.2015-0022|doi:10.3346/jkms.2012.27.8.857|doi:10.1016/j.jcyt.2017.03.001|doi:10.1186/s13287-017-0757-1|DOI:10.1095/biolreprod.108.075226|doi:10.3390/cells1041061|doi:10.5966/sctm.2015-0022|doi:10.3346/jkms.2012.27.8.857|doi:10.1016/j.jcyt.2017.03.001|doi:10.1186/s13287-017-0757-1|doi:10.5966/sctm.2015-0022|doi:10.1016/j.jcyt.2017.03.001|PMID:1697563|PMID:1697563 +UBERON:0003422 mesenchyme of umbilical cord mesenchyme of umbilical cord (Wharton's jelly) CL:0002568 mesenchymal stem cell of Wharton's jelly mesenchymal stromal cell of Wharton's jelly HGNC:11801, HGNC:1681, HGNC:3349, HGNC:8021 doi:10.3390/cells1041061|doi:10.1016/j.jcyt.2017.03.001|doi:10.1186/s13287-017-0757-1|DOI:10.1095/biolreprod51.4.739|DOI:10.1095/biolreprod.108.075226|doi.org/10.1182/blood.V74.2.751.751|doi:10.3390/cells1041061|doi:10.5966/sctm.2015-0022|doi:10.3346/jkms.2012.27.8.857|doi:10.1016/j.jcyt.2017.03.001|doi:10.1186/s13287-017-0757-1|DOI:10.1093/humrep/den051|DOI:10.1095/biolreprod.108.075226|doi:10.3390/cells1041061|doi:10.5966/sctm.2015-0022|doi:10.3346/jkms.2012.27.8.857|doi:10.1016/j.jcyt.2017.03.001|doi:10.1186/s13287-017-0757-1|DOI:10.1095/biolreprod.108.075226|doi:10.3390/cells1041061|doi:10.5966/sctm.2015-0022|doi:10.3346/jkms.2012.27.8.857|doi:10.1016/j.jcyt.2017.03.001|doi:10.1186/s13287-017-0757-1 +UBERON:0015172 endometrial blood vessel decidual blood vessel CL:0008036 extravillous trophoblast extravillous trophoblast (endovascular) HGNC:1764, HGNC:4964, HGNC:6445, HGNC:6934 doi.org/10.1016/0198-8859(93)90138-Q|DOI:10.1016/j.jim.2003.03.001|DOI:10.1053/plac.2000.0559|doi.org/10.1095/biolreprod.106.055244|PMID:8804361|doi:10.1155/2021/6662201|doi:10.1093/humrep/dem265|doi:10.1172/JCI119387|PMID:8804361 +UBERON:0000088 trophoblast chorionic ectoderm (from chorion membrane) CL:0008036 extravillous trophoblast extravillous trophoblast (EVT) HGNC:19254, HGNC:4964, HGNC:6445, HGNC:6934 doi.org/10.1016/0198-8859(93)90138-Q|DOI:10.1016/j.jim.2003.03.001|DOI:10.1053/plac.2000.0559|doi.org/10.1095/biolreprod.106.055244|PMID:8804361|doi:10.1155/2021/6662201|doi:10.1093/humrep/dem265|DOI:10.1242/dev.148932|PMID:8804361 +UBERON:0002451 endometrial gland endometrial gland CL:0009084 epithelial cell of endometrial gland endometrial epithelial cell HGNC:11529, HGNC:4015, HGNC:6427, HGNC:6436 DOI:10.1177/1933719118756745|DOI:10.1177/1933719118756745|doi:10.1186/s13287-018-0962-6|DOI:10.1093/humrep/det285 +UBERON:0003262 amniotic mesoderm amniotic mesoderm CL:2000061 placental amniotic mesenchymal stromal cell amnion mesenchymal stromal cell (AMSC) HGNC:11801, HGNC:1681, HGNC:3349, HGNC:8021 doi:10.3390/cells1041061|doi:10.1016/j.jcyt.2017.03.001|doi:10.1186/s13287-017-0757-1|DOI:10.1095/biolreprod51.4.739|DOI:10.1095/biolreprod.108.075226|doi.org/10.1182/blood.V74.2.751.751|doi:10.3390/cells1041061|doi:10.5966/sctm.2015-0022|doi:10.3346/jkms.2012.27.8.857|doi:10.1016/j.jcyt.2017.03.001|doi:10.1186/s13287-017-0757-1|DOI:10.1093/humrep/den051|DOI:10.1095/biolreprod.108.075226|doi:10.3390/cells1041061|doi:10.5966/sctm.2015-0022|doi:10.3346/jkms.2012.27.8.857|doi:10.1016/j.jcyt.2017.03.001|doi:10.1186/s13287-017-0757-1|DOI:10.1095/biolreprod.108.075226|doi:10.3390/cells1041061|doi:10.5966/sctm.2015-0022|doi:10.3346/jkms.2012.27.8.857|doi:10.1016/j.jcyt.2017.03.001|doi:10.1186/s13287-017-0757-1 +UBERON:0007106 chorionic villus chorionic villous CL:2000062 placental villus capillary endothelial cell placental microvascular endothelial cells HGNC:10477, HGNC:12726, HGNC:3468, HGNC:6934, HGNC:9864 PMID:8804361|doi:10.1155/2021/6662201|doi:10.1093/humrep/dem265|doi:10.1290/1071-2690(2001)037<0408:IOECFH>2.0.CO;2|DOI:10.1093/oxfordjournals.humrep.a136040|doi.org/10.1016/j.ajog.2009.01.025|PMID:8804361 +UBERON:0015172 endometrial blood vessel decidual blood vessel CL:2000091 endometrial microvascular endothelial cell endometrial microvascular endothelial cell (EMEC) HGNC:12726, HGNC:6934 PMID:8804361|doi:10.1155/2021/6662201|doi:10.1093/humrep/dem265|doi:10.1290/1071-2690(2001)037<0408:IOECFH>2.0.CO;2|DOI:10.1093/oxfordjournals.humrep.a136040|PMID:8804361 +UBERON:0007106 chorionic villus chorionic villous CL:3000001 Hofbauer cell Hofbauer cell (HC) HGNC:1631, HGNC:1693, HGNC:3613 doi:10.1016/j.placenta.2007.11.003|DOI:10.1053/plac.2000.0559|PMID:8014121|PMID:8014121 diff --git a/logs/ct_loc_markers/Prostate_report.tsv b/logs/ct_loc_markers/Prostate_report.tsv new file mode 100644 index 000000000..2e87f6513 --- /dev/null +++ b/logs/ct_loc_markers/Prostate_report.tsv @@ -0,0 +1,12 @@ +Terminal AS/ID Terminal AS/label Terminal AS/user_label Terminal CT/ID Terminal CT/label Terminal CT/user_label Markers References +UBERON:0004184 prostate gland stroma prostate stroma CL:0000359 vascular associated smooth muscle cell vascular smooth muscle HGNC:130, HGNC:1663, HGNC:6934 doi:10.1002/path.5751 +UBERON:0004184 prostate gland stroma prostate stroma CL:0000669 pericyte prostate perictye HGNC:130, HGNC:29836, HGNC:4278 doi:10.1002/path.5751 +UBERON:0001335 prostatic urethra prostatic urethra CL:0002313 neuroendocrine cell of the prostatic urethral epithelium neuroendocrine cell of prostatic urethra HGNC:10575, HGNC:1929, HGNC:4605 doi:10.1002/path.5751 +UBERON:0000428 prostate epithelium prostate epithelium CL:0002340 luminal cell of prostate epithelium luminal epithelia HGNC:125, HGNC:6364, HGNC:7372 doi:10.1002/path.5751 +UBERON:0000428 prostate epithelium prostate epithelium CL:0002341 basal cell of prostate epithelium basal epithelia HGNC:10492, HGNC:6416, HGNC:6442 doi:10.1002/path.5751 +UBERON:0001335 prostatic urethra prostatic urethra CL:0017011 hillock cell of prostatic urethral epithelium hillock cell of prostatic urethra HGNC:24880, HGNC:384, HGNC:6415 doi:10.1002/path.5751 +UBERON:0004184 prostate gland stroma prostate stroma CL:1000299 fibroblast of connective tissue of prostate interstitial fibroblast HGNC:1346, HGNC:2705, HGNC:7035 doi:10.1002/path.5751 +UBERON:0004184 prostate gland stroma prostate stroma CL:1000301 fibroblast of subepithelial connective tissue of prostatic gland periepithelial fibroblast HGNC:2705, HGNC:612, HGNC:9592 doi:10.1002/path.5751 +UBERON:0004184 prostate gland stroma prostate stroma CL:1000487 smooth muscle cell of prostate prostate smooth muscle HGNC:130, HGNC:145, HGNC:2770 doi:10.1002/path.5751 +UBERON:0004184 prostate gland stroma prostate stroma CL:2000059 prostate gland microvascular endothelial cell endothelia HGNC:10718, HGNC:2047, HGNC:8823 doi:10.1002/path.5751 +UBERON:0001335 prostatic urethra prostatic urethra CL:4032000 club-like cell of prostatic urethral epithelium club cell of prostatic urethra HGNC:12523, HGNC:18384, HGNC:9500 doi:10.1002/path.5751 diff --git a/logs/ct_loc_markers/Skin_report.tsv b/logs/ct_loc_markers/Skin_report.tsv new file mode 100644 index 000000000..404791253 --- /dev/null +++ b/logs/ct_loc_markers/Skin_report.tsv @@ -0,0 +1,52 @@ +Terminal AS/ID Terminal AS/label Terminal AS/user_label Terminal CT/ID Terminal CT/label Terminal CT/user_label Markers References +UBERON:0002067 dermis Dermis CL:0000097 mast cell Mast cell HGNC:1604, HGNC:3358, HGNC:6342 DOI:10.1016/S1081-1206(10)62853-0|DOI:10.1111/imr.12639|NoDOI|DOI:10.1159/000053694.|PMID:10582733||PMID:29431209||PMID:7682764|PMID:11306952 +UBERON:0002072 hypodermis Subcutaneous CL:0000097 mast cell Mast cell HGNC:1604, HGNC:3358, HGNC:6342 DOI:10.1016/S1081-1206(10)62853-0|DOI:10.1111/imr.12639.||DOI:10.1159/000053694|PMID:10582733||PMID:29431209||PMID:7682764|PMID:11306952 +UBERON:0035549 vasculature of integument Blood vessels CL:0000115 endothelial cell Endothelial cell HGNC:3446, HGNC:8823 DOI:10.1111/1523-1747.ep12512516|DOI:10.1152/ajpcell.00524.2001|DOI:10.1016/j.vph.2016.05.003|PMID:778283|PMID:11940533||PMID:27208692 +UBERON:0001821 sebaceous gland Sebaceous glands CL:0000151 sebum secreting cell Germinative (epithelial) cell, Sebocyte HGNC:248, HGNC:7508 DOI:10.1016/j.biocel.2009.11.017|DOI:10.4161/derm.1.2.8736|DOI:10.1016/j.bbagen.2013.05.016|PMID:19944183|PMID:20224690|PMID:23688400 +UBERON:0002072 hypodermis Subcutaneous CL:0000235 macrophage Macrophage HGNC:1631, HGNC:1693 DOI:10.1038/nri2622|DOI:10.1038/labinvest.2016.116|DOI:10.1038/jid.2010.165|PMID:19763149|PMID:27869795|PMID:20555352 +UBERON:0002067 dermis Dermis CL:0000235 macrophage Macrophage HGNC:1631, HGNC:1693 DOI:10.1038/nri2622|DOI:10.1136/ard.2003.013029|DOI:10.1016/j.actatropica.2016.01.008|PMID:19763149|PMID:15194571|PMID:26827741| +UBERON:0002072 hypodermis Subcutaneous CL:0000236 B cell B cell HGNC:1633, HGNC:1698, HGNC:7315 DOI:10.4049/jimmunol.1801211|DOI:10.4049/jimmunol.1801211|DOI:10.4049/jimmunol.1801211|PMID:30833422|PMID:30833422|PMID:30833422 +UBERON:0002067 dermis Dermis CL:0000236 B cell B cell HGNC:1633, HGNC:1698, HGNC:7315 DOI:10.4049/jimmunol.1801211|PMID:30833422 +UBERON:0002025 stratum basale of epidermis Stratum basale (SB) CL:0000242 Merkel cell Merkel cell HGNC:11506, HGNC:1929, HGNC:20412 DOI:10.4103/0973-029X.125208|DOI:10.1111/1523-1747.ep12606183|DOI:10.1111/1523-1747.ep12319788|DOI:10.1083/jcb.200603161|PMID:24574661|PMID:2677156|PMID:16831889 +UBERON:0002026 stratum spinosum of epidermis Stratum spinosum (SS) CL:0000242 Merkel cell Merkel cell HGNC:11506, HGNC:20412 DOI:10.4103/0973-029X.125208|DOI:10.1159/000248491|DOI:10.1111/1523-1747.ep12606183|PMID:24574661|PMID:3141225 +UBERON:0002069 stratum granulosum of epidermis Stratum granulosum (SG) CL:0000312 keratinocyte Keratinocyte (Granular) HGNC:11998, HGNC:2718, HGNC:6413, HGNC:7107 DOI:10.1146/annurev.cb.11.110195.001011|DOI:10.1083/jcb.200603161|DOI:10.1083/jcb.200603161|PMID:8689554||PMID:16831889|PMID:16831889 +UBERON:0002067 dermis Dermis CL:0000359 smooth muscle cell Perivascular smooth muscle cell HGNC:130, HGNC:1441, HGNC:2155 DOI:10.1002/biot.201200199|DOI:10.1083/jcb.113.1.147|NoDOI|PMID:23554249|PMID:2007619|PMID:8006064| +UBERON:0002072 hypodermis Subcutaneous CL:0000359 smooth muscle cell Perivascular smooth muscle cell HGNC:130, HGNC:1441, HGNC:2155 DOI:10.1002/biot.201200199|NoDOI|NoDOI|PMID:23554249|PMID:8006064| +UBERON:0007121 skin nerve field nerve CL:0000540 Neuron Neuron HGNC:12513, HGNC:17888, HGNC:7738 DOI:10.14670/HH-11-610|DOI:10.1212/WNL.0000000000001773|DOI:10.1016/j.pneurobio.2009.10.020|DOI:10.1016/S0065-1281(97)80024-4|PMID:25799052|PMID:26109717|PMID:19879917|PMID:9381913| +UBERON:0002072 hypodermis Subcutaneous CL:0000545 T-helper 1 cell T helper HGNC:1673, HGNC:1678 DOI:10.1111/1523-1747.ep12470172|DOI:10.1111/1523-1747.ep12470172|DOI:10.1111/1523-1747.ep12470172|PMID:3494791|PMID:3494791|PMID:3494791 +UBERON:0002067 dermis Dermis CL:0000545 T-helper 1 cell T helper HGNC:1673, HGNC:1678 DOI:10.1111/1523-1747.ep12470172|DOI:10.1111/1523-1747.ep12470172|DOI:10.1111/1523-1747.ep12470172|PMID:3494791|PMID:3494791|PMID:3494791 +UBERON:0002067 dermis Dermis CL:0000623 natural killer cell Natural killer cell HGNC:1673, HGNC:3619, HGNC:7656 DOI:10.1016/j.jaci.2009.11.020|DOI:10.1016/s1471-4906(01)02060-9|DOI:10.1016/s1471-4906(01)02060-9|DOI:10.1016/s1471-4906(01)02060-9|PMID:20109737|PMID:11698225||PMID:11698225||PMID:11698225| +UBERON:0002025 stratum basale of epidermis Stratum basale (SB) CL:0000646 basal cell Keratinocyte (Basal) HGNC:11998, HGNC:2718, HGNC:6416, HGNC:6442, HGNC:7107 DOI:10.1038/nrm3175|DOI:10.1083/jcb.200603161|DOI:10.1083/jcb.200603161|PMID:21860392|PMID:16831889|PMID:16831889 +UBERON:0002026 stratum spinosum of epidermis Stratum spinosum (SS) CL:0000649 prickle cell Keratinocytes (Spinous) HGNC:6412, HGNC:6413 DOI:10.1038/jid.1952.87|DOI:10.1083/jcb.200603161|DOI:10.1083/jcb.200603161|PMID:12981303||PMID:16831889|PMID:16831889 +UBERON:0002067 dermis Dermis CL:0000669 pericyte cell Pericyte HGNC:130, HGNC:6934, HGNC:8804 DOI:10.1186/s12929-018-0423-7|DOI:10.1083/jcb.113.1.147|DOI:10.1016/j.jchemneu.2018.06.001|PMID:295192458|PMID:2007619|PMID:29885791 +UBERON:0002067 dermis Dermis CL:0000771 eosinophil Eosinophil HGNC:1709, HGNC:7218 DOI:10.1016/j.jaip.2018.06.002|PMID:29902530| +UBERON:0002072 hypodermis Subcutaneous CL:0000771 eosinophil Eosinophil HGNC:1709, HGNC:7218 DOI:10.1016/j.jaip.2018.06.002|PMID:29902530| +UBERON:0002072 hypodermis Subcutaneous CL:0000775 neutrophil Neutrophil HGNC:11249, HGNC:7218 DOI:10.1172/JCI124616|DOI:10.1111/1523-1747.ep12506462|DOI:10.4049/jimmunol.181.5.3628|PMID:31205028|PMID:6276474||PMID:18714037 +UBERON:0002067 dermis Dermis CL:0000775 neutrophil Neutrophil HGNC:11249, HGNC:7218 DOI:10.1172/JCI124616|DOI:10.1111/1523-1747.ep12506462|DOI:10.4049/jimmunol.181.5.3628|PMID:31205028|PMID:6276474||PMID:18714037 +UBERON:0002067 dermis Dermis CL:0000786 plasma cell Plasma cell HGNC:10658, HGNC:1667, HGNC:1698 DOI:10.1016/j.jid.2019.05.009|PMID:31152755 +UBERON:0002067 dermis Dermis CL:0000815 regulatory T cell T reg HGNC:1673, HGNC:1678, HGNC:6106 DOI:10.1111/1523-1747.ep12470172|DOI:10.1111/imm.12791|DOI:10.1111/imm.12791|DOI:10.1111/imm.12791|PMID:3494791|PMID:28699278|PMID:28699278|PMID:28699278 +UBERON:0002072 hypodermis Subcutaneous CL:0000815 regulatory T cell T reg HGNC:1673, HGNC:1678, HGNC:6106 DOI:10.1111/1523-1747.ep12470172|DOI:10.1111/imm.12791|DOI:10.1111/imm.12791|DOI:10.1111/imm.12791|PMID:3494791|PMID:28699278|PMID:28699278|PMID:28699278 +UBERON:0002067 dermis Dermis CL:0000910 cytotoxic T cell T killer HGNC:1673, HGNC:1706 DOI:10.1111/1523-1747.ep12470172|DOI:10.1111/1523-1747.ep12470172|DOI:10.1111/1523-1747.ep12470172|PMID:3494791|PMID:3494791|PMID:3494791 +UBERON:0002072 hypodermis Subcutaneous CL:0000910 cytotoxic T cell T killer HGNC:1673, HGNC:1706 DOI:10.1111/1523-1747.ep12470172|DOI:10.1111/1523-1747.ep12470172|DOI:10.1111/1523-1747.ep12470172|PMID:3494791|PMID:3494791|PMID:3494791 +UBERON:0002067 dermis Dermis CL:0001006 dermal dendritic cell Dendritic cell (DC1) HGNC:6147, HGNC:6149 DOI:10.1016/j.jdermsci.2014.08.012|DOI:10.1111/j.0105-2896.2009.00874.x|DOI:10.4049/jimmunol.1701056|PMID:25301671|PMID:20193025||PMID:29158419| +UBERON:0002067 dermis Dermis CL:0001067 group 1 innate lymphoid cell Natural killer cell / Innate lymphoid cell 1 HGNC:11599, HGNC:1673, HGNC:7656 DOI:10.1126/science.aaa6566|DOI:10.1126/science.aaa6566|DOI:10.1126/science.aaa6566|PMID:25999512;|PMID:25999512;|PMID:25999512; +UBERON:0002067 dermis Dermis CL:0001069 group 2 innate lymphoid cell Innate lymphoid cell 2 HGNC:1673, HGNC:4172, HGNC:7656 DOI:10.1038/ni.2584|DOI:10.1126/science.aaa6566|DOI:10.1126/science.aaa6566|PMID:23603794|PMID:25999512;|PMID:25999512; +UBERON:0002067 dermis Dermis CL:0001071 group 3 innate lymphoid cell Innate lymphoid cell 3 HGNC:10260, HGNC:1673, HGNC:7656 DOI:10.1038/ncomms11394|DOI:10.1126/science.aaa6566|DOI:10.1126/science.aaa6566|DOI:10.1038/ncomms11394|PMID:27099134|PMID:25999512;|PMID:25999512;|PMID:27099134 +UBERON:0002067 dermis Dermis CL:0002138 endothelial cell of lymphatic vessel Lymphatic HGNC:14687, HGNC:29602 DOI:10.1046/j.1087-0024.2000.00001.x|DOI:10.3389/fimmu.2012.00283|DOI:10.1038/jid.2013.481|PMID:11147669||PMID:22988448|PMID:24352044 +UBERON:0002072 hypodermis Subcutaneous CL:0002138 endothelial cell of lymphatic vessel Lymphatic HGNC:14687, HGNC:29602 DOI:10.1046/j.1087-0024.2000.00001.x|DOI:10.3389/fimmu.2012.00283|DOI:10.1038/jid.2013.481|PMID:11147669||PMID:22988448|PMID:24352044 +UBERON:0002027 stratum corneum of epidermis Stratum corneum (SC) CL:0002153 corneocyte Keratinocyte (Corneocyte) HGNC:3748, HGNC:6187 DOI:10.1146/annurev.cb.11.110195.001011|DOI:10.1111/1523-1747.ep12298323|DOI:10.1021/bi00492a018|PMID:8689554||PMID:8752847|PMID:2248957 +UBERON:0002067 dermis Dermis CL:0002292 type I cell of carotid body Glomus cell HGNC:130, HGNC:3023 DOI:10.1016/j.cmet.2015.09.004|NoDOI|DOI:10.1016/j.acthis.2015.07.007|PMID:26437605||PMID:2158236|PMID:26272445 +UBERON:0002072 hypodermis Subcutaneous CL:0002292 type I cell of carotid body Glomus cell HGNC:130, HGNC:3023 DOI:10.1016/j.cmet.2015.09.004|NoDOI|DOI:10.1016/j.acthis.2015.07.007|PMID:26437605||PMID:2158236|PMID:26272445 +UBERON:0002073 hair follicle Hair follicles CL:0002337 keratinocyte stem cell keratinocyte stem cell HGNC:1662, HGNC:6421 DOI:10.1002/jcp.22275|DOI:10.1038/labinvest.2009.48|DOI:10.1038/labinvest.2009.48|DOI:10.1038/labinvest.2009.48|PMID:20568222||PMID:19506554|PMID:19506554|PMID:19506554 +UBERON:0002025 stratum basale of epidermis Stratum basale (SB) CL:0002457 epidermal Langerhans cell Langerhans cell HGNC:1634, HGNC:17935 DOI:10.1016/S0171-2985(84)80117-5|DOI:10.1111/1523-1747.ep12712175|DOI:10.1016/s1074-7613(00)80160-0|PMID:6397423||PMID:2784820|PMID:10661407 +UBERON:0002026 stratum spinosum of epidermis Stratum spinosum (SS) CL:0002457 epidermal Langerhans cell Langerhans cell HGNC:1634, HGNC:17935 DOI:10.1016/S0171-2985(84)80117-5|DOI:10.1111/1523-1747.ep12712175|DOI:10.1016/s1074-7613(00)80160-0|PMID:6397423||PMID:2784820|PMID:10661407 +UBERON:0002069 stratum granulosum of epidermis Stratum granulosum (SG) CL:0002457 epidermal Langerhans cell Langerhans cell HGNC:1634, HGNC:17935, HGNC:7067 DOI:10.1016/S0171-2985(84)80117-5|DOI:10.1111/1523-1747.ep12712175|DOI:10.1016/s1074-7613(00)80160-0|PMID:6397423||PMID:2784820|PMID:10661407 +UBERON:0002072 hypodermis Subcutaneous CL:0002521 subcutaneous fat cell Adipocyte HGNC:10500, HGNC:1435 DOI:10.1101/cshperspect.a015271|DOI:10.1155/2010/790431|DOI:10.1016/j.humpath.2005.11.006|PMID:24591537|PMID:20672003|PMID:16613326 +UBERON:0002067 dermis Dermis CL:0002573 Schwann cell Schwann cell HGNC:10492, HGNC:7809 DOI:10.1111/wrr.12647|DOI:10.1111/j.1365-4362.1984.tb05661.x|DOI:10.1093/brain/awm199|DOI:10.1016/S0065-1281(97)80024-4|PMID:30098299|PMID:6373634||PMID:17898011||PMID:9381913| +UBERON:0002072 hypodermis Subcutaneous CL:0002573 Schwann cell Schwann cell HGNC:10492, HGNC:7809 DOI:10.1111/wrr.12647|DOI:10.1111/j.1365-4362.1984.tb05661.x|DOI:10.1093/brain/awm199|PMID:30098299|PMID:6373634||PMID:17898011| +UBERON:0002067 dermis Dermis CL:0002620 skin fibroblast Fibroblast HGNC:12692, HGNC:1662, HGNC:3541 DOI:10.1016/j.tcb.2014.10.001|DOI:10.1111/j.1365-2133.1989.tb15509.x|DOI:10.1074/jbc.M701586200|DOI:10.1097/00000372-199606000-00008|PMID:25455110||PMID:2576222|PMID:17567584|PMID:8806963 +UBERON:0002072 hypodermis Subcutaneous CL:0002620 skin fibroblast Fibroblast HGNC:12692, HGNC:1662, HGNC:3541 DOI:10.1016/j.tcb.2014.10.001|DOI:10.1111/j.1365-2133.1989.tb15509.x|DOI:10.1074/jbc.M701586200|DOI:10.1097/00000372-199606000-00008|PMID:25455110||PMID:2576222|PMID:17567584|PMID:8806963 +UBERON:0002067 dermis Dermis CL:1000417 myoepithelial cell of sweat gland myoepithelial cell HGNC:10492, HGNC:130, HGNC:2155 DOI:10.1247/csf.14009|DOI:10.1247/csf.14009|DOI:10.1097/DAD.0000000000000431|DOI:10.1046/j.1365-2133.1997.17651853.x|PMID:25196208|PMID:25196208|PMID:26630681||PMID:9274623 +UBERON:0008974 apocrine gland Apocrine glands CL:1000417 myoepithelial cell of sweat gland myoepithelial cell HGNC:4172, HGNC:8993 |DOI:10.1083/jcb.95.2.580|DOI:10.1046/j.0022-202x.2001.00005.x|DOI:10.1097/DAD.0000000000000306|PMID:6183275|PMID:11764285|PMID:26595821 +UBERON:0000423 eccrine sweat gland Eccrine (sweat) glands CL:1000417 myoepithelial cell of sweat gland myoepithelial cell HGNC:10492, HGNC:30840, HGNC:6436 DOI:10.1111/exd.12773|DOI:10.1111/1523-1747.ep12277180|DOI:10.1046/j.1365-2133.1997.17651853.x|PMID:26014472|PMID:2414369|PMID:9274623 +UBERON:0002025 stratum basale of epidermis Stratum basale (SB) CL:1000458 melanocyte of skin Melanocyte HGNC:10492, HGNC:11190, HGNC:7124 DOI:10.1038/s41586-020-2785-8|DOI:10.1074/jbc.m309036200|DOI:10.1046/j.1365-2133.1997.17651853.x|DOI:10.1034/j.1600-0854.2002.30909.x|PMID:33029006|PMID:12944398|PMID:9274623|PMID:12191019 diff --git a/logs/ct_loc_markers/Small_intestine_report.tsv b/logs/ct_loc_markers/Small_intestine_report.tsv new file mode 100644 index 000000000..d3219c0b0 --- /dev/null +++ b/logs/ct_loc_markers/Small_intestine_report.tsv @@ -0,0 +1,2 @@ +Terminal AS/ID Terminal AS/label Terminal AS/user_label Terminal CT/ID Terminal CT/label Terminal CT/user_label Markers References +UBERON:0008346 duodenal epithelium Epithelium CL:1000344 paneth cell of epithelium proper of small intestine Paneth cell HGNC:2764, HGNC:6740 DOI:10.1016/j.celrep.2021.108819 diff --git a/logs/ct_loc_markers/Spleen_report.tsv b/logs/ct_loc_markers/Spleen_report.tsv new file mode 100644 index 000000000..81679b8ab --- /dev/null +++ b/logs/ct_loc_markers/Spleen_report.tsv @@ -0,0 +1,94 @@ +Terminal AS/ID Terminal AS/label Terminal AS/user_label Terminal CT/ID Terminal CT/label Terminal CT/user_label Markers References +UBERON:0001266 splenic cord Splenic Cord CL:0000037 hematopoetic stem cell Hematopoetic Stem Cell HGNC:11200, HGNC:11801, HGNC:1633, HGNC:1662, HGNC:1667, HGNC:17890, HGNC:2298, HGNC:5870, HGNC:9666 DOI:10.1111/imcb.12035|DOI:10.1101/2020.01.26.919753 +UBERON:0001265 trabecula of spleen Trabeculae CL:0000186 myofibroblast cell Myofibroblast HGNC:130, HGNC:1441 DOI:10.1038/s41598-018-34105-3|NoDOI|NoDOI|Toccanier-PelteMF,SkalliO,KapanciY,GabbianiG|Characterizationofstromalcellswithmyoidfeaturesinlymphnodesandspleeninnormalandpathologicconditions|AmJPathol|1987Oct;129(1):109-18|PMID:3310649;PMCID:PMC1899700| +UBERON:0004641 spleen capsule Capsule CL:0000186 myofibroblast cell Myofibroblast HGNC:130, HGNC:1441 NoDOI|NoDOI|Toccanier-PelteMF,SkalliO,KapanciY,GabbianiG|Characterizationofstromalcellswithmyoidfeaturesinlymphnodesandspleeninnormalandpathologicconditions|AmJPathol|1987Oct;129(1):109-18|PMID:3310649;PMCID:PMC1899700| +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0000186 myofibroblast cell Myofibroblasts HGNC:130, HGNC:1441 DOI:10.1038/s41598-018-34105-3|NoDOI|NoDOI|Toccanier-PelteMF,SkalliO,KapanciY,GabbianiG|Characterizationofstromalcellswithmyoidfeaturesinlymphnodesandspleeninnormalandpathologicconditions|AmJPathol|1987Oct;129(1):109-18|PMID:3310649;PMCID:PMC1899700| +UBERON:0013132 Penicillar Arteriole Penicillar Arteriole CL:0000192 smooth muscle cell Splenic Smooth Muscle Cell HGNC:130 DOI:10.1111/imm.12469 +UBERON:0005353 spleen perifollicular zone Perifollicular Zone CL:0000232 erythrocyte Erythrocytes HGNC:4702 DOI:10.1046/j.1365-2567.1997.00328.x|DOI:10.1182/blood.2020005351 +UBERON:0001266 splenic cord Splenic Cord CL:0000232 erythrocyte Erythrocytes HGNC:4702 DOI:10.1046/j.1365-2567.1997.00328.x|DOI:10.1182/blood.2020005351 +UBERON:0001266 splenic cord Splenic Cord CL:0000233 platelet Platelet HGNC:4439, HGNC:4444, HGNC:6138, HGNC:8861 DOI:10.1046/j.1537-2995.1985.25385219900.x|DOI:10.1002/cyto.a.20133|DOI:10.1186/s13059-019-1906-x +UBERON:0005196 spleen germinal center Germinal Center CL:0000442 follicular dendritic cell Follicular Dendritic Cell (FDC) HGNC:10639, HGNC:10639, HGNC:11204, HGNC:11784, HGNC:11801, HGNC:130, HGNC:16953, HGNC:17069, HGNC:2235, HGNC:2334, HGNC:2336, HGNC:2336, HGNC:3349, HGNC:3612, HGNC:3618, HGNC:6765, HGNC:6765, HGNC:7036, HGNC:7809, HGNC:9607 DOI:10.1111/imm.12469|DOI:10.1007/s00418-011-0799-x|DOI:10.1038/s41467-019-09728-3 +UBERON:0001251 Marginal Zone of Spleen Superficial Zone CL:0000442 follicular dendritic cell Follicular Dendritic Cell (FDC) HGNC:10639, HGNC:11204, HGNC:11784, HGNC:11801, HGNC:130, HGNC:16953, HGNC:17069, HGNC:2235, HGNC:2334, HGNC:2336, HGNC:2336, HGNC:3349, HGNC:3618, HGNC:6765, HGNC:6765, HGNC:7036, HGNC:7809, HGNC:9607 DOI:10.1111/imm.12469|DOI:10.1007/s00418-011-0799-x|NoDOI|DOI:10.1038/s41467-019-09728-3 +UBERON:0004041 spleen primary B follicle Primary Follicle CL:0000442 follicular dendritic cell Follicular Dendritic Cell (FDC) HGNC:10639, HGNC:10639, HGNC:11204, HGNC:11784, HGNC:11801, HGNC:130, HGNC:16953, HGNC:17069, HGNC:2235, HGNC:2334, HGNC:2336, HGNC:2336, HGNC:3349, HGNC:3612, HGNC:3618, HGNC:6765, HGNC:6765, HGNC:7036, HGNC:7809, HGNC:9607 DOI:10.1111/imm.12469|DOI:10.1007/s00418-011-0799-x|DOI:10.1038/s41467-019-09728-3 +UBERON:0001251 Marginal Zone of Spleen Superficial Zone CL:0000492 CD4-positive helper T cell CD4+ T cell HGNC:1674, HGNC:1674, HGNC:1678, HGNC:1678, HGNC:1706 DOI:10.1111/imm.12469|DOI:10.1186/s13059-019-1906-x +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0000492 CD4-positive helper T cell CD4+ T Cell HGNC:1674, HGNC:1674, HGNC:1678, HGNC:1678, HGNC:1706, HGNC:1706 DOI:10.1126/sciimmunol.aau6085|DOI:10.1186/s13059-019-1906-x +UBERON:0013132 Penicillar Arteriole Penicillar Arteriole CL:0000499 stromal cell Splenic Stromal Cell (non-FRC/non-FDC) HGNC:130, HGNC:6446, HGNC:6765, HGNC:7809 DOI:10.1111/imm.12469 +UBERON:0005353 spleen perifollicular zone Perifollicular Zone CL:0000499 stromal cell Stromal Cell HGNC:11127, HGNC:11801, HGNC:3349 DOI:10.1007/s00418-013-1172-z|DOI:10.1111/j.1365-2559.1986.tb02482.x|DOI:10.1111/j.1365-2559.1985.tb02841.x +UBERON:0001251 Marginal Zone of Spleen Superficial Zone CL:0000499 stromal cell Splenic Stromal Cell (non-FRC/non-FDC) HGNC:10639, HGNC:11784, HGNC:11801, HGNC:11926, HGNC:130, HGNC:2334, HGNC:2336, HGNC:29602, HGNC:3349, HGNC:6765, HGNC:7809 DOI:10.1111/imm.12469 +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0000499 stromal cell Splenic Stromal Cell (non-FRC/non-FDC) HGNC:130, HGNC:6765, HGNC:7809 DOI:10.1111/imm.12469 +UBERON:0001266 splenic cord Splenic Cord CL:0000499 stromal cell Splenic Stromal Cell (non-FRC/non-FDC) HGNC:130, HGNC:6765, HGNC:7809 DOI:10.1111/imm.12469 +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0000623 natural killer cell NK Cell HGNC:17013, HGNC:19077, HGNC:3619, HGNC:3619, HGNC:7656, HGNC:7656, HGNC:9360 DOI:10.4049/jimmunol.172.3.1455|DOI:10.1186/s13059-019-1906-x +UBERON:0001266 splenic cord Splenic Cord CL:0000623 natural killer cell NK Cell HGNC:17013, HGNC:19077, HGNC:3619, HGNC:3619, HGNC:7656, HGNC:7656 DOI:10.4049/jimmunol.172.3.1455|DOI:10.1186/s13059-019-1906-x +UBERON:0001266 splenic cord Splenic Cord CL:0000625 CD8-positive, alpha-beta T cell CD8+ T Cell HGNC:1674, HGNC:1674, HGNC:1678, HGNC:1678, HGNC:1706, HGNC:1706 NoDOI|DOI:10.1186/s13059-019-1906-x +UBERON:0001250 red pulp of spleen Red Pulp CL:0000669 pericyte Splenic Pericyte HGNC:130, HGNC:7809 DOI:10.1371/journal.pone.0191019|DOI:10.1007/s00418-020-01924-3 +UBERON:0001251 Marginal Zone of Spleen Superficial Zone CL:0000775 neutrophil Neutrophil HGNC:1820, HGNC:3309, HGNC:4015, HGNC:7218 DOI:10.1038/ni.2194|DOI:10.1038/ni.2830|DOI:10.1111/imm.12469 +UBERON:0005353 spleen perifollicular zone Perifollicular Zone CL:0000775 neutrophil Neutrophil HGNC:1820, HGNC:3309, HGNC:4015, HGNC:7218 DOI:10.1038/ni.2194|DOI:10.1038/ni.2830 +UBERON:0001251 Marginal Zone of Spleen Superficial Zone CL:0000786 plasma cell Plasma Cell HGNC:10658, HGNC:10658, HGNC:11922, HGNC:12801, HGNC:1667, HGNC:1698, HGNC:2561, HGNC:5525, HGNC:5541, HGNC:5541, HGNC:5713, HGNC:6119, HGNC:6148, HGNC:7315 NoDOI|DOI:10.1002/eji.200425442|DOI:10.1186/s13059-019-1906-x +UBERON:0001266 splenic cord Splenic Cord CL:0000786 plasma cell Plasma Cell HGNC:10658, HGNC:10658, HGNC:11922, HGNC:12801, HGNC:1667, HGNC:1698, HGNC:2561, HGNC:5525, HGNC:5541, HGNC:5713, HGNC:6119, HGNC:6148 NoDOI|DOI:10.1002/eji.200425442|DOI:10.1186/s13059-019-1906-x +UBERON:0013132 Penicillar Arteriole Penicillar Arteriole CL:0000787 memory B cell Memory-Like B Cell HGNC:1633, HGNC:1698, HGNC:5541, HGNC:7315, HGNC:7315 DOI:10.1007/s00418-013-1172-z|DOI:10.1186/s13059-019-1906-x +UBERON:0001251 Marginal Zone of Spleen Superficial Zone CL:0000787 memory B cell Memory B Cell HGNC:11922, HGNC:1633, HGNC:1698, HGNC:5480, HGNC:5541, HGNC:7315, HGNC:7315 DOI:10.1111/imm.12469|DOI:10.1186/s13059-019-1906-x +UBERON:0001250 red pulp of spleen Red Pulp CL:0000787 memory B cell Memory-Like B Cell HGNC:11922, HGNC:1633, HGNC:1698, HGNC:5480, HGNC:5541, HGNC:7315, HGNC:7315 DOI:10.1007/s00418-013-1172-z|DOI:10.1186/s13059-019-1906-x +UBERON:0004041 spleen primary B follicle Primary Follicle CL:0000787 memory B cell Memory B Cell HGNC:11922, HGNC:1633, HGNC:1698, HGNC:5480, HGNC:5541, HGNC:7315, HGNC:7315 DOI:10.1111/imm.12469|DOI:10.1186/s13059-019-1906-x +UBERON:0001250 red pulp of spleen Red Pulp CL:0000788 naive B Cell Naive B Cell HGNC:1633, HGNC:1698, HGNC:5480, HGNC:7315, HGNC:7315 DOI:10.1007/s00418-013-1172-z|DOI:10.1186/s13059-019-1906-x +UBERON:0013132 Penicillar Arteriole Penicillar Arteriole CL:0000788 naive B Cell Naive B Cell HGNC:1633, HGNC:1698, HGNC:5480, HGNC:5541, HGNC:7315, HGNC:7315 DOI:10.1111/imm.12469|DOI:10.1007/s00418-013-1172-z|DOI:10.1186/s13059-019-1906-x +UBERON:0004041 spleen primary B follicle Primary Follicle CL:0000788 naive B cell Naive B Cell HGNC:11648, HGNC:2428, HGNC:3612, HGNC:5480, HGNC:5480, HGNC:6015, HGNC:7315 DOI:10.1111/imm.12469|DOI:10.1186/s13059-019-1906-x +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0000794 CD8-positive, alpha-beta cytotoxic T cell Cytotoxic T Cells HGNC:1674, HGNC:1706, HGNC:4414, HGNC:4709, HGNC:9360 DOI:10.1126/sciimmunol.aau6085|DOI:10.1186/s13059-019-1906-x +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0000798 gamma-delta T cell Gamma/Delta T cells HGNC:12252, HGNC:12271, HGNC:12287, HGNC:1674, HGNC:3619 DOI:10.1016/j.immuni.2016.07.007|DOI:10.1186/s13059-019-1906-x +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0000815 regulatory T cell T Regulatory Cell HGNC:1608, HGNC:6008, HGNC:6106 DOI:10.1016/j.immuni.2012.09.020|DOI:10.1007/s00262-015-1729-x|DOI:10.1186/s13059-019-1906-x +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0000815 regulatory T cell T Regulatory Cell HGNC:1608, HGNC:1674, HGNC:1678, HGNC:6008, HGNC:6008, HGNC:6024, HGNC:6106, HGNC:6106, HGNC:9666 DOI:10.1016/j.immuni.2012.09.020|DOI:10.1007/s00262-015-1729-x|DOI:10.1186/s13059-019-1906-x +UBERON:0001251 Marginal Zone of Spleen Superficial Zone CL:0000818 transitional stage B cell Transitional Immature B Cells HGNC:1633, HGNC:1698, HGNC:3612, HGNC:7315, HGNC:7315 DOI:10.1093/intimm/14.2.157|DOI:10.1111/imm.12469|DOI:10.1186/s13059-019-1906-x +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0000818 transitional stage B cell Transitional Immature B Cells HGNC:11648, HGNC:25026, HGNC:2561, HGNC:3612, HGNC:3612, HGNC:5480, HGNC:5541, HGNC:598, HGNC:6015, HGNC:7315 DOI:10.1093/intimm/14.2.157|DOI:10.1038/s41421-020-0157-z +UBERON:0005196 spleen germinal center Germinal Center CL:0000844 germinal center B cell Germinal Center B Cell HGNC:11922, HGNC:13203, HGNC:5480, HGNC:7107, HGNC:7315 DOI:10.1371/journal.pone.0229778|DOI:10.1111/j.1365-2559.1986.tb02482.x|DOI:10.1111/j.1365-2559.1985.tb02841.x|DOI:10.1186/s13059-019-1906-x +UBERON:0001251 Marginal Zone of Spleen Superficial Zone CL:0000845 marginal zone B cell of spleen Superficial Zone B Cell HGNC:11922, HGNC:1636, HGNC:1636, HGNC:1637, HGNC:2336, HGNC:3612, HGNC:5480, HGNC:5541, HGNC:5541, HGNC:6018, HGNC:7315 DOI:10.1111/imm.12469|DOI:10.1182/blood-2004-01-0346|DOI:10.1182/blood-2004-01-0346 +UBERON:0001251 Marginal Zone of Spleen Superficial Zone CL:0000872 splenic marginal zone macrophage Macrophage HGNC:1631, HGNC:1690, HGNC:1693, HGNC:613 DOI:10.1111/imm.12469|DOI:10.1186/s13059-019-1906-x +UBERON:0001250 red pulp of spleen Red Pulp CL:0000874 splenic red pulp macrophage Macrophage HGNC:11127, HGNC:1631, HGNC:1690, HGNC:1693, HGNC:613, HGNC:7809 DOI:10.1111/imm.12469|DOI:10.1186/s13059-019-1906-x +UBERON:0001266 splenic cord Splenic Cord CL:0000874 splenic red pulp macrophage Red Pulp Macrophage HGNC:1631, HGNC:1690, HGNC:1693, HGNC:613 NoDOI|DOI:10.1182/bloodadvances.2017015008|DOI:10.1186/s13059-019-1906-x +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0000876 splenic white pulp macrophage Macrophages HGNC:1631, HGNC:1690, HGNC:1693, HGNC:613 DOI:10.1111/imm.12469|DOI:10.1186/s13059-019-1906-x +UBERON:0004041 spleen primary B follicle Primary Follicle CL:0000876 splenic white pulp macrophage Macrophage HGNC:1690, HGNC:1693, HGNC:613 DOI:10.1111/imm.12469|DOI:10.1007/s00418-011-0799-x|DOI:10.1186/s13059-019-1906-x +UBERON:0005196 spleen germinal center Germinal Center CL:0000877 splenic tingible body macrophage Tingible Body Macrophage HGNC:1690, HGNC:1693, HGNC:613 DOI:10.1007/s00418-011-0799-x|DOI:10.1186/s13059-019-1906-x +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell Naive CD4+ T Cell HGNC:1674, HGNC:1674, HGNC:1678, HGNC:1678, HGNC:1706, HGNC:1706, HGNC:9666 DOI:10.1126/sciimmunol.aau6085|DOI:10.1186/s13059-019-1906-x +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0000897 CD4-positive, alpha-beta memory T cell CD4+ Memory T Cell HGNC:11922, HGNC:1674, HGNC:1674, HGNC:1678, HGNC:1678, HGNC:1706, HGNC:9666 DOI:10.1111/j.1365-2362.2006.01626.x|DOI:10.1186/s13059-019-1906-x +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0000900 naive thymus-derived CD8-positive, alpha-beta T cell Naive CD8+ T Cell HGNC:1674, HGNC:1674, HGNC:1678, HGNC:1678, HGNC:1706, HGNC:1706, HGNC:9666 DOI:10.1126/sciimmunol.aau6085|DOI:10.1186/s13059-019-1906-x +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0000909 CD8-positive, alpha-beta memory T cell Non-Cytotoxic CD8+ Memory T Cell HGNC:11922, HGNC:1674, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:1706, HGNC:9666 DOI:10.1111/j.1365-2362.2006.01626.x|DOI:10.1186/s13059-019-1906-x +UBERON:0001266 splenic cord Splenic Cord CL:0000909 CD8-positive, alpha-beta memory T cell Memory CD8+ T Cell HGNC:1674, HGNC:1674, HGNC:1678, HGNC:1678, HGNC:1706, HGNC:1706, HGNC:9666 DOI:10.1126/sciimmunol.aau6085|DOI:10.1186/s13059-019-1906-x +UBERON:0013132 Penicillar Arteriole Penicillar Arteriole CL:0000972 class switched memory B cell Switched B Cell HGNC:1633, HGNC:1698, HGNC:7315, HGNC:7315 DOI:10.1007/s00418-013-1172-z|DOI:10.1186/s13059-019-1906-x +UBERON:0001250 red pulp of spleen Red Pulp CL:0000972 class switched memory B cell Switched B Cell HGNC:1633, HGNC:1698, HGNC:7315, HGNC:7315 DOI:10.1007/s00418-013-1172-z|DOI:10.1186/s13059-019-1906-x +UBERON:0001251 Marginal Zone of Spleen Superficial Zone CL:0000972 class switched memory B cell Switched B Cell HGNC:11922, HGNC:1633, HGNC:1698, HGNC:5480, HGNC:5541, HGNC:7315, HGNC:7315 DOI:10.1007/s00418-013-1172-z|DOI:10.1007/s00418-020-01924-3|DOI:10.1186/s13059-019-1906-x +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0000980 plasmablast Plasmablast HGNC:10658, HGNC:10658, HGNC:11922, HGNC:12801, HGNC:1667, HGNC:1698, HGNC:2561, HGNC:5525, HGNC:5541, HGNC:5541, HGNC:5713, HGNC:6119, HGNC:7315 NoDOI|DOI:10.1002/eji.200425442|DOI:10.1186/s13059-019-1906-x +UBERON:0005196 spleen germinal center Germinal Center CL:0000980 plasmablast Plasmablast HGNC:10658, HGNC:10658, HGNC:11922, HGNC:12801, HGNC:1667, HGNC:1698, HGNC:2561, HGNC:5525, HGNC:5541, HGNC:5713, HGNC:6119, HGNC:7315 NoDOI|DOI:10.1002/eji.200425442|DOI:10.1186/s13059-019-1906-x +UBERON:0001266 splenic cord Splenic Cord CL:0000980 plasmablast Plasmablast HGNC:10658, HGNC:10658, HGNC:11922, HGNC:12801, HGNC:1667, HGNC:1698, HGNC:2561, HGNC:5525, HGNC:5541, HGNC:5713, HGNC:6119, HGNC:7315 NoDOI|DOI:10.1186/s13059-019-1906-x +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0001050 effector CD8-positive, alpha-beta T cell CD8+ T Cell HGNC:1674, HGNC:1674, HGNC:1678, HGNC:1678, HGNC:1706, HGNC:1706 DOI:10.1126/sciimmunol.aau6085|DOI:10.1186/s13059-019-1906-x +UBERON:0001266 splenic cord Splenic Cord CL:0001055 CD14-positive, CD16-low monocyte Monocytes HGNC:1628, HGNC:1628, HGNC:2464, HGNC:3613, HGNC:3619, HGNC:3623, HGNC:6149 DOI:10.1182/bloodadvances.2017015008|DOI:10.1186/s13059-019-1906-x +UBERON:0005353 spleen perifollicular zone Perifollicular Zone CL:0001055 CD14-positive, CD16-low monocyte Monocytes HGNC:1628, HGNC:1628, HGNC:2464, HGNC:3613, HGNC:3619, HGNC:3623, HGNC:6149 DOI:10.1182/bloodadvances.2017015008|DOI:10.3389/fimmu.2019.01642|DOI:10.1186/s13059-019-1906-x +UBERON:0001266 splenic cord Splenic Cord CL:0001056 dendritic cell, human Dendritic Cell HGNC:6152 NoDOI +UBERON:0005353 spleen perifollicular zone Perifollicular Zone CL:0001058 plasmacytoid dendritic cell, human Plasmacytoid Dendritic Cell HGNC:13258, HGNC:13258, HGNC:6012, HGNC:6012, HGNC:6152, HGNC:8004 DOI:10.4049/jimmunol.1002632|DOI:10.1186/s13059-019-1906-x +UBERON:0001251 Marginal Zone of Spleen Superficial Zone CL:0001058 plasmacytoid dendritic cell, human Plasmacytoid Dendritic Cell HGNC:13258, HGNC:13258, HGNC:6012, HGNC:6012, HGNC:6152, HGNC:8004 DOI:10.4049/jimmunol.1002632|DOI:10.1111/imm.12469|DOI:10.1186/s13059-019-1906-x +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0001058 plasmacytoid dendritic cell, human Plasmacytoid Dendritic Cell HGNC:13258, HGNC:13258, HGNC:6012, HGNC:6012, HGNC:6152, HGNC:8004 DOI:10.4049/jimmunol.1002632|DOI:10.1186/s13059-019-1906-x +UBERON:0001251 Marginal Zone of Spleen Superficial Zone CL:0001078 group 3 innate lymphoid cell, human Innate Lymphoid Cell (Type 3) HGNC:10260, HGNC:16892, HGNC:348, HGNC:5361, HGNC:6024, HGNC:6342, HGNC:6373, HGNC:6732, HGNC:7656 DOI:10.1038/ni.2830|DOI:10.1186/s13059-019-1906-x +UBERON:0005196 spleen germinal center Germinal Center CL:0002038 T follicular helper cell T Follicular Helper Cell HGNC:1060, HGNC:1060, HGNC:1673, HGNC:1678, HGNC:1694, HGNC:5351, HGNC:5351, HGNC:8760, HGNC:8760 DOI:10.1182/blood-2014-03-563445|DOI:10.1186/s13059-019-1906-x +UBERON:0001959 white pulp of spleen White Pulp CL:0002138 endothelial cell of lymphatic vessel Lymphatic Endothelium Cell HGNC:12726, HGNC:14687, HGNC:29602, HGNC:29602, HGNC:8823, HGNC:9459 DOI:10.1369/jhc.4A6514.2005|NoDOI|GarrafaE,TraininiL,BenettiA,SabaE,FezzardiL,LorussoB,BorghettiP,BottioT,CeriE,PortolaniN,BonardlliS,GiuliniSM,AnnibaleG,CorradiA,ImbertiL,CarusoA|Isolation,purification,andheterogeneityofhumanlymphaticendothelialcellsfromdifferenttissues|Lymphology|2005Dec;38(4):159-66|PMID:16515224| +UBERON:0001473 lymphatic vessel Lymphatic Vessels CL:0002138 endothelial cell of lymphatic vessel Lymphatic Endothelium Cell HGNC:12726, HGNC:14687, HGNC:29602, HGNC:29602, HGNC:8823, HGNC:9459 DOI:10.1369/jhc.4A6514.2005|NoDOI|GarrafaE,TraininiL,BenettiA,SabaE,FezzardiL,LorussoB,BorghettiP,BottioT,CeriE,PortolaniN,BonardlliS,GiuliniSM,AnnibaleG,CorradiA,ImbertiL,CarusoA|Isolation,purification,andheterogeneityofhumanlymphaticendothelialcellsfromdifferenttissues|Lymphology|2005Dec;38(4):159-66|PMID:16515224| +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0002138 endothelial cell of lymphatic vessel Lymphatic Endothelium Cell HGNC:12726, HGNC:14687, HGNC:29602, HGNC:29602, HGNC:8823, HGNC:9459 DOI:10.1369%2Fjhc.4A6514.2005|NoDOI|GarrafaE,TraininiL,BenettiA,SabaE,FezzardiL,LorussoB,BorghettiP,BottioT,CeriE,PortolaniN,BonardlliS,GiuliniSM,AnnibaleG,CorradiA,ImbertiL,CarusoA|Isolation,purification,andheterogeneityofhumanlymphaticendothelialcellsfromdifferenttissues|Lymphology|2005Dec;38(4):159-66|PMID:16515224| +UBERON:0005353 spleen perifollicular zone Perifollicular Zone CL:0002394 myeloid dendritic cell cDC1 cDC1 myeloid dendritic cell HGNC:11784, HGNC:1625, HGNC:26705, HGNC:6152 DOI:10.4049/jimmunol.1002632|DOI:10.1046/j.1365-2567.1997.00328.x|DOI:10.1186/s13059-019-1906-x +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0002394 myeloid dendritic cell cDC1 cDC1 myeloid dendritic cell HGNC:11784, HGNC:1625, HGNC:26705, HGNC:6152 DOI:10.4049/jimmunol.1002632|DOI:10.1186/s13059-019-1906-x +UBERON:0005353 spleen perifollicular zone Perifollicular Zone CL:0002399 myeloid dendritic cell cDC2 cDC2 myeloid dendritic cell HGNC:1636, HGNC:1636, HGNC:16916, HGNC:6152, HGNC:9662 DOI:10.4049/jimmunol.1002632|DOI:10.1186/s13059-019-1906-x +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0002399 myeloid dendritic cell cDC2 cDC2 myeloid dendritic cell HGNC:1636, HGNC:1636, HGNC:16916, HGNC:6152, HGNC:9662 DOI:10.4049/jimmunol.1002632|DOI:10.1186/s13059-019-1906-x +UBERON:0003713 splenic vein Splenic Vein CL:0002543 vein endothelial cell Blood Endothelial Cells HGNC:11784, HGNC:12726, HGNC:1662, HGNC:1662, HGNC:8823, HGNC:8823 DOI:10.1007/s00418-007-0320-8|DOI:10.1016/j.aanat.2019.05.004|DOI10.1182/bloodadvances.2017015073 +UBERON:0005196 spleen germinal center Germinal Center CL:0009113 T follicular regulatory cell T Follicular Regulatory Cell HGNC:1060, HGNC:1060, HGNC:1674, HGNC:1678, HGNC:6008, HGNC:6008, HGNC:6106, HGNC:6106, HGNC:8760, HGNC:8760 DOI:10.1371/journal.pone.0140978 +UBERON:0005353 spleen perifollicular zone Perifollicular Zone CL:0011031 monocyte-derived dendritic cell Monocyte-Derived DC HGNC:3619, HGNC:6152 DOI:10.4049/jimmunol.1002632 +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0011031 monocyte-derived dendritic cell Monocyte-Derived DC HGNC:3619, HGNC:6152 DOI:10.4049/jimmunol.1002632 +UBERON:0001194 splenic artery Splenic Artery CL:1000413 endothelial cell of artery Blood Endothelial Cells HGNC:11784, HGNC:12726, HGNC:1662, HGNC:1662, HGNC:8823, HGNC:8823 DOI:10.1007/s00418-007-0320-8|DOI:10.1016/j.aanat.2019.05.004|DOI10.1182/bloodadvances.2017015073 +UBERON:0001251 Marginal Zone of Spleen Superficial Zone CL:1000489 reticular cell of splenic cord Fibroblastic Reticular Cell (FRC) HGNC:1037, HGNC:10620, HGNC:10639, HGNC:10639, HGNC:1118, HGNC:1318, HGNC:2545, HGNC:3357, HGNC:6765, HGNC:6765, HGNC:7036, HGNC:7098 DOI:10.1111/imm.12469|DOI:10.1038/s41467-019-09728-3 +UBERON:0001266 splenic cord Splenic Cord CL:1000489 reticular cell of splenic cord Red Pulp Reticular Cell HGNC:10672, HGNC:2770, HGNC:5344, HGNC:6139, HGNC:6140, HGNC:6141, HGNC:6153, HGNC:8803, HGNC:8804 DOI:10.1111/imm.12469|DOI:10.1038/nri2588 +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:1000489 reticular cell of splenic cord Fibroblastic Reticular Cell (FRC) HGNC:10617, HGNC:10617, HGNC:10620, HGNC:1118, HGNC:11784, HGNC:11801, HGNC:130, HGNC:1318, HGNC:1697, HGNC:2095, HGNC:2336, HGNC:2705, HGNC:3036, HGNC:3349, HGNC:3357, HGNC:6023, HGNC:6765, HGNC:7809 DOI:10.1111/imm.12469|NoDOI|DOI:10.1038/s41467-019-09728-3 +UBERON:0010401 spleen central arteriole Periarteriolar Lymphoid Sheath (PALS) CL:2000053 splenic endothelial cell Splenic endothelial cell HGNC:11784, HGNC:12726, HGNC:1662, HGNC:1662, HGNC:8823, HGNC:8823 DOI:10.1007/s00418-007-0320-8|DOI:10.1111/j.1365-2559.1986.tb02482.x|DOI:10.1111/j.1365-2559.1985.tb02841.x|DOI10.1182/bloodadvances.2017015073 +UBERON:0010399 Spleen Trabecular Artery Spleen Trabecular Artery CL:2000053 splenic endothelial cell Splenic endothelial cell HGNC:11784, HGNC:12726, HGNC:1662, HGNC:1662, HGNC:8823 DOI:10.1007/s00418-007-0320-8|DOI:10.1016/j.aanat.2019.05.004|DOI10.1182/bloodadvances.2017015073 +UBERON:0013132 Penicillar Arteriole Penicillar Arteriole CL:2000053 splenic endothelial cell Splenic endothelial cell HGNC:11784, HGNC:12726, HGNC:1662, HGNC:1662, HGNC:8823, HGNC:8823 DOI:10.1111/imm.12469|DOI:10.1111/j.1365-2559.1986.tb02482.x|DOI:10.1111/j.1365-2559.1985.tb02841.x|DOI10.1182/bloodadvances.2017015073 +UBERON:0001250 red pulp of spleen Red Pulp CL:2000053 splenic endothelial cell Splenic endothelial cell HGNC:11784, HGNC:12726, HGNC:1662, HGNC:1662, HGNC:8823 DOI:10.1007/s00418-007-0320-8|DOI10.1182/bloodadvances.2017015073 +UBERON:0001250 red pulp of spleen Red Pulp CL:2000053 splenic endothelial cell Splenic endothelial cell HGNC:12663, HGNC:12726, HGNC:12726, HGNC:1662, HGNC:1662, HGNC:8823, HGNC:8823 DOI:10.1017/CBO9780511545979|DOI10.1182/bloodadvances.2017015073 +UBERON:0001250 red pulp of spleen Red Pulp CL:2000053 splenic endothelial cell Splenic endothelial cell HGNC:11784, HGNC:12726, HGNC:1662, HGNC:1662, HGNC:1706, HGNC:8823, HGNC:8823 DOI:10.1007/s00418-007-0320-8|DOI:10.1016/j.aanat.2019.05.004|DOI10.1182/bloodadvances.2017015073 +UBERON:0001959 white pulp of spleen White Pulp CL:2000053 splenic endothelial cell Splenic endothelial cell HGNC:12726, HGNC:1662, HGNC:1662, HGNC:8823, HGNC:8823 DOI:10.1111/imm.12469|DOI:10.1016/j.aanat.2019.05.004|DOI10.1182/bloodadvances.2017015073 +UBERON:0010400 Spleen Trabecular Vein Spleen Trabecular Vein CL:2000053 splenic endothelial cell Splenic endothelial cell HGNC:11784, HGNC:12726, HGNC:1662, HGNC:1662, HGNC:8823 DOI:10.1007/s00418-007-0320-8|DOI10.1182/bloodadvances.2017015073 +UBERON:0001251 Marginal Zone of Spleen Superficial Zone CL:2000053 splenic endothelial cell Splenic endothelial cell HGNC:12726, HGNC:1662, HGNC:1662, HGNC:8823, HGNC:8823 DOI:10.1111/imm.12469|DOI:10.1016/j.aanat.2019.05.004|DOI10.1182/bloodadvances.2017015073 +UBERON:0003713 splenic vein Splenic Vein CL:2000053 splenic endothelial cell Splenic endothelial cell HGNC:11784, HGNC:12726, HGNC:1662, HGNC:1662, HGNC:8823, HGNC:8823 DOI:10.1007/s00418-007-0320-8|DOI10.1182/bloodadvances.2017015073 +UBERON:0001194 Splenic Artery Splenic Artery CL:2000053 splenic endothelial cell Splenic endothelial cell HGNC:11784, HGNC:12726, HGNC:1662, HGNC:1662, HGNC:8823, HGNC:8823 DOI:10.1111/imm.12469|DOI:10.1111/j.1365-2559.1986.tb02482.x|DOI:10.1111/j.1365-2559.1985.tb02841.x|DOI10.1182/bloodadvances.2017015073 diff --git a/logs/ct_loc_markers/Thymus_report.tsv b/logs/ct_loc_markers/Thymus_report.tsv new file mode 100644 index 000000000..6957fd0ac --- /dev/null +++ b/logs/ct_loc_markers/Thymus_report.tsv @@ -0,0 +1,65 @@ +Terminal AS/ID Terminal AS/label Terminal AS/user_label Terminal CT/ID Terminal CT/label Terminal CT/user_label Markers References +UBERON:0018243 thymic artery thymic artery CL:0000071 blood vessel endothelial cell blood endothelial cell HGNC:10044, HGNC:11220, HGNC:11853, HGNC:13635, HGNC:5397, HGNC:633, HGNC:6722, HGNC:7, HGNC:7899, HGNC:8823, HGNC:9844 DOI:10.1126/science.aay3224|DOI:10.1080/01926230600865549|PearseG|Normalstructure,functionandhistologyofthethymus|ToxicolPathol|2006;34(5):504-14|doi:10|1080/01926230600865549|PMID:17067941| +UBERON:0001591 thymic vein thymic vein CL:0000071 blood vessel endothelial cell blood endothelial cell HGNC:10044, HGNC:11220, HGNC:11853, HGNC:13635, HGNC:5397, HGNC:633, HGNC:6722, HGNC:7, HGNC:7899, HGNC:8823, HGNC:9844 DOI:10.1126/science.aay3224|DOI:10.1080/01926230600865549|PearseG|Normalstructure,functionandhistologyofthethymus|ToxicolPathol|2006;34(5):504-14|doi:10|1080/01926230600865549|PMID:17067941| +UBERON:0004791 thymus trabecula thymus trabecula CL:0000097 mast cell mast cell HGNC:11925, HGNC:12019, HGNC:14120, HGNC:17890, HGNC:21041, HGNC:2298, HGNC:248, HGNC:4171, HGNC:5998, HGNC:6644 DOI:10.1097/00000478-199003000-00010|DOI:10.1126/science.aay3224 +UBERON:0003988 thymus corticomedullary boundary corticomedullary boundary of thymus CL:0000576 monocyte monocyte HGNC:10489, HGNC:10494, HGNC:10496, HGNC:10498, HGNC:10499, HGNC:1804, HGNC:2464, HGNC:2545, HGNC:3623, HGNC:6740 DOI:10.1126/science.aay3224 +UBERON:0002124 medulla of thymus medulla of thymus CL:0000623 natural killer cell natural killer cell HGNC:10646, HGNC:12449, HGNC:13342, HGNC:24961, HGNC:28783, HGNC:4414, HGNC:6373, HGNC:6374, HGNC:6378, HGNC:7830 DOI:10.1126/science.aay3224|DOI:10.4049/jimmunol.166.4.2194 +UBERON:0004791 thymus trabecula thymus trabecula CL:0000764 erythroid lineage cell erythroid HGNC:1063, HGNC:18075, HGNC:28036, HGNC:397, HGNC:4823, HGNC:4824, HGNC:4826, HGNC:4827, HGNC:4831, HGNC:4832 DOI:10.1126/science.aay3224|NoDOI +UBERON:0002123 cortex of thymus cortex of thymus CL:0000764 erythroid lineage cell erythroid HGNC:1063, HGNC:18075, HGNC:28036, HGNC:397, HGNC:4823, HGNC:4824, HGNC:4826, HGNC:4827, HGNC:4831, HGNC:4832 DOI:10.1126/science.aay3224|NoDOI +UBERON:0004791 thymus trabecula thymus trabecula CL:0000771 eosinophil eosinophil HGNC:1659, HGNC:6059, HGNC:9362 DOI:10.1097/00000478-199003000-00010|DOI:10.1111/j.1440-1827.1995.tb03518.x.|DOI:10.2353/ajpath.2009.090015|LeeI,YuE,GoodRA,IkeharaS|Presenceofeosinophilicprecursorsinthehumanthymus:evidenceforintra-thymicdifferentiationofcellsineosinophiliclineage|PatholInt|1995Sep;45(9):655-62|doi:10|1111/j|1440-1827|1995|tb03518|x|PMID:8548038| +UBERON:0003988 thymus corticomedullary boundary corticomedullary boundary of thymus CL:0000771 eosinophil eosinophil HGNC:1659, HGNC:6059, HGNC:9362 DOI:10.1097/00000478-199003000-00010|DOI:10.1111/j.1440-1827.1995.tb03518.x.|DOI:10.2353/ajpath.2009.090015|LeeI,YuE,GoodRA,IkeharaS|Presenceofeosinophilicprecursorsinthehumanthymus:evidenceforintra-thymicdifferentiationofcellsineosinophiliclineage|PatholInt|1995Sep;45(9):655-62|doi:10|1111/j|1440-1827|1995|tb03518|x|PMID:8548038| +UBERON:0002124 medulla of thymus medulla of thymus CL:0000771 eosinophil eosinophil HGNC:1659, HGNC:6059, HGNC:9362 DOI:10.1097/00000478-199003000-00010|DOI:10.1111/j.1440-1827.1995.tb03518.x|DOI:10.2353/ajpath.2009.090015|LeeI,YuE,GoodRA,IkeharaS|Presenceofeosinophilicprecursorsinthehumanthymus:evidenceforintra-thymicdifferentiationofcellsineosinophiliclineage|PatholInt|1995Sep;45(9):655-62|doi:10|1111/j|1440-1827|1995|tb03518|x|PMID:8548038| +UBERON:0003988 thymus corticomedullary boundary corticomedullary boundary of thymus CL:0000786 plasma cell plasma cell HGNC:10658, HGNC:11326, HGNC:12801, HGNC:14236, HGNC:1633, HGNC:1653, HGNC:18624, HGNC:23400, HGNC:30125, HGNC:5525, HGNC:5525, HGNC:5527, HGNC:5527, HGNC:5541, HGNC:5713, HGNC:5716, HGNC:7315 DOI:10.1126/science.aay3224|DOI:10.1126/sciimmunol.aah4447|DOI:10.1080/01926230600865549|PearseG|Normalstructure,functionandhistologyofthethymus|ToxicolPathol|2006;34(5):504-14|doi:10|1080/01926230600865549|PMID:17067941| +UBERON:0002124 medulla of thymus medulla of thymus CL:0000788 naive B cell naive B cell HGNC:11648, HGNC:1633, HGNC:1643, HGNC:1698, HGNC:3612, HGNC:4944, HGNC:4947, HGNC:5480, HGNC:5480, HGNC:5541, HGNC:5541, HGNC:591, HGNC:7315, HGNC:7315 DOI:10.1126/science.aay3224|DOI:10.1126/sciimmunol.aah4447 +UBERON:0002124 medulla of thymus medulla of thymus CL:0000798 gamma-delta T cell gamma-delta T cell HGNC:10720, HGNC:10827, HGNC:11922, HGNC:12252, HGNC:12253, HGNC:12271, HGNC:14240, HGNC:1610, HGNC:1634, HGNC:1674, HGNC:18874, HGNC:29109, HGNC:307, HGNC:3621, HGNC:533, HGNC:5438, HGNC:9666 DOI:10.1126/science.aay3224|DOI:10.4049/jimmunol.1303119 +UBERON:0002123 cortex of thymus cortex of thymus CL:0000809 double-positive, alpha-beta thymocyte double positive thymocyte HGNC:11922, HGNC:12556, HGNC:14240, HGNC:14415, HGNC:1634, HGNC:1634, HGNC:1635, HGNC:1638, HGNC:1678, HGNC:1685, HGNC:1694, HGNC:1695, HGNC:1706, HGNC:1706, HGNC:1707, HGNC:26009 DOI:10.1126/science.aay3224|DOI:10.3389/fimmu.2019.00447. +UBERON:0004791 thymus trabecula thymus trabecula CL:0000866 thymic macrophage macrophage HGNC:10044, HGNC:10751, HGNC:10909, HGNC:1241, HGNC:1242, HGNC:1245, HGNC:13378, HGNC:1631, HGNC:1641, HGNC:1693, HGNC:18628, HGNC:5344, HGNC:613, HGNC:6149, HGNC:6152, HGNC:6740, HGNC:9472 DOI:10.1126/science.aay3224|DOI:10.1016/j.imbio.2008.07.032.|DOI:10.1016/s0065-2776(08)60900-1 +UBERON:0002122 capsule of thymus capsule of thymus CL:0000866 thymic macrophage macrophage HGNC:10044, HGNC:10751, HGNC:10909, HGNC:1241, HGNC:1242, HGNC:1245, HGNC:13378, HGNC:1631, HGNC:1641, HGNC:1693, HGNC:18628, HGNC:5344, HGNC:613, HGNC:6149, HGNC:6152, HGNC:6740, HGNC:9472 DOI:10.1126/science.aay3224|DOI:10.1016/j.imbio.2008.07.032.|DOI:10.1016/s0065-2776(08)60900-1 +UBERON:0003988 thymus corticomedullary boundary corticomedullary boundary of thymus CL:0000866 thymic macrophage macrophage HGNC:10044, HGNC:10751, HGNC:10909, HGNC:1241, HGNC:1242, HGNC:1245, HGNC:13378, HGNC:1631, HGNC:1641, HGNC:1693, HGNC:18628, HGNC:5344, HGNC:613, HGNC:6149, HGNC:6152, HGNC:6740, HGNC:9472 DOI:10.1126/science.aay3224|DOI:10.1016/j.imbio.2008.07.032|DOI:10.1016/s0065-2776(08)60900-1 +UBERON:0002124 medulla of thymus medulla of thymus CL:0000882 thymic medullary macrophage macrophage HGNC:10044, HGNC:10751, HGNC:1241, HGNC:1242, HGNC:1245, HGNC:13378, HGNC:1631, HGNC:1641, HGNC:1693, HGNC:18628, HGNC:5344, HGNC:613, HGNC:6149, HGNC:6152, HGNC:6740, HGNC:9472 DOI:10.1126/science.aay3224|DOI:10.1016/j.imbio.2008.07.032|DOI:10.1016/s0065-2776(08)60900-1 +UBERON:0006936 thymus subcapsular epithelium thymus subcapsular epithelium CL:0000883 thymic cortical macrophage macrophage HGNC:10044, HGNC:10751, HGNC:10909, HGNC:11881, HGNC:1241, HGNC:1242, HGNC:1245, HGNC:13378, HGNC:18628, HGNC:613, HGNC:9472 DOI:10.1016/s0065-2776(08)60900-1 +UBERON:0002124 medulla of thymus medulla of thymus CL:0000897 CD4-positive, alpha-beta memory T cell CD4+ T memory T cell HGNC:10359, HGNC:1608, HGNC:1694, HGNC:20369, HGNC:3128, HGNC:533, HGNC:570, HGNC:6024, HGNC:6347, HGNC:6711 DOI:10.1126/science.aay3224 +UBERON:0002124 medulla of thymus medulla of thymus CL:0000899 T-helper 17 cell Th17 cell HGNC:11185, HGNC:11935, HGNC:12930, HGNC:1678, HGNC:17150, HGNC:17946, HGNC:19254, HGNC:533, HGNC:6024, HGNC:6373, HGNC:6373 DOI:10.1126/science.aay3224|DOI:10.1084/jem.20080397 +UBERON:0002124 medulla of thymus medulla of thymus CL:0000909 CD8-positive, alpha-beta memory T cell CD8+ T memory HGNC:10630, HGNC:10632, HGNC:1706, HGNC:1707, HGNC:20369, HGNC:24313, HGNC:2479, HGNC:26021, HGNC:4711, HGNC:7830 DOI:10.1126/science.aay3224 +UBERON:0002124 medulla of thymus medulla of thymus CL:0000914 immature NKT cell immature NKT cell HGNC:10632, HGNC:10645, HGNC:10720, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:21574, HGNC:21872, HGNC:2479, HGNC:4711, HGNC:4712, HGNC:5438, HGNC:6014, HGNC:6024, HGNC:6373, HGNC:6477, HGNC:7830, HGNC:9666 DOI:10.1126/science.aay3224|DOI:10.1111/cei.12045|DOI:10.1002/eji.200425958 +UBERON:0002124 medulla of thymus medulla of thymus CL:0000934 CD4-positive, alpha-beta cytotoxic T cell cytotoxic CD4 T cell HGNC:13253, HGNC:13432, HGNC:17362, HGNC:2479, HGNC:3070, HGNC:4708, HGNC:4711, HGNC:5962, HGNC:9346, HGNC:9991 DOI:10.1126/science.aay3224 +UBERON:0002124 medulla of thymus medulla of thymus CL:0000940 mucosal invariant T cell mucosal associated invariant T cell HGNC:10260, HGNC:11922, HGNC:12930, HGNC:1678, HGNC:1706, HGNC:5988, HGNC:6373 DOI:10.1038/ni.3565. +UBERON:0002124 medulla of thymus medulla of thymus CL:0000942 thymic plasmacytoid dendritic cell plasmacytoid dendritic cell HGNC:12524, HGNC:13258, HGNC:15503, HGNC:1659, HGNC:18111, HGNC:19254, HGNC:23792, HGNC:4709, HGNC:500, HGNC:5358, HGNC:5713, HGNC:6012, HGNC:6012, HGNC:6122, HGNC:6152, HGNC:9666 DOI:10.1126/science.aay3224|DOI:10.1172/JCI11734|DOI:10.1182/blood-2008-11-187633 +UBERON:0002123 cortex of thymus cortex of thymus CL:0000942 thymic plasmacytoid dendritic cell plasmacytoid dendritic cell HGNC:12524, HGNC:13258, HGNC:15503, HGNC:1659, HGNC:18111, HGNC:19254, HGNC:23792, HGNC:31963, HGNC:4709, HGNC:500, HGNC:5358, HGNC:5713, HGNC:6012, HGNC:6012, HGNC:6122, HGNC:6152, HGNC:9666 DOI:10.1126/science.aay3224|DOI:10.1172/JCI11734.|DOI:10.1182/blood-2008-11-187633 +UBERON:0003988 thymus corticomedullary boundary corticomedullary boundary of thymus CL:0000970 unswitched memory B cell memory B cell HGNC:11922, HGNC:1633, HGNC:16837, HGNC:18153, HGNC:18233, HGNC:206, HGNC:2360, HGNC:3128, HGNC:4942, HGNC:4947, HGNC:5478, HGNC:5541, HGNC:7315, HGNC:7315 DOI:10.1126/science.aay3224|DOI:10.1126/sciimmunol.aah4447|DOI:10.1080/01926230600865549|PearseG|Normalstructure,functionandhistologyofthethymus|ToxicolPathol|2006;34(5):504-14|doi:10|1080/01926230600865549|PMID:17067941| +UBERON:0003988 thymus corticomedullary boundary corticomedullary boundary of thymus CL:0000972 class switched memory B cell memory B cell HGNC:11922, HGNC:1633, HGNC:16837, HGNC:18153, HGNC:18233, HGNC:206, HGNC:2360, HGNC:3128, HGNC:4942, HGNC:4947, HGNC:5478, HGNC:7315, HGNC:7315 DOI:10.1126/science.aay3224|DOI:10.1126/sciimmunol.aah4447|DOI:10.1080/01926230600865549|PearseG|Normalstructure,functionandhistologyofthethymus|ToxicolPathol|2006;34(5):504-14|doi:10|1080/01926230600865549|PMID:17067941| +UBERON:0003988 thymus corticomedullary boundary corticomedullary boundary of thymus CL:0000980 plasmablast plasmablast HGNC:11922, HGNC:1633, HGNC:6119 DOI:10.1126/science.aay3224|DOI:10.1080/01926230600865549|PearseG|Normalstructure,functionandhistologyofthethymus|ToxicolPathol|2006;34(5):504-14|doi:10|1080/01926230600865549|PMID:17067941| +UBERON:0003988 thymus corticomedullary boundary corticomedullary boundary of thymus CL:0001070 beige adipocyte beige adipocyte HGNC:11592 DOI:10.3389/fendo.2019.00369|DOI:10.1007/s11357-013-9564-5 +UBERON:0001013 adipose tissue adipose tissue CL:0001070 beige adipocyte beige adipocyte HGNC:11592 DOI:10.3389/fendo.2019.00369|DOI:10.1007/s11357-013-9564-5 +UBERON:0002124 medulla of thymus medulla of thymus CL:0001078 group 3 innate lymphoid cell, human group 3 innate lymphoid cell HGNC:10494, HGNC:12253, HGNC:14189, HGNC:1804, HGNC:19084, HGNC:28324, HGNC:6024, HGNC:6024, HGNC:6342, HGNC:6373, HGNC:6373, HGNC:6463, HGNC:6711, HGNC:6732 DOI:10.1126/science.aay3224|DOI:10.3389/fimmu.2017.01047 +UBERON:0002124 medulla of thymus medulla of thymus CL:0002038 T follicular helper cell T follicular helper cell HGNC:1594, HGNC:18683, HGNC:19829, HGNC:24944, HGNC:30881, HGNC:3766, HGNC:3797, HGNC:6024, HGNC:7717, HGNC:7981 DOI:10.1126/science.aay3224 +UBERON:0002124 medulla of thymus medulla of thymus CL:0002059 CD8alpha-positive thymic conventional dendritic cell conventional dendritic cell 1 HGNC:11784, HGNC:14399, HGNC:1625, HGNC:1659, HGNC:1678, HGNC:1703, HGNC:20369, HGNC:26258, HGNC:26705, HGNC:28915, HGNC:2959, HGNC:4938, HGNC:5358, HGNC:6149, HGNC:6152, HGNC:6562, HGNC:6740, HGNC:9662, HGNC:9666 DOI:10.1126/science.aay3224|DOI:10.1172/JCI11734|DOI:10.1038/cti.2015.21 +UBERON:0003988 thymus corticomedullary boundary corticomedullary boundary of thymus CL:0002059 CD8alpha-positive thymic conventional dendritic cell conventional dendritic cell 1 HGNC:11784, HGNC:14399, HGNC:1625, HGNC:1659, HGNC:1678, HGNC:1703, HGNC:20369, HGNC:26258, HGNC:26705, HGNC:28915, HGNC:2959, HGNC:4938, HGNC:5358, HGNC:6149, HGNC:6152, HGNC:6562, HGNC:6740, HGNC:9662, HGNC:9666 DOI:10.1126/science.aay3224|DOI:10.1172/JCI11734|DOI:10.1038/cti.2015.21 +UBERON:0010397 efferent lymphatic vessel efferent lymphatic CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelial cell HGNC:10620, HGNC:10690, HGNC:11757, HGNC:11760, HGNC:14687, HGNC:29612, HGNC:29990, HGNC:3560, HGNC:7178, HGNC:8038, HGNC:9459, HGNC:9459 DOI:10.1126/science.aay3224|DOI:10.1080/01926230600865549|PearseG|Normalstructure,functionandhistologyofthethymus|ToxicolPathol|2006;34(5):504-14|doi:10|1080/01926230600865549|PMID:17067941| +UBERON:0003846 thymus epithelium thymus epithelium CL:0002364 cortical thymic epithelial cell cortical thymic epithelial cell HGNC:10624, HGNC:11529, HGNC:1799, HGNC:18901, HGNC:2067, HGNC:2287, HGNC:2538, HGNC:31963, HGNC:31963, HGNC:32322, HGNC:4403, HGNC:9093, HGNC:9480, HGNC:9538, HGNC:9546, HGNC:9666 DOI:10.1126/science.aay3224|DOI:10.1182/blood-2008-11-187633.|DOI:10.3791/50951 +UBERON:0006936 thymus subcapsular epithelium thymus subcapsular epithelium CL:0002425 early T lineage precursor early thymic progenitor HGNC:11241, HGNC:13222, HGNC:1633, HGNC:1662, HGNC:1662, HGNC:1681, HGNC:1695, HGNC:1695, HGNC:1699, HGNC:1699, HGNC:5358, HGNC:7218 DOI:10.1016/j.immuni.2020.03.019|DOI:10.3389/fimmu.2019.00447.|LavaertM,LiangKL,VandammeN,ParkJE,RoelsJ,KowalczykMS,LiB,AshenbergO,TabakaM,DionneD,TickleTL,SlyperM,Rozenblatt-RosenO,VandekerckhoveB,LeclercqG,RegevA,VanVlierbergheP,GuilliamsM,TeichmannSA,SaeysY,TaghonT|IntegratedscRNA-SeqIdentifiesHumanPostnatalThymusSeedingProgenitorsandRegulatoryDynamicsofDifferentiatingImmatureThymocytes|Immunity|2020Jun16;52(6):1088-1104|e6|doi:10|1016/j|immuni|2020|03|019|Epub2020Apr17|PMID:32304633| +UBERON:0002124 medulla of thymus medulla of thymus CL:0002436 mature CD4 single-positive thymocyte CD4+ T single positive thymocyte HGNC:10307, HGNC:10720, HGNC:11922, HGNC:1464, HGNC:1634, HGNC:1678, HGNC:1694, HGNC:22404, HGNC:245, HGNC:26192, HGNC:5361, HGNC:78, HGNC:9666 DOI:10.1126/science.aay3224|DOI:10.3389/fimmu.2019.00447|DOI:10.1038/s41467-021-21346-6 +UBERON:0003988 thymus corticomedullary boundary corticomedullary boundary of thymus CL:0002436 mature CD4 single-positive thymocyte CD4+ T single positive thymocyte HGNC:10307, HGNC:10720, HGNC:1464, HGNC:1634, HGNC:1667, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:22404, HGNC:245, HGNC:26192, HGNC:34345, HGNC:5361, HGNC:78, HGNC:9666 DOI:10.1172/JCI7558. +UBERON:0003988 thymus corticomedullary boundary corticomedullary boundary of thymus CL:0002437 mature CD8 single-positive thymocyte CD8+ T single positive thymocyte HGNC:11395, HGNC:163, HGNC:1634, HGNC:1667, HGNC:1674, HGNC:1678, HGNC:1695, HGNC:1706, HGNC:1706, HGNC:1707, HGNC:17200, HGNC:1933, HGNC:4712, HGNC:6024, HGNC:9666 DOI:10.1172/JCI7558. +UBERON:0002124 medulla of thymus medulla of thymus CL:0002437 mature CD8 single-positive thymocyte CD8+ T single positive thymocyte HGNC:11395, HGNC:11922, HGNC:163, HGNC:1634, HGNC:1694, HGNC:1695, HGNC:1706, HGNC:1706, HGNC:1707, HGNC:17200, HGNC:1933, HGNC:4712, HGNC:6024, HGNC:9666 DOI:10.1126/science.aay3224|DOI:10.3389/fimmu.2019.00447|DOI:10.1038/s41467-021-21346-6 +UBERON:0002124 medulla of thymus medulla of thymus CL:0002460 CD8alpha-negative thymic conventional dendritic cell conventional dendritic cell 2 HGNC:11784, HGNC:1625, HGNC:1636, HGNC:1659, HGNC:1678, HGNC:16916, HGNC:1703, HGNC:19084, HGNC:2535, HGNC:404, HGNC:4620, HGNC:4942, HGNC:4944, HGNC:6149, HGNC:6152, HGNC:6562, HGNC:7183, HGNC:9662, HGNC:9666 DOI:10.1126/science.aay3224|DOI:10.1172/JCI11734|DOI:10.1038/cti.2015.21 +UBERON:0003988 thymus corticomedullary boundary corticomedullary boundary of thymus CL:0002460 CD8alpha-negative thymic conventional dendritic cell conventional dendritic cell 2 HGNC:11784, HGNC:1625, HGNC:1636, HGNC:1659, HGNC:1678, HGNC:16916, HGNC:1703, HGNC:19084, HGNC:2535, HGNC:404, HGNC:4620, HGNC:4942, HGNC:4944, HGNC:6149, HGNC:6152, HGNC:6562, HGNC:7183, HGNC:9662, HGNC:9666 DOI:10.1126/science.aay3224|DOI:10.1172/JCI11734|DOI:10.1038/cti.2015.21 +UBERON:0002124 medulla of thymus medulla of thymus CL:0002677 naive regulatory T cell regulatory T cells HGNC:10494, HGNC:13177, HGNC:1678, HGNC:16830, HGNC:2505, HGNC:26838, HGNC:33701, HGNC:4183, HGNC:6106, HGNC:6106, HGNC:8987, HGNC:9108, HGNC:958 DOI:10.1126/science.aay3224|DOI:10.3389/fimmu.2019.00447|DOI:10.1038/nature03886 +UBERON:0002124 medulla of thymus medulla of thymus CL:0009068 CD8aa(I) thymocyte CD8aa(I) thymocyte HGNC:11922, HGNC:12029, HGNC:1639, HGNC:1653, HGNC:1706, HGNC:6529, HGNC:6551, HGNC:8044, HGNC:9403, HGNC:9659 DOI:10.1126/science.aay3224 +UBERON:0002124 medulla of thymus medulla of thymus CL:0009069 CD8aa(II) thymocyte CD8aa(II) thymocyte HGNC:12276, HGNC:13177, HGNC:14013, HGNC:163, HGNC:1695, HGNC:16977, HGNC:2546, HGNC:28495, HGNC:37244, HGNC:7154 DOI:10.1126/science.aay3224 +UBERON:0003988 thymus corticomedullary boundary corticomedullary boundary of thymus CL:0009070 corticomedullary thymic epithelial cell corticomedullary thymic epithelial cell HGNC:10618, HGNC:10624, HGNC:11701, HGNC:11761, HGNC:19317, HGNC:21198, HGNC:2538, HGNC:2654, HGNC:6442, HGNC:9093 DOI:10.1126/science.aay3224|DOI:10.1038/s41467-021-21346-6 +UBERON:0003846 thymus epithelium thymus epithelium CL:0009071 medullary thymic epithelial cell type 1 medullary thymic epithelial cell type 1 HGNC:10513, HGNC:10617, HGNC:11529, HGNC:1799, HGNC:1907, HGNC:2095, HGNC:3778, HGNC:6416, HGNC:6421, HGNC:6421, HGNC:6436, HGNC:6442, HGNC:738, HGNC:9592, HGNC:9666 DOI:10.1126/science.aay3224|DOI:10.1038/s41467-021-21346-6|DOI:10.3791/50951 +UBERON:0003846 thymus epithelium thymus epithelium CL:0009072 medullary thymic epithelial cell type 2 medullary thymic epithelial cell type 2 HGNC:10617, HGNC:11141, HGNC:11529, HGNC:12692, HGNC:1452, HGNC:1799, HGNC:24757, HGNC:2481, HGNC:360, HGNC:3673, HGNC:4942, HGNC:6427, HGNC:6442, HGNC:8028, HGNC:9666 DOI:10.1126/science.aay3224|DOI:10.1038/s41467-021-21346-6|DOI:10.1080/01926230600865549|DOI:10.3791/50951|PearseG|Normalstructure,functionandhistologyofthethymus|ToxicolPathol|2006;34(5):504-14|doi:10|1080/01926230600865549|PMID:17067941| +UBERON:0003846 thymus epithelium thymus epithelium CL:0009073 medullary thymic epithelial cell type 3 medullary thymic epithelial cell type 3 HGNC:10499, HGNC:10773, HGNC:11529, HGNC:1240, HGNC:13348, HGNC:15464, HGNC:17637, HGNC:1799, HGNC:18180, HGNC:2766, HGNC:6436, HGNC:6443, HGNC:9666 DOI:10.1126/science.aay3224|DOI:10.1080/01926230600865549|DOI:10.3791/50951|PearseG|Normalstructure,functionandhistologyofthethymus|ToxicolPathol|2006;34(5):504-14|doi:10|1080/01926230600865549|PMID:17067941| +UBERON:0003987 Hassall's corpuscle Hassall's corpuscle CL:0009073 medullary thymic epithelial cell type 3 medullary thymic epithelial cell type 3 HGNC:10499, HGNC:10773, HGNC:11195, HGNC:11529, HGNC:1240, HGNC:13348, HGNC:15464, HGNC:17637, HGNC:1799, HGNC:18180, HGNC:2766, HGNC:30743, HGNC:6187, HGNC:6413, HGNC:6436, HGNC:6443, HGNC:9666 DOI:10.1038/nature03886.|DOI:10.1038/s41467-021-21346-6|DOI:10.4049/jimmunol.1002151|DOI:10.3791/50951 +UBERON:0003846 thymus epithelium thymus epithelium CL:0009074 medullary thymic epithelial cell type 4 medullary thymic epithelial cell type 4 HGNC:1079, HGNC:11529, HGNC:11529, HGNC:11529, HGNC:1799, HGNC:20796, HGNC:2700, HGNC:27364, HGNC:3815, HGNC:533, HGNC:542, HGNC:6430, HGNC:6446, HGNC:6690, HGNC:9666 DOI:10.1126/science.aay3224|DOI:10.1038/s41586-018-0345-2|DOI:10.1080/01926230600865549|DOI:10.3791/50951|PearseG|Normalstructure,functionandhistologyofthethymus|ToxicolPathol|2006;34(5):504-14|doi:10|1080/01926230600865549|PMID:17067941| +UBERON:0003846 thymus epithelium thymus epithelium CL:0009075 myo-medullary thymic epithelial cell myo-medullary thymic epithelial cell HGNC:11529, HGNC:11946, HGNC:11950, HGNC:12011, HGNC:12403, HGNC:129, HGNC:16905, HGNC:1799, HGNC:29824, HGNC:7612, HGNC:7720, HGNC:7860, HGNC:9666 DOI:10.1126/science.aay3224|DOI:10.1038/s41467-021-21346-6|DOI:10.1080/01926230600865549|DOI:10.3791/50951|PearseG|Normalstructure,functionandhistologyofthethymus|ToxicolPathol|2006;34(5):504-14|doi:10|1080/01926230600865549|PMID:17067941| +UBERON:0003846 thymus epithelium thymus epithelium CL:0009076 neuro-medullary thymic epithelial cell neuro-medullary thymic epithelial cell HGNC:1036, HGNC:11506, HGNC:11529, HGNC:1461, HGNC:1799, HGNC:18254, HGNC:2045, HGNC:24579, HGNC:26735, HGNC:6836, HGNC:7860, HGNC:9666 DOI:10.1126/science.aay3224|DOI:10.1038/s41467-021-21346-6|DOI:10.1080/01926230600865549|DOI:10.3791/50951|PearseG|Normalstructure,functionandhistologyofthethymus|ToxicolPathol|2006;34(5):504-14|doi:10|1080/01926230600865549|PMID:17067941| +UBERON:0006936 thymus subcapsular epithelium thymus subcapsular epithelium CL:0009077 subcapsular thymic epithelial cell subcapsular cortical epithelial cell HGNC:11881, HGNC:9623 DOI:10.1016/s0065-2776(08)60900-1 +UBERON:0002384 connective tissue connective tissue CL:0009078 thymic fibroblast type 1 thymic capsular fibroblast HGNC:11220, HGNC:11309, HGNC:1346, HGNC:15847, HGNC:20866, HGNC:26511, HGNC:3011, HGNC:7035, HGNC:9592, HGNC:9630 DOI:10.1126/science.aay3224 +UBERON:0002384 connective tissue connective tissue CL:0009079 thymic fibroblast type 2 thymic interlobular fibroblast HGNC:2191, HGNC:2197, HGNC:2198, HGNC:2201, HGNC:3603, HGNC:3778, HGNC:5475, HGNC:6724, HGNC:7060, HGNC:8126 DOI:10.1126/science.aay3224 +UBERON:0006936 thymus subcapsular epithelium thymus subcapsular epithelium CL:0009081 specified double negative thymocyte double negative thymocyte 2 HGNC:11241, HGNC:11639, HGNC:13222, HGNC:1662, HGNC:1674, HGNC:1681, HGNC:1685, HGNC:1695, HGNC:1695, HGNC:1699, HGNC:21290, HGNC:7154 DOI:10.1016/j.immuni.2020.03.019|DOI:10.3389/fimmu.2019.00447.|LavaertM,LiangKL,VandammeN,ParkJE,RoelsJ,KowalczykMS,LiB,AshenbergO,TabakaM,DionneD,TickleTL,SlyperM,Rozenblatt-RosenO,VandekerckhoveB,LeclercqG,RegevA,VanVlierbergheP,GuilliamsM,TeichmannSA,SaeysY,TaghonT|IntegratedscRNA-SeqIdentifiesHumanPostnatalThymusSeedingProgenitorsandRegulatoryDynamicsofDifferentiatingImmatureThymocytes|Immunity|2020Jun16;52(6):1088-1104|e6|doi:10|1016/j|immuni|2020|03|019|Epub2020Apr17|PMID:32304633| +UBERON:0006936 thymus subcapsular epithelium thymus subcapsular epithelium CL:0009082 committed double negative thymocyte double negative thymocyte 3 HGNC:11639, HGNC:13222, HGNC:1662, HGNC:1674, HGNC:1685, HGNC:1695, HGNC:1695, HGNC:1699, HGNC:21290, HGNC:7154, HGNC:9832 DOI:10.1016/j.immuni.2020.03.019|DOI:10.3389/fimmu.2019.00447.|LavaertM,LiangKL,VandammeN,ParkJE,RoelsJ,KowalczykMS,LiB,AshenbergO,TabakaM,DionneD,TickleTL,SlyperM,Rozenblatt-RosenO,VandekerckhoveB,LeclercqG,RegevA,VanVlierbergheP,GuilliamsM,TeichmannSA,SaeysY,TaghonT|IntegratedscRNA-SeqIdentifiesHumanPostnatalThymusSeedingProgenitorsandRegulatoryDynamicsofDifferentiatingImmatureThymocytes|Immunity|2020Jun16;52(6):1088-1104|e6|doi:10|1016/j|immuni|2020|03|019|Epub2020Apr17|PMID:32304633| +UBERON:0006936 thymus subcapsular epithelium thymus subcapsular epithelium CL:0009083 rearranging double negative thymocyte double negative thymocyte 4 HGNC:11639, HGNC:13222, HGNC:1634, HGNC:1634, HGNC:1674, HGNC:1685, HGNC:1695, HGNC:1695, HGNC:1699, HGNC:21290, HGNC:2983, HGNC:7154, HGNC:9832 DOI:10.1016/j.immuni.2020.03.019|DOI:10.3389/fimmu.2019.00447.|LavaertM,LiangKL,VandammeN,ParkJE,RoelsJ,KowalczykMS,LiB,AshenbergO,TabakaM,DionneD,TickleTL,SlyperM,Rozenblatt-RosenO,VandekerckhoveB,LeclercqG,RegevA,VanVlierbergheP,GuilliamsM,TeichmannSA,SaeysY,TaghonT|IntegratedscRNA-SeqIdentifiesHumanPostnatalThymusSeedingProgenitorsandRegulatoryDynamicsofDifferentiatingImmatureThymocytes|Immunity|2020Jun16;52(6):1088-1104|e6|doi:10|1016/j|immuni|2020|03|019|Epub2020Apr17|PMID:32304633| +UBERON:0001021 nerve nerve CL:3000002 sympathetic noradrenergic neuron sympathetic noradrenergic nerve HGNC:11782 DOI:10.3892/ijmm.2014.1709 +UBERON:0003988 thymus corticomedullary boundary corticomedullary boundary of thymus CL:3000002 sympathetic noradrenergic neuron sympathetic noradrenergic nerve HGNC:11782 DOI:10.3892/ijmm.2014.1709 diff --git a/logs/ct_loc_markers/Ureter_report.tsv b/logs/ct_loc_markers/Ureter_report.tsv new file mode 100644 index 000000000..612232ec8 --- /dev/null +++ b/logs/ct_loc_markers/Ureter_report.tsv @@ -0,0 +1,11 @@ +Terminal AS/ID Terminal AS/label Terminal AS/user_label Terminal CT/ID Terminal CT/label Terminal CT/user_label Markers References +UBERON:0001253 lamina propria of ureter lamina propria of ureter CL:1000308 fibrocyte of adventitia of ureter fibroblast HGNC:21245, HGNC:2705, HGNC:29673 +UBERON:0001253 lamina propria of ureter lamina propria of ureter CL:1000308 fibrocyte of adventitia of ureter fibroblast HGNC:1346, HGNC:2705, HGNC:3011 +UBERON:0001253 lamina propria of ureter lamina propria of ureter CL:1000708 ureter adventitial cell myofibroblast HGNC:11373, HGNC:5318, HGNC:7035 +UBERON:0001253 lamina propria of ureter lamina propria of ureter CL:1000708 ureter adventitial cell fibroblast HGNC:11092, HGNC:20396, HGNC:613 +UBERON:0001253 lamina propria of ureter lamina propria of ureter CL:1000708 ureter adventitial cell endothelium HGNC:10718, HGNC:2047, HGNC:8823 +UBERON:0001253 lamina propria of ureter lamina propria of ureter CL:1000708 ureter adventitial cell smooth muscle HGNC:130, HGNC:281, HGNC:6934 +UBERON:0001253 lamina propria of ureter lamina propria of ureter CL:1000708 ureter adventitial cell smooth muscle HGNC:130, HGNC:1663, HGNC:895 +UBERON:0001254 urothelium of ureter urothelium of ureter CL:1001428 ureter urothelial cell urothelium HGNC:10492, HGNC:2891, HGNC:6442 +UBERON:0001254 urothelium of ureter urothelium of ureter CL:1001428 ureter urothelial cell urothelium HGNC:15979, HGNC:384, HGNC:6415 +UBERON:0001254 urothelium of ureter urothelium of ureter CL:1001428 ureter urothelial cell urothelium HGNC:12577, HGNC:12578, HGNC:12580 diff --git a/logs/ct_loc_markers/Urinary_bladder_report.tsv b/logs/ct_loc_markers/Urinary_bladder_report.tsv new file mode 100644 index 000000000..1137a4077 --- /dev/null +++ b/logs/ct_loc_markers/Urinary_bladder_report.tsv @@ -0,0 +1,12 @@ +Terminal AS/ID Terminal AS/label Terminal AS/user_label Terminal CT/ID Terminal CT/label Terminal CT/user_label Markers References +UBERON:0000381 urinary bladder detrusor smooth muscle urinary bladder detrusor smooth muscle CL:0002597 smooth muscle cell of bladder smooth muscle HGNC:145, HGNC:2770, HGNC:45169 +UBERON:0012239 urinary bladder vasculature urinary bladder vasculature CL:0002597 smooth muscle cell of bladder smooth muscle HGNC:281, HGNC:45169, HGNC:6934 +UBERON:0012239 urinary bladder vasculature urinary bladder vasculature CL:0002597 smooth muscle cell of bladder smooth muscle HGNC:1663, HGNC:45169, HGNC:895 +UBERON:0001261 lamina propria of urinary bladder lamina propria of urinary bladder CL:1001319 bladder cell myofibroblast HGNC:11373, HGNC:5318, HGNC:7035 +UBERON:0001261 lamina propria of urinary bladder lamina propria of urinary bladder CL:1001319 bladder cell fibroblast HGNC:21245, HGNC:2705, HGNC:29673 +UBERON:0001261 lamina propria of urinary bladder lamina propria of urinary bladder CL:1001319 bladder cell fibroblast HGNC:1346, HGNC:2705, HGNC:3011 +UBERON:0001261 lamina propria of urinary bladder lamina propria of urinary bladder CL:1001319 bladder cell fibroblast HGNC:11092, HGNC:20396, HGNC:613 +UBERON:0004645 urinary bladder urothelium urinary bladder urothelium CL:1001428 bladder urothelial cell urothelium HGNC:10492, HGNC:2891, HGNC:6442 +UBERON:0004645 urinary bladder urothelium urinary bladder urothelium CL:1001428 bladder urothelial cell urothelium HGNC:15979, HGNC:384, HGNC:6415 +UBERON:0004645 urinary bladder urothelium urinary bladder urothelium CL:1001428 bladder urothelial cell urothelium HGNC:12578, HGNC:12580, HGNC:40603 +UBERON:0012239 urinary bladder vasculature urinary bladder vasculature CL:2000040 bladder microvascular endothelial cell endothelium HGNC:10718, HGNC:2047, HGNC:8823 diff --git a/logs/ct_loc_markers/cell-loc-diff-markers.tsv b/logs/ct_loc_markers/cell-loc-diff-markers.tsv new file mode 100644 index 000000000..6deae90ad --- /dev/null +++ b/logs/ct_loc_markers/cell-loc-diff-markers.tsv @@ -0,0 +1,516 @@ +Terminal AS/ID Terminal AS/label Terminal AS/user_label Terminal CT/ID Terminal CT/label Terminal CT/user_label Markers References Table +UBERON:0000006 islet of Langerhans Islet of Langerhans CL:0000235 macrophage Macrophage HGNC:1631, HGNC:1693, HGNC:352, HGNC:7228 Pancreas +UBERON:0000006 islet of Langerhans Islet of Langerhans CL:0000235 macrophage Macrophage HGNC:1693, HGNC:352 Pancreas +UBERON:0000178 Blood Blood CL:0000897 CD4-positive, alpha-beta memory T cell CD4 T cell memory HGNC:11362, HGNC:11892, HGNC:12029, HGNC:12729, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:19129, HGNC:19383, HGNC:6001, HGNC:6015, HGNC:6817, HGNC:7849, HGNC:8109, HGNC:9666, HGNC:9721 multi_loc +UBERON:0000178 Blood Blood CL:0000897 CD4-positive, alpha-beta memory T cell CD4 T cell memory HGNC:12029, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:2360, HGNC:26974, HGNC:4054, HGNC:537, HGNC:6563, HGNC:9666 multi_loc +UBERON:0000178 Blood Blood CL:0000897 CD4-positive, alpha-beta memory T cell CD4 T cell memory HGNC:1608, HGNC:16647, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:2360, HGNC:26974, HGNC:4709, HGNC:6134, HGNC:9360, HGNC:9666 multi_loc +UBERON:0000178 Blood Blood CL:0002399 CD1c-positive myeloid dendritic cell dendritic cell type 3 (DC3) HGNC:10498, HGNC:10499, HGNC:11784, HGNC:1628, HGNC:1631, HGNC:1633, HGNC:1636, HGNC:1636, HGNC:1663, HGNC:1674, HGNC:16916, HGNC:3609, HGNC:3619, HGNC:4947, HGNC:6012, HGNC:6152, HGNC:7656 DOI:10.1002/cyto.a.23724 multi_loc +UBERON:0000178 Blood Blood CL:0002399 CD1c-positive myeloid dendritic cell dendritic cell type 2 (DC2) HGNC:11784, HGNC:1628, HGNC:1633, HGNC:1636, HGNC:1636, HGNC:1674, HGNC:16916, HGNC:3609, HGNC:3618, HGNC:3619, HGNC:4940, HGNC:4943, HGNC:4947, HGNC:6012, HGNC:6152, HGNC:7656 DOI:10.1016/j.immuni.2017.04.019 multi_loc +UBERON:0000397 colonic epithelium lymphcyte CL:0000793 CD4-positive, alpha-beta intraepithelial T cell surface intraepithelial CD4+ lymphocyte HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1678, HGNC:1678, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695, HGNC:1695 DOI:10.1093/intimm/7.9.1473|PMID:7495755 Large_intestine +UBERON:0000397 colonic epithelium epithelium CL:0000793 CD4-positive, alpha-beta intraepithelial T cell surface intraepithelial CD4+ lymphocyte HGNC:1639, HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1678, HGNC:1678, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695 DOI:10.1093/intimm/7.9.1473|PMID:7495755 multi_loc +UBERON:0000397 colonic epithelium lymphocyte CL:0000935 CD4-negative, CD8-negative, alpha-beta intraepithelial T cell surface intraepithelial CD4-CD8- lymphocyte alpha/beta HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695, HGNC:1695 DOI:10.1093/intimm/7.9.1473|PMID:7495755 multi_loc +UBERON:0000397 colonic epithelium epithelium CL:0000935 CD4-negative, CD8-negative, alpha-beta intraepithelial T cell surface intraepithelial CD4-CD8- lymphocyte alpha/beta HGNC:1639, HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:921 DOI:10.1093/intimm/7.9.1473|PMID:7495755 multi_loc +UBERON:0000397 colonic epithelium lymphocyte CL:0000935 CD4-negative, CD8-negative, alpha-beta intraepithelial T cell surface intraepithelial CD4-CD8- lymphocyte alpha/beta HGNC:1639, HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695 DOI:10.1093/intimm/7.9.1473|PMID:7495755 multi_loc +UBERON:0000423 eccrine sweat gland Eccrine (sweat) glands CL:1000417 myoepithelial cell of sweat gland myoepithelial cell HGNC:10492, HGNC:30840, HGNC:6436 DOI:10.1111/exd.12773|DOI:10.1111/1523-1747.ep12277180|DOI:10.1046/j.1365-2133.1997.17651853.x|PMID:26014472|PMID:2414369|PMID:9274623 Skin +UBERON:0000423 eccrine sweat gland eccrine sweat gland CL:1000417 myoepithelial cell of sweat gland myoepithelial HGNC:130, HGNC:130 NoDOI Large_intestine +UBERON:0000955 brain brain CL:0000057 fibroblast fibroblast HGNC:11040 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000057 fibroblast fibroblast HGNC:30988, HGNC:9591 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000057 fibroblast fibroblast HGNC:3770, HGNC:38, HGNC:53007 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000057 fibroblast fibroblast HGNC:1077, HGNC:11005, HGNC:19090 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000057 fibroblast fibroblast HGNC:11595, HGNC:6715 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000057 fibroblast fibroblast HGNC:1346, HGNC:2198, HGNC:3601 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000057 fibroblast fibroblast HGNC:2192, HGNC:30927 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000057 fibroblast fibroblast HGNC:1072, HGNC:1346 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000065 ependymal cell ependymal cell HGNC:12261, HGNC:27287, HGNC:8239 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000065 ependymal cell ependymal cell HGNC:1487, HGNC:2360, HGNC:8239 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000065 ependymal cell ependymal cell HGNC:1487 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000065 ependymal cell ependymal cell HGNC:8239 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000065 ependymal cell ependymal cell HGNC:12405, HGNC:37261 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000065 ependymal cell ependymal cell HGNC:28395, HGNC:37261 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000065 ependymal cell ependymal cell HGNC:3690, HGNC:37261, HGNC:5318 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000127 astrocyte astrocyte HGNC:3180, HGNC:43436, HGNC:5318, HGNC:613 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000127 astrocyte astrocyte HGNC:42700, HGNC:4453, HGNC:5318 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000127 astrocyte astrocyte HGNC:44915, HGNC:5318, HGNC:613 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000127 astrocyte astrocyte HGNC:4235, HGNC:633 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000127 astrocyte astrocyte HGNC:2389, HGNC:4235 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000127 astrocyte astrocyte HGNC:18374, HGNC:19719, HGNC:27363, HGNC:42700 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000128 oligodendrocyte oligodendrocyte HGNC:20707, HGNC:51662, HGNC:9086 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000128 oligodendrocyte oligodendrocyte HGNC:10044, HGNC:20675, HGNC:51662 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000128 oligodendrocyte oligodendrocyte HGNC:20707, HGNC:3432, HGNC:9086 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000128 oligodendrocyte oligodendrocyte HGNC:11740, HGNC:14082, HGNC:23091, HGNC:29268, HGNC:7189 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000128 oligodendrocyte oligodendrocyte HGNC:20707, HGNC:23091, HGNC:23723, HGNC:7189 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000128 oligodendrocyte oligodendrocyte HGNC:11740, HGNC:23091, HGNC:2389, HGNC:29268 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:2558, HGNC:28416, HGNC:50913 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:2558, HGNC:54229, HGNC:8133 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:2558, HGNC:352, HGNC:54229 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:18124, HGNC:19191, HGNC:50913 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:18124, HGNC:54124, HGNC:54229 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:3531, HGNC:7228 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:21695, HGNC:38712, HGNC:6152 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:54284, HGNC:9361 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:12405, HGNC:17379 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:21591, HGNC:26744, HGNC:8138 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:14217, HGNC:25396 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:4855 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:7872, HGNC:7955 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:19179, HGNC:30620, HGNC:983 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:13010, HGNC:16421, HGNC:9459 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:14005, HGNC:21735, HGNC:227, HGNC:26086 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:16189, HGNC:43906 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:8079, HGNC:8651 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:54290 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:11329, HGNC:26683, HGNC:54353 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:11050, HGNC:20692 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:10726, HGNC:4172, HGNC:6654 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:10889, HGNC:25552, HGNC:6132 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:10854, HGNC:11641, HGNC:30620, HGNC:6594 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:12695, HGNC:16709, HGNC:23571 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:11641, HGNC:19087, HGNC:2663, HGNC:6352 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:11641, HGNC:19087, HGNC:3126, HGNC:37462 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:11641, HGNC:6593 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:11329, HGNC:11641, HGNC:20866 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:19090, HGNC:6653, HGNC:9005 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:19090, HGNC:8619 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:19090, HGNC:3126, HGNC:8518 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:1442, HGNC:2171, HGNC:4392, HGNC:5295, HGNC:7001, HGNC:777 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:13733, HGNC:6653, HGNC:9005 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:13285, HGNC:2663, HGNC:4172 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:12872, HGNC:21694, HGNC:37462, HGNC:8010 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:6132, HGNC:8138 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:5114, HGNC:6654 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:21386, HGNC:22950, HGNC:23206, HGNC:9674 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:14005, HGNC:4392 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:777 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:11743, HGNC:6653 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:30748, HGNC:4172, HGNC:50698, HGNC:51231 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:4172, HGNC:50687 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:10889, HGNC:11517, HGNC:4172 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:14222, HGNC:52588, HGNC:8138 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0002453 oligodendrocyte precursor cell oligodendrocyte precursor cell HGNC:51662 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0002453 oligodendrocyte precursor cell oligodendrocyte precursor cell HGNC:26287 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0002453 oligodendrocyte precursor cell oligodendrocyte precursor cell HGNC:16983, HGNC:612 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0002453 oligodendrocyte precursor cell oligodendrocyte precursor cell HGNC:16983 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:1001474 medium spiny neuron medium spiny neuron HGNC:4086, HGNC:6132 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:19718, HGNC:219, HGNC:3520, HGNC:5184 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:10640, HGNC:19718, HGNC:3520, HGNC:9679 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:1954, HGNC:19718, HGNC:29 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:16018, HGNC:38408, HGNC:8656 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:1001474 medium spiny neuron medium spiny neuron HGNC:3023, HGNC:3520, HGNC:8831 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:1001474 medium spiny neuron medium spiny neuron HGNC:10640, HGNC:13875, HGNC:6132 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023059 differentiation-committed oligodendrocyte precursor committed oligodendrocyte precursor cell HGNC:14344, HGNC:3791 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023059 differentiation-committed oligodendrocyte precursor committed oligodendrocyte precursor cell HGNC:974 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023059 differentiation-committed oligodendrocyte precursor committed oligodendrocyte precursor cell HGNC:23091, HGNC:7189 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023059 differentiation-committed oligodendrocyte precursor committed oligodendrocyte precursor cell HGNC:4471, HGNC:9142, HGNC:974 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023059 differentiation-committed oligodendrocyte precursor committed oligodendrocyte precursor cell HGNC:11740 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023059 differentiation-committed oligodendrocyte precursor committed oligodendrocyte precursor cell HGNC:20707 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023064 caudal ganglionic eminence derived interneuron CGE interneuron HGNC:17178, HGNC:3522, HGNC:7569 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023064 caudal ganglionic eminence derived interneuron CGE interneuron HGNC:12693, HGNC:17265 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023068 thalamic excitatory neuron thalamic excitatory neuron HGNC:11641, HGNC:18404, HGNC:25552, HGNC:9609 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023068 thalamic excitatory neuron thalamic excitatory neuron HGNC:24323, HGNC:9163, HGNC:9997 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:5993, HGNC:9361 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:13635 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:17995, HGNC:3498 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:130, HGNC:3498 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:30400, HGNC:4871 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:19194, HGNC:3498, HGNC:74 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:11045, HGNC:11046, HGNC:14872 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:11553, HGNC:130 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:10937, HGNC:42872 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:3498, HGNC:7060 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:26213, HGNC:29836 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023073 choroid plexus cell choroid plexus cell HGNC:14344, HGNC:5147 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023073 choroid plexus cell choroid plexus cell HGNC:12405, HGNC:4462 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023073 choroid plexus cell choroid plexus cell HGNC:18695, HGNC:43906, HGNC:9086 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023073 choroid plexus cell choroid plexus cell HGNC:3791, HGNC:8824 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:15576, HGNC:43906, HGNC:52895 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:14866, HGNC:43906, HGNC:9477, HGNC:9957 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:22128, HGNC:31110, HGNC:7941 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:20754, HGNC:23631, HGNC:44222, HGNC:6714 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:1077, HGNC:19194, HGNC:43906 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:10259, HGNC:1077, HGNC:43906 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:23631, HGNC:7941 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:10725, HGNC:43906, HGNC:52895, HGNC:9477 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:10725, HGNC:11510, HGNC:30506, HGNC:43906, HGNC:53587 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:15576, HGNC:30506, HGNC:37078 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:0000402 CNS interneuron CNS interneuron HGNC:19898, HGNC:2731, HGNC:7029 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:0000402 CNS interneuron CNS interneuron HGNC:11517, HGNC:22950, HGNC:42435, HGNC:676, HGNC:7872 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:40401 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:27823, HGNC:52626, HGNC:53175 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:18638, HGNC:6136 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:10727, HGNC:14632, HGNC:52626 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:20391, HGNC:48724 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:3179 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:4680 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:0002605 astrocyte of the cerebral cortex astrocyte of the cerebral cortex HGNC:3690, HGNC:43436, HGNC:5362 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:0002605 astrocyte of the cerebral cortex astrocyte of the cerebral cortex HGNC:14864, HGNC:52515 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:0010012 cerebral cortex neuron cerebral cortex neuron HGNC:26563 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:0010012 cerebral cortex neuron cerebral cortex neuron HGNC:1183, HGNC:12338, HGNC:13010 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:0010012 cerebral cortex neuron cerebral cortex neuron HGNC:2705, HGNC:48603 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:0010012 cerebral cortex neuron cerebral cortex neuron HGNC:13542, HGNC:3446, HGNC:8569 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:0010012 cerebral cortex neuron cerebral cortex neuron HGNC:54272 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:0010012 cerebral cortex neuron cerebral cortex neuron HGNC:10259, HGNC:1686, HGNC:3488 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:0010012 cerebral cortex neuron cerebral cortex neuron HGNC:53175, HGNC:53225 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:10259, HGNC:27405 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:12695 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:10725, HGNC:12338, HGNC:4325, HGNC:50645 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:21569 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:16953, HGNC:18374, HGNC:21569 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:53062 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:21569, HGNC:29109, HGNC:42500 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:16097, HGNC:19739, HGNC:42024 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:53175 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:41926, HGNC:53212 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:22989 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:28543, HGNC:50538, HGNC:53225 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:43559, HGNC:53225 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:2210, HGNC:52895, HGNC:6482 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:2210, HGNC:53212 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:30620, HGNC:53175, HGNC:53225 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:23392 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:10259, HGNC:12335, HGNC:17109, HGNC:21694 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:53225 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:30620, HGNC:43558, HGNC:51166 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:4023009 extratelencephalic-projecting glutamatergic cortical neuron extratelencephalic-projecting glutamatergic cortical neuron HGNC:48639, HGNC:53354 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:4023009 extratelencephalic-projecting glutamatergic cortical neuron extratelencephalic-projecting glutamatergic cortical neuron HGNC:41926 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:4023012 near-projecting glutamatergic cortical neuron near-projecting glutamatergic cortical neuron HGNC:22128 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:4023012 near-projecting glutamatergic cortical neuron near-projecting glutamatergic cortical neuron HGNC:43910 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:4023012 near-projecting glutamatergic cortical neuron near-projecting glutamatergic cortical neuron HGNC:3969 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:4023012 near-projecting glutamatergic cortical neuron near-projecting glutamatergic cortical neuron HGNC:10256, HGNC:43910, HGNC:8076 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:4023012 near-projecting glutamatergic cortical neuron near-projecting glutamatergic cortical neuron HGNC:13433, HGNC:24665 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:4023012 near-projecting glutamatergic cortical neuron near-projecting glutamatergic cortical neuron HGNC:1663, HGNC:23631, HGNC:43910 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023012 near-projecting glutamatergic cortical neuron near-projecting glutamatergic cortical neuron HGNC:277, HGNC:43910, HGNC:9229, HGNC:9682 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:4023039 amygdala excitatory neuron amygdala excitatory neuron HGNC:2358, HGNC:52895 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:4023039 amygdala excitatory neuron amygdala excitatory neuron HGNC:53147 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:4023063 medial ganglionic eminence derived interneuron MGE derived interneuron HGNC:17109, HGNC:29213, HGNC:9704 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023063 medial ganglionic eminence derived interneuron MGE derived interneuron HGNC:1073, HGNC:16421, HGNC:24165 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023063 medial ganglionic eminence derived interneuron MGE derived interneuron HGNC:13361 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023063 medial ganglionic eminence derived interneuron MGE derived interneuron HGNC:20391, HGNC:9704 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023063 medial ganglionic eminence derived interneuron MGE derived interneuron HGNC:11329, HGNC:13841, HGNC:9957 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023063 medial ganglionic eminence derived interneuron MGE derived interneuron HGNC:19266, HGNC:21591, HGNC:3604 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023063 medial ganglionic eminence derived interneuron MGE derived interneuron HGNC:18374, HGNC:26270 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023063 medial ganglionic eminence derived interneuron MGE derived interneuron HGNC:17109, HGNC:18351, HGNC:7549 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023063 medial ganglionic eminence derived interneuron MGE derived interneuron HGNC:20391, HGNC:26270, HGNC:42435 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023063 medial ganglionic eminence derived interneuron MGE derived interneuron HGNC:11521, HGNC:3179 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023063 medial ganglionic eminence derived interneuron MGE derived interneuron HGNC:17178, HGNC:3604, HGNC:7894 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023063 medial ganglionic eminence derived interneuron MGE derived interneuron HGNC:11517, HGNC:2705 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023063 medial ganglionic eminence derived interneuron MGE derived interneuron HGNC:14632, HGNC:16421, HGNC:26076, HGNC:3604, HGNC:7154 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023063 medial ganglionic eminence derived interneuron MGE derived interneuron HGNC:13841, HGNC:42435, HGNC:9454 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023063 medial ganglionic eminence derived interneuron MGE derived interneuron HGNC:1434, HGNC:3522, HGNC:8831 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023064 caudal ganglionic eminence derived interneuron CGE interneuron HGNC:14940, HGNC:2355, HGNC:7945 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023064 caudal ganglionic eminence derived interneuron CGE interneuron HGNC:12693, HGNC:1951, HGNC:3763 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023064 caudal ganglionic eminence derived interneuron CGE interneuron HGNC:15478 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023064 caudal ganglionic eminence derived interneuron CGE interneuron HGNC:10640, HGNC:10725, HGNC:19266, HGNC:41081 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000988 pons pons CL:0000540 neuron neuron HGNC:11051, HGNC:52588, HGNC:7000 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000988 pons pons CL:0000540 neuron neuron HGNC:19087, HGNC:19090, HGNC:49024 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000988 pons pons CL:0000540 neuron neuron HGNC:14222, HGNC:27405, HGNC:52588 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000988 pons pons CL:0000540 neuron neuron HGNC:4525, HGNC:52588, HGNC:6481 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000988 pons pons CL:0000540 neuron neuron HGNC:11051, HGNC:19090, HGNC:8518 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001250 red pulp of spleen Red Pulp CL:2000053 splenic endothelial cell Splenic endothelial cell HGNC:11784, HGNC:12726, HGNC:1662, HGNC:1662, HGNC:1706, HGNC:8823, HGNC:8823 DOI:10.1007/s00418-007-0320-8|DOI:10.1016/j.aanat.2019.05.004|DOI10.1182/bloodadvances.2017015073 Spleen +UBERON:0001250 red pulp of spleen Red Pulp CL:2000053 splenic endothelial cell Splenic endothelial cell HGNC:12663, HGNC:12726, HGNC:12726, HGNC:1662, HGNC:1662, HGNC:8823, HGNC:8823 DOI:10.1017/CBO9780511545979|DOI10.1182/bloodadvances.2017015073 Spleen +UBERON:0001250 red pulp of spleen Red Pulp CL:2000053 splenic endothelial cell Splenic endothelial cell HGNC:11784, HGNC:12726, HGNC:1662, HGNC:1662, HGNC:8823 DOI:10.1007/s00418-007-0320-8|DOI10.1182/bloodadvances.2017015073 Spleen +UBERON:0001253 lamina propria of ureter lamina propria of ureter CL:1000308 fibrocyte of adventitia of ureter fibroblast HGNC:1346, HGNC:2705, HGNC:3011 multi_loc +UBERON:0001253 lamina propria of ureter lamina propria of ureter CL:1000308 fibrocyte of adventitia of ureter fibroblast HGNC:21245, HGNC:2705, HGNC:29673 multi_loc +UBERON:0001253 lamina propria of ureter lamina propria of ureter CL:1000708 ureter adventitial cell smooth muscle HGNC:130, HGNC:1663, HGNC:895 Ureter +UBERON:0001253 lamina propria of ureter lamina propria of ureter CL:1000708 ureter adventitial cell smooth muscle HGNC:130, HGNC:281, HGNC:6934 Ureter +UBERON:0001253 lamina propria of ureter lamina propria of ureter CL:1000708 ureter adventitial cell endothelium HGNC:10718, HGNC:2047, HGNC:8823 Ureter +UBERON:0001253 lamina propria of ureter lamina propria of ureter CL:1000708 ureter adventitial cell fibroblast HGNC:11092, HGNC:20396, HGNC:613 Ureter +UBERON:0001253 lamina propria of ureter lamina propria of ureter CL:1000708 ureter adventitial cell myofibroblast HGNC:11373, HGNC:5318, HGNC:7035 Ureter +UBERON:0001254 urothelium of ureter urothelium of ureter CL:1001428 ureter urothelial cell urothelium HGNC:10492, HGNC:2891, HGNC:6442 multi_loc +UBERON:0001254 urothelium of ureter urothelium of ureter CL:1001428 ureter urothelial cell urothelium HGNC:12577, HGNC:12578, HGNC:12580 multi_loc +UBERON:0001254 urothelium of ureter urothelium of ureter CL:1001428 ureter urothelial cell urothelium HGNC:15979, HGNC:384, HGNC:6415 multi_loc +UBERON:0001261 lamina propria of urinary bladder lamina propria of urinary bladder CL:1001319 bladder cell myofibroblast HGNC:11373, HGNC:5318, HGNC:7035 multi_loc +UBERON:0001261 lamina propria of urinary bladder lamina propria of urinary bladder CL:1001319 bladder cell fibroblast HGNC:21245, HGNC:2705, HGNC:29673 multi_loc +UBERON:0001261 lamina propria of urinary bladder lamina propria of urinary bladder CL:1001319 bladder cell fibroblast HGNC:1346, HGNC:2705, HGNC:3011 multi_loc +UBERON:0001261 lamina propria of urinary bladder lamina propria of urinary bladder CL:1001319 bladder cell fibroblast HGNC:11092, HGNC:20396, HGNC:613 multi_loc +UBERON:0001282 intralobular bile duct Canals of Hering CL:0002196 Hepatic oval stem cell hepatic oval cell HGNC:11801, HGNC:6342 |DOI:10.1136/gut.2007.143321|DOI:10.1053/gast.2001.21175 multi_loc +UBERON:0001282 intralobular bile duct Canals of Hering CL:0002196 Hepatic oval stem cell hepatic progenitor cell HGNC:11204, HGNC:11529, HGNC:4504, HGNC:8148, HGNC:9454 DOI:10.1038/nature11826|DOI:10.1634/stemcells.2007-0176|DOI:10.1038/ng.722|DOI:10.1053/j.gastro.2012.08.024 multi_loc +UBERON:0001289 descending limb of loop of Henle Loop of Henle (Thin Limb) CL:4030013 kidney loop of Henle long descending thin limb outer medulla epithelial cell Descending Thin Limb Cell Type 2 HGNC:11073, HGNC:11530, HGNC:20862, HGNC:2389, HGNC:633, HGNC:633 Kidney +UBERON:0001289 descending limb of loop of Henle Loop of Henle (Thin Limb) CL:4030013 kidney loop of Henle long descending thin limb outer medulla epithelial cell Descending Thin Limb Cell Type 2 HGNC:11073, HGNC:11530, HGNC:16438, HGNC:20862, HGNC:2389, HGNC:633, HGNC:633 DOI:10.1101/2021.07.28.454201|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1038/s41467-019-10861-2|DOI:10.1681/ASN.2020010071|DOI:10.1152/ajprenal.2000.278.1.F52|PMID:31689386 Kidney +UBERON:0001291 thick ascending limb of loop of Henle Loop of Henle (Thick Limb/Medulla) CL:1001108 kidney loop of Henle medullary thick ascending limb epithelial cell Medullary Thick Ascending Limb Cell HGNC:10910, HGNC:12559, HGNC:1514 multi_loc +UBERON:0001291 thick ascending limb of loop of Henle Loop of Henle (Thick Limb/Medulla) CL:1001108 kidney loop of Henle medullary thick ascending limb epithelial cell Medullary Thick Ascending Limb Cell HGNC:10910, HGNC:12559, HGNC:12559, HGNC:1514, HGNC:1748, HGNC:1748, HGNC:799, HGNC:799, HGNC:9459, HGNC:9858 DOI:10.1038/s41467-019-10861-2|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|DOI:10.1681/ASN.2020010071|PMID:31249312|PMCID:PMC6597610|PMID:31689386 Kidney +UBERON:0001473 lymphatic vessel Lymphatic Vessels CL:0002138 endothelial cell of lymphatic vessel Endothelial Cell of Lymphatic Vessel HGNC:11924, HGNC:14687, HGNC:1527, HGNC:1527, HGNC:1611, HGNC:1611, HGNC:29602, HGNC:6895, HGNC:7035, HGNC:8021, HGNC:8021, HGNC:8051, HGNC:8514, HGNC:8823, HGNC:9459, HGNC:9666 DOI:10.3389/fcvm.2020.00052|DOI:10.1016/j.immuni.2019.06.027|XiangM,GrossoRA,TakedaA,PanJ,BekkhusT,BruloisK,DermadiD,NordlingS,VanlandewijckM,JalkanenS,UlvmarMH,ButcherEC|ASingle-CellTranscriptionalRoadmapoftheMouseandHumanLymphNodeLymphaticVasculature|FrontCardiovascMed|2020Apr30;7:52|doi:10|3389/fcvm|2020|00052|PMID:32426372;PMCID:PMC7204639||TakedaA,HollménM,DermadiD,PanJ,BruloisKF,KaukonenR,LönnbergT,BoströmP,KoskivuoI,IrjalaH,MiyasakaM,SalmiM,ButcherEC,JalkanenS|Single-CellSurveyofHumanLymphaticsUnveilsMarkedEndothelialCellHeterogeneityandMechanismsofHomingforNeutrophils|Immunity|2019Sep17;513:561-572|e5|doi:10|1016/j|immuni|2019|06|027|Epub2019Aug8|PMID:31402260| multi_loc +UBERON:0001473 lymphatic vessel Lymphatic Vessels CL:0002138 endothelial cell of lymphatic vessel Lymphatic Endothelium Cell HGNC:12726, HGNC:14687, HGNC:29602, HGNC:29602, HGNC:8823, HGNC:9459 DOI:10.1369/jhc.4A6514.2005|NoDOI|GarrafaE,TraininiL,BenettiA,SabaE,FezzardiL,LorussoB,BorghettiP,BottioT,CeriE,PortolaniN,BonardlliS,GiuliniSM,AnnibaleG,CorradiA,ImbertiL,CarusoA|Isolation,purification,andheterogeneityofhumanlymphaticendothelialcellsfromdifferenttissues|Lymphology|2005Dec;38(4):159-66|PMID:16515224| multi_loc +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:19087, HGNC:4172, HGNC:49642, HGNC:6593 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:21357, HGNC:8138 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:11049 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:11517, HGNC:11641, HGNC:9446 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:17245, HGNC:23631, HGNC:30988 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:19087, HGNC:19090, HGNC:4504, HGNC:6551 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:15581, HGNC:20779 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:11743, HGNC:3341, HGNC:6551 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:11743, HGNC:21587, HGNC:4172, HGNC:4579, HGNC:777 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:11743, HGNC:43906, HGNC:6551 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:20779, HGNC:6551, HGNC:8522 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:11743, HGNC:14222 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001896 medulla oblongata medulla oblongata CL:0000540 neuron neuron HGNC:3969, HGNC:5137 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001896 medulla oblongata medulla oblongata CL:0000540 neuron neuron HGNC:19090, HGNC:26002, HGNC:5114 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001896 medulla oblongata medulla oblongata CL:0000540 neuron neuron HGNC:11743, HGNC:25552, HGNC:7001 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001896 medulla oblongata medulla oblongata CL:0000540 neuron neuron HGNC:11528, HGNC:5114, HGNC:7981 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001896 medulla oblongata medulla oblongata CL:0000540 neuron neuron HGNC:20660, HGNC:5137 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001896 medulla oblongata medulla oblongata CL:0000540 neuron neuron HGNC:19087, HGNC:5114, HGNC:8616 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001896 medulla oblongata medulla oblongata CL:0000540 neuron neuron HGNC:10527, HGNC:5137 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001896 medulla oblongata medulla oblongata CL:0000540 neuron neuron HGNC:11051, HGNC:12405, HGNC:14632, HGNC:5295 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001896 medulla oblongata medulla oblongata CL:0000540 neuron neuron HGNC:6136, HGNC:6654 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:0000540 neuron neuron HGNC:10259, HGNC:16973, HGNC:8778 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:0000540 neuron neuron HGNC:11602, HGNC:8910 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:0000540 neuron neuron HGNC:1751, HGNC:18695, HGNC:30620 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:0000540 neuron neuron HGNC:644, HGNC:6653 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:0000540 neuron neuron HGNC:22788 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:0000540 neuron neuron HGNC:2907, HGNC:6132, HGNC:8518 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:0000540 neuron neuron HGNC:10882, HGNC:8518 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:0000540 neuron neuron HGNC:10882, HGNC:9005 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:0000540 neuron neuron HGNC:6132, HGNC:6551 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:10882, HGNC:13604, HGNC:53062, HGNC:9446 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:10882, HGNC:28572, HGNC:7596, HGNC:8139 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:10725, HGNC:9005 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:23319, HGNC:9005 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:10882, HGNC:1663, HGNC:6714 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:11517 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:11517, HGNC:39988, HGNC:42742 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:3969, HGNC:42742 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:21591, HGNC:42742 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:28554, HGNC:42742 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:10882, HGNC:2356, HGNC:9005 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0000815 regulatory T cell T Regulatory Cell HGNC:1608, HGNC:1674, HGNC:1678, HGNC:6008, HGNC:6008, HGNC:6024, HGNC:6106, HGNC:6106, HGNC:9666 DOI:10.1016/j.immuni.2012.09.020|DOI:10.1007/s00262-015-1729-x|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0000815 regulatory T cell T Regulatory Cell HGNC:1608, HGNC:6008, HGNC:6106 DOI:10.1016/j.immuni.2012.09.020|DOI:10.1007/s00262-015-1729-x|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0001961 mucosa-associated lymphoid tissue dermal skin-associated lymphoid tissue CL:0000235 macrophage macrophage HGNC:1631, HGNC:1631, HGNC:1693, HGNC:1693, HGNC:1697, HGNC:1697, HGNC:6149, HGNC:6149, HGNC:7228, HGNC:7228 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 Large_intestine +UBERON:0001961 mucosa-associated lymphoid tissue subcutaneous skin-associated lymphoid tissue CL:0000235 macrophage macrophage HGNC:1673, HGNC:1673, HGNC:1678, HGNC:1678 NoDOI Large_intestine +UBERON:0001961 mucosa-associated lymphoid tissue subcutaneous skin-associated lymphoid tissue CL:0000236 B cell B cell HGNC:4502, HGNC:4502, HGNC:6149, HGNC:6149 NoDOI Large_intestine +UBERON:0001961 mucosa-associated lymphoid tissue dermal skin-associated lymphoid tissue CL:0000236 B cell B cell HGNC:1633, HGNC:1633, HGNC:1698, HGNC:1698 NoDOI Large_intestine +UBERON:0001961 mucosa-associated lymphoid tissue dermal skin-associated lymphoid tissue CL:0000545 T-helper 1 cell T helper HGNC:1673, HGNC:1673, HGNC:1678, HGNC:1678 NoDOI multi_loc +UBERON:0001961 mucosa-associated lymphoid tissue subcutaneous skin-associated lymphoid tissue CL:0000545 T-helper 1 cell T helper HGNC:1673, HGNC:1673, HGNC:1706, HGNC:1706 NoDOI Large_intestine +UBERON:0001961 mucosa-associated lymphoid tissue subcutaneous skin-associated lymphoid tissue CL:0000815 regulatory T cell T reg HGNC:1633, HGNC:1633, HGNC:1698, HGNC:1698 NoDOI Large_intestine +UBERON:0001961 mucosa-associated lymphoid tissue dermal skin-associated lymphoid tissue CL:0000815 regulatory T cell T reg HGNC:1673, HGNC:1673, HGNC:1678, HGNC:1678, HGNC:6106, HGNC:6106 NoDOI Large_intestine +UBERON:0001961 mucosa-associated lymphoid tissue dermal skin-associated lymphoid tissue CL:0000910 cytotoxic T cell T killer HGNC:1673, HGNC:1673, HGNC:1706, HGNC:1706 NoDOI multi_loc +UBERON:0001961 mucosa-associated lymphoid tissue subcutaneous skin-associated lymphoid tissue CL:0000910 cytotoxic T cell T killer HGNC:1673, HGNC:1673, HGNC:1678, HGNC:1678, HGNC:6106, HGNC:6106 NoDOI multi_loc +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/Isolated lymphoid follicles (ILF) CL:0009018 macrophage CD8+ T cell HGNC:1639, HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695, HGNC:1706, HGNC:1706 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 Large_intestine +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/Isolated lymphoid follicles (ILF) CL:0009018 lymphocyte of large intestine lamina propria NK cell HGNC:1695, HGNC:18788, HGNC:18788, HGNC:6152, HGNC:6152, HGNC:7656, HGNC:7656, HGNC:921 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 multi_loc +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/Isolated lymphoid follicles (ILF) CL:0009018 lymphocyte of large intestine lamina propria regulatory CD4+ T cell HGNC:1678, HGNC:1678, HGNC:6008, HGNC:6008, HGNC:6106, HGNC:6106 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 multi_loc +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/Isolated lymphoid follicles (ILF) CL:0009018 lymphocyte of large intestine lamina propria B cell HGNC:1633, HGNC:1633, HGNC:1698, HGNC:1698, HGNC:2336, HGNC:2336, HGNC:7315, HGNC:7315 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 Large_intestine +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/Isolated lymphoid follicles (ILF) CL:0009018 lymphocyte of large intestine lamina propria CD4+ T cell HGNC:1639, HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1678, HGNC:1678, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 multi_loc +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/lamina propria CL:0009018 lymphocyte of large intestine lamina propria innate lymphoid cell HGNC:6024, HGNC:6024, HGNC:6342, HGNC:6342, HGNC:6373, HGNC:6373 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 multi_loc +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/Isolated lymphoid follicles (ILF) CL:0009018 lymphocyte of large intestine lamina propria CD4+ T cell HGNC:1639, HGNC:1639, HGNC:1676, HGNC:1676, HGNC:1678, HGNC:1678, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 multi_loc +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/lamina propria CL:0009018 lymphocyte of large intestine lamina propria NK cell HGNC:18788, HGNC:18788, HGNC:6152, HGNC:6152, HGNC:7656, HGNC:7656, HGNC:921, HGNC:921 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 multi_loc +UBERON:0002037 cerebellum cerebellum CL:4023057 cerebellar inhibitory GABAergic interneuron cerebellar inhibitory HGNC:28751 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002037 cerebellum cerebellum CL:4023057 cerebellar inhibitory GABAergic interneuron cerebellar inhibitory HGNC:16941 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002037 cerebellum cerebellum CL:4023057 cerebellar inhibitory GABAergic interneuron cerebellar inhibitory HGNC:16941, HGNC:33609, HGNC:9674 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002371 Bone marrow Bone marrow CL:0000764 erythroid lineage cell early erythroid HGNC:11529, HGNC:11763, HGNC:1663, HGNC:1663, HGNC:31397, HGNC:3349, HGNC:4170, HGNC:4702, HGNC:607, HGNC:6251, HGNC:6342, HGNC:6345, HGNC:7553, HGNC:9666 DOI:10.1371/journal.pone.0162209 multi_loc +UBERON:0002371 Bone marrow Bone marrow CL:0000764 erythroid lineage cell mid erythroid HGNC:10006, HGNC:10008, HGNC:11272, HGNC:11763, HGNC:1663, HGNC:1663, HGNC:21256, HGNC:3349, HGNC:4702, HGNC:6342, HGNC:6345, HGNC:9666 multi_loc +UBERON:0002371 Bone marrow Bone marrow CL:0000764 erythroid lineage cell late erythroid HGNC:1093, HGNC:11763, HGNC:1663, HGNC:19911, HGNC:24040, HGNC:3349, HGNC:397, HGNC:4702, HGNC:4824, HGNC:4827, HGNC:4831, HGNC:6342, HGNC:9666 multi_loc +UBERON:0002371 Bone marrow Bone marrow CL:0000897 CD4-positive, alpha-beta memory T cell CD4 T cell memory HGNC:12029, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:2360, HGNC:26974, HGNC:4054, HGNC:537, HGNC:6563, HGNC:9666 Bone-Marrow +UBERON:0002371 Bone marrow Bone marrow CL:0000897 CD4-positive, alpha-beta memory T cell CD4 T cell memory HGNC:11362, HGNC:11892, HGNC:12029, HGNC:12729, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:19129, HGNC:19383, HGNC:6001, HGNC:6015, HGNC:6817, HGNC:7849, HGNC:8109, HGNC:9666, HGNC:9721 Bone-Marrow +UBERON:0002371 Bone marrow Bone marrow CL:0000990 conventional dendritic cell dendritic cell type 2 HGNC:11784, HGNC:1628, HGNC:1633, HGNC:1636, HGNC:1636, HGNC:1674, HGNC:16916, HGNC:3609, HGNC:3618, HGNC:3619, HGNC:4940, HGNC:4943, HGNC:6012, HGNC:6152, HGNC:7656 DOI:10.1016/j.immuni.2017.04.019 multi_loc +UBERON:0002371 Bone marrow Bone marrow CL:0000990 conventional dendritic cell dendritic cell type 1 HGNC:11784, HGNC:1625, HGNC:1628, HGNC:1633, HGNC:1636, HGNC:1674, HGNC:26705, HGNC:3619, HGNC:5951, HGNC:6012, HGNC:6152, HGNC:7656 DOI:10.3109/10428194.2013.781167 Bone-Marrow +UBERON:0002444 lens Fiber lens Fiber CL:0011004 lens fiber cell lens fiber cell HGNC:12692 DOI:10.1167/iovs.15-18117 Eye +UBERON:0002444 lens fiber lens Fibers CL:0011004 lens fiber cell lens fiber cell HGNC:7103 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:13600, HGNC:14454, HGNC:20391, HGNC:37219 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002600 limbic lobe limbic lobe CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:16953, HGNC:22128, HGNC:31401 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:27823, HGNC:8038 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:20821, HGNC:2210 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:27823 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:14454, HGNC:6140 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:6140 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:20821, HGNC:29426, HGNC:50507, HGNC:52895 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:8038 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:20303, HGNC:2210 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:14638, HGNC:49076 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:50507 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:21184, HGNC:2210, HGNC:50507 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:11963 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002600 limbic lobe limbic lobe CL:4023061 hippocampal CA4 neuron hippocampal CA4 neuron HGNC:18695, HGNC:8038 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023061 hippocampal CA4 neuron hippocampal CA4 neuron HGNC:13542, HGNC:1514, HGNC:6140 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023061 hippocampal CA4 neuron hippocampal CA4 neuron HGNC:10327, HGNC:24961 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023061 hippocampal CA4 neuron hippocampal CA4 neuron HGNC:14866, HGNC:2210, HGNC:27405, HGNC:6140 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023061 hippocampal CA4 neuron hippocampal CA4 neuron HGNC:25396, HGNC:4893 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023061 hippocampal CA4 neuron hippocampal CA4 neuron HGNC:53062 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023061 hippocampal CA4 neuron hippocampal CA4 neuron HGNC:53062, HGNC:6140 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023061 hippocampal CA4 neuron hippocampal CA4 neuron HGNC:14866, HGNC:16941, HGNC:25588, HGNC:45056 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023062 dentate gyrus neuron hippocampal dentate gyrus neuron HGNC:18695, HGNC:53147 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023062 dentate gyrus neuron hippocampal dentate gyrus neuron HGNC:16953 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023062 dentate gyrus neuron hippocampal dentate gyrus neuron HGNC:12405, HGNC:277 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023062 dentate gyrus neuron hippocampal dentate gyrus neuron HGNC:25588 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023062 dentate gyrus neuron hippocampal dentate gyrus neuron HGNC:1955, HGNC:32411 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023062 dentate gyrus neuron hippocampal dentate gyrus neuron HGNC:12405, HGNC:43436, HGNC:49076 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002743 basal forebrain basal forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:26299, HGNC:3020, HGNC:52997 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002743 basal forebrain basal forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:52997, HGNC:54353 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002743 basal forebrain basal forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:8831 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002743 basal forebrain basal forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:11517, HGNC:4243, HGNC:8831 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002743 basal forebrain basal forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:3023, HGNC:50645, HGNC:7154 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002743 basal forebrain basal forebrain CL:4023073 choroid plexus cell choroid plexus cell HGNC:356, HGNC:9211 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002743 basal forebrain basal forebrain CL:4023073 choroid plexus cell choroid plexus cell HGNC:5196 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002743 basal forebrain basal forebrain CL:4023073 choroid plexus cell choroid plexus cell HGNC:18083, HGNC:34, HGNC:9211 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0004203 cortical collecting duct Collecting Duct (Cortex) CL:1000714 kidney cortex collecting duct principal cell Cortical Collecting Duct Principal Cell HGNC:10602, HGNC:4028, HGNC:4172, HGNC:634, HGNC:634, HGNC:636 DOI:10.1038/s41467-019-10861-2|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1172/jci.insight.133267|PMID:31249312|PMCID:PMC6597610|PMID:31689386 Kidney +UBERON:0004203 cortical collecting duct Collecting Duct (Cortex) CL:1000714 kidney cortex collecting duct principal cell Cortical Collecting Duct Principal Cell HGNC:634, HGNC:634, HGNC:636 Kidney +UBERON:0004203 cortical collecting duct Collecting Duct (Cortex) CL:1000715 kidney cortex collecting duct intercalated cell Cortical Collecting Duct Intercalated Cell Type A HGNC:11027, HGNC:14467, HGNC:6342, HGNC:639 DOI:10.1038/s41467-019-10861-2|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|PMID:31249312|PMCID:PMC6597610|PMID:31689386 Kidney +UBERON:0004203 cortical collecting duct Collecting Duct CL:1000715 kidney cortex collecting duct intercalated cell Cortical Collecting Duct Intercalated Cell Type B HGNC:11035, HGNC:8818 DOI:10.1038/s41467-019-10861-2|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|DOI:10.1126/science.aat1699|PMID:31249312|PMCID:PMC6597610|PMID:31689386 Kidney +UBERON:0004645 urinary bladder urothelium urinary bladder urothelium CL:1001428 bladder urothelial cell urothelium HGNC:12578, HGNC:12580, HGNC:40603 multi_loc +UBERON:0004645 urinary bladder urothelium urinary bladder urothelium CL:1001428 bladder urothelial cell urothelium HGNC:15979, HGNC:384, HGNC:6415 multi_loc +UBERON:0004645 urinary bladder urothelium urinary bladder urothelium CL:1001428 bladder urothelial cell urothelium HGNC:10492, HGNC:2891, HGNC:6442 multi_loc +UBERON:0004849 respiratory system venous endothelium respiratory system venous endothelium CL:4033008 vein endothelial cell of respiratory system vein endothelial cell of respiratory system HGNC:12726, HGNC:16041, HGNC:19832, HGNC:2047, HGNC:30552, HGNC:35454, HGNC:4035, HGNC:4035, HGNC:7884, HGNC:7976, HGNC:8823 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 Lung +UBERON:0004849 respiratory system venous endothelium respiratory system venous endothelium CL:4033008 vein endothelial cell of respiratory system vein endothelial cell of respiratory system HGNC:13635, HGNC:19832, HGNC:2047, HGNC:35454, HGNC:4035, HGNC:7884 Lung +UBERON:0004849 respiratory system venous endothelium respiratory system venous endothelium CL:4033008 vein endothelial cell of respiratory system vein endothelial cell of respiratory system HGNC:19832, HGNC:2047, HGNC:35454, HGNC:7178, HGNC:7884 multi_loc +UBERON:0005751 glomerular visceral epithelium visceral epithelial layer CL:0000653 podocyte Podocyte HGNC:13394, HGNC:7908, HGNC:9171, HGNC:9679 Kidney +UBERON:0005751 glomerular visceral epithelium visceral epithelial layer CL:0000653 podocyte Podocyte HGNC:13394, HGNC:13517, HGNC:23319, HGNC:7908, HGNC:9171, HGNC:9171, HGNC:9679 DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41586-020-2941-1|DOI:10.1073/pnas.2005477117|PMID:31249312|PMCID:PMC6597610 Kidney +UBERON:0005751 glomerular visceral epithelium visceral epithelial layer CL:0000653 glomerular visceral epithelial cell Podocyte HGNC:13394, HGNC:7908, HGNC:9171, HGNC:9171, HGNC:9679 multi_loc +UBERON:0008974 apocrine gland apocrine gland CL:1000417 myoepithelial cell of sweat gland myoepithelial HGNC:130, HGNC:130 NoDOI multi_loc +UBERON:0008974 apocrine gland Apocrine glands CL:1000417 myoepithelial cell of sweat gland myoepithelial cell HGNC:4172, HGNC:8993 |DOI:10.1083/jcb.95.2.580|DOI:10.1046/j.0022-202x.2001.00005.x|DOI:10.1097/DAD.0000000000000306|PMID:6183275|PMID:11764285|PMID:26595821 Skin +UBERON:0009202 vasa recta descending limb Descending Vasa Recta CL:1001285 vasa recta descending limb cell Descending Vasa Recta Endothelial Cell HGNC:11853, HGNC:15846, HGNC:222, HGNC:8951 multi_loc +UBERON:0009202 vasa recta descending limb Descending Vasa Recta CL:1001285 vasa recta descending limb cell Descending Vasa Recta Endothelial Cell HGNC:11853, HGNC:12559, HGNC:15846, HGNC:222, HGNC:8951 Kidney +UBERON:0010397 efferent lymphatic vessel Efferent Lymphatics CL:0002138 endothelial cell of lymphatic vessel Lymphatic Endothelial Cell HGNC:11924, HGNC:14687, HGNC:1527, HGNC:1527, HGNC:1611, HGNC:1611, HGNC:29602, HGNC:6895, HGNC:7035, HGNC:8021, HGNC:8021, HGNC:8051, HGNC:8514, HGNC:8823, HGNC:9459, HGNC:9666 DOI:10.3389/fcvm.2020.00052|DOI:10.1016/j.immuni.2019.06.027|XiangM,GrossoRA,TakedaA,PanJ,BekkhusT,BruloisK,DermadiD,NordlingS,VanlandewijckM,JalkanenS,UlvmarMH,ButcherEC|ASingle-CellTranscriptionalRoadmapoftheMouseandHumanLymphNodeLymphaticVasculature|FrontCardiovascMed|2020Apr30;7:52|doi:10|3389/fcvm|2020|00052|PMID:32426372;PMCID:PMC7204639||TakedaA,HollménM,DermadiD,PanJ,BruloisKF,KaukonenR,LönnbergT,BoströmP,KoskivuoI,IrjalaH,MiyasakaM,SalmiM,ButcherEC,JalkanenS|Single-CellSurveyofHumanLymphaticsUnveilsMarkedEndothelialCellHeterogeneityandMechanismsofHomingforNeutrophils|Immunity|2019Sep17;513:561-572|e5|doi:10|1016/j|immuni|2019|06|027|Epub2019Aug8|PMID:31402260| multi_loc +UBERON:0010397 efferent lymphatic vessel efferent lymphatic CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelial cell HGNC:10620, HGNC:10690, HGNC:11757, HGNC:11760, HGNC:14687, HGNC:29612, HGNC:29990, HGNC:3560, HGNC:7178, HGNC:8038, HGNC:9459, HGNC:9459 DOI:10.1126/science.aay3224|DOI:10.1080/01926230600865549|PearseG|Normalstructure,functionandhistologyofthethymus|ToxicolPathol|2006;34(5):504-14|doi:10|1080/01926230600865549|PMID:17067941| multi_loc +UBERON:0012239 urinary bladder vasculature urinary bladder vasculature CL:0002597 smooth muscle cell of bladder smooth muscle HGNC:281, HGNC:45169, HGNC:6934 multi_loc +UBERON:0012239 urinary bladder vasculature urinary bladder vasculature CL:0002597 smooth muscle cell of bladder smooth muscle HGNC:1663, HGNC:45169, HGNC:895 multi_loc +UBERON:0012271 major duodenal papilla Major duodenal papilla CL:0000146 simple columnar epithelial cell Simple columnar epithelial cell HGNC:1884, HGNC:6107, HGNC:6436, HGNC:6445 Pancreas +UBERON:0012271 major duodenal papilla Major duodenal papilla CL:0000146 simple columnar epithelial cell Simple columnar epithelial cell HGNC:6107, HGNC:6436 Pancreas +UBERON:0018234 stroma of pancreas Stroma of pancreas CL:0002410 pancreatic stellate cell Pancreatic stellate cell HGNC:130, HGNC:5129, HGNC:5130, HGNC:6482 multi_loc +UBERON:0018234 stroma of pancreas Stroma of pancreas CL:0002410 pancreatic stellate cell Pancreatic stellate cell HGNC:8804 multi_loc +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:0000065 ependymal cell ependymal cell HGNC:8038 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:0000065 ependymal cell ependymal cell HGNC:18651, HGNC:37261, HGNC:42700 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:0000540 neuron neuron HGNC:35145 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:0000540 neuron neuron HGNC:30209 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:0000540 neuron neuron HGNC:37078, HGNC:9143 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:0000540 neuron neuron HGNC:11051, HGNC:19087, HGNC:5295, HGNC:8076 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:0000540 neuron neuron HGNC:19087, HGNC:19191 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:4023057 cerebellar inhibitory GABAergic interneuron cerebellar inhibitory HGNC:16438, HGNC:26256 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:4023057 cerebellar inhibitory GABAergic interneuron cerebellar inhibitory HGNC:11051, HGNC:2464, HGNC:9957 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:4023057 cerebellar inhibitory GABAergic interneuron cerebellar inhibitory HGNC:11051, HGNC:21184, HGNC:28867 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:4023057 cerebellar inhibitory GABAergic interneuron cerebellar inhibitory HGNC:24330 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:4023057 cerebellar inhibitory GABAergic interneuron cerebellar inhibitory HGNC:1077, HGNC:11743, HGNC:53587, HGNC:8029 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:4023057 cerebellar inhibitory GABAergic interneuron cerebellar inhibitory HGNC:16941, HGNC:20693, HGNC:2464, HGNC:53587 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000402 CNS interneuron CNS interneuron HGNC:10640, HGNC:10776, HGNC:1373, HGNC:30620 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000402 CNS interneuron CNS interneuron HGNC:16213, HGNC:16938, HGNC:19898 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000402 CNS interneuron CNS interneuron HGNC:10776, HGNC:16097, HGNC:25396, HGNC:30620 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000402 CNS interneuron CNS interneuron HGNC:9607 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000402 CNS interneuron CNS interneuron HGNC:3604, HGNC:40401 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000402 CNS interneuron CNS interneuron HGNC:2192, HGNC:2355 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000402 CNS interneuron CNS interneuron HGNC:10776, HGNC:13841 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000402 CNS interneuron CNS interneuron HGNC:12568, HGNC:24182, HGNC:4587 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:11521, HGNC:18695, HGNC:4324 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:14000, HGNC:25396, HGNC:7603 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:18695, HGNC:5997 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:21735, HGNC:3467, HGNC:44222, HGNC:50687 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:21735, HGNC:2594, HGNC:31700, HGNC:7976 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:14217, HGNC:3467 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:21735, HGNC:3666 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:14025, HGNC:28838 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:894 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:19664, HGNC:9218 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:1544, HGNC:37078, HGNC:9218 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:12873, HGNC:6593, HGNC:687 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:12872, HGNC:8518 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:5019, HGNC:6132, HGNC:687 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:19090, HGNC:23317, HGNC:44222 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:4172, HGNC:5154 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:14632, HGNC:52626 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:2500, HGNC:52467 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:10736, HGNC:19718, HGNC:20391, HGNC:53103 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:3009 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:1527, HGNC:16379, HGNC:20391 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:14265, HGNC:3446, HGNC:5977 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:16379 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:2500, HGNC:9035 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0012000 astrocyte of the forebrain astrocyte of the forebrain HGNC:3690, HGNC:42700, HGNC:43960, HGNC:5318 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0012000 astrocyte of the forebrain astrocyte of the forebrain HGNC:18081, HGNC:18374, HGNC:3690 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0012000 astrocyte of the forebrain astrocyte of the forebrain HGNC:14404, HGNC:27725, HGNC:42700, HGNC:4319 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0012001 neuron of the forebrain neuron of the forebrain HGNC:14454, HGNC:6694 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0012001 neuron of the forebrain neuron of the forebrain HGNC:51128, HGNC:52704, HGNC:54138 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0012001 neuron of the forebrain neuron of the forebrain HGNC:11191, HGNC:29426, HGNC:44222 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0012001 neuron of the forebrain neuron of the forebrain HGNC:2705, HGNC:4565 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:11353, HGNC:3020, HGNC:49260 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:3020 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:43643, HGNC:8831 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:26299, HGNC:8831 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:32696, HGNC:8831 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:3024, HGNC:7154 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:10669, HGNC:1409, HGNC:14632, HGNC:7000, HGNC:9609 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:3020, HGNC:9679 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:26002, HGNC:52997, HGNC:6483 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:45056, HGNC:4525, HGNC:8139 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:23729, HGNC:6132, HGNC:8569 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:11843, HGNC:15813, HGNC:19718, HGNC:26683, HGNC:37203, HGNC:4525 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:3023 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:11517, HGNC:16709, HGNC:4243 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:10669, HGNC:7000 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:10725, HGNC:14632, HGNC:4525, HGNC:7000 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:4525, HGNC:8620, HGNC:9446 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:4086, HGNC:8831 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:11526, HGNC:13875, HGNC:19718, HGNC:427 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:12769 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:19179, HGNC:52626 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:13600, HGNC:13741, HGNC:1544, HGNC:17108 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:21694, HGNC:219, HGNC:26076 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:13542 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:14217, HGNC:9035 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:27683, HGNC:53108 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023012 near-projecting glutamatergic cortical neuron near-projecting glutamatergic cortical neuron HGNC:2217, HGNC:23631, HGNC:31401 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023012 near-projecting glutamatergic cortical neuron near-projecting glutamatergic cortical neuron HGNC:16379, HGNC:24665 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023012 near-projecting glutamatergic cortical neuron near-projecting glutamatergic cortical neuron HGNC:5009, HGNC:52844 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023012 near-projecting glutamatergic cortical neuron near-projecting glutamatergic cortical neuron HGNC:16067, HGNC:22128, HGNC:3969 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023012 near-projecting glutamatergic cortical neuron near-projecting glutamatergic cortical neuron HGNC:11528, HGNC:26534, HGNC:41081 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023039 amygdala excitatory neuron amygdala excitatory neuron HGNC:26534 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023039 amygdala excitatory neuron amygdala excitatory neuron HGNC:11764, HGNC:13361, HGNC:30367 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023039 amygdala excitatory neuron amygdala excitatory neuron HGNC:14940, HGNC:26534 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023039 amygdala excitatory neuron Amygdala excitatory neuron HGNC:10593, HGNC:23392, HGNC:44222, HGNC:9609 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023039 amygdala excitatory neuron amygdala excitatory neuron HGNC:1753, HGNC:19718, HGNC:20779, HGNC:7001, HGNC:9446 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023039 amygdala excitatory neuron amygdala excitatory neuron HGNC:17318, HGNC:24323, HGNC:6690 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023039 amygdala excitatory neuron amygdala excitatory neuron HGNC:14222, HGNC:14615 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023039 amygdala excitatory neuron amygdala excitatory neuron HGNC:18374, HGNC:3372, HGNC:9957 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023039 amygdala excitatory neuron amygdala excitatory neuron HGNC:16953, HGNC:29426 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023039 amygdala excitatory neuron amygdala excitatory neuron HGNC:29399, HGNC:4525, HGNC:48724, HGNC:9595 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023039 amygdala excitatory neuron amygdala excitatory neuron HGNC:18549, HGNC:9595 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023039 amygdala excitatory neuron amygdala excitatory neuron HGNC:16709, HGNC:16953, HGNC:52626 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023039 amygdala excitatory neuron amygdala excitatory neuron HGNC:11528, HGNC:21063 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023039 amygdala excitatory neuron amygdala excitatory neuron HGNC:11764, HGNC:6483 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023039 amygdala excitatory neuron amygdala excitatory neuron HGNC:11528, HGNC:28020, HGNC:4525 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:16953 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:13542, HGNC:2654, HGNC:50507 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023063 medial ganglionic eminence derived interneuron MGE derived interneuron HGNC:11329, HGNC:12338, HGNC:2464 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023063 medial ganglionic eminence derived interneuron MGE derived interneuron HGNC:21591, HGNC:50507, HGNC:6111 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023063 medial ganglionic eminence derived interneuron MGE derived interneuron HGNC:11329, HGNC:16267, HGNC:8614 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023063 medial ganglionic eminence derived interneuron MGE derived interneuron HGNC:3604, HGNC:7955 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023063 medial ganglionic eminence derived interneuron MGE derived interneuron HGNC:11517, HGNC:26373, HGNC:7603 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023063 medial ganglionic eminence derived interneuron MGE derived interneuron HGNC:11521, HGNC:16231, HGNC:7955 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023063 medial ganglionic eminence derived interneuron MGE derived interneuron HGNC:6211 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023063 medial ganglionic eminence derived interneuron MGE derived interneuron HGNC:4893, HGNC:983 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023063 medial ganglionic eminence derived interneuron MGE derived interneuron HGNC:10723, HGNC:11329, HGNC:16421, HGNC:20754, HGNC:20866 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023063 medial ganglionic eminence derived interneuron MGE derived interneuron HGNC:11329, HGNC:52844, HGNC:6776 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023064 caudal ganglionic eminence derived interneuron CGE interneuron HGNC:10257, HGNC:10640, HGNC:1373, HGNC:2355 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023064 caudal ganglionic eminence derived interneuron CGE interneuron HGNC:11521 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023064 caudal ganglionic eminence derived interneuron CGE interneuron HGNC:3179, HGNC:7945 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023064 caudal ganglionic eminence derived interneuron CGE interneuron HGNC:10479, HGNC:12693, HGNC:2355 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023064 caudal ganglionic eminence derived interneuron CGE interneuron HGNC:10640, HGNC:11521, HGNC:19179, HGNC:28751 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023064 caudal ganglionic eminence derived interneuron CGE interneuron HGNC:6483 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023064 caudal ganglionic eminence derived interneuron CGE interneuron HGNC:16941, HGNC:2731 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023064 caudal ganglionic eminence derived interneuron CGE interneuron HGNC:3179, HGNC:5297 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023064 caudal ganglionic eminence derived interneuron CGE interneuron HGNC:10640, HGNC:26256, HGNC:7843 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023064 caudal ganglionic eminence derived interneuron CGE interneuron HGNC:12693, HGNC:8831 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023064 caudal ganglionic eminence derived interneuron CGE interneuron HGNC:18081, HGNC:1960, HGNC:2731 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023064 caudal ganglionic eminence derived interneuron CGE interneuron HGNC:5196, HGNC:6111 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023064 caudal ganglionic eminence derived interneuron CGE interneuron HGNC:12693, HGNC:15985 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023064 caudal ganglionic eminence derived interneuron CGE interneuron HGNC:10640, HGNC:19191, HGNC:25396 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023064 caudal ganglionic eminence derived interneuron CGE interneuron HGNC:10640, HGNC:14268, HGNC:2500 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023068 thalamic excitatory neuron thalamic excitatory neuron HGNC:28274, HGNC:49024 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023068 thalamic excitatory neuron thalamic excitatory neuron HGNC:50526, HGNC:8038, HGNC:9997 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023068 thalamic excitatory neuron thalamic excitatory neuron HGNC:17797, HGNC:18864 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023068 thalamic excitatory neuron thalamic excitatory neuron HGNC:21591 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023068 thalamic excitatory neuron thalamic excitatory neuron HGNC:23503, HGNC:25552, HGNC:26076 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023068 thalamic excitatory neuron thalamic excitatory neuron HGNC:13826, HGNC:49796 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023068 thalamic excitatory neuron thalamic excitatory neuron HGNC:18374, HGNC:6173, HGNC:9704 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023068 thalamic excitatory neuron thalamic excitatory neuron HGNC:1073, HGNC:11641, HGNC:23317, HGNC:53212 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023068 thalamic excitatory neuron thalamic excitatory neuron HGNC:3969, HGNC:49471 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023068 thalamic excitatory neuron thalamic excitatory neuron HGNC:1513, HGNC:16961 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023068 thalamic excitatory neuron thalamic excitatory neuron HGNC:14605, HGNC:1513 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023068 thalamic excitatory neuron thalamic excitatory neuron HGNC:1513, HGNC:3180, HGNC:8038 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023068 thalamic excitatory neuron thalamic excitatory neuron HGNC:3490, HGNC:7679 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023068 thalamic excitatory neuron thalamic excitatory neuron HGNC:32696 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023068 thalamic excitatory neuron thalamic excitatory neuron HGNC:11773, HGNC:18864, HGNC:23317, HGNC:52483 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:1514, HGNC:21641, HGNC:23631 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:25723, HGNC:43906, HGNC:53587, HGNC:7941 DOI:10.1101/2022.10.12.511898 Brain +UBERON:8410041 venule of lymph node Venule CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1662, HGNC:1697, HGNC:17474, HGNC:1764, HGNC:29602, HGNC:30455, HGNC:3763, HGNC:4035, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:6895, HGNC:8823, HGNC:8823, HGNC:9459, HGNC:9707 DOI:10.1371/journal.pone.0094781|DOI:10.1369/jhc.4A6514.2005|ParkSM,AngelCE,McIntoshJD,MansellC,ChenCJ,CebonJ,DunbarPR|Mappingthedistinctivepopulationsoflymphaticendothelialcellsindifferentzonesofhumanlymphnodes|PLoSOne|2014Apr14;94:e94781|doi:10|1371/journal|pone|0094781|Erratumin:PLoSOne|2014;98:e106814|Mansell,ClaudiaM[correctedtoMansell,ClaudiaJ]|PMID:24733110;PMCID:PMC3986404||PusztaszeriMP,SeelentagW,BosmanFT|ImmunohistochemicalexpressionofendothelialmarkersCD31,CD34,vonWillebrandfactor,andFli-1innormalhumantissues|JHistochemCytochem|2006Apr;544:385-95|doi:10|1369/jhc|4A6514|2005|Epub2005Oct18|PMID:16234507| Lymph_node +UBERON:8410041 venule of lymph node Venule CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1662, HGNC:1689, HGNC:1697, HGNC:17474, HGNC:1764, HGNC:29602, HGNC:30455, HGNC:3349, HGNC:4035, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:6895, HGNC:8823, HGNC:9459, HGNC:9707 DOI:10.1371/journal.pone.0094781|DOI:10.1369/jhc.4A6514.2005|NoDOI|ParkSM,AngelCE,McIntoshJD,MansellC,ChenCJ,CebonJ,DunbarPR|Mappingthedistinctivepopulationsoflymphaticendothelialcellsindifferentzonesofhumanlymphnodes|PLoSOne|2014Apr14;94:e94781|doi:10|1371/journal|pone|0094781|Erratumin:PLoSOne|2014;98:e106814|Mansell,ClaudiaM[correctedtoMansell,ClaudiaJ]|PMID:24733110;PMCID:PMC3986404||PusztaszeriMP,SeelentagW,BosmanFT|ImmunohistochemicalexpressionofendothelialmarkersCD31,CD34,vonWillebrandfactor,andFli-1innormalhumantissues|JHistochemCytochem|2006Apr;544:385-95|doi:10|1369/jhc|4A6514|2005|Epub2005Oct18|PMID:16234507| multi_loc +UBERON:8410042 arteriole of lymph node Arteriole CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1662, HGNC:1697, HGNC:17474, HGNC:1764, HGNC:29602, HGNC:30455, HGNC:3349, HGNC:3763, HGNC:4035, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:6895, HGNC:8823, HGNC:9459, HGNC:9707 DOI:10.1371/journal.pone.0094781|DOI:10.1369/jhc.4A6514.2005|ParkSM,AngelCE,McIntoshJD,MansellC,ChenCJ,CebonJ,DunbarPR|Mappingthedistinctivepopulationsoflymphaticendothelialcellsindifferentzonesofhumanlymphnodes|PLoSOne|2014Apr14;94:e94781|doi:10|1371/journal|pone|0094781|Erratumin:PLoSOne|2014;98:e106814|Mansell,ClaudiaM[correctedtoMansell,ClaudiaJ]|PMID:24733110;PMCID:PMC3986404||PusztaszeriMP,SeelentagW,BosmanFT|ImmunohistochemicalexpressionofendothelialmarkersCD31,CD34,vonWillebrandfactor,andFli-1innormalhumantissues|JHistochemCytochem|2006Apr;544:385-95|doi:10|1369/jhc|4A6514|2005|Epub2005Oct18|PMID:16234507| Lymph_node +UBERON:8410042 arteriole of lymph node Arteriole CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1662, HGNC:1689, HGNC:1697, HGNC:17474, HGNC:1764, HGNC:29602, HGNC:30455, HGNC:3349, HGNC:4035, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:6895, HGNC:8823, HGNC:9459, HGNC:9707 DOI:10.1371/journal.pone.0094781|DOI:10.1369/jhc.4A6514.2005|NoDOI|ParkSM,AngelCE,McIntoshJD,MansellC,ChenCJ,CebonJ,DunbarPR|Mappingthedistinctivepopulationsoflymphaticendothelialcellsindifferentzonesofhumanlymphnodes|PLoSOne|2014Apr14;94:e94781|doi:10|1371/journal|pone|0094781|Erratumin:PLoSOne|2014;98:e106814|Mansell,ClaudiaM[correctedtoMansell,ClaudiaJ]|PMID:24733110;PMCID:PMC3986404||PusztaszeriMP,SeelentagW,BosmanFT|ImmunohistochemicalexpressionofendothelialmarkersCD31,CD34,vonWillebrandfactor,andFli-1innormalhumantissues|JHistochemCytochem|2006Apr;544:385-95|doi:10|1369/jhc|4A6514|2005|Epub2005Oct18|PMID:16234507| multi_loc +UBERON:8410042 arteriole of lymph node Arteriole CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1662, HGNC:1697, HGNC:17474, HGNC:30455, HGNC:4035, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:6895, HGNC:8823, HGNC:9707 DOI:10.1369/jhc.4A6514.2005|PusztaszeriMP,SeelentagW,BosmanFT|ImmunohistochemicalexpressionofendothelialmarkersCD31,CD34,vonWillebrandfactor,andFli-1innormalhumantissues|JHistochemCytochem|2006Apr;544:385-95|doi:10|1369/jhc|4A6514|2005|Epub2005Oct18|PMID:16234507| Lymph_node +UBERON:8410042 arteriole of lymph node Arteriole CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1662, HGNC:1697, HGNC:17474, HGNC:1764, HGNC:29602, HGNC:30455, HGNC:3349, HGNC:4035, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:6895, HGNC:8823, HGNC:9459, HGNC:9707 DOI:10.1371/journal.pone.0094781|DOI:10.1369/jhc.4A6514.2005|ParkSM,AngelCE,McIntoshJD,MansellC,ChenCJ,CebonJ,DunbarPR|Mappingthedistinctivepopulationsoflymphaticendothelialcellsindifferentzonesofhumanlymphnodes|PLoSOne|2014Apr14;94:e94781|doi:10|1371/journal|pone|0094781|Erratumin:PLoSOne|2014;98:e106814|Mansell,ClaudiaM[correctedtoMansell,ClaudiaJ]|PMID:24733110;PMCID:PMC3986404||PusztaszeriMP,SeelentagW,BosmanFT|ImmunohistochemicalexpressionofendothelialmarkersCD31,CD34,vonWillebrandfactor,andFli-1innormalhumantissues|JHistochemCytochem|2006Apr;544:385-95|doi:10|1369/jhc|4A6514|2005|Epub2005Oct18|PMID:16234507| Lymph_node +UBERON:8600013 submucosal gland collecting duct submucosal gland collecting duct CL:4033024 airway submucosal gland duct basal cell airway submucosal gland duct basal cell HGNC:11529, HGNC:15979, HGNC:15979, HGNC:1748, HGNC:20657, HGNC:3318, HGNC:3800, HGNC:3800, HGNC:4027, HGNC:6416, HGNC:6416, HGNC:6442, HGNC:6442 multi_loc +UBERON:8600013 submucosal gland collecting duct submucosal gland collecting duct CL:4033024 airway submucosal gland duct basal cell airway submucosal gland duct basal cell HGNC:11529, HGNC:15979, HGNC:15979, HGNC:1748, HGNC:20657, HGNC:3318, HGNC:3800, HGNC:4027, HGNC:6416, HGNC:6416, HGNC:6442, HGNC:6442, HGNC:7809 multi_loc diff --git a/logs/ct_loc_markers/ct_loc_b_report.tsv b/logs/ct_loc_markers/ct_loc_b_report.tsv new file mode 100644 index 000000000..5be937809 --- /dev/null +++ b/logs/ct_loc_markers/ct_loc_b_report.tsv @@ -0,0 +1,1908 @@ +Terminal AS/ID Terminal AS/label Terminal AS/user_label Terminal CT/ID Terminal CT/label Terminal CT/user_label Markers References Table +UBERON:0008974 apocrine gland apocrine gland CL:0000033 apocrine cell apocrine HGNC:6445, HGNC:6445 NoDOI Large_intestine +UBERON:0002371 Bone marrow Bone marrow CL:0000037 hematopoietic stem cell hemopoietic stem cell HGNC:1036, HGNC:11801, HGNC:1628, HGNC:1633, HGNC:1639, HGNC:1662, HGNC:1667, HGNC:1674, HGNC:2356, HGNC:3619, HGNC:4702, HGNC:4977, HGNC:4977, HGNC:7136, HGNC:7656, HGNC:7945, HGNC:894, HGNC:9454, HGNC:9666 Bone-Marrow +UBERON:0001266 splenic cord Splenic Cord CL:0000037 hematopoetic stem cell Hematopoetic Stem Cell HGNC:11200, HGNC:11801, HGNC:1633, HGNC:1662, HGNC:1667, HGNC:17890, HGNC:2298, HGNC:5870, HGNC:9666 DOI:10.1111/imcb.12035|DOI:10.1101/2020.01.26.919753 Spleen +UBERON:0013485 crypt of Lieberkuhn of colon crypt CL:0000041 mature eosinophil eosinophil HGNC:4502, HGNC:4502, HGNC:6149, HGNC:6149 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 Large_intestine +UBERON:0001961 mucosa-associated lymphoid tissue dermal skin-associated lymphoid tissue CL:0000041 mature eosinophil eosinophil HGNC:4502, HGNC:4502, HGNC:6149, HGNC:6149 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 Large_intestine +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/lamina propria CL:0000041 mature eosinophil eosinophil HGNC:4502, HGNC:4502, HGNC:6149, HGNC:6149 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 Large_intestine +UBERON:0002371 Bone marrow Bone marrow CL:0000049 common myeloid progenitor common myeloid progenitor HGNC:1628, HGNC:1662, HGNC:1667, HGNC:1674, HGNC:24435, HGNC:3311, HGNC:3619, HGNC:3765, HGNC:4171, HGNC:5154, HGNC:6012, HGNC:7028, HGNC:7656, HGNC:9666 DOI:10.1038/ni.1889 Bone-Marrow +UBERON:0002371 Bone marrow Bone marrow CL:0000050 megakaryocyte-erythroid progenitor cell megakaryocyte-erythroid-mast cell progenitor HGNC:11245, HGNC:15879, HGNC:1628, HGNC:1662, HGNC:1662, HGNC:1667, HGNC:1674, HGNC:29109, HGNC:31397, HGNC:3619, HGNC:3765, HGNC:4170, HGNC:4171, HGNC:5992, HGNC:6012, HGNC:7656, HGNC:9666 DOI:10.1038/ni.1889 Bone-Marrow +UBERON:0002371 Bone marrow Bone marrow CL:0000051 common lymphoid progenitor common lymphoid progenitor HGNC:12560, HGNC:12749, HGNC:1628, HGNC:16505, HGNC:1662, HGNC:1667, HGNC:1674, HGNC:186, HGNC:3619, HGNC:6024, HGNC:7203, HGNC:7656, HGNC:9352 Bone-Marrow +UBERON:0035422 circumflex branch of left coronary artery left circumflex artery CL:0000057 fibroblast fibroblast HGNC:2705, HGNC:4620, HGNC:8803 Heart +UBERON:0000955 brain brain CL:0000057 fibroblast fibroblast HGNC:11040 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000057 fibroblast fibroblast HGNC:30988, HGNC:9591 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000057 fibroblast fibroblast HGNC:3770, HGNC:38, HGNC:53007 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000057 fibroblast fibroblast HGNC:1077, HGNC:11005, HGNC:19090 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000057 fibroblast fibroblast HGNC:11595, HGNC:6715 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002094 interventricular septum septum CL:0000057 fibroblast fibroblast HGNC:2705, HGNC:4620, HGNC:8803 Heart +UBERON:0000955 brain brain CL:0000057 fibroblast fibroblast HGNC:1346, HGNC:2198, HGNC:3601 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000057 fibroblast fibroblast HGNC:2192, HGNC:30927 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000057 fibroblast fibroblast HGNC:1072, HGNC:1346 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000057 fibroblast fibroblast HGNC:1346, HGNC:2198, HGNC:3601 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000057 fibroblast fibroblast HGNC:11595, HGNC:6715 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000057 fibroblast fibroblast HGNC:1077, HGNC:11005, HGNC:19090 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000057 fibroblast fibroblast HGNC:3770, HGNC:38, HGNC:53007 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000057 fibroblast fibroblast HGNC:1072, HGNC:1346 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0035374 small cardiac vein small cardiac vein CL:0000057 fibroblast fibroblast HGNC:2705, HGNC:4620, HGNC:8803 Heart +UBERON:0002049 vasculature vasculature CL:0000057 fibroblast fibroblast HGNC:2705, HGNC:4620, HGNC:8803 Heart +UBERON:0009687 middle cardiac vein middle cardiac vein CL:0000057 fibroblast fibroblast HGNC:2705, HGNC:8803 Heart +UBERON:0007177 lamina propria of mucosa of colon lamina propria CL:0000057 fibroblast fibroblast HGNC:2211, HGNC:2211, HGNC:2212, HGNC:2212 DOI:10.1111/j.1440-1827.1989.tb02421.x|DOI:10.1034/j.1600-065x.2003.00072.x|PMID:2618659|PMID:12969318 Large_intestine +UBERON:0012398 large intestine smooth muscle circular layer circular muscle layer CL:0000057 fibroblast fibroblast HGNC:2211, HGNC:2211, HGNC:2212, HGNC:2212 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 Large_intestine +UBERON:0011189 lamina propria of large intestine lamina propria CL:0000057 fibroblast fibroblast HGNC:2211, HGNC:2211, HGNC:2212, HGNC:2212 DOI:10.1111/j.1440-1827.1989.tb02421.x|DOI:10.1034/j.1600-065x.2003.00072.x|PMID:2618659|PMID:12969318 Large_intestine +UBERON:0012375 subserosa subserosa CL:0000057 fibroblast fibroblast HGNC:2211, HGNC:2211, HGNC:2212, HGNC:2212 NoDOI Large_intestine +UBERON:0002384 connective tissue fibroconnective tissue CL:0000057 fibroblast fibroblast HGNC:2211, HGNC:2211, HGNC:2212, HGNC:2212 NoDOI Large_intestine +UBERON:0004927 submucosa of cecum submucosa CL:0000057 fibroblast fibroblast HGNC:2211, HGNC:2211, HGNC:2212, HGNC:2212 NoDOI Large_intestine +UBERON:0012399 large intestine smooth muscle longitudinal layer longitudinal muscle layer CL:0000057 fibroblast fibroblast HGNC:2211, HGNC:2211, HGNC:2212, HGNC:2212 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 Large_intestine +UBERON:0006958 great cardiac vein great cardiac vein CL:0000057 fibroblast fibroblast HGNC:2705, HGNC:4620, HGNC:8803 Heart +UBERON:0007178 muscularis mucosae of colon muscularis mucosa CL:0000057 fibroblast fibroblast HGNC:2211, HGNC:2211, HGNC:2212, HGNC:2212 NoDOI Large_intestine +UBERON:0002439 myenteric nerve plexus myenteric plexus of Auerbach CL:0000057 fibroblast fibroblast HGNC:2211, HGNC:2211, HGNC:2212, HGNC:2212 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 Large_intestine +UBERON:0003331 submucosa of colon submucosa CL:0000057 fibroblast fibroblast HGNC:2211, HGNC:2211, HGNC:2212, HGNC:2212 NoDOI Large_intestine +UBERON:0005742 adventitia adventitia CL:0000057 fibroblast fibroblast HGNC:2211, HGNC:2211, HGNC:2212, HGNC:2212 NoDOI Large_intestine +UBERON:0001625 right coronary artery right coronary artery CL:0000057 fibroblast fibroblast HGNC:2705, HGNC:4620, HGNC:8803 Heart +UBERON:0002348 epicardium Epicardium CL:0000057 fibroblast fibroblast HGNC:2705, HGNC:4620, HGNC:8803 Heart +UBERON:0000955 brain brain CL:0000057 fibroblast fibroblast HGNC:30988, HGNC:9591 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0005438 coronary sinus coronary sinus CL:0000057 fibroblast fibroblast HGNC:2705, HGNC:4620, HGNC:8803 Heart +UBERON:0003329 submucosa of anal canal submucosa CL:0000057 fibroblast fibroblast HGNC:2211, HGNC:2211, HGNC:2212, HGNC:2212 NoDOI Large_intestine +UBERON:0000955 brain brain CL:0000057 fibroblast fibroblast HGNC:11040 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000057 fibroblast fibroblast HGNC:2192, HGNC:30927 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0009980 condyle of femur Distal Femur CL:0000062 osteoblast osteoblast HGNC:2197, HGNC:5341 Knee +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:0000065 ependymal cell ependymal cell HGNC:8038 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000065 ependymal cell ependymal cell HGNC:12261, HGNC:27287, HGNC:8239 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000065 ependymal cell ependymal cell HGNC:1487, HGNC:2360, HGNC:8239 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000065 ependymal cell ependymal cell HGNC:1487 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000065 ependymal cell ependymal cell HGNC:12261, HGNC:27287, HGNC:8239 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000065 ependymal cell ependymal cell HGNC:8239 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000065 ependymal cell ependymal cell HGNC:12405, HGNC:37261 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000065 ependymal cell ependymal cell HGNC:28395, HGNC:37261 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:0000065 ependymal cell ependymal cell HGNC:18651, HGNC:37261, HGNC:42700 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000065 ependymal cell ependymal cell HGNC:3690, HGNC:37261, HGNC:5318 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000065 ependymal cell ependymal cell HGNC:12405, HGNC:37261 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000065 ependymal cell ependymal cell HGNC:28395, HGNC:37261 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000065 ependymal cell ependymal cell HGNC:1487 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000065 ependymal cell ependymal cell HGNC:1487, HGNC:2360, HGNC:8239 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:0000065 ependymal cell ependymal cell HGNC:8038 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000065 ependymal cell ependymal cell HGNC:3690, HGNC:37261, HGNC:5318 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:0000065 ependymal cell ependymal cell HGNC:18651, HGNC:37261, HGNC:42700 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000065 ependymal cell ependymal cell HGNC:8239 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002506 iris epithelium iris epithelium CL:0000066 epithelial cell epithelial cell HGNC:633, HGNC:637, HGNC:800 DOI:10.3390/cell7110210 Eye +UBERON:0001310 umbilical artery umbilical arteries CL:0000071 blood vessel endothelial cell vascular endothelial cells HGNC:12726, HGNC:6934, HGNC:8823 PMID:8804361|doi:10.1155/2021/6662201|doi:10.1093/humrep/dem265|doi:10.1290/1071-2690(2001)037<0408:IOECFH>2.0.CO;2|DOI:10.1093/oxfordjournals.humrep.a136040|doi.org/10.1371/journal.pone.0169849|doi.org/10.1371/journal.pone.0169849|PMID:8804361 Placenta +UBERON:0002066 umbilical vein umbilical vein CL:0000071 blood vessel endothelial cell vascular endothelial cells HGNC:12726, HGNC:6934, HGNC:8823 PMID:8804361|doi:10.1155/2021/6662201|doi:10.1093/humrep/dem265|doi:10.1290/1071-2690(2001)037<0408:IOECFH>2.0.CO;2|DOI:10.1093/oxfordjournals.humrep.a136040|doi.org/10.1371/journal.pone.0169849|doi.org/10.1371/journal.pone.0169849|PMID:8804361 Placenta +UBERON:8410042 arteriole of lymph node Arteriole CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1662, HGNC:1697, HGNC:17474, HGNC:1764, HGNC:29602, HGNC:30455, HGNC:3349, HGNC:3763, HGNC:4035, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:6895, HGNC:8823, HGNC:9459, HGNC:9707 DOI:10.1371/journal.pone.0094781|DOI:10.1369/jhc.4A6514.2005|ParkSM,AngelCE,McIntoshJD,MansellC,ChenCJ,CebonJ,DunbarPR|Mappingthedistinctivepopulationsoflymphaticendothelialcellsindifferentzonesofhumanlymphnodes|PLoSOne|2014Apr14;94:e94781|doi:10|1371/journal|pone|0094781|Erratumin:PLoSOne|2014;98:e106814|Mansell,ClaudiaM[correctedtoMansell,ClaudiaJ]|PMID:24733110;PMCID:PMC3986404||PusztaszeriMP,SeelentagW,BosmanFT|ImmunohistochemicalexpressionofendothelialmarkersCD31,CD34,vonWillebrandfactor,andFli-1innormalhumantissues|JHistochemCytochem|2006Apr;544:385-95|doi:10|1369/jhc|4A6514|2005|Epub2005Oct18|PMID:16234507| Lymph_node +UBERON:8410041 venule of lymph node Venule CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1662, HGNC:1697, HGNC:17474, HGNC:1764, HGNC:29602, HGNC:30455, HGNC:3763, HGNC:4035, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:6895, HGNC:8823, HGNC:8823, HGNC:9459, HGNC:9707 DOI:10.1371/journal.pone.0094781|DOI:10.1369/jhc.4A6514.2005|ParkSM,AngelCE,McIntoshJD,MansellC,ChenCJ,CebonJ,DunbarPR|Mappingthedistinctivepopulationsoflymphaticendothelialcellsindifferentzonesofhumanlymphnodes|PLoSOne|2014Apr14;94:e94781|doi:10|1371/journal|pone|0094781|Erratumin:PLoSOne|2014;98:e106814|Mansell,ClaudiaM[correctedtoMansell,ClaudiaJ]|PMID:24733110;PMCID:PMC3986404||PusztaszeriMP,SeelentagW,BosmanFT|ImmunohistochemicalexpressionofendothelialmarkersCD31,CD34,vonWillebrandfactor,andFli-1innormalhumantissues|JHistochemCytochem|2006Apr;544:385-95|doi:10|1369/jhc|4A6514|2005|Epub2005Oct18|PMID:16234507| Lymph_node +UBERON:0007106 chorionic villus chorionic villous CL:0000071 blood vessel endothelial cell vascular endothelial cells HGNC:12726, HGNC:6934, HGNC:8823 PMID:8804361|doi:10.1155/2021/6662201|doi:10.1093/humrep/dem265|doi:10.1290/1071-2690(2001)037<0408:IOECFH>2.0.CO;2|DOI:10.1093/oxfordjournals.humrep.a136040|doi.org/10.1371/journal.pone.0169849|doi.org/10.1371/journal.pone.0169849|PMID:8804361 Placenta +UBERON:8410034 lymph node artery Lymphatic Artery CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1662, HGNC:1689, HGNC:1697, HGNC:17474, HGNC:1764, HGNC:29602, HGNC:30455, HGNC:3349, HGNC:4035, HGNC:4279, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:5344, HGNC:6895, HGNC:8823, HGNC:9459, HGNC:9707 DOI:10.1007/s00441-008-0706-5|delaPazNG,D'AmorePA|Arterialversusvenousendothelialcells|CellTissueRes|2009Jan;3351:5-16|doi:10|1007/s00441-008-0706-5|Epub2008Oct30|PMID:18972135;PMCID:PMC4105978| Lymph_node +UBERON:8410042 arteriole of lymph node Arteriole CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1662, HGNC:1697, HGNC:17474, HGNC:1764, HGNC:29602, HGNC:30455, HGNC:3349, HGNC:3763, HGNC:4035, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:6895, HGNC:8823, HGNC:9459, HGNC:9707 DOI:10.1371/journal.pone.0094781|DOI:10.1369/jhc.4A6514.2005|ParkSM,AngelCE,McIntoshJD,MansellC,ChenCJ,CebonJ,DunbarPR|Mappingthedistinctivepopulationsoflymphaticendothelialcellsindifferentzonesofhumanlymphnodes|PLoSOne|2014Apr14;94:e94781|doi:10|1371/journal|pone|0094781|Erratumin:PLoSOne|2014;98:e106814|Mansell,ClaudiaM[correctedtoMansell,ClaudiaJ]|PMID:24733110;PMCID:PMC3986404||PusztaszeriMP,SeelentagW,BosmanFT|ImmunohistochemicalexpressionofendothelialmarkersCD31,CD34,vonWillebrandfactor,andFli-1innormalhumantissues|JHistochemCytochem|2006Apr;544:385-95|doi:10|1369/jhc|4A6514|2005|Epub2005Oct18|PMID:16234507| multi_loc +UBERON:8410041 venule of lymph node Venule CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1662, HGNC:1697, HGNC:17474, HGNC:1764, HGNC:29602, HGNC:30455, HGNC:3763, HGNC:4035, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:6895, HGNC:8823, HGNC:8823, HGNC:9459, HGNC:9707 DOI:10.1371/journal.pone.0094781|DOI:10.1369/jhc.4A6514.2005|ParkSM,AngelCE,McIntoshJD,MansellC,ChenCJ,CebonJ,DunbarPR|Mappingthedistinctivepopulationsoflymphaticendothelialcellsindifferentzonesofhumanlymphnodes|PLoSOne|2014Apr14;94:e94781|doi:10|1371/journal|pone|0094781|Erratumin:PLoSOne|2014;98:e106814|Mansell,ClaudiaM[correctedtoMansell,ClaudiaJ]|PMID:24733110;PMCID:PMC3986404||PusztaszeriMP,SeelentagW,BosmanFT|ImmunohistochemicalexpressionofendothelialmarkersCD31,CD34,vonWillebrandfactor,andFli-1innormalhumantissues|JHistochemCytochem|2006Apr;544:385-95|doi:10|1369/jhc|4A6514|2005|Epub2005Oct18|PMID:16234507| multi_loc +UBERON:8410042 arteriole of lymph node Arteriole CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1662, HGNC:1689, HGNC:1697, HGNC:17474, HGNC:1764, HGNC:29602, HGNC:30455, HGNC:3349, HGNC:4035, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:6895, HGNC:8823, HGNC:9459, HGNC:9707 DOI:10.1371/journal.pone.0094781|DOI:10.1369/jhc.4A6514.2005|NoDOI|ParkSM,AngelCE,McIntoshJD,MansellC,ChenCJ,CebonJ,DunbarPR|Mappingthedistinctivepopulationsoflymphaticendothelialcellsindifferentzonesofhumanlymphnodes|PLoSOne|2014Apr14;94:e94781|doi:10|1371/journal|pone|0094781|Erratumin:PLoSOne|2014;98:e106814|Mansell,ClaudiaM[correctedtoMansell,ClaudiaJ]|PMID:24733110;PMCID:PMC3986404||PusztaszeriMP,SeelentagW,BosmanFT|ImmunohistochemicalexpressionofendothelialmarkersCD31,CD34,vonWillebrandfactor,andFli-1innormalhumantissues|JHistochemCytochem|2006Apr;544:385-95|doi:10|1369/jhc|4A6514|2005|Epub2005Oct18|PMID:16234507| multi_loc +UBERON:0018243 thymic artery thymic artery CL:0000071 blood vessel endothelial cell blood endothelial cell HGNC:10044, HGNC:11220, HGNC:11853, HGNC:13635, HGNC:5397, HGNC:633, HGNC:6722, HGNC:7, HGNC:7899, HGNC:8823, HGNC:9844 DOI:10.1126/science.aay3224|DOI:10.1080/01926230600865549|PearseG|Normalstructure,functionandhistologyofthethymus|ToxicolPathol|2006;34(5):504-14|doi:10|1080/01926230600865549|PMID:17067941| Thymus +UBERON:0001591 thymic vein thymic vein CL:0000071 blood vessel endothelial cell blood endothelial cell HGNC:10044, HGNC:11220, HGNC:11853, HGNC:13635, HGNC:5397, HGNC:633, HGNC:6722, HGNC:7, HGNC:7899, HGNC:8823, HGNC:9844 DOI:10.1126/science.aay3224|DOI:10.1080/01926230600865549|PearseG|Normalstructure,functionandhistologyofthethymus|ToxicolPathol|2006;34(5):504-14|doi:10|1080/01926230600865549|PMID:17067941| Thymus +UBERON:8410041 venule of lymph node Venule CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1662, HGNC:1689, HGNC:1697, HGNC:17474, HGNC:1764, HGNC:29602, HGNC:30455, HGNC:3349, HGNC:4035, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:6895, HGNC:8823, HGNC:9459, HGNC:9707 DOI:10.1371/journal.pone.0094781|DOI:10.1369/jhc.4A6514.2005|NoDOI|ParkSM,AngelCE,McIntoshJD,MansellC,ChenCJ,CebonJ,DunbarPR|Mappingthedistinctivepopulationsoflymphaticendothelialcellsindifferentzonesofhumanlymphnodes|PLoSOne|2014Apr14;94:e94781|doi:10|1371/journal|pone|0094781|Erratumin:PLoSOne|2014;98:e106814|Mansell,ClaudiaM[correctedtoMansell,ClaudiaJ]|PMID:24733110;PMCID:PMC3986404||PusztaszeriMP,SeelentagW,BosmanFT|ImmunohistochemicalexpressionofendothelialmarkersCD31,CD34,vonWillebrandfactor,andFli-1innormalhumantissues|JHistochemCytochem|2006Apr;544:385-95|doi:10|1369/jhc|4A6514|2005|Epub2005Oct18|PMID:16234507| multi_loc +UBERON:8410042 arteriole of lymph node Arteriole CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1662, HGNC:1697, HGNC:17474, HGNC:30455, HGNC:4035, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:6895, HGNC:8823, HGNC:9707 DOI:10.1369/jhc.4A6514.2005|PusztaszeriMP,SeelentagW,BosmanFT|ImmunohistochemicalexpressionofendothelialmarkersCD31,CD34,vonWillebrandfactor,andFli-1innormalhumantissues|JHistochemCytochem|2006Apr;544:385-95|doi:10|1369/jhc|4A6514|2005|Epub2005Oct18|PMID:16234507| Lymph_node +UBERON:8410066 lymph node paracortex Paracortex CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1662, HGNC:1697, HGNC:17474, HGNC:30455, HGNC:4035, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:6895, HGNC:8823, HGNC:9707 DOI:10.1369/jhc.4A6514.2005|NoDOI|PusztaszeriMP,SeelentagW,BosmanFT|ImmunohistochemicalexpressionofendothelialmarkersCD31,CD34,vonWillebrandfactor,andFli-1innormalhumantissues|JHistochemCytochem|2006Apr;544:385-95|doi:10|1369/jhc|4A6514|2005|Epub2005Oct18|PMID:16234507| Lymph_node +UBERON:8410038 high endothelial venule of lymph node High Endothelial Venule CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:130, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1697, HGNC:17474, HGNC:2203, HGNC:29909, HGNC:30455, HGNC:4035, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:6012, HGNC:6895, HGNC:8823, HGNC:9707 DOI:10.1038/nri32982012.|GirardJP,MoussionC,FörsterR|HEVs,lymphaticsandhomeostaticimmunecelltraffickinginlymphnodes|NatRevImmunol|2012Nov;1211:762-73|doi:10|1038/nri3298|Epub2012Sep28|PMID:23018291| Lymph_node +UBERON:8410035 medullary arteriole of lymph node Arteriole CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1662, HGNC:1697, HGNC:17474, HGNC:1764, HGNC:29602, HGNC:30455, HGNC:3349, HGNC:4035, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:6895, HGNC:8823, HGNC:9459, HGNC:9707 DOI:10.1371/journal.pone.0094781|DOI:10.1369/jhc.4A6514.2005|ParkSM,AngelCE,McIntoshJD,MansellC,ChenCJ,CebonJ,DunbarPR|Mappingthedistinctivepopulationsoflymphaticendothelialcellsindifferentzonesofhumanlymphnodes|PLoSOne|2014Apr14;94:e94781|doi:10|1371/journal|pone|0094781|Erratumin:PLoSOne|2014;98:e106814|Mansell,ClaudiaM[correctedtoMansell,ClaudiaJ]|PMID:24733110;PMCID:PMC3986404||PusztaszeriMP,SeelentagW,BosmanFT|ImmunohistochemicalexpressionofendothelialmarkersCD31,CD34,vonWillebrandfactor,andFli-1innormalhumantissues|JHistochemCytochem|2006Apr;544:385-95|doi:10|1369/jhc|4A6514|2005|Epub2005Oct18|PMID:16234507| Lymph_node +UBERON:8410042 arteriole of lymph node Arteriole CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1662, HGNC:1697, HGNC:17474, HGNC:1764, HGNC:29602, HGNC:30455, HGNC:3349, HGNC:4035, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:6895, HGNC:8823, HGNC:9459, HGNC:9707 DOI:10.1371/journal.pone.0094781|DOI:10.1369/jhc.4A6514.2005|ParkSM,AngelCE,McIntoshJD,MansellC,ChenCJ,CebonJ,DunbarPR|Mappingthedistinctivepopulationsoflymphaticendothelialcellsindifferentzonesofhumanlymphnodes|PLoSOne|2014Apr14;94:e94781|doi:10|1371/journal|pone|0094781|Erratumin:PLoSOne|2014;98:e106814|Mansell,ClaudiaM[correctedtoMansell,ClaudiaJ]|PMID:24733110;PMCID:PMC3986404||PusztaszeriMP,SeelentagW,BosmanFT|ImmunohistochemicalexpressionofendothelialmarkersCD31,CD34,vonWillebrandfactor,andFli-1innormalhumantissues|JHistochemCytochem|2006Apr;544:385-95|doi:10|1369/jhc|4A6514|2005|Epub2005Oct18|PMID:16234507| Lymph_node +UBERON:8410036 medullary venule of lymph node Venule CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1662, HGNC:1697, HGNC:17474, HGNC:1764, HGNC:29602, HGNC:30455, HGNC:3349, HGNC:4035, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:6895, HGNC:8823, HGNC:9459, HGNC:9707 DOI:10.1371/journal.pone.0094781|DOI:10.1369/jhc.4A6514.2005|ParkSM,AngelCE,McIntoshJD,MansellC,ChenCJ,CebonJ,DunbarPR|Mappingthedistinctivepopulationsoflymphaticendothelialcellsindifferentzonesofhumanlymphnodes|PLoSOne|2014Apr14;94:e94781|doi:10|1371/journal|pone|0094781|Erratumin:PLoSOne|2014;98:e106814|Mansell,ClaudiaM[correctedtoMansell,ClaudiaJ]|PMID:24733110;PMCID:PMC3986404||PusztaszeriMP,SeelentagW,BosmanFT|ImmunohistochemicalexpressionofendothelialmarkersCD31,CD34,vonWillebrandfactor,andFli-1innormalhumantissues|JHistochemCytochem|2006Apr;544:385-95|doi:10|1369/jhc|4A6514|2005|Epub2005Oct18|PMID:16234507| Lymph_node +UBERON:8410041 venule of lymph node Venule CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1662, HGNC:1689, HGNC:1697, HGNC:17474, HGNC:1764, HGNC:29602, HGNC:30455, HGNC:3349, HGNC:4035, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:6895, HGNC:8823, HGNC:9459, HGNC:9707 DOI:10.1371/journal.pone.0094781|DOI:10.1369/jhc.4A6514.2005|NoDOI|ParkSM,AngelCE,McIntoshJD,MansellC,ChenCJ,CebonJ,DunbarPR|Mappingthedistinctivepopulationsoflymphaticendothelialcellsindifferentzonesofhumanlymphnodes|PLoSOne|2014Apr14;94:e94781|doi:10|1371/journal|pone|0094781|Erratumin:PLoSOne|2014;98:e106814|Mansell,ClaudiaM[correctedtoMansell,ClaudiaJ]|PMID:24733110;PMCID:PMC3986404||PusztaszeriMP,SeelentagW,BosmanFT|ImmunohistochemicalexpressionofendothelialmarkersCD31,CD34,vonWillebrandfactor,andFli-1innormalhumantissues|JHistochemCytochem|2006Apr;544:385-95|doi:10|1369/jhc|4A6514|2005|Epub2005Oct18|PMID:16234507| Lymph_node +UBERON:8410042 arteriole of lymph node Arteriole CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1662, HGNC:1689, HGNC:1697, HGNC:17474, HGNC:1764, HGNC:29602, HGNC:30455, HGNC:3349, HGNC:4035, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:6895, HGNC:8823, HGNC:9459, HGNC:9707 DOI:10.1371/journal.pone.0094781|DOI:10.1369/jhc.4A6514.2005|NoDOI|ParkSM,AngelCE,McIntoshJD,MansellC,ChenCJ,CebonJ,DunbarPR|Mappingthedistinctivepopulationsoflymphaticendothelialcellsindifferentzonesofhumanlymphnodes|PLoSOne|2014Apr14;94:e94781|doi:10|1371/journal|pone|0094781|Erratumin:PLoSOne|2014;98:e106814|Mansell,ClaudiaM[correctedtoMansell,ClaudiaJ]|PMID:24733110;PMCID:PMC3986404||PusztaszeriMP,SeelentagW,BosmanFT|ImmunohistochemicalexpressionofendothelialmarkersCD31,CD34,vonWillebrandfactor,andFli-1innormalhumantissues|JHistochemCytochem|2006Apr;544:385-95|doi:10|1369/jhc|4A6514|2005|Epub2005Oct18|PMID:16234507| Lymph_node +UBERON:8410033 lymph node vein Hilar Vein CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1662, HGNC:1689, HGNC:1697, HGNC:17474, HGNC:1764, HGNC:29602, HGNC:30455, HGNC:3349, HGNC:4035, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:5344, HGNC:6895, HGNC:8823, HGNC:9459, HGNC:9707 DOI:10.1007/s00441-008-0706-5|delaPazNG,D'AmorePA|Arterialversusvenousendothelialcells|CellTissueRes|2009Jan;3351:5-16|doi:10|1007/s00441-008-0706-5|Epub2008Oct30|PMID:18972135;PMCID:PMC4105978| Lymph_node +UBERON:8410042 arteriole of lymph node Arteriole CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1662, HGNC:1697, HGNC:17474, HGNC:30455, HGNC:4035, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:6895, HGNC:8823, HGNC:9707 DOI:10.1369/jhc.4A6514.2005|PusztaszeriMP,SeelentagW,BosmanFT|ImmunohistochemicalexpressionofendothelialmarkersCD31,CD34,vonWillebrandfactor,andFli-1innormalhumantissues|JHistochemCytochem|2006Apr;544:385-95|doi:10|1369/jhc|4A6514|2005|Epub2005Oct18|PMID:16234507| multi_loc +UBERON:8410042 arteriole of lymph node Arteriole CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1662, HGNC:1697, HGNC:17474, HGNC:1764, HGNC:29602, HGNC:30455, HGNC:3349, HGNC:4035, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:6895, HGNC:8823, HGNC:9459, HGNC:9707 DOI:10.1371/journal.pone.0094781|DOI:10.1369/jhc.4A6514.2005|ParkSM,AngelCE,McIntoshJD,MansellC,ChenCJ,CebonJ,DunbarPR|Mappingthedistinctivepopulationsoflymphaticendothelialcellsindifferentzonesofhumanlymphnodes|PLoSOne|2014Apr14;94:e94781|doi:10|1371/journal|pone|0094781|Erratumin:PLoSOne|2014;98:e106814|Mansell,ClaudiaM[correctedtoMansell,ClaudiaJ]|PMID:24733110;PMCID:PMC3986404||PusztaszeriMP,SeelentagW,BosmanFT|ImmunohistochemicalexpressionofendothelialmarkersCD31,CD34,vonWillebrandfactor,andFli-1innormalhumantissues|JHistochemCytochem|2006Apr;544:385-95|doi:10|1369/jhc|4A6514|2005|Epub2005Oct18|PMID:16234507| multi_loc +UBERON:0004027 chorionic plate chorionic plate CL:0000071 blood vessel endothelial cell vascular endothelial cells HGNC:12726, HGNC:6934, HGNC:8823 PMID:8804361|doi:10.1155/2021/6662201|doi:10.1093/humrep/dem265|doi:10.1290/1071-2690(2001)037<0408:IOECFH>2.0.CO;2|DOI:10.1093/oxfordjournals.humrep.a136040|doi.org/10.1371/journal.pone.0169849|doi.org/10.1371/journal.pone.0169849|PMID:8804361 Placenta +UBERON:0009687 middle cardiac vein middle cardiac vein CL:0000071 blood vessel endothelial cell smooth muscle cell HGNC:11553, HGNC:130, HGNC:7569 Heart +UBERON:0002049 vasculature vasculature CL:0000071 blood vessel endothelial cell endothelial cell HGNC:12726, HGNC:1764, HGNC:8823 Heart +UBERON:0002348 epicardium Epicardium CL:0000071 blood vessel endothelial cell endothelial cell HGNC:12726, HGNC:1764, HGNC:8823 Heart +UBERON:0002094 interventricular septum septum CL:0000071 blood vessel endothelial cell smooth muscle cell HGNC:11553, HGNC:130, HGNC:7569 Heart +UBERON:0006958 great cardiac vein great cardiac vein CL:0000071 blood vessel endothelial cell smooth muscle cell HGNC:11553, HGNC:130, HGNC:7569 Heart +UBERON:0002137 Aortic valve Aortic valve CL:0000071 blood vessel endothelial cell endothelial cell HGNC:12726, HGNC:1764, HGNC:8823 Heart +UBERON:0004058 biliary ductule bile duct/ule CL:0000075 columnar/cuboidal epithelial cell columnar cell ( larger cholangiocytes are more columnar) has ciliae HGNC:1884 DOI:10.3748/wjg.v12.i22.3523 Liver +UBERON:0002348 epicardium Epicardium CL:0000077 mesothelial cell mesothelial cell HGNC:11027, HGNC:11029, HGNC:12796, HGNC:1455 Heart +UBERON:0000017 exocrine pancreas Exocrine pancreas CL:0000084 T cell T lymphocyte HGNC:1674, HGNC:1678, HGNC:1706, HGNC:9666 Pancreas +UBERON:0009745 lymph node medullary cord Medullary Cord CL:0000084 T Cell T Cell HGNC:1673, HGNC:1675, HGNC:1678, HGNC:1678, HGNC:1706 NoDOI Lymph_node +UBERON:0005215 kidney interstitium Interstitium CL:0000084 T cell T Cell HGNC:11935, HGNC:1673, HGNC:1675, HGNC:1677, HGNC:16892 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41586-020-2941-1|DOI:10.1172/jci.insight.133267|DOI:10.1126/science.aat5031|PMID:31249312|PMCID:PMC6597610 Kidney +UBERON:0002371 Bone marrow Bone marrow CL:0000084 T cell T lymphocytes HGNC:10632, HGNC:12276, HGNC:1633, HGNC:1674, HGNC:16830, HGNC:1706, HGNC:3068, HGNC:3619, HGNC:4710, HGNC:4711, HGNC:6380, HGNC:7315, HGNC:7656 Bone-Marrow +UBERON:0000955 brain brain CL:0000084 T cell T cell HGNC:1639, HGNC:21569 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000006 islet of Langerhans Islet of Langerhans CL:0000084 T cell T lymphocyte HGNC:1674, HGNC:1678, HGNC:1706, HGNC:9666 Pancreas +UBERON:0001281 hepatic sinusoid hepatic sinusoid CL:0000091 Kupffer Cell Kupffer cell HGNC:1693, HGNC:1693 DOI:10.1016/j.jhep.2010.04.037 Liver +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/lamina propria CL:0000096 mature neutrophil neutrophil (normally intravascular only) HGNC:3619, HGNC:3619, HGNC:4015, HGNC:4015 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 Large_intestine +UBERON:0002072 hypodermis Subcutaneous CL:0000097 mast cell Mast cell HGNC:1604, HGNC:3358, HGNC:6342 DOI:10.1016/S1081-1206(10)62853-0|DOI:10.1111/imr.12639.||DOI:10.1159/000053694|PMID:10582733||PMID:29431209||PMID:7682764|PMID:11306952 Skin +UBERON:0002371 Bone marrow Bone marrow CL:0000097 mast cell mast cell HGNC:12019, HGNC:17890, HGNC:2014, HGNC:2298, HGNC:3609, HGNC:4171, HGNC:4855, HGNC:6017, HGNC:6017, HGNC:6024, HGNC:6342, HGNC:7317 Bone-Marrow +UBERON:8410075 lymph node paracortical cord Paracortical Cord CL:0000097 mast cell Mast Cell HGNC:12019, HGNC:12019, HGNC:14120, HGNC:6342, HGNC:6342, HGNC:7316 DOI:10.1016/j.iac.2014.01.005|DOI:10.1016/j.beha.2010.07.003.|DOI:10.3389/fimmu.2020.01234|HornyHP,SotlarK,ValentP|Mastocytosis:immunophenotypicalfeaturesofthetransformedmastcellsareuniqueamonghematopoieticcells|ImmunolAllergyClinNorthAm|2014May;342:315-21|doi:10|1016/j|iac|2014|01|005|PMID:24745676;PMCID:PMC5798580||ValentP,Cerny-ReitererS,HerrmannH,MirkinaI,GeorgeTI,SotlarK,SperrWR,HornyHP|Phenotypicheterogeneity,noveldiagnosticmarkers,andtargetexpressionprofilesinnormalandneoplastichumanmastcells|BestPractResClinHaematol|2010Sep;233:369-78|doi:10|1016/j|beha|2010|07|003|Epub2010Aug12|PMID:21112036||PalS,NathS,MeiningerCJ,GashevAA|EmergingRolesofMastCellsintheRegulationofLymphaticImmuno-Physiology|FrontImmunol|2020Jun17;11:1234|doi:10|3389/fimmu|2020|01234|PMID:32625213;PMCID:PMC7311670| Lymph_node +UBERON:0009745 lymph node medullary cord Medullary Cord CL:0000097 mast cell Mast Cell HGNC:12019, HGNC:12019, HGNC:14120, HGNC:6342, HGNC:6342, HGNC:7316 DOI:10.1016/j.iac.2014.01.005|DOI:10.1016/j.beha.2010.07.003.|DOI:10.3389/fimmu.2020.01234|HornyHP,SotlarK,ValentP|Mastocytosis:immunophenotypicalfeaturesofthetransformedmastcellsareuniqueamonghematopoieticcells|ImmunolAllergyClinNorthAm|2014May;342:315-21|doi:10|1016/j|iac|2014|01|005|PMID:24745676;PMCID:PMC5798580||ValentP,Cerny-ReitererS,HerrmannH,MirkinaI,GeorgeTI,SotlarK,SperrWR,HornyHP|Phenotypicheterogeneity,noveldiagnosticmarkers,andtargetexpressionprofilesinnormalandneoplastichumanmastcells|BestPractResClinHaematol|2010Sep;233:369-78|doi:10|1016/j|beha|2010|07|003|Epub2010Aug12|PMID:21112036||PalS,NathS,MeiningerCJ,GashevAA|EmergingRolesofMastCellsintheRegulationofLymphaticImmuno-Physiology|FrontImmunol|2020Jun17;11:1234|doi:10|3389/fimmu|2020|01234|PMID:32625213;PMCID:PMC7311670| Lymph_node +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/lamina propria CL:0000097 mast cell mast cell HGNC:10922, HGNC:10922, HGNC:6342, HGNC:6342 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 Large_intestine +UBERON:0005215 kidney interstitium Interstitium CL:0000097 mast cell Mast cell HGNC:2298, HGNC:6342, HGNC:7316 DOI:10.1101/2021.07.28.454201|DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41586-020-2941-1|DOI:10.1172/jci.insight.133267 Kidney +UBERON:0002067 dermis Dermis CL:0000097 mast cell Mast cell HGNC:1604, HGNC:3358, HGNC:6342 DOI:10.1016/S1081-1206(10)62853-0|DOI:10.1111/imr.12639|NoDOI|DOI:10.1159/000053694.|PMID:10582733||PMID:29431209||PMID:7682764|PMID:11306952 Skin +UBERON:0001961 mucosa-associated lymphoid tissue dermal skin-associated lymphoid tissue CL:0000097 mast cell mast cell HGNC:10922, HGNC:10922, HGNC:6342, HGNC:6342 NoDOI Large_intestine +UBERON:0004791 thymus trabecula thymus trabecula CL:0000097 mast cell mast cell HGNC:11925, HGNC:12019, HGNC:14120, HGNC:17890, HGNC:21041, HGNC:2298, HGNC:248, HGNC:4171, HGNC:5998, HGNC:6644 DOI:10.1097/00000478-199003000-00010|DOI:10.1126/science.aay3224 Thymus +UBERON:0035549 vasculature of integument Blood vessels CL:0000115 endothelial cell Endothelial cell HGNC:3446, HGNC:8823 DOI:10.1111/1523-1747.ep12512516|DOI:10.1152/ajpcell.00524.2001|DOI:10.1016/j.vph.2016.05.003|PMID:778283|PMID:11940533||PMID:27208692 Skin +UBERON:0001986 endothelium Endothelium (non glomerular) CL:0000115 endothelial cell Endothelial Cell HGNC:16041, HGNC:3763, HGNC:8823, HGNC:8823 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|PMID:31249312|PMCID:PMC6597610 Kidney +UBERON:0000955 brain brain CL:0000127 astrocyte astrocyte HGNC:3180, HGNC:43436, HGNC:5318, HGNC:613 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000127 astrocyte astrocyte HGNC:42700, HGNC:4453, HGNC:5318 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000127 astrocyte astrocyte HGNC:44915, HGNC:5318, HGNC:613 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000127 astrocyte astrocyte HGNC:4235, HGNC:633 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000127 astrocyte astrocyte HGNC:2389, HGNC:4235 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000127 astrocyte astrocyte HGNC:2389, HGNC:4235 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000127 astrocyte astrocyte HGNC:3180, HGNC:43436, HGNC:5318, HGNC:613 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000127 astrocyte astrocyte HGNC:42700, HGNC:4453, HGNC:5318 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000127 astrocyte astrocyte HGNC:44915, HGNC:5318, HGNC:613 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000127 astrocyte astrocyte HGNC:4235, HGNC:633 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000127 astrocyte astrocyte HGNC:18374, HGNC:19719, HGNC:27363, HGNC:42700 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000127 astrocyte astrocyte HGNC:18374, HGNC:19719, HGNC:27363, HGNC:42700 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000128 oligodendrocyte oligodendrocyte HGNC:20707 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000128 oligodendrocyte oligodendrocyte HGNC:20707, HGNC:51662, HGNC:9086 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000128 oligodendrocyte oligodendrocyte HGNC:10044, HGNC:20675, HGNC:51662 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000128 oligodendrocyte oligodendrocyte HGNC:20707, HGNC:3432, HGNC:9086 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000128 oligodendrocyte oligodendrocyte HGNC:11740, HGNC:14082, HGNC:23091, HGNC:29268, HGNC:7189 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:0000128 oligodendrocyte oligodendrocyte HGNC:23091, HGNC:43959 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000128 oligodendrocyte oligodendrocyte HGNC:20707, HGNC:23091, HGNC:23723, HGNC:7189 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000128 oligodendrocyte oligodendrocyte HGNC:11740, HGNC:23091, HGNC:2389, HGNC:29268 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000128 oligodendrocyte oligodendrocyte HGNC:11740, HGNC:14082, HGNC:23091, HGNC:29268, HGNC:7189 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000128 oligodendrocyte oligodendrocyte HGNC:20707, HGNC:23091, HGNC:23723, HGNC:7189 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000128 oligodendrocyte oligodendrocyte HGNC:11740, HGNC:23091, HGNC:2389, HGNC:29268 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000128 oligodendrocyte oligodendrocyte HGNC:20707, HGNC:51662, HGNC:9086 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000128 oligodendrocyte oligodendrocyte HGNC:10044, HGNC:20675, HGNC:51662 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000128 oligodendrocyte oligodendrocyte HGNC:20707, HGNC:3432, HGNC:9086 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:2558, HGNC:28416, HGNC:50913 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:2558, HGNC:54229, HGNC:8133 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:2558, HGNC:352, HGNC:54229 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:18124, HGNC:19191, HGNC:50913 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:18124, HGNC:54124, HGNC:54229 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:3531, HGNC:7228 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:21695, HGNC:38712, HGNC:6152 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:54284, HGNC:9361 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:2558, HGNC:352, HGNC:54229 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:21695, HGNC:38712, HGNC:6152 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:18124, HGNC:19191, HGNC:50913 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:12405, HGNC:17379 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000966 retina retina CL:0000129 microglial cell microglial cell HGNC:352 Eye +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:54284, HGNC:9361 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:2558, HGNC:28416, HGNC:50913 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:18124, HGNC:54124, HGNC:54229 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:3531, HGNC:7228 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:12405, HGNC:17379 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:2558, HGNC:54229, HGNC:8133 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001985 corneal endothelium corneal endothelium CL:0000132 corneal endothelial cell corneal endothelial cell HGNC:1759 DOI:10.1038/srep29047 Eye +UBERON:0006566 left ventricle myocardium myocardium CL:0000136 fat cell adipocyte HGNC:24865, HGNC:3594, HGNC:6553 Heart +UBERON:0003331 submucosa of colon submucosa CL:0000136 fat cell adipocyte HGNC:1050, HGNC:1050 NoDOI Large_intestine +UBERON:0005742 adventitia adventitia CL:0000136 fat cell adipocyte HGNC:1050, HGNC:1050 NoDOI Large_intestine +UBERON:0003329 submucosa of anal canal submucosa CL:0000136 fat cell adipocyte HGNC:1050, HGNC:1050 NoDOI Large_intestine +UBERON:0002384 connective tissue fibroconnective tissue CL:0000136 fat cell adipocyte HGNC:1050, HGNC:1050 NoDOI Large_intestine +UBERON:0004927 submucosa of cecum submucosa CL:0000136 fat cell adipocyte HGNC:1050, HGNC:1050 NoDOI Large_intestine +UBERON:0012375 subserosa subserosa CL:0000136 fat cell adipocyte HGNC:1050, HGNC:1050 NoDOI Large_intestine +UBERON:0002352 atrioventricular node atrioventricular node CL:0000136 fat cell adipocyte HGNC:24865, HGNC:3594, HGNC:6553 Heart +UBERON:0018234 stroma of pancreas Stroma of pancreas CL:0000136 fat cell Adipocyte HGNC:3559, HGNC:6621, HGNC:9155 Pancreas +UBERON:0009980 condyle of femur Distal Femur CL:0000137 osteocyte osteocyte HGNC:2197, HGNC:2932 Knee +UBERON:0012271 major duodenal papilla Major duodenal papilla CL:0000146 simple columnar epithelial cell Simple columnar epithelial cell HGNC:1884, HGNC:6107, HGNC:6436, HGNC:6445 Pancreas +UBERON:0004760 gland of anal canal anal gland CL:0000146 simple columnar epithelial cell columnar HGNC:6445, HGNC:6445 NoDOI Large_intestine +UBERON:0012271 major duodenal papilla Major duodenal papilla CL:0000146 simple columnar epithelial cell Simple columnar epithelial cell HGNC:6107, HGNC:6436 Pancreas +UBERON:0012271 major duodenal papilla Major duodenal papilla CL:0000146 simple columnar epithelial cell Simple columnar epithelial cell HGNC:6107, HGNC:6436 multi_loc +UBERON:0012271 major duodenal papilla Major duodenal papilla CL:0000146 simple columnar epithelial cell Simple columnar epithelial cell HGNC:1884, HGNC:6107, HGNC:6436, HGNC:6445 multi_loc +UBERON:0001003 skin epidermis epidermis CL:0000148 melanocyte melanocyte HGNC:1050, HGNC:1050 NoDOI Large_intestine +UBERON:0015716 anal canal epithelium epithelium CL:0000148 melanocyte melanocyte HGNC:10500, HGNC:10500, HGNC:1119, HGNC:11190, HGNC:7124, HGNC:7124 NoDOI Large_intestine +UBERON:0001821 sebaceous gland Sebaceous glands CL:0000151 sebum secreting cell Germinative (epithelial) cell, Sebocyte HGNC:248, HGNC:7508 DOI:10.1016/j.biocel.2009.11.017|DOI:10.4161/derm.1.2.8736|DOI:10.1016/j.bbagen.2013.05.016|PMID:19944183|PMID:20224690|PMID:23688400 Skin +UBERON:0002051 epithelium of bronchiole epithelium of bronchiole CL:0000158 club cell club cell HGNC:11529, HGNC:12523, HGNC:12523, HGNC:1748, HGNC:18391, HGNC:18391, HGNC:20657, HGNC:2632, HGNC:3318, HGNC:4027 Lung +UBERON:0001955 epithelium of respiratory bronchiole epithelium of respiratory bronchiole CL:0000158 club cell club cell HGNC:11529, HGNC:12523, HGNC:12523, HGNC:1748, HGNC:18391, HGNC:18391, HGNC:20657, HGNC:2632, HGNC:3318, HGNC:4027 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 Lung +UBERON:0002341 epithelium of segmental bronchus segmental bronchial epithelium CL:0000158 club cell club cell HGNC:11529, HGNC:12523, HGNC:12523, HGNC:1748, HGNC:18391, HGNC:18391, HGNC:20657, HGNC:2632, HGNC:3318, HGNC:4027 Lung +UBERON:0001958 terminal bronchiole epithelium terminal bronchiole epithelium CL:0000158 club cell club cell HGNC:11529, HGNC:12523, HGNC:12523, HGNC:1748, HGNC:18391, HGNC:18391, HGNC:20657, HGNC:2632, HGNC:3318, HGNC:4027 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 Lung +UBERON:0011184 epithelium of crypt of Lieberkuhn epithelium CL:0000165 neuroendocrine cell neuroendocrine HGNC:11506, HGNC:11506, HGNC:1929, HGNC:1929, HGNC:6088, HGNC:6088, HGNC:6090, HGNC:6090 DOI:10.1159/000501521|PMID:31390635PMCID:PMC6888884 Large_intestine +UBERON:0007177 lamina propria of mucosa of colon lamina propria CL:0000165 neuroendocrine cell neuroendocrine cell HGNC:11506, HGNC:11506, HGNC:1929, HGNC:1929, HGNC:6090, HGNC:6090 DOI:10.1111/j.1440-1827.1989.tb02421.x|DOI:10.1034/j.1600-065x.2003.00072.x|PMID:2618659|PMID:12969318 Large_intestine +UBERON:0011189 lamina propria of large intestine lamina propria CL:0000165 neuroendocrine cell HGNC:11506, HGNC:11506, HGNC:1929, HGNC:1929, HGNC:6090, HGNC:6090 DOI:10.1111/j.1440-1827.1989.tb02421.x|DOI:10.1034/j.1600-065x.2003.00072.x|PMID:2618659|PMID:12969318 Large_intestine +UBERON:0022281 epithelium of crypt of Lieberkuhn of large intestine epithelium CL:0000165 neuroendocrine HGNC:11506, HGNC:11506, HGNC:1929, HGNC:1929, HGNC:6088, HGNC:6088, HGNC:6090, HGNC:6090 DOI:10.1159/000501521|DOI:10.3892/or.2012.2119|PMID:31390635PMCID:PMC6888884|PMID:23128569 Large_intestine +UBERON:0000006 islet of Langerhans Islet of Langerhans CL:0000169 type B pancreatic cell Beta cell HGNC:11506, HGNC:12513, HGNC:1929, HGNC:23145, HGNC:3365, HGNC:6081, HGNC:6107, HGNC:7839 Pancreas +UBERON:0000006 islet of Langerhans Islet of Langerhans CL:0000171 pancreatic A cell Alpha cell HGNC:11506, HGNC:12513, HGNC:14359, HGNC:18060, HGNC:1929, HGNC:4191 Pancreas +UBERON:0000006 islet of Langerhans Islet of Langerhans CL:0000173 pancreatic D cell Delta cell HGNC:11329, HGNC:11506, HGNC:12513, HGNC:1929, HGNC:4901 Pancreas +UBERON:0005452 hepatic cord hepatic plate CL:0000182 hepatocyte hepatocyte HGNC:2625, HGNC:42, HGNC:7154 DOI:10.1097/00000478-200110000-00011|DOI:10.1007/s00424-006-0152-8 Liver +UBERON:0004641 spleen capsule Capsule CL:0000186 myofibroblast cell Myofibroblast HGNC:130, HGNC:1441 NoDOI|NoDOI|Toccanier-PelteMF,SkalliO,KapanciY,GabbianiG|Characterizationofstromalcellswithmyoidfeaturesinlymphnodesandspleeninnormalandpathologicconditions|AmJPathol|1987Oct;129(1):109-18|PMID:3310649;PMCID:PMC1899700| Spleen +UBERON:0007177 lamina propria of mucosa of colon lamina propria CL:0000186 myofibroblast cell myofibroblast HGNC:130, HGNC:130 DOI:10.1111/j.1440-1827.1989.tb02421.x|DOI:10.1034/j.1600-065x.2003.00072.x|PMID:2618659|PMID:12969318 Large_intestine +UBERON:0011189 lamina propria of large intestine lamina propria CL:0000186 myofibroblast cell myofibroblast HGNC:130, HGNC:130 DOI:10.1111/j.1440-1827.1989.tb02421.x|DOI:10.1034/j.1600-065x.2003.00072.x|PMID:2618659|PMID:12969318 Large_intestine +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0000186 myofibroblast cell Myofibroblasts HGNC:130, HGNC:1441 DOI:10.1038/s41598-018-34105-3|NoDOI|NoDOI|Toccanier-PelteMF,SkalliO,KapanciY,GabbianiG|Characterizationofstromalcellswithmyoidfeaturesinlymphnodesandspleeninnormalandpathologicconditions|AmJPathol|1987Oct;129(1):109-18|PMID:3310649;PMCID:PMC1899700| Spleen +UBERON:0002195 trabecula of lymph node Trabeculae CL:0000186 myofibroblast cell Myofibroblast HGNC:12692, HGNC:130, HGNC:130, HGNC:2197, HGNC:2197, HGNC:2201, HGNC:2201, HGNC:2770, HGNC:3327 NoDOI|DOI:10.1002/ar.1091830404|FolseDS,BeathardGA,GranholmNA|Smoothmuscleinlymphnodecapsuleandtrabeculae|AnatRec|1975Dec;1834:517-21|doi:10|1002/ar|1091830404|PMID:1200408| Lymph_node +UBERON:0002194 capsule of lymph node Capsule CL:0000186 myofibroblast cell Myofibroblast HGNC:12692, HGNC:130, HGNC:130, HGNC:2197, HGNC:2197, HGNC:2201, HGNC:2201, HGNC:2770, HGNC:3327 NoDOI|NoDOI|NoDOI|Toccanier-PelteMF,SkalliO,KapanciY,GabbianiG|Characterizationofstromalcellswithmyoidfeaturesinlymphnodesandspleeninnormalandpathologicconditions|AmJPathol|1987Oct;1291:109-18|PMID:3310649;PMCID:PMC1899700| Lymph_node +UBERON:0001265 trabecula of spleen Trabeculae CL:0000186 myofibroblast cell Myofibroblast HGNC:130, HGNC:1441 DOI:10.1038/s41598-018-34105-3|NoDOI|NoDOI|Toccanier-PelteMF,SkalliO,KapanciY,GabbianiG|Characterizationofstromalcellswithmyoidfeaturesinlymphnodesandspleeninnormalandpathologicconditions|AmJPathol|1987Oct;129(1):109-18|PMID:3310649;PMCID:PMC1899700| Spleen +UBERON:0001367 external anal sphincter external anal sphincter CL:0000188 cell of skeletal muscle skeletal muscle HGNC:2770, HGNC:2770 NoDOI Large_intestine +UBERON:0012419 taenia coli tenia coli CL:0000192 smooth muscle cell smooth muscle HGNC:130, HGNC:130 NoDOI Large_intestine +UBERON:0013132 Penicillar Arteriole Penicillar Arteriole CL:0000192 smooth muscle cell Splenic Smooth Muscle Cell HGNC:130 DOI:10.1111/imm.12469 Spleen +UBERON:0005429 dorsal pancreatic duct Papilla of Santorini CL:0000192 smooth muscle cell Smooth muscle cell HGNC:130 Pancreas +UBERON:0004915 sphincter of hepatopancreatic ampulla Hepatopancreatic sphincter (Sphincter of Oddi) CL:0000192 smooth muscle cell Smooth muscle cell HGNC:130 Pancreas +UBERON:0005353 spleen perifollicular zone Perifollicular Zone CL:0000232 erythrocyte Erythrocytes HGNC:4702 DOI:10.1046/j.1365-2567.1997.00328.x|DOI:10.1182/blood.2020005351 Spleen +UBERON:0001266 splenic cord Splenic Cord CL:0000232 erythrocyte Erythrocytes HGNC:4702 DOI:10.1046/j.1365-2567.1997.00328.x|DOI:10.1182/blood.2020005351 Spleen +UBERON:0001266 splenic cord Splenic Cord CL:0000233 platelet Platelet HGNC:4439, HGNC:4444, HGNC:6138, HGNC:8861 DOI:10.1046/j.1537-2995.1985.25385219900.x|DOI:10.1002/cyto.a.20133|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0009744 lymph node medullary sinus Medullary Sinus CL:0000235 macrophage Macrophage HGNC:11127, HGNC:1628, HGNC:1678, HGNC:1693, HGNC:4947, HGNC:6149, HGNC:6152 DOI:10.1182/blood.v97.1.288|DOI:10.1182/blood-2008-06-165266|HartnellA,SteelJ,TurleyH,JonesM,JacksonDG,CrockerPR|Characterizationofhumansialoadhesin,asialicacidbindingreceptorexpressedbyresidentandinflammatorymacrophagepopulations|Blood|2001Jan1;971:288-96|doi:10|1182/blood|v97|1|288|PMID:11133773||AngelCE,ChenCJ,HorlacherOC,WinklerS,JohnT,BrowningJ,MacGregorD,CebonJ,DunbarPR|Distinctivelocalizationofantigen-presentingcellsinhumanlymphnodes|Blood|2009Feb5;1136:1257-67|doi:10|1182/blood-2008-06-165266|Epub2008Nov5|PMID:18987360;PMCID:PMC2687552| Lymph_node +UBERON:0010395 lymph node primary follicle Primary Follicle CL:0000235 macrophage Macrophage HGNC:11127, HGNC:1628, HGNC:1678, HGNC:1693, HGNC:4947, HGNC:6149, HGNC:6152 DOI:10.1111/cas.13137|KomoharaY,OhnishiK,TakeyaM|PossiblefunctionsofCD169-positivesinusmacrophagesinlymphnodesinanti-tumorimmuneresponses|CancerSci|2017Mar;1083:290-295|doi:10|1111/cas|13137|Epub2017Mar7|PMID:28002629;PMCID:PMC5378284| Lymph_node +UBERON:0009745 lymph node medullary cord Medullary Cord CL:0000235 macrophage Macrophage HGNC:1628, HGNC:1628, HGNC:1641, HGNC:1678, HGNC:1693, HGNC:4947, HGNC:6152, HGNC:6895, HGNC:7228 DOI:10.1182/blood-2008-06-165266|AngelCE,ChenCJ,HorlacherOC,WinklerS,JohnT,BrowningJ,MacGregorD,CebonJ,DunbarPR|Distinctivelocalizationofantigen-presentingcellsinhumanlymphnodes|Blood|2009Feb5;1136:1257-67|doi:10|1182/blood-2008-06-165266|Epub2008Nov5|PMID:18987360;PMCID:PMC2687552| Lymph_node +UBERON:0000017 exocrine pancreas Exocrine pancreas CL:0000235 macrophage Macrophage HGNC:1631, HGNC:1693, HGNC:352, HGNC:7228 Pancreas +UBERON:0000006 islet of Langerhans Islet of Langerhans CL:0000235 macrophage Macrophage HGNC:1631, HGNC:1693, HGNC:352, HGNC:7228 Pancreas +UBERON:0001961 mucosa-associated lymphoid tissue dermal skin-associated lymphoid tissue CL:0000235 macrophage macrophage HGNC:1631, HGNC:1631, HGNC:1693, HGNC:1693, HGNC:1697, HGNC:1697, HGNC:6149, HGNC:6149, HGNC:7228, HGNC:7228 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 Large_intestine +UBERON:0002072 hypodermis Subcutaneous CL:0000235 macrophage Macrophage HGNC:1631, HGNC:1693 DOI:10.1038/nri2622|DOI:10.1038/labinvest.2016.116|DOI:10.1038/jid.2010.165|PMID:19763149|PMID:27869795|PMID:20555352 Skin +UBERON:0002067 dermis Dermis CL:0000235 macrophage Macrophage HGNC:1631, HGNC:1693 DOI:10.1038/nri2622|DOI:10.1136/ard.2003.013029|DOI:10.1016/j.actatropica.2016.01.008|PMID:19763149|PMID:15194571|PMID:26827741| Skin +UBERON:0001961 mucosa-associated lymphoid tissue subcutaneous skin-associated lymphoid tissue CL:0000235 macrophage macrophage HGNC:1673, HGNC:1673, HGNC:1678, HGNC:1678 NoDOI Large_intestine +UBERON:8410074 lymph node paracortical sinus Paracortical Sinus CL:0000235 macrophage Macrophage HGNC:11127, HGNC:1628, HGNC:1628, HGNC:1631, HGNC:1641, HGNC:1678, HGNC:1693, HGNC:4947, HGNC:6152, HGNC:7228 DOI:10.1182/blood-2008-06-165266|DOI:10.1097/01.pas.0000157940.80538.ec|DOI:10.1053/j.semdp.2017.11.002|AngelCE,ChenCJ,HorlacherOC,WinklerS,JohnT,BrowningJ,MacGregorD,CebonJ,DunbarPR|Distinctivelocalizationofantigen-presentingcellsinhumanlymphnodes|Blood|2009Feb5;1136:1257-67|doi:10|1182/blood-2008-06-165266|Epub2008Nov5|PMID:18987360;PMCID:PMC2687552||NguyenTT,SchwartzEJ,WestRB,WarnkeRA,ArberDA,NatkunamY|ExpressionofCD163hemoglobinscavengerreceptorinnormaltissues,lymphomas,carcinomas,andsarcomasislargelyrestrictedtothemonocyte/macrophagelineage|AmJSurgPathol|2005May;295:617-24|doi:10|1097/01|pas|0000157940|80538|ec|PMID:15832085||EganC,JaffeES|Non-neoplastichistiocyticanddendriticcelldisordersinlymphnodes|SeminDiagnPathol|2018Jan;351:20-33|doi:10|1053/j|semdp|2017|11|002|Epub2017Nov3|PMID:29150219;PMCID:PMC5803315| Lymph_node +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/Isolated lymphoid follicles (ILF) CL:0000235 macrophage macrophage HGNC:1631, HGNC:1631, HGNC:1693, HGNC:1693, HGNC:1697, HGNC:1697, HGNC:6149, HGNC:6149, HGNC:7228, HGNC:7228 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 Large_intestine +UBERON:0003379 cardiac muscle of right atrium myocardium CL:0000235 macrophage macrophage HGNC:1241, HGNC:1628, HGNC:3793, HGNC:3793 Heart +UBERON:0000006 islet of Langerhans Islet of Langerhans CL:0000235 macrophage Macrophage HGNC:1693, HGNC:352 Pancreas +UBERON:0001961 mucosa-associated lymphoid tissue dermal skin-associated lymphoid tissue CL:0000235 macrophage macrophage HGNC:1631, HGNC:1631, HGNC:1693, HGNC:1693, HGNC:1697, HGNC:1697, HGNC:6149, HGNC:6149, HGNC:7228, HGNC:7228 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 multi_loc +UBERON:0001961 mucosa-associated lymphoid tissue subcutaneous skin-associated lymphoid tissue CL:0000235 macrophage macrophage HGNC:1673, HGNC:1673, HGNC:1678, HGNC:1678 NoDOI multi_loc +UBERON:0000006 islet of Langerhans Islet of Langerhans CL:0000235 macrophage Macrophage HGNC:1693, HGNC:352 multi_loc +UBERON:0006567 right ventricle myocardium myocardium CL:0000235 macrophage macrophage HGNC:1241, HGNC:1628, HGNC:3793, HGNC:3793 Heart +UBERON:0006566 left ventricle myocardium myocardium CL:0000235 macrophage macrophage HGNC:1241, HGNC:1628, HGNC:3793, HGNC:3793 Heart +UBERON:0002348 epicardium Epicardium CL:0000235 macrophage macrophage HGNC:1241, HGNC:1628, HGNC:3793 Heart +UBERON:0000006 islet of Langerhans Islet of Langerhans CL:0000235 macrophage Macrophage HGNC:1631, HGNC:1693, HGNC:352, HGNC:7228 multi_loc +UBERON:0005215 kidney interstitium Interstitium CL:0000236 B cell B cell HGNC:1698, HGNC:4947, HGNC:5713, HGNC:7315 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41586-020-2941-1|DOI:10.1172/jci.insight.133267|DOI:10.1126/science.aat5031|PMID:31249312|PMCID:PMC6597610 Kidney +UBERON:0001961 mucosa-associated lymphoid tissue subcutaneous skin-associated lymphoid tissue CL:0000236 B cell B cell HGNC:4502, HGNC:4502, HGNC:6149, HGNC:6149 NoDOI Large_intestine +UBERON:0001961 mucosa-associated lymphoid tissue dermal skin-associated lymphoid tissue CL:0000236 B cell B cell HGNC:1633, HGNC:1633, HGNC:1698, HGNC:1698 NoDOI Large_intestine +UBERON:0009745 lymph node medullary cord Medullary Cord CL:0000236 B cell B Cell HGNC:1633, HGNC:1633, HGNC:1698, HGNC:4947, HGNC:7315, HGNC:7315 NoDOI Lymph_node +UBERON:8410075 lymph node paracortical cord Paracortical Cord CL:0000236 B cell B Cell HGNC:1633, HGNC:1698, HGNC:4947, HGNC:7315, HGNC:7315 NODOI|DOI:10.1038/s41573-020-00092-2|HsuSM,JaffeES|PhenotypicexpressionofB-lymphocytes|2|Immunoglobulinexpressionofgerminalcentercells|AmJPathol|1984Mar;1143:396-402|PMID:6364822;PMCID:PMC1900414||LeeDSW,RojasOL,GommermanJL|Bcelldepletiontherapiesinautoimmunedisease:advancesandmechanisticinsights|NatRevDrugDiscov|2020Dec15:1–21|doi:10|1038/s41573-020-00092-2|Epubaheadofprint|PMID:33324003;PMCID:PMC7737718| Lymph_node +UBERON:0002337 endometrial stroma endometrial stroma CL:0000236 B cell B cell HGNC:10658, HGNC:1681, HGNC:4947 doi:10.3390/cells1041061|doi:10.1016/j.jcyt.2017.03.001|doi:10.1186/s13287-017-0757-1|DOI:10.1095/biolreprod51.4.739|DOI:10.1095/biolreprod.108.075226|doi.org/10.1182/blood.V74.2.751.751|doi:10.1091/mbc.1.1.27|doi:10.1093/intimm/7.7.1087 Placenta +UBERON:0001961 mucosa-associated lymphoid tissue dermal skin-associated lymphoid tissue CL:0000236 B cell B cell HGNC:1633, HGNC:1633, HGNC:1698, HGNC:1698 NoDOI multi_loc +UBERON:0000017 exocrine pancreas Exocrine pancreas CL:0000236 B cell B lymphocyte HGNC:1633, HGNC:7315, HGNC:9666 Pancreas +UBERON:0001961 mucosa-associated lymphoid tissue subcutaneous skin-associated lymphoid tissue CL:0000236 B cell B cell HGNC:4502, HGNC:4502, HGNC:6149, HGNC:6149 NoDOI multi_loc +UBERON:0002405 immune system immune system of respiratory tract CL:0000236 B cell B cell HGNC:1633, HGNC:1633, HGNC:1643, HGNC:1686, HGNC:1698, HGNC:18233, HGNC:18233, HGNC:2252, HGNC:7315, HGNC:7315, HGNC:7315, HGNC:9666, HGNC:9666 Lung +UBERON:0000006 islet of Langerhans Islet of Langerhans CL:0000236 B cell B lymphocyte HGNC:1633, HGNC:7315, HGNC:9666 Pancreas +UBERON:0002067 dermis Dermis CL:0000236 B cell B cell HGNC:1633, HGNC:1698, HGNC:7315 DOI:10.4049/jimmunol.1801211|PMID:30833422 Skin +UBERON:0002072 hypodermis Subcutaneous CL:0000236 B cell B cell HGNC:1633, HGNC:1698, HGNC:7315 DOI:10.4049/jimmunol.1801211|DOI:10.4049/jimmunol.1801211|DOI:10.4049/jimmunol.1801211|PMID:30833422|PMID:30833422|PMID:30833422 Skin +UBERON:0000955 brain brain CL:0000236 B cell B cell HGNC:7315 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0015716 anal canal epithelium epithelium CL:0000240 stratified squamous epithelial cell squamous HGNC:1911, HGNC:1911, HGNC:23600, HGNC:6445 NoDOI Large_intestine +UBERON:0004058 biliary ductule bile duct/ule CL:0000241 stratified cuboidal epithelial cell cuboidal cell (Small cholangiocytes are cuboidal) HGNC:6436, HGNC:6436, HGNC:6445, HGNC:6445 DOI:10.1111/j.1365-2559.2009.03391.x Liver +UBERON:0001003 skin epidermis epidermis CL:0000242 Merkel cell Merkel HGNC:20412, HGNC:20412 NoDOI Large_intestine +UBERON:0015716 anal canal epithelium epithelium CL:0000242 Merkel cell Merkel HGNC:11506, HGNC:11506, HGNC:1929, HGNC:1929, HGNC:20412, HGNC:20412 NoDOI Large_intestine +UBERON:0002026 stratum spinosum of epidermis Stratum spinosum (SS) CL:0000242 Merkel cell Merkel cell HGNC:11506, HGNC:20412 DOI:10.4103/0973-029X.125208|DOI:10.1159/000248491|DOI:10.1111/1523-1747.ep12606183|PMID:24574661|PMID:3141225 Skin +UBERON:0002025 stratum basale of epidermis Stratum basale (SB) CL:0000242 Merkel cell Merkel cell HGNC:11506, HGNC:1929, HGNC:20412 DOI:10.4103/0973-029X.125208|DOI:10.1111/1523-1747.ep12606183|DOI:10.1111/1523-1747.ep12319788|DOI:10.1083/jcb.200603161|PMID:24574661|PMID:2677156|PMID:16831889 Skin +UBERON:0015716 anal canal epithelium epithelium CL:0000244 transitional HGNC:6436, HGNC:6436, HGNC:6445, HGNC:6445 NoDOI Large_intestine +UBERON:0004760 gland of anal canal anal gland CL:0000244 transitional HGNC:6436, HGNC:6436, HGNC:6445, HGNC:6445 NoDOI Large_intestine +UBERON:0002069 stratum granulosum of epidermis Stratum granulosum (SG) CL:0000312 keratinocyte Keratinocyte (Granular) HGNC:11998, HGNC:2718, HGNC:6413, HGNC:7107 DOI:10.1146/annurev.cb.11.110195.001011|DOI:10.1083/jcb.200603161|DOI:10.1083/jcb.200603161|PMID:8689554||PMID:16831889|PMID:16831889 Skin +UBERON:0002073 hair follicle hair follicle CL:0000312 keratinocyte keratinocyte HGNC:23600, HGNC:23600 NoDOI Large_intestine +UBERON:0001003 skin epidermis epidermis CL:0000312 keratinocyte keratinocyte HGNC:23600, HGNC:23600 NoDOI Large_intestine +UBERON:0001821 sebaceous gland sebaceous gland CL:0000317 sebum secreting cell sebocyte HGNC:6445, HGNC:6445 NoDOI Large_intestine +UBERON:0004184 prostate gland stroma prostate stroma CL:0000359 vascular associated smooth muscle cell vascular smooth muscle HGNC:130, HGNC:1663, HGNC:6934 doi:10.1002/path.5751 Prostate +UBERON:0001310 umbilical artery umbilical arteries CL:0000359 vascular associated smooth muscle cell vascular smooth muscle cells HGNC:130, HGNC:2770 DOI:10.1016/0014-4800(90)90037-e|DOI:10.1007/s00441-003-0745-x|doi:10.1038/ng.2007.6.|DOI:10.1007/s00441-003-0745-x Placenta +UBERON:0004027 chorionic plate chorionic plate CL:0000359 vascular associated smooth muscle cell vascular smooth muscle cells HGNC:130, HGNC:2770 DOI:10.1016/0014-4800(90)90037-e|DOI:10.1007/s00441-003-0745-x|doi:10.1038/ng.2007.6.|DOI:10.1007/s00441-003-0745-x Placenta +UBERON:0007106 chorionic villus chorionic villous CL:0000359 vascular associated smooth muscle cell vascular smooth muscle cells HGNC:130, HGNC:2770 DOI:10.1016/0014-4800(90)90037-e|DOI:10.1007/s00441-003-0745-x|doi:10.1038/ng.2007.6.|DOI:10.1007/s00441-003-0745-x Placenta +UBERON:0002348 epicardium Epicardium CL:0000359 vascular associated smooth muscle cell smooth muscle cell HGNC:11553, HGNC:130, HGNC:7569 Heart +UBERON:0002049 vasculature vasculature CL:0000359 vascular associated smooth muscle cell smooth muscle cell HGNC:11553, HGNC:130, HGNC:7569 Heart +UBERON:0005438 coronary sinus coronary sinus CL:0000359 vascular associated smooth muscle cell smooth muscle cell HGNC:11553, HGNC:130, HGNC:7569 Heart +UBERON:0002066 umbilical vein umbilical vein CL:0000359 vascular associated smooth muscle cell vascular smooth muscle cells HGNC:130, HGNC:2770 DOI:10.1016/0014-4800(90)90037-e|DOI:10.1007/s00441-003-0745-x|doi:10.1038/ng.2007.6.|DOI:10.1007/s00441-003-0745-x Placenta +UBERON:0002072 hypodermis Subcutaneous CL:0000359 smooth muscle cell Perivascular smooth muscle cell HGNC:130, HGNC:1441, HGNC:2155 DOI:10.1002/biot.201200199|NoDOI|NoDOI|PMID:23554249|PMID:8006064| Skin +UBERON:0002067 dermis Dermis CL:0000359 smooth muscle cell Perivascular smooth muscle cell HGNC:130, HGNC:1441, HGNC:2155 DOI:10.1002/biot.201200199|DOI:10.1083/jcb.113.1.147|NoDOI|PMID:23554249|PMID:2007619|PMID:8006064| Skin +UBERON:0000055 vessel vessel CL:0000359 vascular associated smooth muscle cell perivascular smooth muscle cell HGNC:130, HGNC:130 NoDOI Large_intestine +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000402 CNS interneuron CNS interneuron HGNC:10640, HGNC:10776, HGNC:1373, HGNC:30620 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002600 limbic lobe limbic lobe CL:0000402 CNS interneuron CNS interneuron HGNC:11526, HGNC:19179, HGNC:19898, HGNC:3522 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:0000402 CNS interneuron CNS interneuron HGNC:19898, HGNC:2731, HGNC:7029 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000402 CNS interneuron CNS interneuron HGNC:16213, HGNC:16938, HGNC:19898 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:0000402 CNS interneuron CNS interneuron HGNC:11517, HGNC:22950, HGNC:42435, HGNC:676, HGNC:7872 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000402 CNS interneuron CNS interneuron HGNC:10776, HGNC:16097, HGNC:25396, HGNC:30620 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000402 CNS interneuron CNS interneuron HGNC:9607 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000402 CNS interneuron CNS interneuron HGNC:19898, HGNC:3604, HGNC:6694 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000402 CNS interneuron CNS interneuron HGNC:3604, HGNC:40401 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000402 CNS interneuron CNS interneuron HGNC:2192, HGNC:2355 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000402 CNS interneuron CNS interneuron HGNC:10776, HGNC:13841 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000402 CNS interneuron CNS interneuron HGNC:12568, HGNC:24182, HGNC:4587 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000402 CNS interneuron CNS interneuron HGNC:10776, HGNC:13841 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:0000402 CNS interneuron CNS interneuron HGNC:19898, HGNC:2731, HGNC:7029 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000402 CNS interneuron CNS interneuron HGNC:12568, HGNC:24182, HGNC:4587 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000402 CNS interneuron CNS interneuron HGNC:10640, HGNC:10776, HGNC:1373, HGNC:30620 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000402 CNS interneuron CNS interneuron HGNC:3604, HGNC:40401 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000402 CNS interneuron CNS interneuron HGNC:9607 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000402 CNS interneuron CNS interneuron HGNC:10776, HGNC:16097, HGNC:25396, HGNC:30620 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000402 CNS interneuron CNS interneuron HGNC:2192, HGNC:2355 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:0000402 CNS interneuron CNS interneuron HGNC:11517, HGNC:22950, HGNC:42435, HGNC:676, HGNC:7872 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000402 CNS interneuron CNS interneuron HGNC:16213, HGNC:16938, HGNC:19898 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000423 eccrine sweat gland eccrine sweat gland CL:0000434 eccrine cell eccrine HGNC:6445, HGNC:6445 NoDOI Large_intestine +UBERON:8410052 lymph node germinal center light zone Light Zone CL:0000442 follicular dendritic cell Follicular Dendritic Cell HGNC:10639, HGNC:10639, HGNC:12663, HGNC:12663, HGNC:1697, HGNC:2334, HGNC:2336, HGNC:2336, HGNC:29602, HGNC:3612, HGNC:3612, HGNC:3614, HGNC:3618, HGNC:5344, HGNC:6765, HGNC:7036 DOI:10.1016/j.smim.2007.12.001|DOI:10.1097/PAI.0b013e318183a8e2|DOI:10.1016/j.ajpath.2010.12.039|AllenCD,CysterJG|Folliculardendriticcellnetworksofprimaryfolliclesandgerminalcenters:phenotypeandfunction|SeminImmunol|2008Feb;201:14-25|doi:10|1016/j|smim|2007|12|001|Epub2008Feb7|PMID:18261920;PMCID:PMC236679|MarseeDK,PinkusGS,HornickJL|PodoplaninD2-40isahighlyeffectivemarkeroffolliculardendriticcells|ApplImmunohistochemMolMorphol|2009Mar;172:102-7|doi:10|1097/PAI|0b013e318183a8e2|PMID:18838918||LinkA,HardieDL,FavreS,BritschgiMR,AdamsDH,SixtM,CysterJG,BuckleyCD,LutherSA|AssociationofT-zonereticularnetworksandconduitswithectopiclymphoidtissuesinmiceandhumans|AmJPathol|2011Apr;1784:1662-75|doi:10|1016/j|ajpath|2010|12|039|PMID:21435450;PMCID:PMC3070229| Lymph_node +UBERON:0005196 spleen germinal center Germinal Center CL:0000442 follicular dendritic cell Follicular Dendritic Cell (FDC) HGNC:10639, HGNC:10639, HGNC:11204, HGNC:11784, HGNC:11801, HGNC:130, HGNC:16953, HGNC:17069, HGNC:2235, HGNC:2334, HGNC:2336, HGNC:2336, HGNC:3349, HGNC:3612, HGNC:3618, HGNC:6765, HGNC:6765, HGNC:7036, HGNC:7809, HGNC:9607 DOI:10.1111/imm.12469|DOI:10.1007/s00418-011-0799-x|DOI:10.1038/s41467-019-09728-3 Spleen +UBERON:0001251 Marginal Zone of Spleen Superficial Zone CL:0000442 follicular dendritic cell Follicular Dendritic Cell (FDC) HGNC:10639, HGNC:11204, HGNC:11784, HGNC:11801, HGNC:130, HGNC:16953, HGNC:17069, HGNC:2235, HGNC:2334, HGNC:2336, HGNC:2336, HGNC:3349, HGNC:3618, HGNC:6765, HGNC:6765, HGNC:7036, HGNC:7809, HGNC:9607 DOI:10.1111/imm.12469|DOI:10.1007/s00418-011-0799-x|NoDOI|DOI:10.1038/s41467-019-09728-3 Spleen +UBERON:0004041 spleen primary B follicle Primary Follicle CL:0000442 follicular dendritic cell Follicular Dendritic Cell (FDC) HGNC:10639, HGNC:10639, HGNC:11204, HGNC:11784, HGNC:11801, HGNC:130, HGNC:16953, HGNC:17069, HGNC:2235, HGNC:2334, HGNC:2336, HGNC:2336, HGNC:3349, HGNC:3612, HGNC:3618, HGNC:6765, HGNC:6765, HGNC:7036, HGNC:7809, HGNC:9607 DOI:10.1111/imm.12469|DOI:10.1007/s00418-011-0799-x|DOI:10.1038/s41467-019-09728-3 Spleen +UBERON:0010395 lymph node primary follicle Primary Follicle CL:0000442 follicular dendritic cell Follicular Dendritic Cell HGNC:10639, HGNC:10639, HGNC:12663, HGNC:12663, HGNC:1697, HGNC:2334, HGNC:2336, HGNC:2336, HGNC:29602, HGNC:3614, HGNC:3618, HGNC:5344, HGNC:6765, HGNC:7036 DOI:10.1016/j.smim.2007.12.001|DOI:10.1097/PAI.0b013e318183a8e2|DOI:10.1016/j.ajpath.2010.12.039|AllenCD,CysterJG|Folliculardendriticcellnetworksofprimaryfolliclesandgerminalcenters:phenotypeandfunction|SeminImmunol|2008Feb;201:14-25|doi:10|1016/j|smim|2007|12|001|Epub2008Feb7|PMID:18261920;PMCID:PMC236679|MarseeDK,PinkusGS,HornickJL|PodoplaninD2-40isahighlyeffectivemarkeroffolliculardendriticcells|ApplImmunohistochemMolMorphol|2009Mar;172:102-7|doi:10|1097/PAI|0b013e318183a8e2|PMID:18838918||LinkA,HardieDL,FavreS,BritschgiMR,AdamsDH,SixtM,CysterJG,BuckleyCD,LutherSA|AssociationofT-zonereticularnetworksandconduitswithectopiclymphoidtissuesinmiceandhumans|AmJPathol|2011Apr;1784:1662-75|doi:10|1016/j|ajpath|2010|12|039|PMID:21435450;PMCID:PMC3070229| Lymph_node +UBERON:0000006 islet of Langerhans Islet of Langerhans CL:0000451 dendritic cell Dendritic cell HGNC:6152 Pancreas +UBERON:8410075 lymph node paracortical cord Paracortical Cord CL:0000451 dendritic cell Dendritic Cell HGNC:10489, HGNC:11919, HGNC:11919, HGNC:1697, HGNC:1700, HGNC:1703, HGNC:1703, HGNC:1705, HGNC:4947, HGNC:5344, HGNC:6152 DOI:10.1016/S0002-94401061694-X|DOI:10.1053/j.semdp.2017.11.002|SummersKL,HockBD,McKenzieJL,HartDN|Phenotypiccharacterizationoffivedendriticcellsubsetsinhumantonsils|AmJPathol|2001Jul;1591:285-95|doi:10|1016/S0002-94401061694-X|PMID:11438475;PMCID:PMC1850402||EganC,JaffeES|Non-neoplastichistiocyticanddendriticcelldisordersinlymphnodes|SeminDiagnPathol|2018Jan;351:20-33|doi:10|1053/j|semdp|2017|11|002|Epub2017Nov3|PMID:29150219;PMCID:PMC5803315| Lymph_node +UBERON:8410067 lymph node interfollicular cortex Interfollicular Cortex CL:0000451 dendritic cell Dendritic Cell HGNC:11919, HGNC:11919, HGNC:1697, HGNC:1700, HGNC:1703, HGNC:1703, HGNC:1705, HGNC:4947, HGNC:5344, HGNC:6152, HGNC:6152 DOI:10.1016/S0002-94401061680-X|TakahashiK,KenjiA,NorihiroT,EisakuK,TakashiO,KazuhikoH,TadashiY,TadaatsuA|MorphologicalinteractionsofinterdigitatingdendriticcellswithBandTcellsinhumanmesentericlymphnodes|AmJPathol|2001Jul;1591:131-8|doi:10|1016/S0002-94401061680-X|PMID:11438461;PMCID:PMC1850413| Lymph_node +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/lamina propria CL:0000451 dendritic cell dendritic cell HGNC:1697, HGNC:1697, HGNC:6012, HGNC:6012, HGNC:6152, HGNC:6152 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 Large_intestine +UBERON:0001961 mucosa-associated lymphoid tissue dermal skin-associated lymphoid tissue CL:0000451 dendritic cell dendritic cell HGNC:6147, HGNC:6147, HGNC:6149, HGNC:6149 NoDOI Large_intestine +UBERON:0000017 exocrine pancreas Exocrine pancreas CL:0000451 dendritic cell Dendritic cell HGNC:6152 Pancreas +UBERON:0009745 lymph node medullary cord Medullary Cord CL:0000451 dendritic cell Dendritic Cell HGNC:11919, HGNC:1697, HGNC:1703, HGNC:17635, HGNC:4947, HGNC:6152 DOI:10.1016/S0002-94401061694-X|DOI:10.1053/j.semdp.2017.11.002|SummersKL,HockBD,McKenzieJL,HartDN|Phenotypiccharacterizationoffivedendriticcellsubsetsinhumantonsils|AmJPathol|2001Jul;1591:285-95|doi:10|1016/S0002-94401061694-X|PMID:11438475;PMCID:PMC1850402||EganC,JaffeES|Non-neoplastichistiocyticanddendriticcelldisordersinlymphnodes|SeminDiagnPathol|2018Jan;351:20-33|doi:10|1053/j|semdp|2017|11|002|Epub2017Nov3|PMID:29150219;PMCID:PMC5803315| Lymph_node +UBERON:0015716 anal canal epithelium epithelium CL:0000453 Langerhans cell langerhans cells HGNC:1634, HGNC:1634, HGNC:17935, HGNC:17935 NoDOI Large_intestine +UBERON:0001003 skin epidermis epidermis CL:0000453 Langerhans cell langerhans HGNC:1634, HGNC:1634 NoDOI Large_intestine +UBERON:0002405 immune system immune system of respiratory tract CL:0000484 connective tissue type mast cell connective tissue type mast cell HGNC:10935, HGNC:12019, HGNC:12019, HGNC:2097, HGNC:2097, HGNC:2298, HGNC:2298, HGNC:6342, HGNC:6342, HGNC:7316, HGNC:9666, HGNC:9995 Lung +UBERON:0002405 immune system immune system of respiratory tract CL:0000485 mucosal type mast cell tissue resident mucosal type mast cell HGNC:10935, HGNC:12019, HGNC:12019, HGNC:14120, HGNC:6342, HGNC:6342, HGNC:7316, HGNC:9666, HGNC:9995 Lung +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0000492 CD4-positive helper T cell CD4+ T Cell HGNC:1674, HGNC:1674, HGNC:1678, HGNC:1678, HGNC:1706, HGNC:1706 DOI:10.1126/sciimmunol.aau6085|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0001251 Marginal Zone of Spleen Superficial Zone CL:0000492 CD4-positive helper T cell CD4+ T cell HGNC:1674, HGNC:1674, HGNC:1678, HGNC:1678, HGNC:1706 DOI:10.1111/imm.12469|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0005353 spleen perifollicular zone Perifollicular Zone CL:0000499 stromal cell Stromal Cell HGNC:11127, HGNC:11801, HGNC:3349 DOI:10.1007/s00418-013-1172-z|DOI:10.1111/j.1365-2559.1986.tb02482.x|DOI:10.1111/j.1365-2559.1985.tb02841.x Spleen +UBERON:0013132 Penicillar Arteriole Penicillar Arteriole CL:0000499 stromal cell Splenic Stromal Cell (non-FRC/non-FDC) HGNC:130, HGNC:6446, HGNC:6765, HGNC:7809 DOI:10.1111/imm.12469 Spleen +UBERON:0001251 Marginal Zone of Spleen Superficial Zone CL:0000499 stromal cell Splenic Stromal Cell (non-FRC/non-FDC) HGNC:10639, HGNC:11784, HGNC:11801, HGNC:11926, HGNC:130, HGNC:2334, HGNC:2336, HGNC:29602, HGNC:3349, HGNC:6765, HGNC:7809 DOI:10.1111/imm.12469 Spleen +UBERON:0001266 splenic cord Splenic Cord CL:0000499 stromal cell Splenic Stromal Cell (non-FRC/non-FDC) HGNC:130, HGNC:6765, HGNC:7809 DOI:10.1111/imm.12469 Spleen +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0000499 stromal cell Splenic Stromal Cell (non-FRC/non-FDC) HGNC:130, HGNC:6765, HGNC:7809 DOI:10.1111/imm.12469 Spleen +UBERON:0000006 islet of Langerhans Islet of Langerhans CL:0000509 gastrin secreting cell Gastrin cell HGNC:11506, HGNC:1929, HGNC:4164 Pancreas +UBERON:0000088 trophoblast chorionic ectoderm (from chorion membrane) CL:0000523 mononuclear cytotrophoblast cell cytotrophoblast (CTB) HGNC:15979, HGNC:3236, HGNC:6445 doi.org/10.1016/S0143-4004(05)80438-2|doi.org/10.1016/S0143-4004(05)80438-2|doi:10.1016/j.ajpath.2014.08.006|DOI:10.1016/j.jim.2003.03.001|DOI:10.1053/plac.2000.0559|doi.org/10.1095/biolreprod.106.055244 Placenta +UBERON:0000088 trophoblast chorionic ectoderm (from chorionic plate) CL:0000525 syncytiotrophoblast cell syncytiotrophoblast (STB) HGNC:1886, HGNC:2440, HGNC:3236, HGNC:6445, HGNC:9521 DOI:10.1146/annurev.bi.50.070181.002341|doi:10.1056/NEJM197007232830408|doi:10.1007/BF01628222|DOI:10.1016/j.jim.2003.03.001|DOI:10.1053/plac.2000.0559|doi.org/10.1095/biolreprod.106.055244|doi.org/10.1016/S0143-4004(05)80438-2|doi.org/10.1016/S0143-4004(05)80438-2 Placenta +UBERON:0001279 portal triad portal triad/tract CL:0000526 afferent neuron cell neuron cell HGNC:12716, HGNC:20772 DOI:10.3748/wjg.v12.i22.3523|PMID:21262470 Liver +UBERON:0001896 medulla oblongata medulla oblongata CL:0000540 neuron neuron HGNC:3969, HGNC:5137 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000988 pons pons CL:0000540 neuron neuron HGNC:11051, HGNC:52588, HGNC:7000 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:11521, HGNC:18695, HGNC:4324 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:21591, HGNC:26744, HGNC:8138 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:14217, HGNC:25396 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:0000540 neuron neuron HGNC:10259, HGNC:16973, HGNC:8778 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000988 pons pons CL:0000540 neuron neuron HGNC:19087, HGNC:19090, HGNC:49024 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:4855 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:0000540 neuron neuron HGNC:11602, HGNC:8910 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:7872, HGNC:7955 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:14000, HGNC:25396, HGNC:7603 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:19087, HGNC:4172, HGNC:49642, HGNC:6593 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001896 medulla oblongata medulla oblongata CL:0000540 neuron neuron HGNC:19090, HGNC:26002, HGNC:5114 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:19179, HGNC:30620, HGNC:983 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:18695, HGNC:5997 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:21735, HGNC:3467, HGNC:44222, HGNC:50687 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:21735, HGNC:2594, HGNC:31700, HGNC:7976 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:13010, HGNC:16421, HGNC:9459 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:14005, HGNC:21735, HGNC:227, HGNC:26086 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:14217, HGNC:3467 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0011390 pudendal nerve pudendal nerve CL:0000540 neuron neuron HGNC:3353 Peripheral_nervous_system +UBERON:0001322 sciatic nerve sciatic nerve CL:0000540 neuron neuron HGNC:3353 Peripheral_nervous_system +UBERON:0001780 spinal nerve spinal nerve CL:0000540 neuron neuron HGNC:3353 Peripheral_nervous_system +UBERON:0003725 cervical nerve plexus cervical plexus CL:0000540 neuron neuron HGNC:3353 Peripheral_nervous_system +UBERON:0001814 brachial nerve plexus brachial plexus CL:0000540 neuron neuron HGNC:3353 Peripheral_nervous_system +UBERON:0034987 lumbar nerve plexus lumbar plexus CL:0000540 neuron neuron HGNC:3353 Peripheral_nervous_system +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:21357, HGNC:8138 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:0000540 neuron neuron HGNC:35145 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:21735, HGNC:3666 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:0000540 neuron neuron HGNC:1751, HGNC:18695, HGNC:30620 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0007121 skin nerve field nerve CL:0000540 Neuron Neuron HGNC:12513, HGNC:17888, HGNC:7738 DOI:10.14670/HH-11-610|DOI:10.1212/WNL.0000000000001773|DOI:10.1016/j.pneurobio.2009.10.020|DOI:10.1016/S0065-1281(97)80024-4|PMID:25799052|PMID:26109717|PMID:19879917|PMID:9381913| Skin +UBERON:0001021 nerve nerve CL:0000540 neuron neuron HGNC:3353 Peripheral_nervous_system +UBERON:0001492 radial nerve radial nerve CL:0000540 neuron neuron HGNC:3353 Peripheral_nervous_system +UBERON:0003724 musculocutaneous nerve musculocutaneous nerve CL:0000540 neuron neuron HGNC:3353 Peripheral_nervous_system +UBERON:0001493 axillary nerve axillary nerve CL:0000540 neuron neuron HGNC:3353 Peripheral_nervous_system +UBERON:0008833 great auricular nerve great auricular nerve CL:0000540 neuron neuron HGNC:3353 Peripheral_nervous_system +UBERON:0001884 phrenic nerve phrenic nerve CL:0000540 neuron neuron HGNC:3353 Peripheral_nervous_system +UBERON:0001650 hypoglossal nerve hypoglossal nerve CL:0000540 neuron neuron HGNC:3353 Peripheral_nervous_system +UBERON:0001759 vagus nerve vagus nerve CL:0000540 neuron neuron HGNC:3353 Peripheral_nervous_system +UBERON:0001649 glossopharyngeal nerve glossopharyngeal nerve CL:0000540 neuron neuron HGNC:3353 Peripheral_nervous_system +UBERON:0001648 vestibulocochlear nerve vestibulocochlear nerve CL:0000540 neuron neuron HGNC:3353 Peripheral_nervous_system +UBERON:0001647 facial nerve facial nerve CL:0000540 neuron neuron HGNC:3353 Peripheral_nervous_system +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:16189, HGNC:43906 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:11049 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:8079, HGNC:8651 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:54290 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:11329, HGNC:26683, HGNC:54353 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:0000540 neuron neuron HGNC:30209 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:14025, HGNC:28838 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001896 medulla oblongata medulla oblongata CL:0000540 neuron neuron HGNC:11743, HGNC:25552, HGNC:7001 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:0000540 neuron neuron HGNC:37078, HGNC:9143 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:11050, HGNC:20692 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:10726, HGNC:4172, HGNC:6654 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000988 pons pons CL:0000540 neuron neuron HGNC:14222, HGNC:27405, HGNC:52588 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:894 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:10889, HGNC:25552, HGNC:6132 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0034986 sacral nerve plexus sacral plexus CL:0000540 neuron neuron HGNC:3353 Peripheral_nervous_system +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:19664, HGNC:9218 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0035768 coccygeal nerve plexus coccygeal plexus CL:0000540 neuron neuron HGNC:3353 Peripheral_nervous_system +UBERON:0001785 cranial nerve cranial nerve CL:0000540 neuron neuron HGNC:3353 Peripheral_nervous_system +UBERON:0001579 olfactory nerve olfactory nerve CL:0000540 neuron neuron HGNC:3353 Peripheral_nervous_system +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:10854, HGNC:11641, HGNC:30620, HGNC:6594 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:12695, HGNC:16709, HGNC:23571 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:11641, HGNC:19087, HGNC:2663, HGNC:6352 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:11517, HGNC:11641, HGNC:9446 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:11641, HGNC:19087, HGNC:3126, HGNC:37462 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:17245, HGNC:23631, HGNC:30988 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:1544, HGNC:37078, HGNC:9218 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:11641, HGNC:6593 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:12873, HGNC:6593, HGNC:687 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:11329, HGNC:11641, HGNC:20866 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:19090, HGNC:6653, HGNC:9005 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:19090, HGNC:8619 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:19090, HGNC:3126, HGNC:8518 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:1442, HGNC:2171, HGNC:4392, HGNC:5295, HGNC:7001, HGNC:777 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:0000540 neuron neuron HGNC:11051, HGNC:19087, HGNC:5295, HGNC:8076 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:13733, HGNC:6653, HGNC:9005 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:0000540 neuron neuron HGNC:644, HGNC:6653 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001896 medulla oblongata medulla oblongata CL:0000540 neuron neuron HGNC:11528, HGNC:5114, HGNC:7981 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001896 medulla oblongata medulla oblongata CL:0000540 neuron neuron HGNC:20660, HGNC:5137 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:19087, HGNC:19090, HGNC:4504, HGNC:6551 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000988 pons pons CL:0000540 neuron neuron HGNC:4525, HGNC:52588, HGNC:6481 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:13285, HGNC:2663, HGNC:4172 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:12872, HGNC:21694, HGNC:37462, HGNC:8010 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:6132, HGNC:8138 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001896 medulla oblongata medulla oblongata CL:0000540 neuron neuron HGNC:19087, HGNC:5114, HGNC:8616 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001896 medulla oblongata medulla oblongata CL:0000540 neuron neuron HGNC:10527, HGNC:5137 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:5114, HGNC:6654 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:0000540 neuron neuron HGNC:19087, HGNC:19191 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000988 pons pons CL:0000540 neuron neuron HGNC:11051, HGNC:19090, HGNC:8518 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002600 limbic lobe limbic lobe CL:0000540 neuron neuron HGNC:23392, HGNC:23571, HGNC:25396 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:15581, HGNC:20779 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:21386, HGNC:22950, HGNC:23206, HGNC:9674 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001643 oculomotor nerve oculomotor nerve CL:0000540 neuron neuron HGNC:3353 Peripheral_nervous_system +UBERON:0001644 trochlear nerve trochlear nerve CL:0000540 neuron neuron HGNC:3353 Peripheral_nervous_system +UBERON:0001645 trigeminal nerve trigeminal nerve CL:0000540 neuron neuron HGNC:3353 Peripheral_nervous_system +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:12872, HGNC:8518 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:0000540 neuron neuron HGNC:22788 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:0000540 neuron neuron HGNC:2907, HGNC:6132, HGNC:8518 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000375 mandibular nerve mandibular nerve CL:0000540 neuron neuron HGNC:3353 Peripheral_nervous_system +UBERON:0000377 maxillary nerve maxillary nerve CL:0000540 neuron neuron HGNC:3353 Peripheral_nervous_system +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:5019, HGNC:6132, HGNC:687 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000348 ophthalmic nerve ophthalmic nerve CL:0000540 neuron neuron HGNC:3353 Peripheral_nervous_system +UBERON:0001646 abducens nerve abducens nerve CL:0000540 neuron neuron HGNC:3353 Peripheral_nervous_system +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:14005, HGNC:4392 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:0000540 neuron neuron HGNC:10882, HGNC:8518 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:19090, HGNC:23317, HGNC:44222 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:0000540 neuron neuron HGNC:10882, HGNC:9005 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:0000540 neuron neuron HGNC:6132, HGNC:6551 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002037 cerebellum cerebellum CL:0000540 neuron neuron HGNC:49024, HGNC:53225 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:777 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001896 medulla oblongata medulla oblongata CL:0000540 neuron neuron HGNC:11051, HGNC:12405, HGNC:14632, HGNC:5295 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:11743, HGNC:6653 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:4172, HGNC:5154 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:30748, HGNC:4172, HGNC:50698, HGNC:51231 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:4172, HGNC:50687 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:11743, HGNC:3341, HGNC:6551 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:11743, HGNC:21587, HGNC:4172, HGNC:4579, HGNC:777 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:11743, HGNC:43906, HGNC:6551 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:20779, HGNC:6551, HGNC:8522 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:10889, HGNC:11517, HGNC:4172 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:14222, HGNC:52588, HGNC:8138 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:11743, HGNC:14222 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001896 medulla oblongata medulla oblongata CL:0000540 neuron neuron HGNC:6136, HGNC:6654 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000988 pons pons CL:0000540 neuron neuron HGNC:11051, HGNC:19090, HGNC:8518 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001896 medulla oblongata medulla oblongata CL:0000540 neuron neuron HGNC:19087, HGNC:5114, HGNC:8616 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:12872, HGNC:21694, HGNC:37462, HGNC:8010 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:13285, HGNC:2663, HGNC:4172 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000988 pons pons CL:0000540 neuron neuron HGNC:4525, HGNC:52588, HGNC:6481 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:19087, HGNC:19090, HGNC:4504, HGNC:6551 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001896 medulla oblongata medulla oblongata CL:0000540 neuron neuron HGNC:20660, HGNC:5137 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001896 medulla oblongata medulla oblongata CL:0000540 neuron neuron HGNC:11528, HGNC:5114, HGNC:7981 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001898 hypothalamus hypothalamus CL:0000540 neuron neuron HGNC:644, HGNC:6653 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:13733, HGNC:6653, HGNC:9005 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:0000540 neuron neuron HGNC:11051, HGNC:19087, HGNC:5295, HGNC:8076 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:1442, HGNC:2171, HGNC:4392, HGNC:5295, HGNC:7001, HGNC:777 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:19090, HGNC:3126, HGNC:8518 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001896 medulla oblongata medulla oblongata CL:0000540 neuron neuron HGNC:10527, HGNC:5137 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:19090, HGNC:8619 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001898 hypothalamus hypothalamus CL:0000540 neuron neuron HGNC:11602, HGNC:8910 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:21591, HGNC:26744, HGNC:8138 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:11521, HGNC:18695, HGNC:4324 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000988 pons pons CL:0000540 neuron neuron HGNC:11051, HGNC:52588, HGNC:7000 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001896 medulla oblongata medulla oblongata CL:0000540 neuron neuron HGNC:3969, HGNC:5137 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:19090, HGNC:6653, HGNC:9005 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:11329, HGNC:11641, HGNC:20866 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:12873, HGNC:6593, HGNC:687 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:11641, HGNC:6593 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:1544, HGNC:37078, HGNC:9218 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:17245, HGNC:23631, HGNC:30988 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:11641, HGNC:19087, HGNC:3126, HGNC:37462 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:4855 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:5114, HGNC:6654 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:0000540 neuron neuron HGNC:19087, HGNC:19191 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:15581, HGNC:20779 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:14217, HGNC:25396 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001898 hypothalamus hypothalamus CL:0000540 neuron neuron HGNC:10259, HGNC:16973, HGNC:8778 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000988 pons pons CL:0000540 neuron neuron HGNC:19087, HGNC:19090, HGNC:49024 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001896 medulla oblongata medulla oblongata CL:0000540 neuron neuron HGNC:6136, HGNC:6654 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:11743, HGNC:14222 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:14222, HGNC:52588, HGNC:8138 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:10889, HGNC:11517, HGNC:4172 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:20779, HGNC:6551, HGNC:8522 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:11743, HGNC:43906, HGNC:6551 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:11743, HGNC:21587, HGNC:4172, HGNC:4579, HGNC:777 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:11743, HGNC:3341, HGNC:6551 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:4172, HGNC:50687 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:30748, HGNC:4172, HGNC:50698, HGNC:51231 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:4172, HGNC:5154 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:11743, HGNC:6653 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001896 medulla oblongata medulla oblongata CL:0000540 neuron neuron HGNC:11051, HGNC:12405, HGNC:14632, HGNC:5295 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:777 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001898 hypothalamus hypothalamus CL:0000540 neuron neuron HGNC:6132, HGNC:6551 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001898 hypothalamus hypothalamus CL:0000540 neuron neuron HGNC:10882, HGNC:9005 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:19090, HGNC:23317, HGNC:44222 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001898 hypothalamus hypothalamus CL:0000540 neuron neuron HGNC:10882, HGNC:8518 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:14005, HGNC:4392 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:5019, HGNC:6132, HGNC:687 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001898 hypothalamus hypothalamus CL:0000540 neuron neuron HGNC:2907, HGNC:6132, HGNC:8518 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001898 hypothalamus hypothalamus CL:0000540 neuron neuron HGNC:22788 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:12872, HGNC:8518 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:21386, HGNC:22950, HGNC:23206, HGNC:9674 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:11517, HGNC:11641, HGNC:9446 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:11641, HGNC:19087, HGNC:2663, HGNC:6352 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:6132, HGNC:8138 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:10854, HGNC:11641, HGNC:30620, HGNC:6594 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:16189, HGNC:43906 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001898 hypothalamus hypothalamus CL:0000540 neuron neuron HGNC:1751, HGNC:18695, HGNC:30620 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:21735, HGNC:3666 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:0000540 neuron neuron HGNC:35145 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:21357, HGNC:8138 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:14217, HGNC:3467 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:14005, HGNC:21735, HGNC:227, HGNC:26086 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:11049 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:13010, HGNC:16421, HGNC:9459 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:21735, HGNC:3467, HGNC:44222, HGNC:50687 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:18695, HGNC:5997 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:19179, HGNC:30620, HGNC:983 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001896 medulla oblongata medulla oblongata CL:0000540 neuron neuron HGNC:19090, HGNC:26002, HGNC:5114 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:19087, HGNC:4172, HGNC:49642, HGNC:6593 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:12695, HGNC:16709, HGNC:23571 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:7872, HGNC:7955 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:21735, HGNC:2594, HGNC:31700, HGNC:7976 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:8079, HGNC:8651 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:14000, HGNC:25396, HGNC:7603 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000988 pons pons CL:0000540 neuron neuron HGNC:14222, HGNC:27405, HGNC:52588 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:19664, HGNC:9218 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:10889, HGNC:25552, HGNC:6132 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:894 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:11050, HGNC:20692 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:0000540 neuron neuron HGNC:37078, HGNC:9143 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001896 medulla oblongata medulla oblongata CL:0000540 neuron neuron HGNC:11743, HGNC:25552, HGNC:7001 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:10726, HGNC:4172, HGNC:6654 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:0000540 neuron neuron HGNC:30209 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:11329, HGNC:26683, HGNC:54353 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:54290 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:14025, HGNC:28838 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001961 mucosa-associated lymphoid tissue dermal skin-associated lymphoid tissue CL:0000545 T-helper 1 cell T helper HGNC:1673, HGNC:1673, HGNC:1678, HGNC:1678 NoDOI multi_loc +UBERON:8410067 lymph node interfollicular cortex Interfollicular Cortex CL:0000545 T-helper 1 cell Th1 cell HGNC:11599, HGNC:1605, HGNC:1607, HGNC:1673, HGNC:1675, HGNC:1678, HGNC:1706, HGNC:4540, HGNC:5361, HGNC:6024 DOI:10.4049/jimmunol.1701025|NoDOI|KunickiMA,AmayaHernandezLC,DavisKL,BacchettaR,RoncaroloMG|IdentityandDiversityofHumanPeripheralThandTRegulatoryCellsDefinedbySingle-CellMassCytometry|JImmunol|2018Jan1;2001:336-346|doi:10|4049/jimmunol|1701025|Epub2017Nov27|PMID:29180490| Lymph_node +UBERON:0001961 mucosa-associated lymphoid tissue dermal skin-associated lymphoid tissue CL:0000545 T-helper 1 cell T helper HGNC:1673, HGNC:1673, HGNC:1678, HGNC:1678 NoDOI Large_intestine +UBERON:0001961 mucosa-associated lymphoid tissue subcutaneous skin-associated lymphoid tissue CL:0000545 T-helper 1 cell T helper HGNC:1673, HGNC:1673, HGNC:1706, HGNC:1706 NoDOI Large_intestine +UBERON:0002072 hypodermis Subcutaneous CL:0000545 T-helper 1 cell T helper HGNC:1673, HGNC:1678 DOI:10.1111/1523-1747.ep12470172|DOI:10.1111/1523-1747.ep12470172|DOI:10.1111/1523-1747.ep12470172|PMID:3494791|PMID:3494791|PMID:3494791 Skin +UBERON:8410075 lymph node paracortical cord Paracortical Cord CL:0000545 T-helper 1 cell Th1 cell HGNC:11599, HGNC:1605, HGNC:1607, HGNC:1673, HGNC:1675, HGNC:1678, HGNC:1706, HGNC:4540, HGNC:5361, HGNC:6024 DOI:10.4049/jimmunol.1701025|NoDOI|KunickiMA,AmayaHernandezLC,DavisKL,BacchettaR,RoncaroloMG|IdentityandDiversityofHumanPeripheralThandTRegulatoryCellsDefinedbySingle-CellMassCytometry|JImmunol|2018Jan1;2001:336-346|doi:10|4049/jimmunol|1701025|Epub2017Nov27|PMID:29180490| Lymph_node +UBERON:0002067 dermis Dermis CL:0000545 T-helper 1 cell T helper HGNC:1673, HGNC:1678 DOI:10.1111/1523-1747.ep12470172|DOI:10.1111/1523-1747.ep12470172|DOI:10.1111/1523-1747.ep12470172|PMID:3494791|PMID:3494791|PMID:3494791 Skin +UBERON:0001961 mucosa-associated lymphoid tissue subcutaneous skin-associated lymphoid tissue CL:0000545 T-helper 1 cell T helper HGNC:1673, HGNC:1673, HGNC:1706, HGNC:1706 NoDOI multi_loc +UBERON:8410075 lymph node paracortical cord Paracortical Cord CL:0000546 T-helper 2 cell Th2 cell HGNC:1605, HGNC:1673, HGNC:1675, HGNC:1678, HGNC:1706, HGNC:4172, HGNC:4502, HGNC:4540, HGNC:5361, HGNC:6024 DOI:10.4049/jimmunol.1701025|NoDOI|KunickiMA,AmayaHernandezLC,DavisKL,BacchettaR,RoncaroloMG|IdentityandDiversityofHumanPeripheralThandTRegulatoryCellsDefinedbySingle-CellMassCytometry|JImmunol|2018Jan1;2001:336-346|doi:10|4049/jimmunol|1701025|Epub2017Nov27|PMID:29180490| Lymph_node +UBERON:8410067 lymph node interfollicular cortex Interfollicular Cortex CL:0000546 T-helper 2 cell Th2 cell HGNC:1605, HGNC:1673, HGNC:1675, HGNC:1678, HGNC:1706, HGNC:4172, HGNC:4502, HGNC:4540, HGNC:5361, HGNC:6024 DOI:10.4049/jimmunol.1701025|NoDOI|KunickiMA,AmayaHernandezLC,DavisKL,BacchettaR,RoncaroloMG|IdentityandDiversityofHumanPeripheralThandTRegulatoryCellsDefinedbySingle-CellMassCytometry|JImmunol|2018Jan1;2001:336-346|doi:10|4049/jimmunol|1701025|Epub2017Nov27|PMID:29180490| Lymph_node +UBERON:0002371 Bone marrow Bone marrow CL:0000553 megakaryocyte progenitor cell early Megakaryocyte HGNC:10690, HGNC:2067, HGNC:3609, HGNC:3618, HGNC:4171, HGNC:4439, HGNC:6138, HGNC:6156, HGNC:8861, HGNC:9070 Bone-Marrow +UBERON:0002371 Bone marrow Bone marrow CL:0000556 megakaryocyte Megakaryocyte HGNC:10690, HGNC:18874, HGNC:24356, HGNC:3618, HGNC:4439, HGNC:4444, HGNC:6138, HGNC:6138, HGNC:6156, HGNC:8861, HGNC:8861, HGNC:9240 Bone-Marrow +UBERON:0002371 Bone marrow Bone marrow CL:0000557 granulocyte monocyte progenitor cell granulocyte-macrophage progenitor cell HGNC:10576, HGNC:1455, HGNC:1628, HGNC:1662, HGNC:1662, HGNC:1667, HGNC:1674, HGNC:3619, HGNC:3765, HGNC:6012, HGNC:7218, HGNC:7656, HGNC:913, HGNC:9666 DOI:10.1038/ni.1889 Bone-Marrow +UBERON:0002371 Bone marrow Bone marrow CL:0000559 promonocyte promonocyte HGNC:10494, HGNC:10496, HGNC:1603, HGNC:1603, HGNC:1628, HGNC:1662, HGNC:1667, HGNC:2475, HGNC:2558, HGNC:28874, HGNC:31713, HGNC:3613, HGNC:6012, HGNC:6342, HGNC:7154 Bone-Marrow +UBERON:0001791 inner nuclear layer of retina inner nuclear layer CL:0000561 Amacrine Cell Amacrine Cell HGNC:11056, HGNC:11742, HGNC:11743, HGNC:11744, HGNC:1434, HGNC:16941, HGNC:24181, HGNC:24182, HGNC:4092, HGNC:4092, HGNC:4093 DOI:10.1016/j.cell.2019.01.004|DOI:10.1016/j.preteyeres.2020.100844|DOI:10.1002/cne.23821 Eye +UBERON:0001789 outer nuclear layer of retina outer nuclear layer CL:0000573 retinal cone cell retinal cone cell HGNC:1012, HGNC:1012, HGNC:4206, HGNC:4206, HGNC:4394, HGNC:4400, HGNC:4412, HGNC:4678, HGNC:710, HGNC:710, HGNC:8759, HGNC:8790, HGNC:9936, HGNC:9936, HGNC:9937 DOI:10.1016/j.ophtha.2017.09.016|DOI:10.1016/j.exer.2016.01.002 Eye +UBERON:0001772 corneal epithelium corneal epithelium CL:0000575 corneal epithelial cell corneal epithelial cell HGNC:1748, HGNC:6414, HGNC:6440, HGNC:7756 DOI:10.1634/stemcell.22-3-355 Eye +UBERON:0002371 Bone marrow Bone marrow CL:0000576 monocyte monocyte HGNC:11241, HGNC:1633, HGNC:1662, HGNC:1667, HGNC:1674, HGNC:1834, HGNC:31713, HGNC:3613, HGNC:3765, HGNC:5358, HGNC:6012, HGNC:6348, HGNC:7154, HGNC:7656, HGNC:9666 Bone-Marrow +UBERON:0005215 kidney interstitium Interstitium CL:0000576 monocyte Monocyte HGNC:1241, HGNC:4947, HGNC:6152 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41586-020-2941-1|DOI:10.1126/science.aat5031|PMID:31249312|PMCID:PMC6597610 Kidney +UBERON:0003988 thymus corticomedullary boundary corticomedullary boundary of thymus CL:0000576 monocyte monocyte HGNC:10489, HGNC:10494, HGNC:10496, HGNC:10498, HGNC:10499, HGNC:1804, HGNC:2464, HGNC:2545, HGNC:3623, HGNC:6740 DOI:10.1126/science.aay3224 Thymus +UBERON:0000955 brain brain CL:0000576 monocyte monocyte HGNC:3623 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0014726 intercalated duct of pancreas Intercalated duct CL:0000577 type EC enteroendocrine cell Enterochromaffin cell HGNC:11506, HGNC:12008, HGNC:1929 Pancreas +UBERON:0002405 immune system immune system of respiratory tract CL:0000583 alveolar macrophage alveolar macrophage HGNC:11127, HGNC:11127, HGNC:1631, HGNC:1686, HGNC:1693, HGNC:2252, HGNC:2605, HGNC:3559, HGNC:6895, HGNC:6895, HGNC:7228, HGNC:9236, HGNC:9666, HGNC:9666, HGNC:9666 Lung +UBERON:0001789 outer nuclear layer of retina outer nuclear layer CL:0000604 retinal rod cell retinal rod cell HGNC:10012, HGNC:10012, HGNC:10521, HGNC:4393, HGNC:4411, HGNC:7974, HGNC:8002, HGNC:8759 DOI:10.1016/j.cell.2019.01.004|DOI:10.1016/j.exer.2016.01.002 Eye +UBERON:0002405 immune system immune system of respiratory tract CL:0000623 natural killer cell natural killer cell HGNC:11599, HGNC:1686, HGNC:2252, HGNC:3372, HGNC:6378, HGNC:6731, HGNC:7656, HGNC:7830, HGNC:9666, HGNC:9666 Lung +UBERON:0004647 liver lobule hepatic Lobule CL:0000623 Natural killer Cell NK HGNC:11599, HGNC:16647, HGNC:1694, HGNC:3372, HGNC:6134, HGNC:7656 DOI:10.3389/fimmu.2019.01502|PMID:28289707PMID:27798170 Liver +UBERON:0005215 kidney interstitium Interstitium CL:0000623 natural killer cell Natural Killer Cell HGNC:10473, HGNC:4414, HGNC:4708, HGNC:7830 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41586-020-2941-1|DOI:10.1172/jci.insight.133267|DOI:10.1126/science.aat5031|PMID:31249312|PMCID:PMC6597610 Kidney +UBERON:0001266 splenic cord Splenic Cord CL:0000623 natural killer cell NK Cell HGNC:17013, HGNC:19077, HGNC:3619, HGNC:3619, HGNC:7656, HGNC:7656 DOI:10.4049/jimmunol.172.3.1455|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0000623 natural killer cell NK Cell HGNC:17013, HGNC:19077, HGNC:3619, HGNC:3619, HGNC:7656, HGNC:7656, HGNC:9360 DOI:10.4049/jimmunol.172.3.1455|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0002067 dermis Dermis CL:0000623 natural killer cell Natural killer cell HGNC:1673, HGNC:3619, HGNC:7656 DOI:10.1016/j.jaci.2009.11.020|DOI:10.1016/s1471-4906(01)02060-9|DOI:10.1016/s1471-4906(01)02060-9|DOI:10.1016/s1471-4906(01)02060-9|PMID:20109737|PMID:11698225||PMID:11698225||PMID:11698225| Skin +UBERON:8410067 lymph node interfollicular cortex Interfollicular Cortex CL:0000623 natural killer cell Natural Killer Cell HGNC:11935, HGNC:1674, HGNC:1675, HGNC:18788, HGNC:3619, HGNC:4234, HGNC:5361, HGNC:6024, HGNC:6342, HGNC:6374, HGNC:6378, HGNC:6378, HGNC:6378, HGNC:7656 NoDOI|DOI:10.1038/nri.2016.34|BjörkströmNK,LjunggrenHG,MichaëlssonJ|Emerginginsightsintonaturalkillercellsinhumanperipheraltissues|NatRevImmunol|2016Apr28;165:310-20|doi:10|1038/nri|2016|34|PMID:27121652| Lymph_node +UBERON:8410075 lymph node paracortical cord Paracortical Cord CL:0000623 natural killer cell Natural Killer Cell HGNC:11935, HGNC:1674, HGNC:1675, HGNC:3619, HGNC:4234, HGNC:5361, HGNC:6024, HGNC:6342, HGNC:6378, HGNC:6378, HGNC:6378, HGNC:7656 NoDOI|DOI:10.1038/nri.2016.34|BjörkströmNK,LjunggrenHG,MichaëlssonJ|Emerginginsightsintonaturalkillercellsinhumanperipheraltissues|NatRevImmunol|2016Apr28;165:310-20|doi:10|1038/nri|2016|34|PMID:27121652| Lymph_node +UBERON:0000955 brain brain CL:0000623 natural killer cell NK cell HGNC:4414, HGNC:7830 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002124 medulla of thymus medulla of thymus CL:0000623 natural killer cell natural killer cell HGNC:10646, HGNC:12449, HGNC:13342, HGNC:24961, HGNC:28783, HGNC:4414, HGNC:6373, HGNC:6374, HGNC:6378, HGNC:7830 DOI:10.1126/science.aay3224|DOI:10.4049/jimmunol.166.4.2194 Thymus +UBERON:0004647 liver lobule hepatic Lobule CL:0000624 CD4 positive alpha beta CD4+T cell HGNC:12029, HGNC:1678 Liver +UBERON:0001266 splenic cord Splenic Cord CL:0000625 CD8-positive, alpha-beta T cell CD8+ T Cell HGNC:1674, HGNC:1674, HGNC:1678, HGNC:1678, HGNC:1706, HGNC:1706 NoDOI|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0006729 liver perisinusoidal space Disse's space CL:0000632 hepatic stellate cell quiescent hepatic stellate cell HGNC:2770, HGNC:2770, HGNC:4235, HGNC:4235, HGNC:8804, HGNC:8804 DOI:10.1038/nm.3282|DOI:10.1136/gut.2005.078865|DOI:10.1002/hep.1840040425|https://www|ncbi|nlm|nih|gov/pmc/articles/PMC3855865/ Liver +UBERON:0001791 inner nuclear layer of retina inner nuclear layer CL:0000636 Mueller cell Muller glia HGNC:10024, HGNC:10024, HGNC:10024, HGNC:10941, HGNC:2095, HGNC:2338, HGNC:2418, HGNC:2893, HGNC:4235, HGNC:4341, HGNC:613 NoDOI|DOI:10.1016/j.ophtha.2017.09.016 Eye +UBERON:0002037 cerebellum cerebellum CL:0000644 Bergmann glial cell Bergmann glial cell HGNC:52515, HGNC:6482 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002025 stratum basale of epidermis Stratum basale (SB) CL:0000646 basal cell Keratinocyte (Basal) HGNC:11998, HGNC:2718, HGNC:6416, HGNC:6442, HGNC:7107 DOI:10.1038/nrm3175|DOI:10.1083/jcb.200603161|DOI:10.1083/jcb.200603161|PMID:21860392|PMID:16831889|PMID:16831889 Skin +UBERON:0002303 juxtaglomerular apparatus Juxtaglomerular Apparatus CL:0000648 kidney granular cell Juxtaglomerular granular cell (Renin positive) HGNC:9958 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1073/pnas.2005477117|PMID:31249312|PMCID:PMC6597610 Kidney +UBERON:0002026 stratum spinosum of epidermis Stratum spinosum (SS) CL:0000649 prickle cell Keratinocytes (Spinous) HGNC:6412, HGNC:6413 DOI:10.1038/jid.1952.87|DOI:10.1083/jcb.200603161|DOI:10.1083/jcb.200603161|PMID:12981303||PMID:16831889|PMID:16831889 Skin +UBERON:0005751 glomerular visceral epithelium visceral epithelial layer CL:0000653 podocyte Podocyte HGNC:13394, HGNC:7908, HGNC:9171, HGNC:9679 Kidney +UBERON:0005751 glomerular visceral epithelium visceral epithelial layer CL:0000653 podocyte Podocyte HGNC:13394, HGNC:13517, HGNC:23319, HGNC:7908, HGNC:9171, HGNC:9171, HGNC:9679 DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41586-020-2941-1|DOI:10.1073/pnas.2005477117|PMID:31249312|PMCID:PMC6597610 Kidney +UBERON:0005751 glomerular visceral epithelium visceral epithelial layer CL:0000653 glomerular visceral epithelial cell Podocyte HGNC:13394, HGNC:7908, HGNC:9171, HGNC:9171, HGNC:9679 multi_loc +UBERON:0005751 glomerular visceral epithelium visceral epithelial layer CL:0000653 podocyte Podocyte HGNC:13394, HGNC:13517, HGNC:23319, HGNC:7908, HGNC:9171, HGNC:9171, HGNC:9679 DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41586-020-2941-1|DOI:10.1073/pnas.2005477117|PMID:31249312|PMCID:PMC6597610 multi_loc +UBERON:0005751 glomerular visceral epithelium visceral epithelial layer CL:0000653 glomerular visceral epithelial cell Podocyte HGNC:13394, HGNC:7908, HGNC:9171, HGNC:9171, HGNC:9679 Kidney +UBERON:0005751 glomerular visceral epithelium visceral epithelial layer CL:0000653 podocyte Podocyte HGNC:13394, HGNC:7908, HGNC:9171, HGNC:9679 multi_loc +UBERON:0004927 submucosa of cecum submucosa CL:0000669 pericyte pericyte HGNC:8804, HGNC:8804 NoDOI Large_intestine +UBERON:0012398 large intestine smooth muscle circular layer circular muscle layer CL:0000669 pericyte pericyte HGNC:8804, HGNC:8804 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 Large_intestine +UBERON:0012375 subserosa subserosa CL:0000669 pericyte pericyte HGNC:8804, HGNC:8804 NoDOI Large_intestine +UBERON:0007178 muscularis mucosae of colon muscularis mucosa CL:0000669 pericyte pericyte HGNC:8804, HGNC:8804 NoDOI Large_intestine +UBERON:0011189 lamina propria of large intestine lamina propria CL:0000669 pericyte pericyte HGNC:8804, HGNC:8804 DOI:10.1111/j.1440-1827.1989.tb02421.x|DOI:10.1034/j.1600-065x.2003.00072.x|PMID:2618659|PMID:12969318 Large_intestine +UBERON:0007177 lamina propria of mucosa of colon lamina propria CL:0000669 pericyte pericyte HGNC:8804, HGNC:8804 DOI:10.1111/j.1440-1827.1989.tb02421.x|DOI:10.1034/j.1600-065x.2003.00072.x|PMID:2618659|PMID:12969318 Large_intestine +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/Isolated lymphoid follicles (ILF) CL:0000669 pericyte pericyte HGNC:8804, HGNC:8804 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 Large_intestine +UBERON:0002066 umbilical vein umbilical vein CL:0000669 pericyte pericytes HGNC:130, HGNC:2466, HGNC:2770, HGNC:8804 DOI:10.1016/0014-4800(90)90037-e|DOI:10.1007/s00441-003-0745-x|doi:10.1038/ng.2007.6.|DOI:10.1007/s00441-003-0745-x|DOI:10.1007/s00441-003-0745-x|DOI:10.1007/s00441-003-0745-x Placenta +UBERON:0000055 vessel vessel CL:0000669 pericyte pericyte HGNC:8823, HGNC:8823 NoDOI Large_intestine +UBERON:0001310 umbilical artery umbilical arteries CL:0000669 pericyte cell pericytes HGNC:130, HGNC:2466, HGNC:2770, HGNC:8804 DOI:10.1016/0014-4800(90)90037-e|DOI:10.1007/s00441-003-0745-x|doi:10.1038/ng.2007.6.|DOI:10.1007/s00441-003-0745-x|DOI:10.1007/s00441-003-0745-x|DOI:10.1007/s00441-003-0745-x Placenta +UBERON:0007106 chorionic villus chorionic villous CL:0000669 pericyte pericytes HGNC:130, HGNC:2466, HGNC:2770, HGNC:8804 DOI:10.1016/0014-4800(90)90037-e|DOI:10.1007/s00441-003-0745-x|doi:10.1038/ng.2007.6.|DOI:10.1007/s00441-003-0745-x|DOI:10.1007/s00441-003-0745-x|DOI:10.1007/s00441-003-0745-x Placenta +UBERON:0004027 chorionic plate chorionic plate CL:0000669 pericyte pericytes HGNC:130, HGNC:2466, HGNC:2770, HGNC:8804 DOI:10.1016/0014-4800(90)90037-e|DOI:10.1007/s00441-003-0745-x|doi:10.1038/ng.2007.6.|DOI:10.1007/s00441-003-0745-x|DOI:10.1007/s00441-003-0745-x|DOI:10.1007/s00441-003-0745-x Placenta +UBERON:0004184 prostate gland stroma prostate stroma CL:0000669 pericyte prostate perictye HGNC:130, HGNC:29836, HGNC:4278 doi:10.1002/path.5751 Prostate +UBERON:8410041 venule of lymph node Venule CL:0000669 pericyte cell Pericyte HGNC:8803, HGNC:8803, HGNC:8804, HGNC:8804 DOI:10.3389/fcvm.2020.00052|XiangM,GrossoRA,TakedaA,PanJ,BekkhusT,BruloisK,DermadiD,NordlingS,VanlandewijckM,JalkanenS,UlvmarMH,ButcherEC|ASingle-CellTranscriptionalRoadmapoftheMouseandHumanLymphNodeLymphaticVasculature|FrontCardiovascMed|2020Apr30;7:52|doi:10|3389/fcvm|2020|00052|PMID:32426372;PMCID:PMC7204639| Lymph_node +UBERON:0002007 medulla of lymph node Medulla CL:0000669 pericyte cell Pericyte HGNC:8803, HGNC:8803, HGNC:8804, HGNC:8804 DOI:10.3389/fcvm.2020.00052|XiangM,GrossoRA,TakedaA,PanJ,BekkhusT,BruloisK,DermadiD,NordlingS,VanlandewijckM,JalkanenS,UlvmarMH,ButcherEC|ASingle-CellTranscriptionalRoadmapoftheMouseandHumanLymphNodeLymphaticVasculature|FrontCardiovascMed|2020Apr30;7:52|doi:10|3389/fcvm|2020|00052|PMID:32426372;PMCID:PMC7204639| Lymph_node +UBERON:0002067 dermis Dermis CL:0000669 pericyte cell Pericyte HGNC:130, HGNC:6934, HGNC:8804 DOI:10.1186/s12929-018-0423-7|DOI:10.1083/jcb.113.1.147|DOI:10.1016/j.jchemneu.2018.06.001|PMID:295192458|PMID:2007619|PMID:29885791 Skin +UBERON:0004864 vasculature of retina vasculature CL:0000669 pericyte Pericyte HGNC:15754, HGNC:2202, HGNC:6269, HGNC:7060 DOI:10.1016/j.cell.2019.01.004 Eye +UBERON:0003329 submucosa of anal canal submucosa CL:0000669 pericyte pericyte HGNC:8804, HGNC:8804 NoDOI Large_intestine +UBERON:0012399 large intestine smooth muscle longitudinal layer longitudinal muscle layer CL:0000669 pericyte pericyte HGNC:8804, HGNC:8823 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 Large_intestine +UBERON:0001982 capillary vasculature CL:0000669 pericyte pericyte HGNC:10001, HGNC:60, HGNC:6269 Heart +UBERON:0001979 venule vasculature CL:0000669 pericyte pericyte HGNC:10001, HGNC:60, HGNC:6269 Heart +UBERON:0002078 right cardiac atrium right atrium CL:0000669 pericyte pericyte HGNC:10001, HGNC:60, HGNC:6269 Heart +UBERON:0002439 myenteric nerve plexus myenteric plexus of Auerbach CL:0000669 pericyte pericyte HGNC:8804, HGNC:8804 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 Large_intestine +UBERON:0003331 submucosa of colon submucosa CL:0000669 pericyte pericyte HGNC:8804, HGNC:8804 NoDOI Large_intestine +UBERON:0005742 adventitia adventitia CL:0000669 pericyte pericyte HGNC:8804, HGNC:8804 NoDOI Large_intestine +UBERON:0001250 red pulp of spleen Red Pulp CL:0000669 pericyte Splenic Pericyte HGNC:130, HGNC:7809 DOI:10.1371/journal.pone.0191019|DOI:10.1007/s00418-020-01924-3 Spleen +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:14632, HGNC:52626 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:13600, HGNC:14454, HGNC:20391, HGNC:37219 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:2500, HGNC:52467 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:40401 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:10736, HGNC:19718, HGNC:20391, HGNC:53103 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:3009 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:1527, HGNC:16379, HGNC:20391 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:27823, HGNC:52626, HGNC:53175 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:40401 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:18638, HGNC:6136 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:10727, HGNC:14632, HGNC:52626 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:20391, HGNC:48724 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:14265, HGNC:3446, HGNC:5977 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:16379 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:14265, HGNC:3446, HGNC:5977 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:3179 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:2500, HGNC:9035 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:18638, HGNC:6136 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:27823, HGNC:52626, HGNC:53175 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:1527, HGNC:16379, HGNC:20391 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:3009 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:10736, HGNC:19718, HGNC:20391, HGNC:53103 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:16953, HGNC:22128, HGNC:31401 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:2500, HGNC:52467 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:13600, HGNC:14454, HGNC:20391, HGNC:37219 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:4680 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:3179 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:16379 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:14632, HGNC:52626 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:10727, HGNC:14632, HGNC:52626 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:4680 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:2500, HGNC:9035 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:20391, HGNC:48724 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002600 limbic lobe limbic lobe CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:16953, HGNC:22128, HGNC:31401 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0005215 kidney interstitium Interstitium CL:0000738 Leukocyte Leukocyte HGNC:9666 Kidney +UBERON:0001792 ganglionic layer of retina retinal ganglion cell layer CL:0000740 retinal ganglion cell Ganglion cell HGNC:11141, HGNC:11801, HGNC:11801, HGNC:14449, HGNC:16703, HGNC:19097, HGNC:19097, HGNC:20778, HGNC:7734, HGNC:7739, HGNC:9218, HGNC:9219, HGNC:9220 DOI:10.1017/S0952523819000087|DOI:10.1016/j.cell.2019.01.004 Eye +UBERON:4000088 mineralized cartilage tissue Mineralized Cartilage CL:0000743 hypertrophic chondrocyte hypertrophic chondrocyte HGNC:2185, HGNC:5341 Knee +UBERON:0001791 inner nuclear layer of retina inner nuclear layer CL:0000745 retina horizontal cell Horizontal Cell HGNC:1434, HGNC:1434, HGNC:6593, HGNC:8138, HGNC:8139, HGNC:9704 DOI:10.1016/j.preteyeres.2020.100844|DOI:10.1016/j.exer.2016.01.002 Eye +UBERON:0006566 left ventricle myocardium myocardium CL:0000746 cardiac muscle cell cardiomyocyte HGNC:12403, HGNC:3703, HGNC:7576, HGNC:7583 Heart +UBERON:0006567 right ventricle myocardium myocardium CL:0000746 cardiac muscle cell cardiomyocyte HGNC:12403, HGNC:3703, HGNC:7576, HGNC:7583 Heart +UBERON:0003379 cardiac muscle of right atrium myocardium CL:0000746 cardiac muscle cell cardiomyocyte HGNC:12403, HGNC:7576, HGNC:7939 Heart +UBERON:0001791 inner nuclear layer of retina inner nuclear layer CL:0000748 retinal bipolar neuron Bipolar Cell HGNC:12723, HGNC:13714, HGNC:1975, HGNC:1975, HGNC:4389, HGNC:4579, HGNC:4598, HGNC:6132, HGNC:7103, HGNC:7146, HGNC:8522, HGNC:9393, HGNC:9937 DOI:10.1016/j.cell.2019.01.004|DOI:10.1016/j.brainres.2007.06.007|DOI:10.1016/j.exer.2016.01.002 Eye +UBERON:0001791 inner nuclear layer of retina inner nuclear layer CL:0000749 ON-bipolar cell ON Bipolar cell HGNC:4400 DOI:10.1016/j.ophtha.2017.09.016 Eye +UBERON:0001791 inner nuclear layer of retina inner nuclear layer CL:0000751 rod bipolar cell rod bipolar cell HGNC:9393 DOI:10.1002/cne.10491 Eye +UBERON:0002371 Bone marrow Bone marrow CL:0000764 erythroid lineage cell early erythroid HGNC:11529, HGNC:11763, HGNC:1663, HGNC:1663, HGNC:31397, HGNC:3349, HGNC:4170, HGNC:4702, HGNC:607, HGNC:6251, HGNC:6342, HGNC:6345, HGNC:7553, HGNC:9666 DOI:10.1371/journal.pone.0162209 multi_loc +UBERON:0002371 Bone marrow Bone marrow CL:0000764 erythroid lineage cell mid erythroid HGNC:10006, HGNC:10008, HGNC:11272, HGNC:11763, HGNC:1663, HGNC:1663, HGNC:21256, HGNC:3349, HGNC:4702, HGNC:6342, HGNC:6345, HGNC:9666 multi_loc +UBERON:0002371 Bone marrow Bone marrow CL:0000764 erythroid lineage cell late erythroid HGNC:1093, HGNC:11763, HGNC:1663, HGNC:19911, HGNC:24040, HGNC:3349, HGNC:397, HGNC:4702, HGNC:4824, HGNC:4827, HGNC:4831, HGNC:6342, HGNC:9666 multi_loc +UBERON:0002371 Bone marrow Bone marrow CL:0000764 erythroid lineage cell late erythroid HGNC:1093, HGNC:11763, HGNC:1663, HGNC:19911, HGNC:24040, HGNC:3349, HGNC:397, HGNC:4702, HGNC:4824, HGNC:4827, HGNC:4831, HGNC:6342, HGNC:9666 Bone-Marrow +UBERON:0002371 Bone marrow Bone marrow CL:0000764 erythroid lineage cell early erythroid HGNC:11529, HGNC:11763, HGNC:1663, HGNC:1663, HGNC:31397, HGNC:3349, HGNC:4170, HGNC:4702, HGNC:607, HGNC:6251, HGNC:6342, HGNC:6345, HGNC:7553, HGNC:9666 DOI:10.1371/journal.pone.0162209 Bone-Marrow +UBERON:0002371 Bone marrow Bone marrow CL:0000764 erythroid lineage cell mid erythroid HGNC:10006, HGNC:10008, HGNC:11272, HGNC:11763, HGNC:1663, HGNC:1663, HGNC:21256, HGNC:3349, HGNC:4702, HGNC:6342, HGNC:6345, HGNC:9666 Bone-Marrow +UBERON:0002123 cortex of thymus cortex of thymus CL:0000764 erythroid lineage cell erythroid HGNC:1063, HGNC:18075, HGNC:28036, HGNC:397, HGNC:4823, HGNC:4824, HGNC:4826, HGNC:4827, HGNC:4831, HGNC:4832 DOI:10.1126/science.aay3224|NoDOI Thymus +UBERON:0004791 thymus trabecula thymus trabecula CL:0000764 erythroid lineage cell erythroid HGNC:1063, HGNC:18075, HGNC:28036, HGNC:397, HGNC:4823, HGNC:4824, HGNC:4826, HGNC:4827, HGNC:4831, HGNC:4832 DOI:10.1126/science.aay3224|NoDOI Thymus +UBERON:0000178 Blood Blood CL:0000767 basophil basophil HGNC:1604, HGNC:2014, HGNC:2298, HGNC:3609, HGNC:4171, HGNC:4855, HGNC:6012, HGNC:6012, HGNC:6017, HGNC:6017, HGNC:7317 Blood +UBERON:0002371 Bone marrow Bone marrow CL:0000767 basophil basophil HGNC:2014, HGNC:2298, HGNC:3609, HGNC:4171, HGNC:4855, HGNC:6012, HGNC:6017, HGNC:6017, HGNC:6024, HGNC:7317 Bone-Marrow +UBERON:0002405 immune system immune system of respiratory tract CL:0000767 basophil basophil HGNC:14558, HGNC:1604, HGNC:1686, HGNC:2252, HGNC:28344, HGNC:3358, HGNC:3609, HGNC:3611, HGNC:6012, HGNC:9666, HGNC:9666 Lung +UBERON:0004791 thymus trabecula thymus trabecula CL:0000771 eosinophil eosinophil HGNC:1659, HGNC:6059, HGNC:9362 DOI:10.1097/00000478-199003000-00010|DOI:10.1111/j.1440-1827.1995.tb03518.x.|DOI:10.2353/ajpath.2009.090015|LeeI,YuE,GoodRA,IkeharaS|Presenceofeosinophilicprecursorsinthehumanthymus:evidenceforintra-thymicdifferentiationofcellsineosinophiliclineage|PatholInt|1995Sep;45(9):655-62|doi:10|1111/j|1440-1827|1995|tb03518|x|PMID:8548038| Thymus +UBERON:0002371 Bone marrow Bone marrow CL:0000771 eosinophil eosinophil HGNC:1604, HGNC:17890, HGNC:2014, HGNC:2298, HGNC:3609, HGNC:4171, HGNC:4855, HGNC:6012, HGNC:6017, HGNC:6017, HGNC:7317 Bone-Marrow +UBERON:0003988 thymus corticomedullary boundary corticomedullary boundary of thymus CL:0000771 eosinophil eosinophil HGNC:1659, HGNC:6059, HGNC:9362 DOI:10.1097/00000478-199003000-00010|DOI:10.1111/j.1440-1827.1995.tb03518.x.|DOI:10.2353/ajpath.2009.090015|LeeI,YuE,GoodRA,IkeharaS|Presenceofeosinophilicprecursorsinthehumanthymus:evidenceforintra-thymicdifferentiationofcellsineosinophiliclineage|PatholInt|1995Sep;45(9):655-62|doi:10|1111/j|1440-1827|1995|tb03518|x|PMID:8548038| Thymus +UBERON:0002124 medulla of thymus medulla of thymus CL:0000771 eosinophil eosinophil HGNC:1659, HGNC:6059, HGNC:9362 DOI:10.1097/00000478-199003000-00010|DOI:10.1111/j.1440-1827.1995.tb03518.x|DOI:10.2353/ajpath.2009.090015|LeeI,YuE,GoodRA,IkeharaS|Presenceofeosinophilicprecursorsinthehumanthymus:evidenceforintra-thymicdifferentiationofcellsineosinophiliclineage|PatholInt|1995Sep;45(9):655-62|doi:10|1111/j|1440-1827|1995|tb03518|x|PMID:8548038| Thymus +UBERON:0002072 hypodermis Subcutaneous CL:0000771 eosinophil Eosinophil HGNC:1709, HGNC:7218 DOI:10.1016/j.jaip.2018.06.002|PMID:29902530| Skin +UBERON:0002067 dermis Dermis CL:0000771 eosinophil Eosinophil HGNC:1709, HGNC:7218 DOI:10.1016/j.jaip.2018.06.002|PMID:29902530| Skin +UBERON:0000178 Blood Blood CL:0000771 eosinophil eosinophil HGNC:17890, HGNC:2014, HGNC:2298, HGNC:3609, HGNC:4015, HGNC:4171, HGNC:4855, HGNC:6017, HGNC:6017, HGNC:7317 Blood +UBERON:0000178 Blood Blood CL:0000775 neutrophil neutrophil HGNC:10489, HGNC:11249, HGNC:1645, HGNC:1820, HGNC:3619, HGNC:3623, HGNC:4015, HGNC:500, HGNC:6140, HGNC:6149, HGNC:6149, HGNC:7176, HGNC:8498, HGNC:8904 Blood +UBERON:0001251 Marginal Zone of Spleen Superficial Zone CL:0000775 neutrophil Neutrophil HGNC:1820, HGNC:3309, HGNC:4015, HGNC:7218 DOI:10.1038/ni.2194|DOI:10.1038/ni.2830|DOI:10.1111/imm.12469 Spleen +UBERON:0005353 spleen perifollicular zone Perifollicular Zone CL:0000775 neutrophil Neutrophil HGNC:1820, HGNC:3309, HGNC:4015, HGNC:7218 DOI:10.1038/ni.2194|DOI:10.1038/ni.2830 Spleen +UBERON:0002371 Bone marrow Bone marrow CL:0000775 neutrophil neutrophil HGNC:10489, HGNC:11249, HGNC:1820, HGNC:2334, HGNC:3613, HGNC:3619, HGNC:3623, HGNC:4015, HGNC:500, HGNC:6140, HGNC:6149, HGNC:6149, HGNC:7176, HGNC:8498, HGNC:8904, HGNC:9053 Bone-Marrow +UBERON:0002072 hypodermis Subcutaneous CL:0000775 neutrophil Neutrophil HGNC:11249, HGNC:7218 DOI:10.1172/JCI124616|DOI:10.1111/1523-1747.ep12506462|DOI:10.4049/jimmunol.181.5.3628|PMID:31205028|PMID:6276474||PMID:18714037 Skin +UBERON:0002067 dermis Dermis CL:0000775 neutrophil Neutrophil HGNC:11249, HGNC:7218 DOI:10.1172/JCI124616|DOI:10.1111/1523-1747.ep12506462|DOI:10.4049/jimmunol.181.5.3628|PMID:31205028|PMID:6276474||PMID:18714037 Skin +UBERON:0000017 exocrine pancreas Exocrine pancreas CL:0000775 neutrophil Neutrophil HGNC:3309, HGNC:7218 Pancreas +UBERON:0005215 kidney interstitium Interstitium CL:0000775 neutrophil Neutrophil HGNC:10498, HGNC:10499, HGNC:2439, HGNC:3620 DOI:10.1101/2021.07.28.454201|DOI:10.1016/j.exphem.2016.10.008|DOI:10.1038/s41586-020-2941-1|DOI:10.1172/jci.insight.133267|DOI:10.1126/science.aat5031 Kidney +UBERON:0002405 immune system immune system of respiratory tract CL:0000775 neutrophil neutrophil HGNC:14558, HGNC:1603, HGNC:1686, HGNC:2252, HGNC:2439, HGNC:28344, HGNC:3611, HGNC:3620, HGNC:3620, HGNC:9666, HGNC:9666 Lung +UBERON:0009980 condyle of femur Distal Femur CL:0000778 mononuclear osteoclast mononuclear osteoclast HGNC:124 Knee +UBERON:0009980 condyle of femur Distal Femur CL:0000779 multinuclear osteoclast multinuclear osteoclast HGNC:124, HGNC:2536 Knee +UBERON:0002405 immune system immune system of respiratory tract CL:0000784 plasmacytoid dendritic cell plasmacytoid dendritic cell HGNC:13258, HGNC:14558, HGNC:1686, HGNC:2252, HGNC:28344, HGNC:3611, HGNC:4540, HGNC:4948, HGNC:6012, HGNC:8004, HGNC:9666, HGNC:9666 Lung +UBERON:0004647 liver lobule hepatic Lobule CL:0000784 plasmacytoid dendritic cell plasmacytoid Dendritic cell HGNC:6152 DOI:10.1111/imm.12888|PMID:29313948 Liver +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/lamina propria CL:0000786 plasma cell plasma cell HGNC:10658, HGNC:10658 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 Large_intestine +UBERON:0001266 splenic cord Splenic Cord CL:0000786 plasma cell Plasma Cell HGNC:10658, HGNC:10658, HGNC:11922, HGNC:12801, HGNC:1667, HGNC:1698, HGNC:2561, HGNC:5525, HGNC:5541, HGNC:5713, HGNC:6119, HGNC:6148 NoDOI|DOI:10.1002/eji.200425442|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0001251 Marginal Zone of Spleen Superficial Zone CL:0000786 plasma cell Plasma Cell HGNC:10658, HGNC:10658, HGNC:11922, HGNC:12801, HGNC:1667, HGNC:1698, HGNC:2561, HGNC:5525, HGNC:5541, HGNC:5541, HGNC:5713, HGNC:6119, HGNC:6148, HGNC:7315 NoDOI|DOI:10.1002/eji.200425442|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0003988 thymus corticomedullary boundary corticomedullary boundary of thymus CL:0000786 plasma cell plasma cell HGNC:10658, HGNC:11326, HGNC:12801, HGNC:14236, HGNC:1633, HGNC:1653, HGNC:18624, HGNC:23400, HGNC:30125, HGNC:5525, HGNC:5525, HGNC:5527, HGNC:5527, HGNC:5541, HGNC:5713, HGNC:5716, HGNC:7315 DOI:10.1126/science.aay3224|DOI:10.1126/sciimmunol.aah4447|DOI:10.1080/01926230600865549|PearseG|Normalstructure,functionandhistologyofthethymus|ToxicolPathol|2006;34(5):504-14|doi:10|1080/01926230600865549|PMID:17067941| Thymus +UBERON:0005215 kidney interstitium Interstitium CL:0000786 plasma cell Plasma cell HGNC:18508, HGNC:30125, HGNC:5713, HGNC:5716 DOI:10.1101/2021.07.28.454201|DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41586-020-2941-1|DOI:10.1172/jci.insight.133267|DOI:10.1126/science.aat5031 Kidney +UBERON:0002371 Bone marrow Bone marrow CL:0000786 plasma cell plasma cell HGNC:10658, HGNC:10658, HGNC:11913, HGNC:11922, HGNC:14236, HGNC:1633, HGNC:1645, HGNC:1667, HGNC:2336, HGNC:23400, HGNC:30125, HGNC:5478, HGNC:5480, HGNC:5525, HGNC:5716 DOI:10.1073/pnas.172384399 Bone-Marrow +UBERON:0002067 dermis Dermis CL:0000786 plasma cell Plasma cell HGNC:10658, HGNC:1667, HGNC:1698 DOI:10.1016/j.jid.2019.05.009|PMID:31152755 Skin +UBERON:0009745 lymph node medullary cord Medullary Cord CL:0000786 plasma cell Plasma Cell HGNC:10658, HGNC:10658, HGNC:11922, HGNC:1667, HGNC:1667, HGNC:1698, HGNC:6119, HGNC:6119, HGNC:7315, HGNC:9346 NoDOI|NoDOI|HsuSM,JaffeES|PhenotypicexpressionofB-lymphocytes|2|Immunoglobulinexpressionofgerminalcentercells|AmJPathol|1984Mar;1143:396-402|PMID:6364822;PMCID:PMC1900414| Lymph_node +UBERON:8410075 lymph node paracortical cord Paracortical Cord CL:0000786 plasma cell Plasma Cell HGNC:10658, HGNC:10658, HGNC:1667, HGNC:1667, HGNC:1698, HGNC:6119, HGNC:6119, HGNC:7315, HGNC:9346 NoDOI Lymph_node +UBERON:0002405 immune system immune system of respiratory tract CL:0000786 plasma cell plasma cell HGNC:10658, HGNC:14236, HGNC:1633, HGNC:1667, HGNC:1686, HGNC:18233, HGNC:2252, HGNC:30125, HGNC:7315, HGNC:7315, HGNC:9666, HGNC:9666 Lung +UBERON:0001250 red pulp of spleen Red Pulp CL:0000787 memory B cell Memory-Like B Cell HGNC:11922, HGNC:1633, HGNC:1698, HGNC:5480, HGNC:5541, HGNC:7315, HGNC:7315 DOI:10.1007/s00418-013-1172-z|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0002371 Bone marrow Bone marrow CL:0000787 memory B cell memory B cell HGNC:10720, HGNC:11922, HGNC:11922, HGNC:1633, HGNC:1633, HGNC:1645, HGNC:1667, HGNC:2336, HGNC:5478, HGNC:5480, HGNC:5525, HGNC:6210, HGNC:7154, HGNC:7315, HGNC:7315 DOI:10.1002/jcla.20001 Bone-Marrow +UBERON:0001251 Marginal Zone of Spleen Superficial Zone CL:0000787 memory B cell Memory B Cell HGNC:11922, HGNC:1633, HGNC:1698, HGNC:5480, HGNC:5541, HGNC:7315, HGNC:7315 DOI:10.1111/imm.12469|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0013132 Penicillar Arteriole Penicillar Arteriole CL:0000787 memory B cell Memory-Like B Cell HGNC:1633, HGNC:1698, HGNC:5541, HGNC:7315, HGNC:7315 DOI:10.1007/s00418-013-1172-z|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0004041 spleen primary B follicle Primary Follicle CL:0000787 memory B cell Memory B Cell HGNC:11922, HGNC:1633, HGNC:1698, HGNC:5480, HGNC:5541, HGNC:7315, HGNC:7315 DOI:10.1111/imm.12469|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0000178 Blood Blood CL:0000787 memory B cell memory B cell HGNC:10720, HGNC:11922, HGNC:11922, HGNC:1633, HGNC:1633, HGNC:1643, HGNC:2336, HGNC:5478, HGNC:5480, HGNC:5525, HGNC:5541, HGNC:6210, HGNC:7315, HGNC:7315 DOI:10.1002/jcla.20001 Blood +UBERON:0010395 lymph node primary follicle Primary Follicle CL:0000787 memory B cell Memory B Cell HGNC:11922, HGNC:1633, HGNC:1633, HGNC:1697, HGNC:1698, HGNC:4947, HGNC:7315, HGNC:7315, HGNC:9666 NODOI|NoDOI|HsuSM,JaffeES|PhenotypicexpressionofB-lymphocytes|2|Immunoglobulinexpressionofgerminalcentercells|AmJPathol|1984Mar;1143:396-402|PMID:6364822;PMCID:PMC1900414| Lymph_node +UBERON:0010420 lymph node germinal center mantle zone Mantle Zone CL:0000787 memory B cell Memory B Cell HGNC:1633, HGNC:1633, HGNC:1697, HGNC:1698, HGNC:4947, HGNC:7315, HGNC:7315, HGNC:9666 NODOI|NoDOI|HsuSM,JaffeES|PhenotypicexpressionofB-lymphocytes|2|Immunoglobulinexpressionofgerminalcentercells|AmJPathol|1984Mar;1143:396-402|PMID:6364822;PMCID:PMC1900414| Lymph_node +UBERON:0010420 lymph node germinal center mantle zone Mantle Zone CL:0000788 naive B cell Naive B Cell HGNC:10720, HGNC:1633, HGNC:1636, HGNC:1667, HGNC:1697, HGNC:2336, HGNC:24692, HGNC:3612, HGNC:3612, HGNC:4947, HGNC:5480, HGNC:5480, HGNC:7154, HGNC:7315, HGNC:7315, HGNC:9666, HGNC:990 NoDOI|NoDOI Lymph_node +UBERON:0001250 red pulp of spleen Red Pulp CL:0000788 naive B Cell Naive B Cell HGNC:1633, HGNC:1698, HGNC:5480, HGNC:7315, HGNC:7315 DOI:10.1007/s00418-013-1172-z|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0013132 Penicillar Arteriole Penicillar Arteriole CL:0000788 naive B Cell Naive B Cell HGNC:1633, HGNC:1698, HGNC:5480, HGNC:5541, HGNC:7315, HGNC:7315 DOI:10.1111/imm.12469|DOI:10.1007/s00418-013-1172-z|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0004041 spleen primary B follicle Primary Follicle CL:0000788 naive B cell Naive B Cell HGNC:11648, HGNC:2428, HGNC:3612, HGNC:5480, HGNC:5480, HGNC:6015, HGNC:7315 DOI:10.1111/imm.12469|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0002124 medulla of thymus medulla of thymus CL:0000788 naive B cell naive B cell HGNC:11648, HGNC:1633, HGNC:1643, HGNC:1698, HGNC:3612, HGNC:4944, HGNC:4947, HGNC:5480, HGNC:5480, HGNC:5541, HGNC:5541, HGNC:591, HGNC:7315, HGNC:7315 DOI:10.1126/science.aay3224|DOI:10.1126/sciimmunol.aah4447 Thymus +UBERON:0010395 lymph node primary follicle Primary Follicle CL:0000788 naive B cell Naive B Cell HGNC:10720, HGNC:11922, HGNC:1633, HGNC:1636, HGNC:1667, HGNC:1697, HGNC:2336, HGNC:24692, HGNC:3612, HGNC:3612, HGNC:4947, HGNC:5480, HGNC:5480, HGNC:7154, HGNC:7315, HGNC:7315, HGNC:9666, HGNC:990 NODOI|NoDOI|HsuSM,JaffeES|PhenotypicexpressionofB-lymphocytes|2|Immunoglobulinexpressionofgerminalcentercells|AmJPathol|1984Mar;1143:396-402|PMID:6364822;PMCID:PMC1900414| Lymph_node +UBERON:0002371 Bone marrow Bone marrow CL:0000788 naive B cell naive B cell HGNC:10658, HGNC:11919, HGNC:11922, HGNC:1633, HGNC:1633, HGNC:1645, HGNC:1667, HGNC:2336, HGNC:3612, HGNC:5480, HGNC:5541, HGNC:7315, HGNC:8619 DOI:10.1038/s41467-019-12464-3 Bone-Marrow +UBERON:0000178 Blood Blood CL:0000788 naive B cell naive B cell HGNC:11919, HGNC:11922, HGNC:1633, HGNC:1633, HGNC:1645, HGNC:1667, HGNC:2336, HGNC:3612, HGNC:5480, HGNC:5541, HGNC:7154, HGNC:7315, HGNC:7315, HGNC:8619 DOI:10.1038/s41467-019-12464-3 Blood +UBERON:0000397 colonic epithelium lymphcyte CL:0000793 CD4-positive, alpha-beta intraepithelial T cell surface intraepithelial CD4+ lymphocyte HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1678, HGNC:1678, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695, HGNC:1695 DOI:10.1093/intimm/7.9.1473|PMID:7495755 Large_intestine +UBERON:0000397 colonic epithelium lymphcyte CL:0000793 CD4-positive, alpha-beta intraepithelial T cell surface intraepithelial CD4+ lymphocyte HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1678, HGNC:1678, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695, HGNC:1695 DOI:10.1093/intimm/7.9.1473|PMID:7495755 multi_loc +UBERON:0000397 colonic epithelium epithelium CL:0000793 CD4-positive, alpha-beta intraepithelial T cell surface intraepithelial CD4+ lymphocyte HGNC:1639, HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1678, HGNC:1678, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695 DOI:10.1093/intimm/7.9.1473|PMID:7495755 multi_loc +UBERON:0000397 colonic epithelium epithelium CL:0000793 CD4-positive, alpha-beta intraepithelial T cell surface intraepithelial CD4+ lymphocyte HGNC:1639, HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1678, HGNC:1678, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695 DOI:10.1093/intimm/7.9.1473|PMID:7495755 Large_intestine +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0000794 CD8-positive, alpha-beta cytotoxic T cell Cytotoxic T Cells HGNC:1674, HGNC:1706, HGNC:4414, HGNC:4709, HGNC:9360 DOI:10.1126/sciimmunol.aau6085|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0000397 colonic epithelium lymphocyte CL:0000796 CD8-alpha-beta-positive, alpha-beta intraepithelial T cell surface intraepithelial CD8+ alph beta positive alpha/beta lymphocyte HGNC:1639, HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695, HGNC:1706, HGNC:1706 DOI:10.1093/intimm/7.9.1473|PMID:7495755 Large_intestine +UBERON:0002124 medulla of thymus medulla of thymus CL:0000798 gamma-delta T cell gamma-delta T cell HGNC:10720, HGNC:10827, HGNC:11922, HGNC:12252, HGNC:12253, HGNC:12271, HGNC:14240, HGNC:1610, HGNC:1634, HGNC:1674, HGNC:18874, HGNC:29109, HGNC:307, HGNC:3621, HGNC:533, HGNC:5438, HGNC:9666 DOI:10.1126/science.aay3224|DOI:10.4049/jimmunol.1303119 Thymus +UBERON:8410075 lymph node paracortical cord Paracortical Cord CL:0000798 gamma-delta T cell Gamma/Delta T cells HGNC:12253, HGNC:12271, HGNC:1673, HGNC:1675, HGNC:5361, HGNC:6378 DOI:10.1002/cti2.1079|SantS,JenkinsMR,DashP,WatsonKA,WangZ,PizzollaA,KoutsakosM,NguyenTH,LappasM,CroweJ,LoudovarisT,ManneringSI,WestallGP,KotsimbosTC,ChengAC,WakimL,DohertyPC,ThomasPG,LohL,KedzierskaK|Human??T-cellreceptorrepertoireisshapedbyinfluenzaviruses,ageandtissuecompartmentalisation|ClinTranslImmunology|2019Sep23;89:e1079|doi:10|1002/cti2|1079|PMID:31559018;PMCID:PMC6756999| Lymph_node +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0000798 gamma-delta T cell Gamma/Delta T cells HGNC:12252, HGNC:12271, HGNC:12287, HGNC:1674, HGNC:3619 DOI:10.1016/j.immuni.2016.07.007|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0004647 liver lobule hepatic Lobule CL:0000798 gamma delta T cell gamma delta T cell HGNC:11922, HGNC:16647, HGNC:4540, HGNC:9666 Liver +UBERON:0000397 colonic epithelium lymphocyte CL:0000802 CD8-alpha alpha positive, gamma-delta intraepithelial T cell surface intraepithelial CD8+ lymphocyte gamma/delta HGNC:1639, HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695, HGNC:1706, HGNC:1706 DOI:10.1093/intimm/7.9.1473|PMID:7495755 Large_intestine +UBERON:0002123 cortex of thymus cortex of thymus CL:0000809 double-positive, alpha-beta thymocyte double positive thymocyte HGNC:11922, HGNC:12556, HGNC:14240, HGNC:14415, HGNC:1634, HGNC:1634, HGNC:1635, HGNC:1638, HGNC:1678, HGNC:1685, HGNC:1694, HGNC:1695, HGNC:1706, HGNC:1706, HGNC:1707, HGNC:26009 DOI:10.1126/science.aay3224|DOI:10.3389/fimmu.2019.00447. Thymus +UBERON:0005215 kidney interstitium Interstitium CL:0000814 mature NK T cell Natural Killer T Cell HGNC:10473, HGNC:1675, HGNC:1677, HGNC:16892, HGNC:4414, HGNC:4708, HGNC:7830 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41586-020-2941-1|DOI:10.1172/jci.insight.133267||PMID:31249312|PMCID:PMC6597610 Kidney +UBERON:0002405 immune system immune system of respiratory tract CL:0000814 mature NK T cell mature NK T cell HGNC:1674, HGNC:1674, HGNC:1674, HGNC:1686, HGNC:2252, HGNC:6024, HGNC:7656, HGNC:7656, HGNC:9666, HGNC:9666 Lung +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0000815 regulatory T cell T Regulatory Cell HGNC:1608, HGNC:1674, HGNC:1678, HGNC:6008, HGNC:6008, HGNC:6024, HGNC:6106, HGNC:6106, HGNC:9666 DOI:10.1016/j.immuni.2012.09.020|DOI:10.1007/s00262-015-1729-x|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0000815 regulatory T cell T Regulatory Cell HGNC:1608, HGNC:6008, HGNC:6106 DOI:10.1016/j.immuni.2012.09.020|DOI:10.1007/s00262-015-1729-x|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0005215 kidney interstitium Interstitium CL:0000815 regulatory T cell regulatory T cell HGNC:6106 Kidney +UBERON:0000178 Blood Blood CL:0000815 regulatory T cell T regulatory HGNC:11910, HGNC:11918, HGNC:12029, HGNC:12156, HGNC:1607, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:2505, HGNC:26838, HGNC:30698, HGNC:6008, HGNC:6024, HGNC:6106, HGNC:6106, HGNC:636, HGNC:6711 Blood +UBERON:0002337 endometrial stroma endometrial stroma CL:0000815 regulatory T cell regulatory T cell HGNC:6106 DOI:10.1038/ni904 Placenta +UBERON:0002405 immune system immune system of respiratory tract CL:0000815 regulatory T cell regulatory T cell HGNC:11918, HGNC:11918, HGNC:1674, HGNC:1674, HGNC:1686, HGNC:19364, HGNC:2252, HGNC:23527, HGNC:2505, HGNC:2505, HGNC:6024, HGNC:6106, HGNC:6106, HGNC:9666, HGNC:9666 Lung +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0000815 regulatory T cell T Regulatory Cell HGNC:1608, HGNC:1674, HGNC:1678, HGNC:6008, HGNC:6008, HGNC:6024, HGNC:6106, HGNC:6106, HGNC:9666 DOI:10.1016/j.immuni.2012.09.020|DOI:10.1007/s00262-015-1729-x|DOI:10.1186/s13059-019-1906-x multi_loc +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0000815 regulatory T cell T Regulatory Cell HGNC:1608, HGNC:6008, HGNC:6106 DOI:10.1016/j.immuni.2012.09.020|DOI:10.1007/s00262-015-1729-x|DOI:10.1186/s13059-019-1906-x multi_loc +UBERON:0001961 mucosa-associated lymphoid tissue subcutaneous skin-associated lymphoid tissue CL:0000815 regulatory T cell T reg HGNC:1633, HGNC:1633, HGNC:1698, HGNC:1698 NoDOI Large_intestine +UBERON:0001961 mucosa-associated lymphoid tissue dermal skin-associated lymphoid tissue CL:0000815 regulatory T cell T reg HGNC:1673, HGNC:1673, HGNC:1678, HGNC:1678, HGNC:6106, HGNC:6106 NoDOI Large_intestine +UBERON:8410067 lymph node interfollicular cortex Interfollicular Cortex CL:0000815 regulatory T cell T Regulatory Cell HGNC:1675, HGNC:1678, HGNC:2505, HGNC:6008, HGNC:6008, HGNC:6106, HGNC:6106 DOI:10.4049/jimmunol.1701025|NoDOI|KunickiMA,AmayaHernandezLC,DavisKL,BacchettaR,RoncaroloMG|IdentityandDiversityofHumanPeripheralThandTRegulatoryCellsDefinedbySingle-CellMassCytometry|JImmunol|2018Jan1;2001:336-346|doi:10|4049/jimmunol|1701025|Epub2017Nov27|PMID:29180490| Lymph_node +UBERON:0001961 mucosa-associated lymphoid tissue subcutaneous skin-associated lymphoid tissue CL:0000815 regulatory T cell T reg HGNC:1633, HGNC:1633, HGNC:1698, HGNC:1698 NoDOI multi_loc +UBERON:8410075 lymph node paracortical cord Paracortical Cord CL:0000815 regulatory T cell T Regulatory Cell HGNC:1675, HGNC:1678, HGNC:2505, HGNC:6008, HGNC:6008, HGNC:6106, HGNC:6106 DOI:10.4049/jimmunol.1701025|KunickiMA,AmayaHernandezLC,DavisKL,BacchettaR,RoncaroloMG|IdentityandDiversityofHumanPeripheralThandTRegulatoryCellsDefinedbySingle-CellMassCytometry|JImmunol|2018Jan1;2001:336-346|doi:10|4049/jimmunol|1701025|Epub2017Nov27|PMID:29180490| Lymph_node +UBERON:0002371 Bone marrow Bone marrow CL:0000815 regulatory T cell T regulatory HGNC:11910, HGNC:11918, HGNC:12029, HGNC:12156, HGNC:1607, HGNC:26838, HGNC:30698, HGNC:6024, HGNC:6106, HGNC:636, HGNC:6711 Bone-Marrow +UBERON:0001961 mucosa-associated lymphoid tissue dermal skin-associated lymphoid tissue CL:0000815 regulatory T cell T reg HGNC:1673, HGNC:1673, HGNC:1678, HGNC:1678, HGNC:6106, HGNC:6106 NoDOI multi_loc +UBERON:0002067 dermis Dermis CL:0000815 regulatory T cell T reg HGNC:1673, HGNC:1678, HGNC:6106 DOI:10.1111/1523-1747.ep12470172|DOI:10.1111/imm.12791|DOI:10.1111/imm.12791|DOI:10.1111/imm.12791|PMID:3494791|PMID:28699278|PMID:28699278|PMID:28699278 Skin +UBERON:0002072 hypodermis Subcutaneous CL:0000815 regulatory T cell T reg HGNC:1673, HGNC:1678, HGNC:6106 DOI:10.1111/1523-1747.ep12470172|DOI:10.1111/imm.12791|DOI:10.1111/imm.12791|DOI:10.1111/imm.12791|PMID:3494791|PMID:28699278|PMID:28699278|PMID:28699278 Skin +UBERON:0002371 Bone marrow Bone marrow CL:0000816 immature B cell immature B cell HGNC:11922, HGNC:1633, HGNC:1633, HGNC:1643, HGNC:2336, HGNC:5480, HGNC:5541, HGNC:5541, HGNC:7315, HGNC:7315, HGNC:8619 DOI:10.3389/fimmu.2012.00302 Bone-Marrow +UBERON:0000178 Blood Blood CL:0000816 immature B cell immature B cell HGNC:1633, HGNC:1633, HGNC:5480, HGNC:5541, HGNC:5541, HGNC:7154, HGNC:7315, HGNC:7315, HGNC:8619 DOI:10.3389/fimmu.2012.00302 Blood +UBERON:0002371 Bone marrow Bone marrow CL:0000817 precursor B cell precursor B cell HGNC:1633, HGNC:1633, HGNC:1662, HGNC:5480, HGNC:5541, HGNC:6024, HGNC:7154, HGNC:8619 DOI:10.1016/j.exphem.2018.09.004 Bone-Marrow +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0000818 transitional stage B cell Transitional Immature B Cells HGNC:11648, HGNC:25026, HGNC:2561, HGNC:3612, HGNC:3612, HGNC:5480, HGNC:5541, HGNC:598, HGNC:6015, HGNC:7315 DOI:10.1093/intimm/14.2.157|DOI:10.1038/s41421-020-0157-z Spleen +UBERON:0001251 Marginal Zone of Spleen Superficial Zone CL:0000818 transitional stage B cell Transitional Immature B Cells HGNC:1633, HGNC:1698, HGNC:3612, HGNC:7315, HGNC:7315 DOI:10.1093/intimm/14.2.157|DOI:10.1111/imm.12469|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0000178 Blood Blood CL:0000818 transitional stage B cell transitional B cell HGNC:1004, HGNC:11200, HGNC:11648, HGNC:11922, HGNC:1633, HGNC:1643, HGNC:1645, HGNC:1645, HGNC:1667, HGNC:1685, HGNC:18504, HGNC:2336, HGNC:38476, HGNC:5480, HGNC:7154, HGNC:7315 DOI:10.1073/pnas.172384399 Blood +UBERON:0002371 Bone marrow Bone marrow CL:0000818 transitional stage B cell transitional B cell HGNC:1004, HGNC:11200, HGNC:11648, HGNC:11784, HGNC:1628, HGNC:1633, HGNC:1636, HGNC:1645, HGNC:1674, HGNC:18504, HGNC:26705, HGNC:3619, HGNC:38476, HGNC:6012, HGNC:6152, HGNC:7656 DOI:10.1073/pnas.172384399 Bone-Marrow +UBERON:0000178 Blood Blood CL:0000824 mature natural killer cell mature Natural killer HGNC:12253, HGNC:1633, HGNC:1674, HGNC:2064, HGNC:2479, HGNC:3619, HGNC:3619, HGNC:4708, HGNC:4709, HGNC:6373, HGNC:7315, HGNC:7656, HGNC:921, HGNC:9360 Blood +UBERON:0002371 Bone marrow Bone marrow CL:0000824 mature natural killer cell mature Natural killer HGNC:12253, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:2064, HGNC:2479, HGNC:2505, HGNC:3619, HGNC:4708, HGNC:4709, HGNC:6008, HGNC:6106, HGNC:6373, HGNC:9360 Bone-Marrow +UBERON:0002371 Bone marrow Bone marrow CL:0000826 pro-B cell pro B progenitor HGNC:12709, HGNC:1633, HGNC:1662, HGNC:2983, HGNC:6024, HGNC:7154, HGNC:7154, HGNC:9831 DOI:10.1073/pnas.172384399 Bone-Marrow +UBERON:0002371 Bone marrow Bone marrow CL:0000836 promyelocyte promyelocyte HGNC:11249, HGNC:1820, HGNC:2334, HGNC:2532, HGNC:3309, HGNC:3613, HGNC:3619, HGNC:4015, HGNC:500, HGNC:6140, HGNC:6149, HGNC:7218, HGNC:9053, HGNC:913, HGNC:9495 Bone-Marrow +UBERON:0002371 Bone marrow Bone marrow CL:0000837 hematopoietic multipotent progenitor cell multipotent progenitor cell HGNC:11245, HGNC:11801, HGNC:1628, HGNC:1633, HGNC:1639, HGNC:1662, HGNC:1662, HGNC:1667, HGNC:1674, HGNC:3619, HGNC:3765, HGNC:4702, HGNC:7656, HGNC:9666 Bone-Marrow +UBERON:0002371 Bone marrow Bone marrow CL:0000840 immature conventional dendritic cell transitional Dendritic Cell HGNC:10875, HGNC:11763, HGNC:1643, HGNC:1663, HGNC:3349, HGNC:4702, HGNC:6342, HGNC:905, HGNC:9666 DOI:10.1182/blood-2004-02-0769 Bone-Marrow +UBERON:0000178 Blood Blood CL:0000840 immature conventional dendritic cell transitional Dendritic Cell (tDC) HGNC:10875, HGNC:10875, HGNC:1628, HGNC:1633, HGNC:1643, HGNC:1674, HGNC:3619, HGNC:4947, HGNC:6012, HGNC:6152, HGNC:7656, HGNC:905, HGNC:905 DOI:10.1182/blood-2004-02-0769 Blood +UBERON:0005196 spleen germinal center Germinal Center CL:0000844 germinal center B cell Germinal Center B Cell HGNC:11922, HGNC:13203, HGNC:5480, HGNC:7107, HGNC:7315 DOI:10.1371/journal.pone.0229778|DOI:10.1111/j.1365-2559.1986.tb02482.x|DOI:10.1111/j.1365-2559.1985.tb02841.x|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0001251 Marginal Zone of Spleen Superficial Zone CL:0000845 marginal zone B cell of spleen Superficial Zone B Cell HGNC:11922, HGNC:1636, HGNC:1636, HGNC:1637, HGNC:2336, HGNC:3612, HGNC:5480, HGNC:5541, HGNC:5541, HGNC:6018, HGNC:7315 DOI:10.1111/imm.12469|DOI:10.1182/blood-2004-01-0346|DOI:10.1182/blood-2004-01-0346 Spleen +UBERON:0002405 immune system immune system of respiratory tract CL:0000860 classical monocyte classical inflammatory monocyte HGNC:10499, HGNC:14558, HGNC:1603, HGNC:1628, HGNC:1686, HGNC:2252, HGNC:2464, HGNC:28344, HGNC:3611, HGNC:3623, HGNC:9666, HGNC:9666 Lung +UBERON:0003988 thymus corticomedullary boundary corticomedullary boundary of thymus CL:0000866 thymic macrophage macrophage HGNC:10044, HGNC:10751, HGNC:10909, HGNC:1241, HGNC:1242, HGNC:1245, HGNC:13378, HGNC:1631, HGNC:1641, HGNC:1693, HGNC:18628, HGNC:5344, HGNC:613, HGNC:6149, HGNC:6152, HGNC:6740, HGNC:9472 DOI:10.1126/science.aay3224|DOI:10.1016/j.imbio.2008.07.032|DOI:10.1016/s0065-2776(08)60900-1 Thymus +UBERON:0002122 capsule of thymus capsule of thymus CL:0000866 thymic macrophage macrophage HGNC:10044, HGNC:10751, HGNC:10909, HGNC:1241, HGNC:1242, HGNC:1245, HGNC:13378, HGNC:1631, HGNC:1641, HGNC:1693, HGNC:18628, HGNC:5344, HGNC:613, HGNC:6149, HGNC:6152, HGNC:6740, HGNC:9472 DOI:10.1126/science.aay3224|DOI:10.1016/j.imbio.2008.07.032.|DOI:10.1016/s0065-2776(08)60900-1 Thymus +UBERON:0004791 thymus trabecula thymus trabecula CL:0000866 thymic macrophage macrophage HGNC:10044, HGNC:10751, HGNC:10909, HGNC:1241, HGNC:1242, HGNC:1245, HGNC:13378, HGNC:1631, HGNC:1641, HGNC:1693, HGNC:18628, HGNC:5344, HGNC:613, HGNC:6149, HGNC:6152, HGNC:6740, HGNC:9472 DOI:10.1126/science.aay3224|DOI:10.1016/j.imbio.2008.07.032.|DOI:10.1016/s0065-2776(08)60900-1 Thymus +UBERON:0001251 Marginal Zone of Spleen Superficial Zone CL:0000872 splenic marginal zone macrophage Macrophage HGNC:1631, HGNC:1690, HGNC:1693, HGNC:613 DOI:10.1111/imm.12469|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0001250 red pulp of spleen Red Pulp CL:0000874 splenic red pulp macrophage Macrophage HGNC:11127, HGNC:1631, HGNC:1690, HGNC:1693, HGNC:613, HGNC:7809 DOI:10.1111/imm.12469|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0001266 splenic cord Splenic Cord CL:0000874 splenic red pulp macrophage Red Pulp Macrophage HGNC:1631, HGNC:1690, HGNC:1693, HGNC:613 NoDOI|DOI:10.1182/bloodadvances.2017015008|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0002405 immune system immune system of respiratory tract CL:0000875 non-classical monocyte non-classical or patrolling monocyte HGNC:13378, HGNC:14261, HGNC:14558, HGNC:1686, HGNC:2252, HGNC:2433, HGNC:28344, HGNC:3611, HGNC:9666, HGNC:9666 Lung +UBERON:0005215 kidney interstitium Interstitium CL:0000875 non-classical monocyte non Classical Monocyte HGNC:3619, HGNC:4947 DOI:10.1101/2021.07.28.454201|DOI:10.3389/fimmu.2019.02035|DOI:10.1126/science.aat5031|DOI:10.1172/jci.insight.133267|DOI:10.1126/science.aat5031 Kidney +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0000876 splenic white pulp macrophage Macrophages HGNC:1631, HGNC:1690, HGNC:1693, HGNC:613 DOI:10.1111/imm.12469|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0004041 spleen primary B follicle Primary Follicle CL:0000876 splenic white pulp macrophage Macrophage HGNC:1690, HGNC:1693, HGNC:613 DOI:10.1111/imm.12469|DOI:10.1007/s00418-011-0799-x|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0005196 spleen germinal center Germinal Center CL:0000877 splenic tingible body macrophage Tingible Body Macrophage HGNC:1690, HGNC:1693, HGNC:613 DOI:10.1007/s00418-011-0799-x|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0002124 medulla of thymus medulla of thymus CL:0000882 thymic medullary macrophage macrophage HGNC:10044, HGNC:10751, HGNC:1241, HGNC:1242, HGNC:1245, HGNC:13378, HGNC:1631, HGNC:1641, HGNC:1693, HGNC:18628, HGNC:5344, HGNC:613, HGNC:6149, HGNC:6152, HGNC:6740, HGNC:9472 DOI:10.1126/science.aay3224|DOI:10.1016/j.imbio.2008.07.032|DOI:10.1016/s0065-2776(08)60900-1 Thymus +UBERON:0006936 thymus subcapsular epithelium thymus subcapsular epithelium CL:0000883 thymic cortical macrophage macrophage HGNC:10044, HGNC:10751, HGNC:10909, HGNC:11881, HGNC:1241, HGNC:1242, HGNC:1245, HGNC:13378, HGNC:18628, HGNC:613, HGNC:9472 DOI:10.1016/s0065-2776(08)60900-1 Thymus +UBERON:0005463 subcapsular sinus of lymph node Subcapsular Sinus CL:0000887 lymph node subcapsular sinus macrophage Macrophage HGNC:11127, HGNC:1628, HGNC:1628, HGNC:1631, HGNC:1641, HGNC:1678, HGNC:1678, HGNC:1693, HGNC:4947, HGNC:6152, HGNC:6152, HGNC:7228 DOI:10.1182/blood-2008-06-165266|DOI:10.1097/01.pas.0000157940.80538.ec|DOI:10.1053/j.semdp.2017.11.002|AngelCE,ChenCJ,HorlacherOC,WinklerS,JohnT,BrowningJ,MacGregorD,CebonJ,DunbarPR|Distinctivelocalizationofantigen-presentingcellsinhumanlymphnodes|Blood|2009Feb5;1136:1257-67|doi:10|1182/blood-2008-06-165266|Epub2008Nov5|PMID:18987360;PMCID:PMC2687552||NguyenTT,SchwartzEJ,WestRB,WarnkeRA,ArberDA,NatkunamY|ExpressionofCD163hemoglobinscavengerreceptorinnormaltissues,lymphomas,carcinomas,andsarcomasislargelyrestrictedtothemonocyte/macrophagelineage|AmJSurgPathol|2005May;295:617-24|doi:10|1097/01|pas|0000157940|80538|ec|PMID:15832085||EganC,JaffeES|Non-neoplastichistiocyticanddendriticcelldisordersinlymphnodes|SeminDiagnPathol|2018Jan;351:20-33|doi:10|1053/j|semdp|2017|11|002|Epub2017Nov3|PMID:29150219;PMCID:PMC5803315| Lymph_node +UBERON:8410052 lymph node germinal center light zone Light Zone CL:0000888 lymph node tingible body macrophage Tingible Body Macrophage HGNC:11127, HGNC:11219, HGNC:1628, HGNC:1678, HGNC:1693, HGNC:4947, HGNC:6149, HGNC:6152 DOI:10.1111/cas.13137|KomoharaY,OhnishiK,TakeyaM|PossiblefunctionsofCD169-positivesinusmacrophagesinlymphnodesinanti-tumorimmuneresponses|CancerSci|2017Mar;1083:290-295|doi:10|1111/cas|13137|Epub2017Mar7|PMID:28002629;PMCID:PMC5378284| Lymph_node +UBERON:8410075 lymph node paracortical cord Paracortical Cord CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell Naive CD4+ T cell HGNC:10720, HGNC:1608, HGNC:1608, HGNC:1653, HGNC:1673, HGNC:1675, HGNC:1678, HGNC:1706, HGNC:9666 DOI:10.4049/jimmunol.1701025|NoDOI|KunickiMA,AmayaHernandezLC,DavisKL,BacchettaR,RoncaroloMG|IdentityandDiversityofHumanPeripheralThandTRegulatoryCellsDefinedbySingle-CellMassCytometry|JImmunol|2018Jan1;2001:336-346|doi:10|4049/jimmunol|1701025|Epub2017Nov27|PMID:29180490| Lymph_node +UBERON:8410067 lymph node interfollicular cortex Interfollicular Cortex CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell Naive CD4+ T cell HGNC:10720, HGNC:1608, HGNC:1608, HGNC:1653, HGNC:1673, HGNC:1675, HGNC:1678, HGNC:1706, HGNC:9666 DOI:10.4049/jimmunol.1701025|NoDOI|KunickiMA,AmayaHernandezLC,DavisKL,BacchettaR,RoncaroloMG|IdentityandDiversityofHumanPeripheralThandTRegulatoryCellsDefinedbySingle-CellMassCytometry|JImmunol|2018Jan1;2001:336-346|doi:10|4049/jimmunol|1701025|Epub2017Nov27|PMID:29180490| Lymph_node +UBERON:0002405 immune system immune system of respiratory tract CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell naive thymus-derived CD4-positive, alpha-beta T cell HGNC:1608, HGNC:1608, HGNC:1674, HGNC:1674, HGNC:1678, HGNC:1686, HGNC:2252, HGNC:6024, HGNC:6024, HGNC:6551, HGNC:9666, HGNC:9666 Lung +UBERON:0000178 Blood Blood CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell CD4 naive HGNC:11935, HGNC:12029, HGNC:12156, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:30698, HGNC:6024, HGNC:636, HGNC:6711, HGNC:9666 Blood +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell Naive CD4+ T Cell HGNC:1674, HGNC:1674, HGNC:1678, HGNC:1678, HGNC:1706, HGNC:1706, HGNC:9666 DOI:10.1126/sciimmunol.aau6085|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0002371 Bone marrow Bone marrow CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell CD4 naive HGNC:11935, HGNC:12029, HGNC:12156, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:30698, HGNC:6024, HGNC:636, HGNC:6711, HGNC:9666 Bone-Marrow +UBERON:0002371 Bone marrow Bone marrow CL:0000897 CD4-positive, alpha-beta memory T cell CD4 T cell memory HGNC:12029, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:2360, HGNC:26974, HGNC:4054, HGNC:537, HGNC:6563, HGNC:9666 Bone-Marrow +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0000897 CD4-positive, alpha-beta memory T cell CD4+ Memory T Cell HGNC:11922, HGNC:1674, HGNC:1674, HGNC:1678, HGNC:1678, HGNC:1706, HGNC:9666 DOI:10.1111/j.1365-2362.2006.01626.x|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0002371 Bone marrow Bone marrow CL:0000897 CD4-positive, alpha-beta memory T cell CD4 T cell memory HGNC:11362, HGNC:11892, HGNC:12029, HGNC:12729, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:19129, HGNC:19383, HGNC:6001, HGNC:6015, HGNC:6817, HGNC:7849, HGNC:8109, HGNC:9666, HGNC:9721 Bone-Marrow +UBERON:8410067 lymph node interfollicular cortex Interfollicular Cortex CL:0000897 CD4-positive, alpha-beta memory T cell Memory CD4+ T cell HGNC:16647, HGNC:1673, HGNC:1675, HGNC:1678, HGNC:1706, HGNC:6134, HGNC:9666 DOI:10.4049/jimmunol.1701025|NoDOI|KunickiMA,AmayaHernandezLC,DavisKL,BacchettaR,RoncaroloMG|IdentityandDiversityofHumanPeripheralThandTRegulatoryCellsDefinedbySingle-CellMassCytometry|JImmunol|2018Jan1;2001:336-346|doi:10|4049/jimmunol|1701025|Epub2017Nov27|PMID:29180490| Lymph_node +UBERON:0002124 medulla of thymus medulla of thymus CL:0000897 CD4-positive, alpha-beta memory T cell CD4+ T memory T cell HGNC:10359, HGNC:1608, HGNC:1694, HGNC:20369, HGNC:3128, HGNC:533, HGNC:570, HGNC:6024, HGNC:6347, HGNC:6711 DOI:10.1126/science.aay3224 Thymus +UBERON:0000178 Blood Blood CL:0000897 CD4-positive, alpha-beta memory T cell CD4 T cell memory HGNC:11362, HGNC:11892, HGNC:12029, HGNC:12729, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:19129, HGNC:19383, HGNC:6001, HGNC:6015, HGNC:6817, HGNC:7849, HGNC:8109, HGNC:9666, HGNC:9721 multi_loc +UBERON:0000178 Blood Blood CL:0000897 CD4-positive, alpha-beta memory T cell CD4 T cell memory HGNC:12029, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:2360, HGNC:26974, HGNC:4054, HGNC:537, HGNC:6563, HGNC:9666 multi_loc +UBERON:0000178 Blood Blood CL:0000897 CD4-positive, alpha-beta memory T cell CD4 T cell memory HGNC:1608, HGNC:16647, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:2360, HGNC:26974, HGNC:4709, HGNC:6134, HGNC:9360, HGNC:9666 multi_loc +UBERON:0000178 Blood Blood CL:0000897 CD4-positive, alpha-beta memory T cell CD4 T cell memory HGNC:12029, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:2360, HGNC:26974, HGNC:4054, HGNC:537, HGNC:6563, HGNC:9666 Blood +UBERON:0000178 Blood Blood CL:0000897 CD4-positive, alpha-beta memory T cell CD4 T cell memory HGNC:11362, HGNC:11892, HGNC:12029, HGNC:12729, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:19129, HGNC:19383, HGNC:6001, HGNC:6015, HGNC:6817, HGNC:7849, HGNC:8109, HGNC:9666, HGNC:9721 Blood +UBERON:0000178 Blood Blood CL:0000897 CD4-positive, alpha-beta memory T cell CD4 T cell memory HGNC:1608, HGNC:16647, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:2360, HGNC:26974, HGNC:4709, HGNC:6134, HGNC:9360, HGNC:9666 Blood +UBERON:0002371 Bone marrow Bone marrow CL:0000897 CD4-positive, alpha-beta memory T cell CD4 T cell memory HGNC:11362, HGNC:11892, HGNC:12029, HGNC:12729, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:19129, HGNC:19383, HGNC:6001, HGNC:6015, HGNC:6817, HGNC:7849, HGNC:8109, HGNC:9666, HGNC:9721 multi_loc +UBERON:0002371 Bone marrow Bone marrow CL:0000897 CD4-positive, alpha-beta memory T cell CD4 T cell memory HGNC:12029, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:2360, HGNC:26974, HGNC:4054, HGNC:537, HGNC:6563, HGNC:9666 multi_loc +UBERON:8410075 lymph node paracortical cord Paracortical Cord CL:0000897 CD4-positive, alpha-beta memory T cell Memory CD4+ T cell HGNC:16647, HGNC:1673, HGNC:1675, HGNC:1678, HGNC:1706, HGNC:6134, HGNC:9666 DOI:10.4049/jimmunol.1701025|NoDOI|KunickiMA,AmayaHernandezLC,DavisKL,BacchettaR,RoncaroloMG|IdentityandDiversityofHumanPeripheralThandTRegulatoryCellsDefinedbySingle-CellMassCytometry|JImmunol|2018Jan1;2001:336-346|doi:10|4049/jimmunol|1701025|Epub2017Nov27|PMID:29180490| Lymph_node +UBERON:8410075 lymph node paracortical cord Paracortical Cord CL:0000899 T-helper 17 cell Th17 cell HGNC:10260, HGNC:1607, HGNC:1607, HGNC:1673, HGNC:1675, HGNC:1678, HGNC:1706, HGNC:5361, HGNC:6024, HGNC:6373 DOI:10.4049/jimmunol.1701025|NoDOI|KunickiMA,AmayaHernandezLC,DavisKL,BacchettaR,RoncaroloMG|IdentityandDiversityofHumanPeripheralThandTRegulatoryCellsDefinedbySingle-CellMassCytometry|JImmunol|2018Jan1;2001:336-346|doi:10|4049/jimmunol|1701025|Epub2017Nov27|PMID:29180490| Lymph_node +UBERON:8410067 lymph node interfollicular cortex Interfollicular Cortex CL:0000899 T-helper 17 cell Th17 cell HGNC:10260, HGNC:1607, HGNC:1607, HGNC:1673, HGNC:1675, HGNC:1678, HGNC:1706, HGNC:5361, HGNC:6024, HGNC:6373 DOI:10.4049/jimmunol.1701025|NoDOI|KunickiMA,AmayaHernandezLC,DavisKL,BacchettaR,RoncaroloMG|IdentityandDiversityofHumanPeripheralThandTRegulatoryCellsDefinedbySingle-CellMassCytometry|JImmunol|2018Jan1;2001:336-346|doi:10|4049/jimmunol|1701025|Epub2017Nov27|PMID:29180490| Lymph_node +UBERON:0002124 medulla of thymus medulla of thymus CL:0000899 T-helper 17 cell Th17 cell HGNC:11185, HGNC:11935, HGNC:12930, HGNC:1678, HGNC:17150, HGNC:17946, HGNC:19254, HGNC:533, HGNC:6024, HGNC:6373, HGNC:6373 DOI:10.1126/science.aay3224|DOI:10.1084/jem.20080397 Thymus +UBERON:0002371 Bone marrow Bone marrow CL:0000900 naive thymus-derived CD8-positive, alpha-beta T cell CD8 naive HGNC:12029, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:6024, HGNC:636, HGNC:9666 Bone-Marrow +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0000900 naive thymus-derived CD8-positive, alpha-beta T cell Naive CD8+ T Cell HGNC:1674, HGNC:1674, HGNC:1678, HGNC:1678, HGNC:1706, HGNC:1706, HGNC:9666 DOI:10.1126/sciimmunol.aau6085|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:8410067 lymph node interfollicular cortex Interfollicular Cortex CL:0000900 naive thymus-derived CD8-positive, alpha-beta T cell Naive CD8+ T cell HGNC:10720, HGNC:1608, HGNC:1608, HGNC:1653, HGNC:1673, HGNC:1675, HGNC:1678, HGNC:1706, HGNC:1706, HGNC:9666 NoDOI Lymph_node +UBERON:0000178 Blood Blood CL:0000900 naive thymus-derived CD8-positive, alpha-beta T cell CD8 naive HGNC:12029, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:6024, HGNC:636, HGNC:9666 Blood +UBERON:8410075 lymph node paracortical cord Paracortical Cord CL:0000900 naive thymus-derived CD8-positive, alpha-beta T cell Naive CD8+ T cell HGNC:10720, HGNC:1608, HGNC:1608, HGNC:1653, HGNC:1673, HGNC:1675, HGNC:1678, HGNC:1706, HGNC:1706, HGNC:9666 DOI:10.1002/cyto.a.20643|AppayV,vanLierRA,SallustoF,RoedererM|PhenotypeandfunctionofhumanTlymphocytesubsets:consensusandissues|CytometryA|2008Nov;7311:975-83|doi:10|1002/cyto|a|20643|PMID:18785267| Lymph_node +UBERON:0002405 immune system immune system of respiratory tract CL:0000900 naive thymus-derived CD8-positive, alpha-beta T cell naive thymus-derived CD8-positive, alpha-beta T cell HGNC:1608, HGNC:1608, HGNC:1674, HGNC:1674, HGNC:1686, HGNC:1706, HGNC:1707, HGNC:1707, HGNC:17493, HGNC:2252, HGNC:6024, HGNC:6024, HGNC:7553, HGNC:9666, HGNC:9666 Lung +UBERON:0002405 immune system immune system of respiratory tract CL:0000905 effector memory CD4-positive, alpha-beta T cell effector memory CD4-positive, alpha-beta T cell HGNC:1674, HGNC:1674, HGNC:1674, HGNC:1678, HGNC:1678, HGNC:1686, HGNC:2252, HGNC:6024, HGNC:9666, HGNC:9666 Lung +UBERON:8410075 lymph node paracortical cord Paracortical Cord CL:0000909 CD8-positive, alpha-beta memory T cell Memory CD8+ T cell HGNC:16647, HGNC:1673, HGNC:1675, HGNC:1678, HGNC:1706, HGNC:1706, HGNC:6134, HGNC:9666 DOI:10.1002/cyto.a.20643|AppayV,vanLierRA,SallustoF,RoedererM|PhenotypeandfunctionofhumanTlymphocytesubsets:consensusandissues|CytometryA|2008Nov;7311:975-83|doi:10|1002/cyto|a|20643|PMID:18785267| Lymph_node +UBERON:8410067 lymph node interfollicular cortex Interfollicular Cortex CL:0000909 CD8-positive, alpha-beta memory T cell Memory CD8+ T cell HGNC:16647, HGNC:1673, HGNC:1675, HGNC:1678, HGNC:1706, HGNC:1706, HGNC:6134, HGNC:9666 NoDOI Lymph_node +UBERON:0002371 Bone marrow Bone marrow CL:0000909 CD8-positive, alpha-beta memory T cell CD8 T cell memory HGNC:1608, HGNC:16647, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:2360, HGNC:26974, HGNC:4709, HGNC:6134, HGNC:9360, HGNC:9666 Bone-Marrow +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0000909 CD8-positive, alpha-beta memory T cell Non-Cytotoxic CD8+ Memory T Cell HGNC:11922, HGNC:1674, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:1706, HGNC:9666 DOI:10.1111/j.1365-2362.2006.01626.x|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0001266 splenic cord Splenic Cord CL:0000909 CD8-positive, alpha-beta memory T cell Memory CD8+ T Cell HGNC:1674, HGNC:1674, HGNC:1678, HGNC:1678, HGNC:1706, HGNC:1706, HGNC:9666 DOI:10.1126/sciimmunol.aau6085|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0002124 medulla of thymus medulla of thymus CL:0000909 CD8-positive, alpha-beta memory T cell CD8+ T memory HGNC:10630, HGNC:10632, HGNC:1706, HGNC:1707, HGNC:20369, HGNC:24313, HGNC:2479, HGNC:26021, HGNC:4711, HGNC:7830 DOI:10.1126/science.aay3224 Thymus +UBERON:0002337 endometrial stroma endometrial stroma CL:0000910 cytotoxic T cell cytotoxic T cell HGNC:1653, HGNC:1706 PMID:1672332|PMID:7579453|PMID:1672332|PMID:7579453 Placenta +UBERON:0002072 hypodermis Subcutaneous CL:0000910 cytotoxic T cell T killer HGNC:1673, HGNC:1706 DOI:10.1111/1523-1747.ep12470172|DOI:10.1111/1523-1747.ep12470172|DOI:10.1111/1523-1747.ep12470172|PMID:3494791|PMID:3494791|PMID:3494791 Skin +UBERON:0001961 mucosa-associated lymphoid tissue dermal skin-associated lymphoid tissue CL:0000910 cytotoxic T cell T killer HGNC:1673, HGNC:1673, HGNC:1706, HGNC:1706 NoDOI multi_loc +UBERON:0002067 dermis Dermis CL:0000910 cytotoxic T cell T killer HGNC:1673, HGNC:1706 DOI:10.1111/1523-1747.ep12470172|DOI:10.1111/1523-1747.ep12470172|DOI:10.1111/1523-1747.ep12470172|PMID:3494791|PMID:3494791|PMID:3494791 Skin +UBERON:0001961 mucosa-associated lymphoid tissue dermal skin-associated lymphoid tissue CL:0000910 cytotoxic T cell T killer HGNC:1673, HGNC:1673, HGNC:1706, HGNC:1706 NoDOI Large_intestine +UBERON:0005215 kidney interstitium Interstitium CL:0000910 cytotoxic T cell Cytotoxic T Cell HGNC:10630, HGNC:10632, HGNC:4708 DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|PMID:31249312|PMCID:PMC6597610 Kidney +UBERON:8410067 lymph node interfollicular cortex Interfollicular Cortex CL:0000910 cytotoxic T cell T Cytotoxic Cell HGNC:11802, HGNC:1673, HGNC:1675, HGNC:1706, HGNC:1706, HGNC:4709, HGNC:4709, HGNC:4711, HGNC:9360 NODOI|HsuSM,JaffeES|PhenotypicexpressionofTlymphocytesinthymusandperipherallymphoidtissues|AmJPathol|1985Oct;1211:69-78|PMID:3931482;PMCID:PMC1888042| Lymph_node +UBERON:8410075 lymph node paracortical cord Paracortical Cord CL:0000910 cytotoxic T cell T Cytotoxic Cell HGNC:11802, HGNC:1673, HGNC:1675, HGNC:1706, HGNC:1706, HGNC:4709, HGNC:4709, HGNC:4711, HGNC:9360 DOI:10.1002/cyto.a.20643|AppayV,vanLierRA,SallustoF,RoedererM|PhenotypeandfunctionofhumanTlymphocytesubsets:consensusandissues|CytometryA|2008Nov;7311:975-83|doi:10|1002/cyto|a|20643|PMID:18785267| Lymph_node +UBERON:0001961 mucosa-associated lymphoid tissue subcutaneous skin-associated lymphoid tissue CL:0000910 cytotoxic T cell T killer HGNC:1673, HGNC:1673, HGNC:1678, HGNC:1678, HGNC:6106, HGNC:6106 NoDOI multi_loc +UBERON:0001961 mucosa-associated lymphoid tissue subcutaneous skin-associated lymphoid tissue CL:0000910 cytotoxic T cell T killer HGNC:1673, HGNC:1673, HGNC:1678, HGNC:1678, HGNC:6106, HGNC:6106 NoDOI Large_intestine +UBERON:0002405 immune system immune system of respiratory tract CL:0000913 effector memory CD8-positive, alpha-beta T cell effector memory CD8-positive, alpha-beta T cell HGNC:1673, HGNC:1674, HGNC:1674, HGNC:1674, HGNC:1686, HGNC:1706, HGNC:1706, HGNC:1707, HGNC:2252, HGNC:9666, HGNC:9666 Lung +UBERON:0002371 Bone marrow Bone marrow CL:0000913 effector memory CD8-positive, alpha-beta T cell CD8 T cell effector memory HGNC:10627, HGNC:10630, HGNC:12029, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:24961, HGNC:4709, HGNC:9666 Bone-Marrow +UBERON:0002124 medulla of thymus medulla of thymus CL:0000914 immature NKT cell immature NKT cell HGNC:10632, HGNC:10645, HGNC:10720, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:21574, HGNC:21872, HGNC:2479, HGNC:4711, HGNC:4712, HGNC:5438, HGNC:6014, HGNC:6024, HGNC:6373, HGNC:6477, HGNC:7830, HGNC:9666 DOI:10.1126/science.aay3224|DOI:10.1111/cei.12045|DOI:10.1002/eji.200425958 Thymus +UBERON:0005636 caecum epithelium epithelium CL:0000915 CD8-alpha-alpha-positive, alpha-beta intraepithelial T cell surface intraepithelial CD8+ alpha alpha positive alpha/beta lymphocyte HGNC:1639, HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695, HGNC:1706, HGNC:1706 DOI:10.1093/intimm/7.9.1473|PMID:7495755 Large_intestine +UBERON:0000397 colonic epithelium lymphocyte CL:0000915 CD8-alpha-alpha-positive, alpha-beta intraepithelial T cell surface intraepithelial CD8+ alph alpha positive alpha/beta lymphocyte HGNC:1639, HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695, HGNC:1706, HGNC:1706 DOI:10.1093/intimm/7.9.1473|PMID:7495755 Large_intestine +UBERON:0004647 liver lobule hepatic Lobule CL:0000921 Type I NK T cell iNKT HGNC:12046, HGNC:12053, HGNC:12104, HGNC:1637, HGNC:16647 Liver +UBERON:0002124 medulla of thymus medulla of thymus CL:0000934 CD4-positive, alpha-beta cytotoxic T cell cytotoxic CD4 T cell HGNC:13253, HGNC:13432, HGNC:17362, HGNC:2479, HGNC:3070, HGNC:4708, HGNC:4711, HGNC:5962, HGNC:9346, HGNC:9991 DOI:10.1126/science.aay3224 Thymus +UBERON:0000397 colonic epithelium lymphocyte CL:0000935 CD4-negative, CD8-negative, alpha-beta intraepithelial T cell surface intraepithelial CD4-CD8- lymphocyte alpha/beta HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695, HGNC:1695 DOI:10.1093/intimm/7.9.1473|PMID:7495755 multi_loc +UBERON:0000397 colonic epithelium epithelium CL:0000935 CD4-negative, CD8-negative, alpha-beta intraepithelial T cell surface intraepithelial CD4-CD8- lymphocyte alpha/beta HGNC:1639, HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:921 DOI:10.1093/intimm/7.9.1473|PMID:7495755 multi_loc +UBERON:0000397 colonic epithelium lymphocyte CL:0000935 CD4-negative, CD8-negative, alpha-beta intraepithelial T cell surface intraepithelial CD4-CD8- lymphocyte alpha/beta HGNC:1639, HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695 DOI:10.1093/intimm/7.9.1473|PMID:7495755 multi_loc +UBERON:0000397 colonic epithelium epithelium CL:0000935 CD4-negative, CD8-negative, alpha-beta intraepithelial T cell surface intraepithelial CD4-CD8- lymphocyte alpha/beta HGNC:1639, HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:921 DOI:10.1093/intimm/7.9.1473|PMID:7495755 Large_intestine +UBERON:0000397 colonic epithelium lymphocyte CL:0000935 CD4-negative, CD8-negative, alpha-beta intraepithelial T cell surface intraepithelial CD4-CD8- lymphocyte alpha/beta HGNC:1639, HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695 DOI:10.1093/intimm/7.9.1473|PMID:7495755 Large_intestine +UBERON:0000397 colonic epithelium lymphocyte CL:0000935 CD4-negative, CD8-negative, alpha-beta intraepithelial T cell surface intraepithelial CD4-CD8- lymphocyte alpha/beta HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695, HGNC:1695 DOI:10.1093/intimm/7.9.1473|PMID:7495755 Large_intestine +UBERON:0002371 Bone marrow Bone marrow CL:0000936 early lymphoid progenitor lympho-myeloid progenitor cell HGNC:11200, HGNC:11491, HGNC:13221, HGNC:1628, HGNC:1633, HGNC:1639, HGNC:1662, HGNC:1662, HGNC:1667, HGNC:1674, HGNC:3619, HGNC:4702, HGNC:5713, HGNC:6010, HGNC:7656, HGNC:9666 DOI:10.1038/ni.1889 Bone-Marrow +UBERON:0002405 immune system immune system of respiratory tract CL:0000938 CD16-negative, CD56-bright natural killer cell, human NK CD56bright HGNC:10645, HGNC:10646, HGNC:1686, HGNC:2252, HGNC:24045, HGNC:6024, HGNC:7656, HGNC:7656, HGNC:9666, HGNC:9666 Lung +UBERON:0000178 Blood Blood CL:0000938 CD16-negative, CD56-bright natural killer cell, human CD56 bright Natural killer HGNC:10645, HGNC:12253, HGNC:1633, HGNC:1674, HGNC:2064, HGNC:2479, HGNC:3619, HGNC:4711, HGNC:6373, HGNC:7315, HGNC:7656 Blood +UBERON:0002371 Bone marrow Bone marrow CL:0000938 CD16-negative, CD56-bright natural killer cell, human CD56 bright Natural Killer HGNC:10645, HGNC:12253, HGNC:1633, HGNC:1674, HGNC:2064, HGNC:2479, HGNC:3619, HGNC:4711, HGNC:6373, HGNC:7315, HGNC:7656, HGNC:921 Bone-Marrow +UBERON:0002124 medulla of thymus medulla of thymus CL:0000940 mucosal invariant T cell mucosal associated invariant T cell HGNC:10260, HGNC:11922, HGNC:12930, HGNC:1678, HGNC:1706, HGNC:5988, HGNC:6373 DOI:10.1038/ni.3565. Thymus +UBERON:0002405 immune system immune system of respiratory tract CL:0000940 mucosal invariant T cell mucosal invariant T cell HGNC:1674, HGNC:1674, HGNC:1686, HGNC:2252, HGNC:6024, HGNC:6373, HGNC:6380, HGNC:9360, HGNC:9666, HGNC:9666 Lung +UBERON:0002124 medulla of thymus medulla of thymus CL:0000942 thymic plasmacytoid dendritic cell plasmacytoid dendritic cell HGNC:12524, HGNC:13258, HGNC:15503, HGNC:1659, HGNC:18111, HGNC:19254, HGNC:23792, HGNC:4709, HGNC:500, HGNC:5358, HGNC:5713, HGNC:6012, HGNC:6012, HGNC:6122, HGNC:6152, HGNC:9666 DOI:10.1126/science.aay3224|DOI:10.1172/JCI11734|DOI:10.1182/blood-2008-11-187633 Thymus +UBERON:0002123 cortex of thymus cortex of thymus CL:0000942 thymic plasmacytoid dendritic cell plasmacytoid dendritic cell HGNC:12524, HGNC:13258, HGNC:15503, HGNC:1659, HGNC:18111, HGNC:19254, HGNC:23792, HGNC:31963, HGNC:4709, HGNC:500, HGNC:5358, HGNC:5713, HGNC:6012, HGNC:6012, HGNC:6122, HGNC:6152, HGNC:9666 DOI:10.1126/science.aay3224|DOI:10.1172/JCI11734.|DOI:10.1182/blood-2008-11-187633 Thymus +UBERON:0003988 thymus corticomedullary boundary corticomedullary boundary of thymus CL:0000970 unswitched memory B cell memory B cell HGNC:11922, HGNC:1633, HGNC:16837, HGNC:18153, HGNC:18233, HGNC:206, HGNC:2360, HGNC:3128, HGNC:4942, HGNC:4947, HGNC:5478, HGNC:5541, HGNC:7315, HGNC:7315 DOI:10.1126/science.aay3224|DOI:10.1126/sciimmunol.aah4447|DOI:10.1080/01926230600865549|PearseG|Normalstructure,functionandhistologyofthethymus|ToxicolPathol|2006;34(5):504-14|doi:10|1080/01926230600865549|PMID:17067941| Thymus +UBERON:0013132 Penicillar Arteriole Penicillar Arteriole CL:0000972 class switched memory B cell Switched B Cell HGNC:1633, HGNC:1698, HGNC:7315, HGNC:7315 DOI:10.1007/s00418-013-1172-z|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0003988 thymus corticomedullary boundary corticomedullary boundary of thymus CL:0000972 class switched memory B cell memory B cell HGNC:11922, HGNC:1633, HGNC:16837, HGNC:18153, HGNC:18233, HGNC:206, HGNC:2360, HGNC:3128, HGNC:4942, HGNC:4947, HGNC:5478, HGNC:7315, HGNC:7315 DOI:10.1126/science.aay3224|DOI:10.1126/sciimmunol.aah4447|DOI:10.1080/01926230600865549|PearseG|Normalstructure,functionandhistologyofthethymus|ToxicolPathol|2006;34(5):504-14|doi:10|1080/01926230600865549|PMID:17067941| Thymus +UBERON:0001250 red pulp of spleen Red Pulp CL:0000972 class switched memory B cell Switched B Cell HGNC:1633, HGNC:1698, HGNC:7315, HGNC:7315 DOI:10.1007/s00418-013-1172-z|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0001251 Marginal Zone of Spleen Superficial Zone CL:0000972 class switched memory B cell Switched B Cell HGNC:11922, HGNC:1633, HGNC:1698, HGNC:5480, HGNC:5541, HGNC:7315, HGNC:7315 DOI:10.1007/s00418-013-1172-z|DOI:10.1007/s00418-020-01924-3|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:8410052 lymph node germinal center light zone Light Zone CL:0000980 plasmablast Plasmablast HGNC:10658, HGNC:10658, HGNC:11922, HGNC:1667, HGNC:1667, HGNC:1698, HGNC:2561, HGNC:6119, HGNC:6119, HGNC:7315, HGNC:9346 NoDOI Lymph_node +UBERON:0001266 splenic cord Splenic Cord CL:0000980 plasmablast Plasmablast HGNC:10658, HGNC:10658, HGNC:11922, HGNC:12801, HGNC:1667, HGNC:1698, HGNC:2561, HGNC:5525, HGNC:5541, HGNC:5713, HGNC:6119, HGNC:7315 NoDOI|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0000980 plasmablast Plasmablast HGNC:10658, HGNC:10658, HGNC:11922, HGNC:12801, HGNC:1667, HGNC:1698, HGNC:2561, HGNC:5525, HGNC:5541, HGNC:5541, HGNC:5713, HGNC:6119, HGNC:7315 NoDOI|DOI:10.1002/eji.200425442|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0009745 lymph node medullary cord Medullary Cord CL:0000980 plasmablast Plasmablast HGNC:10658, HGNC:10658, HGNC:1667, HGNC:1667, HGNC:1698, HGNC:2561, HGNC:6119, HGNC:6119, HGNC:7315, HGNC:9346 NoDOI Lymph_node +UBERON:0003988 thymus corticomedullary boundary corticomedullary boundary of thymus CL:0000980 plasmablast plasmablast HGNC:11922, HGNC:1633, HGNC:6119 DOI:10.1126/science.aay3224|DOI:10.1080/01926230600865549|PearseG|Normalstructure,functionandhistologyofthethymus|ToxicolPathol|2006;34(5):504-14|doi:10|1080/01926230600865549|PMID:17067941| Thymus +UBERON:0005196 spleen germinal center Germinal Center CL:0000980 plasmablast Plasmablast HGNC:10658, HGNC:10658, HGNC:11922, HGNC:12801, HGNC:1667, HGNC:1698, HGNC:2561, HGNC:5525, HGNC:5541, HGNC:5713, HGNC:6119, HGNC:7315 NoDOI|DOI:10.1002/eji.200425442|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0005215 kidney interstitium Interstitium CL:0000990 conventional dendritic cell Dendritic Cell (classical) HGNC:26705, HGNC:3765, HGNC:6152 DOI:10.1101/2021.07.28.454201|DOI:10.1084/jem.20030323|DOI:10.1126/science.aat5031 Kidney +UBERON:0002371 Bone marrow Bone marrow CL:0000990 conventional dendritic cell dendritic cell type 2 HGNC:11784, HGNC:1628, HGNC:1633, HGNC:1636, HGNC:1636, HGNC:1674, HGNC:16916, HGNC:3609, HGNC:3618, HGNC:3619, HGNC:4940, HGNC:4943, HGNC:6012, HGNC:6152, HGNC:7656 DOI:10.1016/j.immuni.2017.04.019 multi_loc +UBERON:0002371 Bone marrow Bone marrow CL:0000990 conventional dendritic cell dendritic cell type 2 HGNC:11784, HGNC:1628, HGNC:1633, HGNC:1636, HGNC:1636, HGNC:1674, HGNC:16916, HGNC:3609, HGNC:3618, HGNC:3619, HGNC:4940, HGNC:4943, HGNC:6012, HGNC:6152, HGNC:7656 DOI:10.1016/j.immuni.2017.04.019 Bone-Marrow +UBERON:0002371 Bone marrow Bone marrow CL:0000990 conventional dendritic cell dendritic cell type 1 HGNC:11784, HGNC:1625, HGNC:1628, HGNC:1633, HGNC:1636, HGNC:1674, HGNC:26705, HGNC:3619, HGNC:5951, HGNC:6012, HGNC:6152, HGNC:7656 DOI:10.3109/10428194.2013.781167 Bone-Marrow +UBERON:0002371 Bone marrow Bone marrow CL:0000990 conventional dendritic cell dendritic cell type 1 HGNC:11784, HGNC:1625, HGNC:1628, HGNC:1633, HGNC:1636, HGNC:1674, HGNC:26705, HGNC:3619, HGNC:5951, HGNC:6012, HGNC:6152, HGNC:7656 DOI:10.3109/10428194.2013.781167 multi_loc +UBERON:0004647 liver lobule hepatic Lobule CL:0000990 conventional dendritic cell Conventional DC 1 HGNC:11784 DOI:10.1111/imm.12888|PMID:29313948 Liver +UBERON:0002067 dermis Dermis CL:0001006 dermal dendritic cell Dendritic cell (DC1) HGNC:6147, HGNC:6149 DOI:10.1016/j.jdermsci.2014.08.012|DOI:10.1111/j.0105-2896.2009.00874.x|DOI:10.4049/jimmunol.1701056|PMID:25301671|PMID:20193025||PMID:29158419| Skin +UBERON:0000178 Blood Blood CL:0001050 effector CD8-positive, alpha-beta T cell CD8 T cell effector memory HGNC:10627, HGNC:10630, HGNC:12029, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:24961, HGNC:4709, HGNC:9666 Blood +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0001050 effector CD8-positive, alpha-beta T cell CD8+ T Cell HGNC:1674, HGNC:1674, HGNC:1678, HGNC:1678, HGNC:1706, HGNC:1706 DOI:10.1126/sciimmunol.aau6085|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0000178 Blood Blood CL:0001054 CD14-positive monocyte CD14 monocyte HGNC:10498, HGNC:10499, HGNC:10720, HGNC:1603, HGNC:1628, HGNC:1628, HGNC:1633, HGNC:1663, HGNC:1674, HGNC:2464, HGNC:2475, HGNC:3613, HGNC:3619, HGNC:3623, HGNC:6152, HGNC:7656 Blood +UBERON:0002371 Bone marrow Bone marrow CL:0001054 CD14-positive monocyte CD14 monocyte HGNC:10498, HGNC:10499, HGNC:1628, HGNC:1628, HGNC:1633, HGNC:1674, HGNC:2464, HGNC:2475, HGNC:2558, HGNC:2561, HGNC:3619, HGNC:3623, HGNC:7656 Bone-Marrow +UBERON:0001266 splenic cord Splenic Cord CL:0001055 CD14-positive, CD16-low monocyte Monocytes HGNC:1628, HGNC:1628, HGNC:2464, HGNC:3613, HGNC:3619, HGNC:3623, HGNC:6149 DOI:10.1182/bloodadvances.2017015008|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0005353 spleen perifollicular zone Perifollicular Zone CL:0001055 CD14-positive, CD16-low monocyte Monocytes HGNC:1628, HGNC:1628, HGNC:2464, HGNC:3613, HGNC:3619, HGNC:3623, HGNC:6149 DOI:10.1182/bloodadvances.2017015008|DOI:10.3389/fimmu.2019.01642|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0002371 Bone marrow Bone marrow CL:0001056 dendritic cell, human dendritic cell type 3 HGNC:10498, HGNC:10499, HGNC:13258, HGNC:1628, HGNC:1631, HGNC:1633, HGNC:1636, HGNC:1663, HGNC:1674, HGNC:16916, HGNC:3609, HGNC:3619, HGNC:6012, HGNC:6152, HGNC:7656 DOI:10.1002/cyto.a.23724 Bone-Marrow +UBERON:0004647 liver lobule hepatic Lobule CL:0001056 human Dendritic cell conventional Dendritic cell HGNC:1697, HGNC:2433, HGNC:3336, HGNC:3613, HGNC:3765, HGNC:6152 DOI:10.1111/imm.12888|PMID:29313948 Liver +UBERON:0006566 left ventricle myocardium myocardium CL:0001056 dendritic cell, human dendritic cell HGNC:6147, HGNC:6149, HGNC:6152, HGNC:6729 Heart +UBERON:0001266 splenic cord Splenic Cord CL:0001056 dendritic cell, human Dendritic Cell HGNC:6152 NoDOI Spleen +UBERON:0005215 kidney interstitium Interstitium CL:0001056 dendritic cell, human Dendritic Cell (general) HGNC:1636, HGNC:1638, HGNC:3609, HGNC:4947, HGNC:613 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41586-020-2941-1|DOI:10.1126/science.aat5031|PMID:31249312|PMCID:PMC6597610 Kidney +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0001058 plasmacytoid dendritic cell, human Plasmacytoid Dendritic Cell HGNC:13258, HGNC:13258, HGNC:6012, HGNC:6012, HGNC:6152, HGNC:8004 DOI:10.4049/jimmunol.1002632|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0001251 Marginal Zone of Spleen Superficial Zone CL:0001058 plasmacytoid dendritic cell, human Plasmacytoid Dendritic Cell HGNC:13258, HGNC:13258, HGNC:6012, HGNC:6012, HGNC:6152, HGNC:8004 DOI:10.4049/jimmunol.1002632|DOI:10.1111/imm.12469|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0005215 kidney interstitium Interstitium CL:0001058 plasmacytoid dendritic cell, human Dendritic Cell (plasmatoid) HGNC:3765, HGNC:6012 DOI:10.1101/2021.07.28.454201|DOI:10.1038/s41467-019-10861-2 Kidney +UBERON:0002371 Bone marrow Bone marrow CL:0001058 plasmacytoid dendritic cell, human Plasmacytoid Dendritic Cell HGNC:10875, HGNC:1628, HGNC:1633, HGNC:1674, HGNC:3619, HGNC:4709, HGNC:5713, HGNC:6012, HGNC:6152, HGNC:7656, HGNC:8824, HGNC:905 DOI:10.1111/bjh.14467 Bone-Marrow +UBERON:0000178 Blood Blood CL:0001058 plasmacytoid dendritic cell, human Plasmacytoid Dendritic Cell (pDC) HGNC:13258, HGNC:1628, HGNC:1633, HGNC:1674, HGNC:3619, HGNC:4709, HGNC:4947, HGNC:5713, HGNC:6012, HGNC:6152, HGNC:7656, HGNC:8824 DOI:10.1111/bjh.14467 Blood +UBERON:8410075 lymph node paracortical cord Paracortical Cord CL:0001058 plasmacytoid dendritic cell, human Plasmacytoid Dendritic Cell HGNC:11634, HGNC:13258, HGNC:13258, HGNC:4709, HGNC:5713, HGNC:6012, HGNC:6012, HGNC:6152, HGNC:9666 DOI:10.1016/S0002-94401061694-X|DOI:10.1097/pap.0b013e3181bb6bc2|SummersKL,HockBD,McKenzieJL,HartDN|Phenotypiccharacterizationoffivedendriticcellsubsetsinhumantonsils|AmJPathol|2001Jul;1591:285-95|doi:10|1016/S0002-94401061694-X|PMID:11438475;PMCID:PMC1850402||JegalianAG,FacchettiF,JaffeES|Plasmacytoiddendriticcells:physiologicrolesandpathologicstates|AdvAnatPathol|2009Nov;166:392-404|doi:10|1097/PAP|0b013e3181bb6bc2|PMID:19851130;PMCID:PMC6329307| Lymph_node +UBERON:0005353 spleen perifollicular zone Perifollicular Zone CL:0001058 plasmacytoid dendritic cell, human Plasmacytoid Dendritic Cell HGNC:13258, HGNC:13258, HGNC:6012, HGNC:6012, HGNC:6152, HGNC:8004 DOI:10.4049/jimmunol.1002632|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0002371 Bone marrow Bone marrow CL:0001062 effector memory CD8-positive, alpha-beta T cell, terminally differentiated CD8 T cell effector memory CD45RA HGNC:10632, HGNC:10720, HGNC:11922, HGNC:12029, HGNC:1608, HGNC:1667, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:24961, HGNC:4414, HGNC:5411, HGNC:6378, HGNC:7830, HGNC:9360, HGNC:9666 Bone-Marrow +UBERON:0000178 Blood Blood CL:0001062 effector memory CD8-positive, alpha-beta T cell, terminally differentiated CD8 T cell effector memory CD45RA HGNC:10632, HGNC:12029, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:24961, HGNC:4414, HGNC:5411, HGNC:6378, HGNC:7830, HGNC:9360, HGNC:9666 Blood +UBERON:0002067 dermis Dermis CL:0001067 group 1 innate lymphoid cell Natural killer cell / Innate lymphoid cell 1 HGNC:11599, HGNC:1673, HGNC:7656 DOI:10.1126/science.aaa6566|DOI:10.1126/science.aaa6566|DOI:10.1126/science.aaa6566|PMID:25999512;|PMID:25999512;|PMID:25999512; Skin +UBERON:0002067 dermis Dermis CL:0001069 group 2 innate lymphoid cell Innate lymphoid cell 2 HGNC:1673, HGNC:4172, HGNC:7656 DOI:10.1038/ni.2584|DOI:10.1126/science.aaa6566|DOI:10.1126/science.aaa6566|PMID:23603794|PMID:25999512;|PMID:25999512; Skin +UBERON:0001013 adipose tissue adipose tissue CL:0001070 beige adipocyte beige adipocyte HGNC:11592 DOI:10.3389/fendo.2019.00369|DOI:10.1007/s11357-013-9564-5 Thymus +UBERON:0003988 thymus corticomedullary boundary corticomedullary boundary of thymus CL:0001070 beige adipocyte beige adipocyte HGNC:11592 DOI:10.3389/fendo.2019.00369|DOI:10.1007/s11357-013-9564-5 Thymus +UBERON:0002067 dermis Dermis CL:0001071 group 3 innate lymphoid cell Innate lymphoid cell 3 HGNC:10260, HGNC:1673, HGNC:7656 DOI:10.1038/ncomms11394|DOI:10.1126/science.aaa6566|DOI:10.1126/science.aaa6566|DOI:10.1038/ncomms11394|PMID:27099134|PMID:25999512;|PMID:25999512;|PMID:27099134 Skin +UBERON:0001251 Marginal Zone of Spleen Superficial Zone CL:0001078 group 3 innate lymphoid cell, human Innate Lymphoid Cell (Type 3) HGNC:10260, HGNC:16892, HGNC:348, HGNC:5361, HGNC:6024, HGNC:6342, HGNC:6373, HGNC:6732, HGNC:7656 DOI:10.1038/ni.2830|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0002124 medulla of thymus medulla of thymus CL:0001078 group 3 innate lymphoid cell, human group 3 innate lymphoid cell HGNC:10494, HGNC:12253, HGNC:14189, HGNC:1804, HGNC:19084, HGNC:28324, HGNC:6024, HGNC:6024, HGNC:6342, HGNC:6373, HGNC:6373, HGNC:6463, HGNC:6711, HGNC:6732 DOI:10.1126/science.aay3224|DOI:10.3389/fimmu.2017.01047 Thymus +UBERON:0002371 Bone marrow Bone marrow CL:0001087 effector memory CD4-positive, alpha-beta T cell, terminally differentiated CD4 T cell effector memory CD45RA HGNC:11362, HGNC:11892, HGNC:12029, HGNC:12729, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:19129, HGNC:19383, HGNC:6001, HGNC:6015, HGNC:6817, HGNC:7849, HGNC:8109, HGNC:9666, HGNC:9721 Bone-Marrow +UBERON:0000178 Blood Blood CL:0001087 effector memory CD4-positive, alpha-beta T cell, terminally differentiated CD4 T cell effector memory CD45RA HGNC:11362, HGNC:11892, HGNC:12029, HGNC:12729, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:19129, HGNC:19383, HGNC:6001, HGNC:6015, HGNC:6817, HGNC:7849, HGNC:8109, HGNC:9666, HGNC:9721 Blood +UBERON:0004647 liver lobule hepatic Lobule CL:0001203 CD8 positiver alpha beta memory T cell CD45RO + CD8+ Liver-Resident Memory T cell HGNC:10720, HGNC:1608, HGNC:16647, HGNC:3165, HGNC:4540, HGNC:6347 Liver +UBERON:0005196 spleen germinal center Germinal Center CL:0002038 T follicular helper cell T Follicular Helper Cell HGNC:1060, HGNC:1060, HGNC:1673, HGNC:1678, HGNC:1694, HGNC:5351, HGNC:5351, HGNC:8760, HGNC:8760 DOI:10.1182/blood-2014-03-563445|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0002124 medulla of thymus medulla of thymus CL:0002038 T follicular helper cell T follicular helper cell HGNC:1594, HGNC:18683, HGNC:19829, HGNC:24944, HGNC:30881, HGNC:3766, HGNC:3797, HGNC:6024, HGNC:7717, HGNC:7981 DOI:10.1126/science.aay3224 Thymus +UBERON:8410052 lymph node germinal center light zone Light Zone CL:0002038 T follicular helper cell T Follicular Helper Cell HGNC:1060, HGNC:1060, HGNC:11935, HGNC:1673, HGNC:1675, HGNC:1678, HGNC:1678, HGNC:1694, HGNC:5351, HGNC:6776, HGNC:8760, HGNC:8760, HGNC:921 DOI:10.1016/j.immuni.2013.08.031|DOI:10.1097/01.pas.0000209855.28282.ce|LocciM,Havenar-DaughtonC,LandaisE,WuJ,KroenkeMA,ArlehamnCL,SuLF,CubasR,DavisMM,SetteA,HaddadEK;InternationalAIDSVaccineInitiativeProtocolCPrincipalInvestigators,PoignardP,CrottyS|HumancirculatingPD-1+CXCR3-CXCR5+memoryTfhcellsarehighlyfunctionalandcorrelatewithbroadlyneutralizingHIVantibodyresponses|Immunity|2013Oct17;394:758-69|doi:10|1016/j|immuni|2013|08|031|Epub2013Sep12|PMID:24035365;PMCID:PMC3996844||DorfmanDM,BrownJA,ShahsafaeiA,FreemanGJ|Programmeddeath-1PD-1isamarkerofgerminalcenter-associatedTcellsandangioimmunoblasticT-celllymphoma|AmJSurgPathol|2006Jul;307:802-10|doi:10|1097/01|pas|0000209855|28282|ce|PMID:16819321;PMCID:PMC3137919| Lymph_node +UBERON:0000055 vessel vessel CL:0002042 immature NK T cell stage IV lymphatic endothelium HGNC:29602, HGNC:29602, HGNC:8823, HGNC:8823 NoDOI Large_intestine +UBERON:0003988 thymus corticomedullary boundary corticomedullary boundary of thymus CL:0002059 CD8alpha-positive thymic conventional dendritic cell conventional dendritic cell 1 HGNC:11784, HGNC:14399, HGNC:1625, HGNC:1659, HGNC:1678, HGNC:1703, HGNC:20369, HGNC:26258, HGNC:26705, HGNC:28915, HGNC:2959, HGNC:4938, HGNC:5358, HGNC:6149, HGNC:6152, HGNC:6562, HGNC:6740, HGNC:9662, HGNC:9666 DOI:10.1126/science.aay3224|DOI:10.1172/JCI11734|DOI:10.1038/cti.2015.21 Thymus +UBERON:0002124 medulla of thymus medulla of thymus CL:0002059 CD8alpha-positive thymic conventional dendritic cell conventional dendritic cell 1 HGNC:11784, HGNC:14399, HGNC:1625, HGNC:1659, HGNC:1678, HGNC:1703, HGNC:20369, HGNC:26258, HGNC:26705, HGNC:28915, HGNC:2959, HGNC:4938, HGNC:5358, HGNC:6149, HGNC:6152, HGNC:6562, HGNC:6740, HGNC:9662, HGNC:9666 DOI:10.1126/science.aay3224|DOI:10.1172/JCI11734|DOI:10.1038/cti.2015.21 Thymus +UBERON:0002299 alveolus of lung alveolus of lung on respiratory bronchiole CL:0002062 type I pneumocyte alveolar type I cell HGNC:10573, HGNC:10724, HGNC:11529, HGNC:13517, HGNC:1748, HGNC:18386, HGNC:19364, HGNC:20862, HGNC:24961, HGNC:24961, HGNC:27287, HGNC:320, HGNC:320, HGNC:3318, HGNC:4027, HGNC:637, HGNC:6412 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 Lung +UBERON:0002173 pulmonary alveolar duct pulmonary alveolar duct CL:0002062 type I pneumocyte alveolar type I cell HGNC:10573, HGNC:10724, HGNC:11529, HGNC:13517, HGNC:1748, HGNC:18386, HGNC:19364, HGNC:20862, HGNC:24961, HGNC:24961, HGNC:27287, HGNC:320, HGNC:320, HGNC:3318, HGNC:4027, HGNC:637, HGNC:6412 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 Lung +UBERON:0008870 pulmonary alveolar parenchyma pulmonary alveolar parenchyma CL:0002062 type I pneumocyte alveolar type I cell HGNC:10573, HGNC:10724, HGNC:11529, HGNC:13517, HGNC:1748, HGNC:18386, HGNC:19364, HGNC:20862, HGNC:24961, HGNC:24961, HGNC:27287, HGNC:320, HGNC:320, HGNC:3318, HGNC:4027, HGNC:637, HGNC:6412 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 Lung +UBERON:0002173 pulmonary alveolar duct pulmonary alveolar duct CL:0002063 type II pneumocyte alveolar type II cell HGNC:1067, HGNC:10799, HGNC:10802, HGNC:11529, HGNC:14582, HGNC:1748, HGNC:18386, HGNC:20862, HGNC:24961, HGNC:25897, HGNC:33, HGNC:33, HGNC:3318, HGNC:4027, HGNC:6412 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 Lung +UBERON:0008870 pulmonary alveolar parenchyma pulmonary alveolar parenchyma CL:0002063 type II pneumocyte alveolar type II cell HGNC:1067, HGNC:10799, HGNC:10802, HGNC:11529, HGNC:14582, HGNC:1748, HGNC:18386, HGNC:20862, HGNC:24961, HGNC:25897, HGNC:33, HGNC:33, HGNC:3318, HGNC:4027, HGNC:6412 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 Lung +UBERON:0002299 alveolus of lung alveolus of lung on respiratory bronchiole CL:0002063 type II pneumocyte alveolar type II cell HGNC:1067, HGNC:10799, HGNC:10802, HGNC:11529, HGNC:14582, HGNC:1748, HGNC:18386, HGNC:20862, HGNC:24961, HGNC:25897, HGNC:33, HGNC:33, HGNC:3318, HGNC:4027, HGNC:6412 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 Lung +UBERON:0001263 Pancreatic acinus Pancreatic acinus CL:0002064 pancreatic acinar cell Acinar cell HGNC:15944, HGNC:2521, HGNC:477, HGNC:6430, HGNC:6446, HGNC:9475 Pancreas +UBERON:0022281 epithelium of crypt of Lieberkuhn of large intestine epithelium CL:0002071 enterocyte of epithelium of large intestine absorptive HGNC:17106, HGNC:17106, HGNC:20412, HGNC:20412 DOI:10.1038/s42003-020-01181-z|PMID:32814826PMCID:PMC7438495 Large_intestine +UBERON:0000397 colonic epithelium epithelium CL:0002071 enterocyte of epithelium of large intestine absorptive HGNC:17106, HGNC:17106, HGNC:20412, HGNC:20412 DOI:10.1038/s42003-020-01181-z|PMID:32814826PMCID:PMC7438495 Large_intestine +UBERON:0011184 epithelium of crypt of Lieberkuhn epithelium CL:0002071 enterocyte of epithelium of large intestine absorptive HGNC:17106, HGNC:17106, HGNC:20412, HGNC:20412 DOI:10.1038/s42003-020-01181-z|PMID:32814826PMCID:PMC7438495 Large_intestine +UBERON:0014726 intercalated duct of pancreas Intercalated duct CL:0002079 pancreatic ductal cell Ductal cell HGNC:14188, HGNC:17890 Pancreas +UBERON:0014726 intercalated duct of pancreas Intercalated duct CL:0002080 pancreatic centro-acinar cell Centroacinar cell HGNC:1373 Pancreas +UBERON:0002439 myenteric nerve plexus myenteric plexus of Auerbach CL:0002088 interstitial cell of Cajal interstitial cell of Cajal HGNC:1662, HGNC:1662, HGNC:6342, HGNC:6342 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 Large_intestine +UBERON:0003331 submucosa of colon submucosa CL:0002088 interstitial cell of Cajal interstitial cell of Cajal HGNC:1662, HGNC:1662, HGNC:6342, HGNC:6342 DOI:10.1007/978-1-4939-0897-4_3|DOI:10.1152/ajpgi.00432.2011|PMID:24997029|PMID:22421617PMCID:PMC3362097 Large_intestine +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0002138 endothelial cell of lymphatic vessel Lymphatic Endothelium Cell HGNC:12726, HGNC:14687, HGNC:29602, HGNC:29602, HGNC:8823, HGNC:9459 DOI:10.1369%2Fjhc.4A6514.2005|NoDOI|GarrafaE,TraininiL,BenettiA,SabaE,FezzardiL,LorussoB,BorghettiP,BottioT,CeriE,PortolaniN,BonardlliS,GiuliniSM,AnnibaleG,CorradiA,ImbertiL,CarusoA|Isolation,purification,andheterogeneityofhumanlymphaticendothelialcellsfromdifferenttissues|Lymphology|2005Dec;38(4):159-66|PMID:16515224| Spleen +UBERON:0035279 supraclavicular lymph node supraclavicular lymph node CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelial cell HGNC:3767 Lymph_vasculature +UBERON:0015881 internal iliac lymph node internal iliac lymph node CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelial cell HGNC:3767 Lymph_vasculature +UBERON:0001543 popliteal lymph node popliteal lymph node CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelial cell HGNC:3767 Lymph_vasculature +UBERON:0003329 submucosa of anal canal submucosa CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelium HGNC:29602, HGNC:29602, HGNC:8823, HGNC:8823 NoDOI Large_intestine +UBERON:0005742 adventitia adventitia CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelium HGNC:29602, HGNC:29602, HGNC:8823, HGNC:8823 NoDOI Large_intestine +UBERON:0011189 lamina propria of large intestine lamina propria CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelium HGNC:29602, HGNC:29602, HGNC:8823, HGNC:8823 DOI:10.1111/j.1440-1827.1989.tb02421.x|DOI:10.1034/j.1600-065x.2003.00072.x|PMID:2618659|PMID:12969318 Large_intestine +UBERON:0012375 subserosa subserosa CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelium HGNC:29602, HGNC:29602, HGNC:8823, HGNC:8823 NoDOI Large_intestine +UBERON:0012398 large intestine smooth muscle circular layer circular muscle layer CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelium HGNC:29602, HGNC:29602, HGNC:8823, HGNC:8823 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 Large_intestine +UBERON:0007178 muscularis mucosae of colon muscularis mucosa CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelium HGNC:29602, HGNC:29602, HGNC:8823, HGNC:8823 NoDOI Large_intestine +UBERON:0004927 submucosa of cecum submucosa CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelium HGNC:29602, HGNC:29602, HGNC:8823, HGNC:8823 NoDOI Large_intestine +UBERON:0007177 lamina propria of mucosa of colon lamina propria CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelium HGNC:29602, HGNC:29602, HGNC:8823, HGNC:8823 DOI:10.1111/j.1440-1827.1989.tb02421.x|DOI:10.1034/j.1600-065x.2003.00072.x|PMID:2618659|PMID:12969318 Large_intestine +UBERON:0001631 thoracic duct thoracic duct CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelial cell HGNC:3767 Lymph_vasculature +UBERON:0005435 upper part of cisterna chyli cisterna chyli CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelial cell HGNC:3767 Lymph_vasculature +UBERON:0002508 celiac lymph node celiac lymph node CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelial cell HGNC:3767 Lymph_vasculature +UBERON:0016378 ileocolic lymph node ileocolic lymph node CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelial cell HGNC:3767 Lymph_vasculature +UBERON:0010397 efferent lymphatic vessel Efferent Lymphatics CL:0002138 endothelial cell of lymphatic vessel Lymphatic Endothelial Cell HGNC:11924, HGNC:14687, HGNC:1527, HGNC:1527, HGNC:1611, HGNC:1611, HGNC:29602, HGNC:6895, HGNC:7035, HGNC:8021, HGNC:8021, HGNC:8051, HGNC:8514, HGNC:8823, HGNC:9459, HGNC:9666 DOI:10.3389/fcvm.2020.00052|DOI:10.1016/j.immuni.2019.06.027|XiangM,GrossoRA,TakedaA,PanJ,BekkhusT,BruloisK,DermadiD,NordlingS,VanlandewijckM,JalkanenS,UlvmarMH,ButcherEC|ASingle-CellTranscriptionalRoadmapoftheMouseandHumanLymphNodeLymphaticVasculature|FrontCardiovascMed|2020Apr30;7:52|doi:10|3389/fcvm|2020|00052|PMID:32426372;PMCID:PMC7204639||TakedaA,HollménM,DermadiD,PanJ,BruloisKF,KaukonenR,LönnbergT,BoströmP,KoskivuoI,IrjalaH,MiyasakaM,SalmiM,ButcherEC,JalkanenS|Single-CellSurveyofHumanLymphaticsUnveilsMarkedEndothelialCellHeterogeneityandMechanismsofHomingforNeutrophils|Immunity|2019Sep17;513:561-572|e5|doi:10|1016/j|immuni|2019|06|027|Epub2019Aug8|PMID:31402260| multi_loc +UBERON:0001473 lymphatic vessel Lymphatic Vessels CL:0002138 endothelial cell of lymphatic vessel Endothelial Cell of Lymphatic Vessel HGNC:11924, HGNC:14687, HGNC:1527, HGNC:1527, HGNC:1611, HGNC:1611, HGNC:29602, HGNC:6895, HGNC:7035, HGNC:8021, HGNC:8021, HGNC:8051, HGNC:8514, HGNC:8823, HGNC:9459, HGNC:9666 DOI:10.3389/fcvm.2020.00052|DOI:10.1016/j.immuni.2019.06.027|XiangM,GrossoRA,TakedaA,PanJ,BekkhusT,BruloisK,DermadiD,NordlingS,VanlandewijckM,JalkanenS,UlvmarMH,ButcherEC|ASingle-CellTranscriptionalRoadmapoftheMouseandHumanLymphNodeLymphaticVasculature|FrontCardiovascMed|2020Apr30;7:52|doi:10|3389/fcvm|2020|00052|PMID:32426372;PMCID:PMC7204639||TakedaA,HollménM,DermadiD,PanJ,BruloisKF,KaukonenR,LönnbergT,BoströmP,KoskivuoI,IrjalaH,MiyasakaM,SalmiM,ButcherEC,JalkanenS|Single-CellSurveyofHumanLymphaticsUnveilsMarkedEndothelialCellHeterogeneityandMechanismsofHomingforNeutrophils|Immunity|2019Sep17;513:561-572|e5|doi:10|1016/j|immuni|2019|06|027|Epub2019Aug8|PMID:31402260| multi_loc +UBERON:0010397 efferent lymphatic vessel efferent lymphatic CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelial cell HGNC:10620, HGNC:10690, HGNC:11757, HGNC:11760, HGNC:14687, HGNC:29612, HGNC:29990, HGNC:3560, HGNC:7178, HGNC:8038, HGNC:9459, HGNC:9459 DOI:10.1126/science.aay3224|DOI:10.1080/01926230600865549|PearseG|Normalstructure,functionandhistologyofthethymus|ToxicolPathol|2006;34(5):504-14|doi:10|1080/01926230600865549|PMID:17067941| multi_loc +UBERON:0001473 lymphatic vessel Lymphatic Vessels CL:0002138 endothelial cell of lymphatic vessel Lymphatic Endothelium Cell HGNC:12726, HGNC:14687, HGNC:29602, HGNC:29602, HGNC:8823, HGNC:9459 DOI:10.1369/jhc.4A6514.2005|NoDOI|GarrafaE,TraininiL,BenettiA,SabaE,FezzardiL,LorussoB,BorghettiP,BottioT,CeriE,PortolaniN,BonardlliS,GiuliniSM,AnnibaleG,CorradiA,ImbertiL,CarusoA|Isolation,purification,andheterogeneityofhumanlymphaticendothelialcellsfromdifferenttissues|Lymphology|2005Dec;38(4):159-66|PMID:16515224| multi_loc +UBERON:0002067 dermis Dermis CL:0002138 endothelial cell of lymphatic vessel Lymphatic HGNC:14687, HGNC:29602 DOI:10.1046/j.1087-0024.2000.00001.x|DOI:10.3389/fimmu.2012.00283|DOI:10.1038/jid.2013.481|PMID:11147669||PMID:22988448|PMID:24352044 Skin +UBERON:0002072 hypodermis Subcutaneous CL:0002138 endothelial cell of lymphatic vessel Lymphatic HGNC:14687, HGNC:29602 DOI:10.1046/j.1087-0024.2000.00001.x|DOI:10.3389/fimmu.2012.00283|DOI:10.1038/jid.2013.481|PMID:11147669||PMID:22988448|PMID:24352044 Skin +UBERON:0002509 mesenteric lymph node mesenteric lymph node CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelial cell HGNC:3767 Lymph_vasculature +UBERON:0016402 mesocolic lymph node mesocolic lymph node CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelial cell HGNC:3767 Lymph_vasculature +UBERON:0016386 paraaortic lymph node paraaortic lymph node CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelial cell HGNC:3767 Lymph_vasculature +UBERON:0015878 common iliac lymph node common iliac lymph node CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelial cell HGNC:3767 Lymph_vasculature +UBERON:0015880 external iliac lymph node external iliac lymph node CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelial cell HGNC:3767 Lymph_vasculature +UBERON:0012399 large intestine smooth muscle longitudinal layer longitudinal muscle layer CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelium HGNC:29602, HGNC:29602, HGNC:8823, HGNC:8823 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 Large_intestine +UBERON:0003331 submucosa of colon submucosa CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelium HGNC:29602, HGNC:29602, HGNC:8823, HGNC:8823 NoDOI Large_intestine +UBERON:0009006 deep inguinal lymph node deep inguinal lymph node CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelial cell HGNC:3767 Lymph_vasculature +UBERON:0002439 myenteric nerve plexus myenteric plexus of Auerbach CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelium HGNC:12513, HGNC:12513, HGNC:17635, HGNC:17635, HGNC:7656, HGNC:7656 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 Large_intestine +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/Isolated lymphoid follicles (ILF) CL:0002138 endothelial cell of lymphatic vessel ILF lymphatic endothelium HGNC:14687, HGNC:14687 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 Large_intestine +UBERON:0002042 lymphatic vessel endothelium Endothelium (non glomerular) CL:0002138 endothelial cell of lymphatic vessel Lymphatic Endothelial Cell HGNC:11592, HGNC:7178, HGNC:8823, HGNC:9459 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|DOI:10.1038/s41586-020-2941-1|DOI:10.1038/s41467-019-12872-5|PMID:31249312|PMCID:PMC6597610 Kidney +UBERON:0001473 lymphatic vessel Lymphatic Vessels CL:0002138 endothelial cell of lymphatic vessel Lymphatic Endothelium Cell HGNC:12726, HGNC:14687, HGNC:29602, HGNC:29602, HGNC:8823, HGNC:9459 DOI:10.1369/jhc.4A6514.2005|NoDOI|GarrafaE,TraininiL,BenettiA,SabaE,FezzardiL,LorussoB,BorghettiP,BottioT,CeriE,PortolaniN,BonardlliS,GiuliniSM,AnnibaleG,CorradiA,ImbertiL,CarusoA|Isolation,purification,andheterogeneityofhumanlymphaticendothelialcellsfromdifferenttissues|Lymphology|2005Dec;38(4):159-66|PMID:16515224| Spleen +UBERON:0002450 decidua decidua CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelial cell HGNC:29602, HGNC:8823 doi.org/10.1371/journal.pone.0169849|doi.org/10.1371/journal.pone.0169849|doi.org/10.1371/journal.pone.0169849 Placenta +UBERON:0001959 white pulp of spleen White Pulp CL:0002138 endothelial cell of lymphatic vessel Lymphatic Endothelium Cell HGNC:12726, HGNC:14687, HGNC:29602, HGNC:29602, HGNC:8823, HGNC:9459 DOI:10.1369/jhc.4A6514.2005|NoDOI|GarrafaE,TraininiL,BenettiA,SabaE,FezzardiL,LorussoB,BorghettiP,BottioT,CeriE,PortolaniN,BonardlliS,GiuliniSM,AnnibaleG,CorradiA,ImbertiL,CarusoA|Isolation,purification,andheterogeneityofhumanlymphaticendothelialcellsfromdifferenttissues|Lymphology|2005Dec;38(4):159-66|PMID:16515224| Spleen +UBERON:0010397 efferent lymphatic vessel efferent lymphatic CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelial cell HGNC:10620, HGNC:10690, HGNC:11757, HGNC:11760, HGNC:14687, HGNC:29612, HGNC:29990, HGNC:3560, HGNC:7178, HGNC:8038, HGNC:9459, HGNC:9459 DOI:10.1126/science.aay3224|DOI:10.1080/01926230600865549|PearseG|Normalstructure,functionandhistologyofthethymus|ToxicolPathol|2006;34(5):504-14|doi:10|1080/01926230600865549|PMID:17067941| Thymus +UBERON:0010397 efferent lymphatic vessel Efferent Lymphatics CL:0002138 endothelial cell of lymphatic vessel Lymphatic Endothelial Cell HGNC:11924, HGNC:14687, HGNC:1527, HGNC:1527, HGNC:1611, HGNC:1611, HGNC:29602, HGNC:6895, HGNC:7035, HGNC:8021, HGNC:8021, HGNC:8051, HGNC:8514, HGNC:8823, HGNC:9459, HGNC:9666 DOI:10.3389/fcvm.2020.00052|DOI:10.1016/j.immuni.2019.06.027|XiangM,GrossoRA,TakedaA,PanJ,BekkhusT,BruloisK,DermadiD,NordlingS,VanlandewijckM,JalkanenS,UlvmarMH,ButcherEC|ASingle-CellTranscriptionalRoadmapoftheMouseandHumanLymphNodeLymphaticVasculature|FrontCardiovascMed|2020Apr30;7:52|doi:10|3389/fcvm|2020|00052|PMID:32426372;PMCID:PMC7204639||TakedaA,HollménM,DermadiD,PanJ,BruloisKF,KaukonenR,LönnbergT,BoströmP,KoskivuoI,IrjalaH,MiyasakaM,SalmiM,ButcherEC,JalkanenS|Single-CellSurveyofHumanLymphaticsUnveilsMarkedEndothelialCellHeterogeneityandMechanismsofHomingforNeutrophils|Immunity|2019Sep17;513:561-572|e5|doi:10|1016/j|immuni|2019|06|027|Epub2019Aug8|PMID:31402260| Lymph_node +UBERON:0009744 lymph node medullary sinus Medullary Sinus CL:0002138 endothelial cell of lymphatic vessel Lymphatic Endothelial Cell HGNC:11924, HGNC:13523, HGNC:14687, HGNC:14687, HGNC:1527, HGNC:1611, HGNC:1641, HGNC:1641, HGNC:17635, HGNC:18629, HGNC:24591, HGNC:29602, HGNC:5344, HGNC:6895, HGNC:6895, HGNC:7035, HGNC:8021, HGNC:8514, HGNC:8823, HGNC:9459, HGNC:9666 DOI:10.3389/fcvm.2020.00052|DOI:10.1016/j.immuni.2019.06.027|XiangM,GrossoRA,TakedaA,PanJ,BekkhusT,BruloisK,DermadiD,NordlingS,VanlandewijckM,JalkanenS,UlvmarMH,ButcherEC|ASingle-CellTranscriptionalRoadmapoftheMouseandHumanLymphNodeLymphaticVasculature|FrontCardiovascMed|2020Apr30;7:52|doi:10|3389/fcvm|2020|00052|PMID:32426372;PMCID:PMC7204639||TakedaA,HollménM,DermadiD,PanJ,BruloisKF,KaukonenR,LönnbergT,BoströmP,KoskivuoI,IrjalaH,MiyasakaM,SalmiM,ButcherEC,JalkanenS|Single-CellSurveyofHumanLymphaticsUnveilsMarkedEndothelialCellHeterogeneityandMechanismsofHomingforNeutrophils|Immunity|2019Sep17;513:561-572|e5|doi:10|1016/j|immuni|2019|06|027|Epub2019Aug8|PMID:31402260| Lymph_node +UBERON:8410074 lymph node paracortical sinus Paracortical Sinus CL:0002138 endothelial cell of lymphatic vessel Lymphatic Endothelial Cell HGNC:11924, HGNC:13523, HGNC:14687, HGNC:14687, HGNC:1527, HGNC:1611, HGNC:1641, HGNC:1641, HGNC:17635, HGNC:18629, HGNC:24591, HGNC:29602, HGNC:5344, HGNC:6895, HGNC:6895, HGNC:7035, HGNC:8021, HGNC:8514, HGNC:8823, HGNC:9459, HGNC:9666 DOI:10.3389/fcvm.2020.00052|DOI:10.1016/j.immuni.2019.06.027|XiangM,GrossoRA,TakedaA,PanJ,BekkhusT,BruloisK,DermadiD,NordlingS,VanlandewijckM,JalkanenS,UlvmarMH,ButcherEC|ASingle-CellTranscriptionalRoadmapoftheMouseandHumanLymphNodeLymphaticVasculature|FrontCardiovascMed|2020Apr30;7:52|doi:10|3389/fcvm|2020|00052|PMID:32426372;PMCID:PMC7204639||TakedaA,HollménM,DermadiD,PanJ,BruloisKF,KaukonenR,LönnbergT,BoströmP,KoskivuoI,IrjalaH,MiyasakaM,SalmiM,ButcherEC,JalkanenS|Single-CellSurveyofHumanLymphaticsUnveilsMarkedEndothelialCellHeterogeneityandMechanismsofHomingforNeutrophils|Immunity|2019Sep17;513:561-572|e5|doi:10|1016/j|immuni|2019|06|027|Epub2019Aug8|PMID:31402260| Lymph_node +UBERON:0001473 lymphatic vessel Lymphatic Vessels CL:0002138 endothelial cell of lymphatic vessel Endothelial Cell of Lymphatic Vessel HGNC:11924, HGNC:14687, HGNC:1527, HGNC:1527, HGNC:1611, HGNC:1611, HGNC:29602, HGNC:6895, HGNC:7035, HGNC:8021, HGNC:8021, HGNC:8051, HGNC:8514, HGNC:8823, HGNC:9459, HGNC:9666 DOI:10.3389/fcvm.2020.00052|DOI:10.1016/j.immuni.2019.06.027|XiangM,GrossoRA,TakedaA,PanJ,BekkhusT,BruloisK,DermadiD,NordlingS,VanlandewijckM,JalkanenS,UlvmarMH,ButcherEC|ASingle-CellTranscriptionalRoadmapoftheMouseandHumanLymphNodeLymphaticVasculature|FrontCardiovascMed|2020Apr30;7:52|doi:10|3389/fcvm|2020|00052|PMID:32426372;PMCID:PMC7204639||TakedaA,HollménM,DermadiD,PanJ,BruloisKF,KaukonenR,LönnbergT,BoströmP,KoskivuoI,IrjalaH,MiyasakaM,SalmiM,ButcherEC,JalkanenS|Single-CellSurveyofHumanLymphaticsUnveilsMarkedEndothelialCellHeterogeneityandMechanismsofHomingforNeutrophils|Immunity|2019Sep17;513:561-572|e5|doi:10|1016/j|immuni|2019|06|027|Epub2019Aug8|PMID:31402260| Lymph_node +UBERON:0003331 submucosa of colon submucosa CL:0002144 capillary endothelial cell capillary endothelium HGNC:1662, HGNC:1662, HGNC:1663, HGNC:1663, HGNC:8823, HGNC:8823 DOI:10.1111/j.1440-1827.1989.tb02421.x|DOI:10.1034/j.1600-065x.2003.00072.x|PMID:2618659|PMID:12969318 Large_intestine +UBERON:0007177 lamina propria of mucosa of colon lamina propria CL:0002144 capillary endothelial cell capillary endothelium HGNC:1662, HGNC:1662, HGNC:1663, HGNC:1663, HGNC:8823, HGNC:8823 DOI:10.1111/j.1440-1827.1989.tb02421.x|DOI:10.1034/j.1600-065x.2003.00072.x|PMID:2618659|PMID:12969318 Large_intestine +UBERON:0011189 lamina propria of large intestine lamina propria CL:0002144 capillary endothelial cell capillary endothelium HGNC:1662, HGNC:1662, HGNC:1663, HGNC:1663, HGNC:8823, HGNC:8823 DOI:10.1111/j.1440-1827.1989.tb02421.x|DOI:10.1034/j.1600-065x.2003.00072.x|PMID:2618659|PMID:12969318 Large_intestine +UBERON:0001982 capillary vasculature CL:0002144 capillary endothelial cell capillary endothelial cell HGNC:10001, HGNC:60, HGNC:6269 Heart +UBERON:0007178 muscularis mucosae of colon muscularis mucosa CL:0002144 capillary endothelial cell capillary endothelium HGNC:1662, HGNC:1662, HGNC:1663, HGNC:1663, HGNC:8823, HGNC:8823 NoDOI Large_intestine +UBERON:0002027 stratum corneum of epidermis Stratum corneum (SC) CL:0002153 corneocyte Keratinocyte (Corneocyte) HGNC:3748, HGNC:6187 DOI:10.1146/annurev.cb.11.110195.001011|DOI:10.1111/1523-1747.ep12298323|DOI:10.1021/bi00492a018|PMID:8689554||PMID:8752847|PMID:2248957 Skin +UBERON:0002371 Bone marrow Bone marrow CL:0002193 myelocyte myelocyte HGNC:11249, HGNC:1472, HGNC:1645, HGNC:1820, HGNC:1820, HGNC:3383, HGNC:4015, HGNC:500, HGNC:6140, HGNC:6149, HGNC:6526, HGNC:6720 Bone-Marrow +UBERON:0001282 intralobular bile duct Canals of Hering CL:0002196 Hepatic oval stem cell hepatic oval cell HGNC:11801, HGNC:6342 |DOI:10.1136/gut.2007.143321|DOI:10.1053/gast.2001.21175 multi_loc +UBERON:0001282 intralobular bile duct Canals of Hering CL:0002196 Hepatic oval stem cell hepatic progenitor cell HGNC:11204, HGNC:11529, HGNC:4504, HGNC:8148, HGNC:9454 DOI:10.1038/nature11826|DOI:10.1634/stemcells.2007-0176|DOI:10.1038/ng.722|DOI:10.1053/j.gastro.2012.08.024 multi_loc +UBERON:0001282 intralobular bile duct Canals of Hering CL:0002196 Hepatic oval stem cell hepatic oval cell HGNC:11801, HGNC:6342 |DOI:10.1136/gut.2007.143321|DOI:10.1053/gast.2001.21175 Liver +UBERON:0001282 intralobular bile duct Canals of Hering CL:0002196 Hepatic oval stem cell hepatic progenitor cell HGNC:11204, HGNC:11529, HGNC:4504, HGNC:8148, HGNC:9454 DOI:10.1038/nature11826|DOI:10.1634/stemcells.2007-0176|DOI:10.1038/ng.722|DOI:10.1053/j.gastro.2012.08.024 Liver +UBERON:0001232 collecting duct of renal tubule Collecting Duct CL:0002201 renal beta-intercalated cell Intercalated Cell Type B HGNC:11035, HGNC:8031, HGNC:8818 DOI:10.1038/s41467-019-10861-2|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|DOI:10.1126/science.aat1699|PMID:31249312|PMCID:PMC6597610|PMID:31689386 Kidney +UBERON:0002341 epithelium of segmental bronchus segmental bronchial epithelium CL:0002208 brush cell of bronchus tuft cell HGNC:11529, HGNC:14323, HGNC:14323, HGNC:1748, HGNC:19864, HGNC:19864, HGNC:20657, HGNC:2700, HGNC:2700, HGNC:3318, HGNC:4027, HGNC:739 Lung +UBERON:0001803 epithelium of lens epithelial layer CL:0002224 lens epithelial cell lens epithelial cell HGNC:1748 Eye +UBERON:0000390 lens nucleus Fetal nucleus CL:0002225 secondary lens fiber mature fiber cell HGNC:17494 Eye +UBERON:0002444 lens fiber lens Fibers CL:0002228 primary lens fiber primary lens fiber HGNC:1041 Eye +UBERON:0002337 endometrial stroma endometrial stroma CL:0002255 stromal cell of endometrium endometrial stromal cell HGNC:11801, HGNC:1681, HGNC:3349, HGNC:7154 doi:10.3390/cells1041061|doi:10.1016/j.jcyt.2017.03.001|doi:10.1186/s13287-017-0757-1|DOI:10.1095/biolreprod51.4.739|DOI:10.1095/biolreprod.108.075226|doi.org/10.1182/blood.V74.2.751.751|doi:10.3390/cells1041061|doi:10.5966/sctm.2015-0022|doi:10.3346/jkms.2012.27.8.857|doi:10.1016/j.jcyt.2017.03.001|doi:10.1186/s13287-017-0757-1|DOI:10.1093/humrep/den051|DOI:10.1095/biolreprod.108.075226|doi:10.3390/cells1041061|doi:10.5966/sctm.2015-0022|doi:10.3346/jkms.2012.27.8.857|doi:10.1016/j.jcyt.2017.03.001|doi:10.1186/s13287-017-0757-1|DOI:10.1095/biolreprod.108.075226|doi:10.1016/s1472-6483(10)61745-2 Placenta +UBERON:0000006 islet of Langerhans Islet of Langerhans CL:0002275 pancreatic PP cell PP cell HGNC:11506, HGNC:11506, HGNC:12513, HGNC:1929, HGNC:1929, HGNC:9327 Pancreas +UBERON:0002067 dermis Dermis CL:0002292 type I cell of carotid body Glomus cell HGNC:130, HGNC:3023 DOI:10.1016/j.cmet.2015.09.004|NoDOI|DOI:10.1016/j.acthis.2015.07.007|PMID:26437605||PMID:2158236|PMID:26272445 Skin +UBERON:0002072 hypodermis Subcutaneous CL:0002292 type I cell of carotid body Glomus cell HGNC:130, HGNC:3023 DOI:10.1016/j.cmet.2015.09.004|NoDOI|DOI:10.1016/j.acthis.2015.07.007|PMID:26437605||PMID:2158236|PMID:26272445 Skin +UBERON:0000055 vessel vessel CL:0002292 type I cell of carotid body glomus cell HGNC:130, HGNC:130, HGNC:3023, HGNC:3023 NoDOI Large_intestine +UBERON:0001778 ciliary epithelium ciliary epithelium CL:0002303 pigmented ciliary epithelial cell pigmented ciliary epithelial cell HGNC:799 DOI:10.3390/cell7110210 Eye +UBERON:0001778 ciliary epithelium ciliary epithelium CL:0002304 non-pigmented ciliary epithelial cell non-pigmented ciliary epithelial cell HGNC:633, HGNC:637, HGNC:800 DOI:10.3390/cell7110210 Eye +UBERON:0004134 proximal tubule proximal tubule CL:0002306 epithelial cell of proximal tubule Proximal Tubule Epithelial Cell HGNC:10916, HGNC:2548, HGNC:417, HGNC:4175, HGNC:6694, HGNC:6694 DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|DOI:10.1038/s41586-020-2941-1|DOI:10.1073/pnas.2005477117|DOI:10.1681/ASN.2020010071|PMID:31249312|PMCID:PMC6597610 Kidney +UBERON:0001335 prostatic urethra prostatic urethra CL:0002313 neuroendocrine cell of the prostatic urethral epithelium neuroendocrine cell of prostatic urethra HGNC:10575, HGNC:1929, HGNC:4605 doi:10.1002/path.5751 Prostate +UBERON:0002339 epithelium of lobar bronchus lobar bronchial epithelium CL:0002329 basal epithelial cell of tracheobronchial tree basal epithelial cell of tracheobronchial tree HGNC:11529, HGNC:12338, HGNC:15979, HGNC:15979, HGNC:1748, HGNC:20657, HGNC:3318, HGNC:4027, HGNC:6442, HGNC:6442, HGNC:7809 Lung +UBERON:0002341 epithelium of segmental bronchus segmental bronchial epithelium CL:0002329 basal epithelial cell of tracheobronchial tree basal epithelial cell of tracheobronchial tree HGNC:11529, HGNC:12338, HGNC:15979, HGNC:15979, HGNC:1748, HGNC:20657, HGNC:3318, HGNC:4027, HGNC:6442, HGNC:6442, HGNC:7809, HGNC:7809 Lung +UBERON:0002341 epithelium of segmental bronchus segmental bronchial epithelium CL:0002332 ciliated cell of the bronchus ciliated cell of the bronchus HGNC:11529, HGNC:12371, HGNC:15467, HGNC:1748, HGNC:20657, HGNC:20771, HGNC:26308, HGNC:3318, HGNC:34527, HGNC:3816, HGNC:3816, HGNC:4027 Lung +UBERON:0002339 epithelium of lobar bronchus lobar bronchial epithelium CL:0002332 ciliated cell of the bronchus ciliated cell of the bronchus HGNC:11529, HGNC:12371, HGNC:15467, HGNC:1748, HGNC:20657, HGNC:20771, HGNC:26308, HGNC:3318, HGNC:34527, HGNC:3816, HGNC:3816, HGNC:4027 Lung +UBERON:0002073 hair follicle Hair follicles CL:0002337 keratinocyte stem cell keratinocyte stem cell HGNC:1662, HGNC:6421 DOI:10.1002/jcp.22275|DOI:10.1038/labinvest.2009.48|DOI:10.1038/labinvest.2009.48|DOI:10.1038/labinvest.2009.48|PMID:20568222||PMID:19506554|PMID:19506554|PMID:19506554 Skin +UBERON:0000428 prostate epithelium prostate epithelium CL:0002340 luminal cell of prostate epithelium luminal epithelia HGNC:125, HGNC:6364, HGNC:7372 doi:10.1002/path.5751 Prostate +UBERON:0000428 prostate epithelium prostate epithelium CL:0002341 basal cell of prostate epithelium basal epithelia HGNC:10492, HGNC:6416, HGNC:6442 doi:10.1002/path.5751 Prostate +UBERON:0002135 Mitral valve Mitral valve CL:0002350 endocardial cell endocardial HGNC:12726, HGNC:1764, HGNC:8823 Heart +UBERON:0002134 Tricuspid valve Tricuspid valve CL:0002350 endocardial cell endocardial HGNC:12726, HGNC:1764, HGNC:8823 Heart +UBERON:0002146 Pulmonary Valve Pulmonary Valve CL:0002350 endocardial cell endocardial HGNC:12726, HGNC:1764, HGNC:8823 Heart +UBERON:0003952 anterior stroma of cornea anterior stroma of cornea CL:0002363 keratocyte keratocyte HGNC:8803 DOI:10.1111/jcmm.13270 Eye +UBERON:0003846 thymus epithelium thymus epithelium CL:0002364 cortical thymic epithelial cell cortical thymic epithelial cell HGNC:10624, HGNC:11529, HGNC:1799, HGNC:18901, HGNC:2067, HGNC:2287, HGNC:2538, HGNC:31963, HGNC:31963, HGNC:32322, HGNC:4403, HGNC:9093, HGNC:9480, HGNC:9538, HGNC:9546, HGNC:9666 DOI:10.1126/science.aay3224|DOI:10.1182/blood-2008-11-187633.|DOI:10.3791/50951 Thymus +UBERON:8410075 lymph node paracortical cord Paracortical Cord CL:0002394 CD141-positive myeloid dendritic cell Conventional Dendritic Cell cDC1 HGNC:11784, HGNC:1625, HGNC:1697, HGNC:26705, HGNC:28915, HGNC:500, HGNC:5951, HGNC:6059, HGNC:6152 DOI:10.1016/S0002-94401061694-X|DOI:10.1016/j.immuni.2017.02.019|SummersKL,HockBD,McKenzieJL,HartDN|Phenotypiccharacterizationoffivedendriticcellsubsetsinhumantonsils|AmJPathol|2001Jul;1591:285-95|doi:10|1016/S0002-94401061694-X|PMID:11438475;PMCID:PMC1850402||GranotT,SendaT,CarpenterDJ,MatsuokaN,WeinerJ,GordonCL,MironM,KumarBV,GriesemerA,HoSH,LernerH,ThomeJJC,ConnorsT,ReizisB,FarberDL|DendriticCellsDisplaySubsetandTissue-SpecificMaturationDynamicsoverHumanLife|Immunity|2017Mar21;463:504-515|doi:10|1016/j|immuni|2017|02|019|PMID:28329707;PMCID:PMC5415308| Lymph_node +UBERON:0005353 spleen perifollicular zone Perifollicular Zone CL:0002394 myeloid dendritic cell cDC1 cDC1 myeloid dendritic cell HGNC:11784, HGNC:1625, HGNC:26705, HGNC:6152 DOI:10.4049/jimmunol.1002632|DOI:10.1046/j.1365-2567.1997.00328.x|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0002394 myeloid dendritic cell cDC1 cDC1 myeloid dendritic cell HGNC:11784, HGNC:1625, HGNC:26705, HGNC:6152 DOI:10.4049/jimmunol.1002632|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0000178 Blood Blood CL:0002394 CD141-positive myeloid dendritic cell dendritic cell type 1 (DC1) HGNC:11784, HGNC:1625, HGNC:1628, HGNC:1633, HGNC:1636, HGNC:1674, HGNC:26705, HGNC:26705, HGNC:3619, HGNC:4947, HGNC:5951, HGNC:6012, HGNC:6152, HGNC:7656 DOI:10.3109/10428194.2013.781167 Blood +UBERON:0002405 immune system immune system of respiratory tract CL:0002394 CD141-positive myeloid dendritic cell cDC1 CD141-positive myeloid dendritic cell HGNC:11784, HGNC:11784, HGNC:14558, HGNC:1625, HGNC:1686, HGNC:2252, HGNC:26705, HGNC:26705, HGNC:28344, HGNC:3611, HGNC:3765, HGNC:4948, HGNC:5951, HGNC:9666, HGNC:9666 Lung +UBERON:0000178 Blood Blood CL:0002396 CD14-low, CD16-positive monocyte CD16 monocyte HGNC:13378, HGNC:14189, HGNC:1628, HGNC:1633, HGNC:16642, HGNC:1674, HGNC:24149, HGNC:2558, HGNC:2561, HGNC:3619, HGNC:3619, HGNC:5414, HGNC:7656 Blood +UBERON:0002371 Bone marrow Bone marrow CL:0002396 CD14-low, CD16-positive monocyte CD16 monocyte HGNC:13378, HGNC:14189, HGNC:1628, HGNC:1662, HGNC:16642, HGNC:1667, HGNC:24149, HGNC:28874, HGNC:31713, HGNC:3613, HGNC:3619, HGNC:5414, HGNC:6012, HGNC:6342, HGNC:7154 Bone-Marrow +UBERON:0000178 Blood Blood CL:0002399 CD1c-positive myeloid dendritic cell dendritic cell type 3 (DC3) HGNC:10498, HGNC:10499, HGNC:11784, HGNC:1628, HGNC:1631, HGNC:1633, HGNC:1636, HGNC:1636, HGNC:1663, HGNC:1674, HGNC:16916, HGNC:3609, HGNC:3619, HGNC:4947, HGNC:6012, HGNC:6152, HGNC:7656 DOI:10.1002/cyto.a.23724 multi_loc +UBERON:0005353 spleen perifollicular zone Perifollicular Zone CL:0002399 myeloid dendritic cell cDC2 cDC2 myeloid dendritic cell HGNC:1636, HGNC:1636, HGNC:16916, HGNC:6152, HGNC:9662 DOI:10.4049/jimmunol.1002632|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0002399 myeloid dendritic cell cDC2 cDC2 myeloid dendritic cell HGNC:1636, HGNC:1636, HGNC:16916, HGNC:6152, HGNC:9662 DOI:10.4049/jimmunol.1002632|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0000178 Blood Blood CL:0002399 CD1c-positive myeloid dendritic cell dendritic cell type 2 (DC2) HGNC:11784, HGNC:1628, HGNC:1633, HGNC:1636, HGNC:1636, HGNC:1674, HGNC:16916, HGNC:3609, HGNC:3618, HGNC:3619, HGNC:4940, HGNC:4943, HGNC:4947, HGNC:6012, HGNC:6152, HGNC:7656 DOI:10.1016/j.immuni.2017.04.019 multi_loc +UBERON:0004647 liver lobule hepatic Lobule CL:0002399 CD1c+ myeloid dendritic cell Conventional DC 2 HGNC:1636 DOI:10.1111/imm.12888|PMID:29313948 Liver +UBERON:0002405 immune system immune system of respiratory tract CL:0002399 CD1c-positive myeloid dendritic cell cDC2 CD1c-positive myeloid dendritic cell HGNC:14558, HGNC:1636, HGNC:1636, HGNC:1686, HGNC:16916, HGNC:2252, HGNC:28344, HGNC:3611, HGNC:3618, HGNC:4948, HGNC:9662, HGNC:9662, HGNC:9666, HGNC:9666 Lung +UBERON:0000178 Blood Blood CL:0002399 CD1c-positive myeloid dendritic cell dendritic cell type 3 (DC3) HGNC:10498, HGNC:10499, HGNC:11784, HGNC:1628, HGNC:1631, HGNC:1633, HGNC:1636, HGNC:1636, HGNC:1663, HGNC:1674, HGNC:16916, HGNC:3609, HGNC:3619, HGNC:4947, HGNC:6012, HGNC:6152, HGNC:7656 DOI:10.1002/cyto.a.23724 Blood +UBERON:0000178 Blood Blood CL:0002399 CD1c-positive myeloid dendritic cell dendritic cell type 2 (DC2) HGNC:11784, HGNC:1628, HGNC:1633, HGNC:1636, HGNC:1636, HGNC:1674, HGNC:16916, HGNC:3609, HGNC:3618, HGNC:3619, HGNC:4940, HGNC:4943, HGNC:4947, HGNC:6012, HGNC:6152, HGNC:7656 DOI:10.1016/j.immuni.2017.04.019 Blood +UBERON:8410067 lymph node interfollicular cortex Interfollicular Cortex CL:0002399 CD1c-positive myeloid dendritic cell Conventional Dendritic Cell cDC2 HGNC:1636, HGNC:1636, HGNC:16916, HGNC:1697, HGNC:1705, HGNC:6152, HGNC:9662 DOI:10.1038/s41423-020-0511-y|DOI:10.1016/S0002-94401061694-X|DOI:10.1016/j.immuni.2017.02.019|ShinJY,WangCY,LinCC,ChuCL|Arecentlydescribedtype2conventionaldendriticcellcDC2subsetmediatesinflammation|CellMolImmunol|2020Dec;1712:1215-1217|doi:10|1038/s41423-020-0511-y|Epub2020Jul30|PMID:32732988;PMCID:PMC7785008||SummersKL,HockBD,McKenzieJL,HartDN|Phenotypiccharacterizationoffivedendriticcellsubsetsinhumantonsils|AmJPathol|2001Jul;1591:285-95|doi:10|1016/S0002-94401061694-X|PMID:11438475;PMCID:PMC1850402||GranotT,SendaT,CarpenterDJ,MatsuokaN,WeinerJ,GordonCL,MironM,KumarBV,GriesemerA,HoSH,LernerH,ThomeJJC,ConnorsT,ReizisB,FarberDL|DendriticCellsDisplaySubsetandTissue-SpecificMaturationDynamicsoverHumanLife|Immunity|2017Mar21;463:504-515|doi:10|1016/j|immuni|2017|02|019|PMID:28329707;PMCID:PMC5415308 Lymph_node +UBERON:0018234 stroma of pancreas Stroma of pancreas CL:0002410 pancreatic stellate cell Pancreatic stellate cell HGNC:130, HGNC:5129, HGNC:5130, HGNC:6482 multi_loc +UBERON:0018234 stroma of pancreas Stroma of pancreas CL:0002410 pancreatic stellate cell Pancreatic stellate cell HGNC:8804 multi_loc +UBERON:0018234 stroma of pancreas Stroma of pancreas CL:0002410 pancreatic stellate cell Pancreatic stellate cell HGNC:130, HGNC:5129, HGNC:5130, HGNC:6482 Pancreas +UBERON:0018234 stroma of pancreas Stroma of pancreas CL:0002410 pancreatic stellate cell Pancreatic stellate cell HGNC:8804 Pancreas +UBERON:0006936 thymus subcapsular epithelium thymus subcapsular epithelium CL:0002425 early T lineage precursor early thymic progenitor HGNC:11241, HGNC:13222, HGNC:1633, HGNC:1662, HGNC:1662, HGNC:1681, HGNC:1695, HGNC:1695, HGNC:1699, HGNC:1699, HGNC:5358, HGNC:7218 DOI:10.1016/j.immuni.2020.03.019|DOI:10.3389/fimmu.2019.00447.|LavaertM,LiangKL,VandammeN,ParkJE,RoelsJ,KowalczykMS,LiB,AshenbergO,TabakaM,DionneD,TickleTL,SlyperM,Rozenblatt-RosenO,VandekerckhoveB,LeclercqG,RegevA,VanVlierbergheP,GuilliamsM,TeichmannSA,SaeysY,TaghonT|IntegratedscRNA-SeqIdentifiesHumanPostnatalThymusSeedingProgenitorsandRegulatoryDynamicsofDifferentiatingImmatureThymocytes|Immunity|2020Jun16;52(6):1088-1104|e6|doi:10|1016/j|immuni|2020|03|019|Epub2020Apr17|PMID:32304633| Thymus +UBERON:0003988 thymus corticomedullary boundary corticomedullary boundary of thymus CL:0002436 mature CD4 single-positive thymocyte CD4+ T single positive thymocyte HGNC:10307, HGNC:10720, HGNC:1464, HGNC:1634, HGNC:1667, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:22404, HGNC:245, HGNC:26192, HGNC:34345, HGNC:5361, HGNC:78, HGNC:9666 DOI:10.1172/JCI7558. Thymus +UBERON:0002124 medulla of thymus medulla of thymus CL:0002436 mature CD4 single-positive thymocyte CD4+ T single positive thymocyte HGNC:10307, HGNC:10720, HGNC:11922, HGNC:1464, HGNC:1634, HGNC:1678, HGNC:1694, HGNC:22404, HGNC:245, HGNC:26192, HGNC:5361, HGNC:78, HGNC:9666 DOI:10.1126/science.aay3224|DOI:10.3389/fimmu.2019.00447|DOI:10.1038/s41467-021-21346-6 Thymus +UBERON:0000178 Blood Blood CL:0002437 mature CD8 single-positive thymocyte mature CD8 T cell HGNC:10632, HGNC:10720, HGNC:11922, HGNC:12276, HGNC:1608, HGNC:1667, HGNC:1674, HGNC:1678, HGNC:16830, HGNC:1706, HGNC:1706, HGNC:3068, HGNC:4710, HGNC:4711, HGNC:6380, HGNC:9666 Blood +UBERON:0002124 medulla of thymus medulla of thymus CL:0002437 mature CD8 single-positive thymocyte CD8+ T single positive thymocyte HGNC:11395, HGNC:11922, HGNC:163, HGNC:1634, HGNC:1694, HGNC:1695, HGNC:1706, HGNC:1706, HGNC:1707, HGNC:17200, HGNC:1933, HGNC:4712, HGNC:6024, HGNC:9666 DOI:10.1126/science.aay3224|DOI:10.3389/fimmu.2019.00447|DOI:10.1038/s41467-021-21346-6 Thymus +UBERON:0003988 thymus corticomedullary boundary corticomedullary boundary of thymus CL:0002437 mature CD8 single-positive thymocyte CD8+ T single positive thymocyte HGNC:11395, HGNC:163, HGNC:1634, HGNC:1667, HGNC:1674, HGNC:1678, HGNC:1695, HGNC:1706, HGNC:1706, HGNC:1707, HGNC:17200, HGNC:1933, HGNC:4712, HGNC:6024, HGNC:9666 DOI:10.1172/JCI7558. Thymus +UBERON:0000955 brain brain CL:0002453 oligodendrocyte precursor cell oligodendrocyte precursor cell HGNC:51662 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0002453 oligodendrocyte precursor cell oligodendrocyte precursor cell HGNC:26287 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0002453 oligodendrocyte precursor cell oligodendrocyte precursor cell HGNC:16983, HGNC:612 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0002453 oligodendrocyte precursor cell oligodendrocyte precursor cell HGNC:26287 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0002453 oligodendrocyte precursor cell oligodendrocyte precursor cell HGNC:16983 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0002453 oligodendrocyte precursor cell oligodendrocyte precursor cell HGNC:16983, HGNC:612 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0002453 oligodendrocyte precursor cell oligodendrocyte precursor cell HGNC:16983 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0002453 oligodendrocyte precursor cell oligodendrocyte precursor cell HGNC:51662 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0002453 oligodendrocyte precursor cell oligodendrocyte precursor cell HGNC:16983, HGNC:52001 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002069 stratum granulosum of epidermis Stratum granulosum (SG) CL:0002457 epidermal Langerhans cell Langerhans cell HGNC:1634, HGNC:17935, HGNC:7067 DOI:10.1016/S0171-2985(84)80117-5|DOI:10.1111/1523-1747.ep12712175|DOI:10.1016/s1074-7613(00)80160-0|PMID:6397423||PMID:2784820|PMID:10661407 Skin +UBERON:0002026 stratum spinosum of epidermis Stratum spinosum (SS) CL:0002457 epidermal Langerhans cell Langerhans cell HGNC:1634, HGNC:17935 DOI:10.1016/S0171-2985(84)80117-5|DOI:10.1111/1523-1747.ep12712175|DOI:10.1016/s1074-7613(00)80160-0|PMID:6397423||PMID:2784820|PMID:10661407 Skin +UBERON:0002025 stratum basale of epidermis Stratum basale (SB) CL:0002457 epidermal Langerhans cell Langerhans cell HGNC:1634, HGNC:17935 DOI:10.1016/S0171-2985(84)80117-5|DOI:10.1111/1523-1747.ep12712175|DOI:10.1016/s1074-7613(00)80160-0|PMID:6397423||PMID:2784820|PMID:10661407 Skin +UBERON:0002124 medulla of thymus medulla of thymus CL:0002460 CD8alpha-negative thymic conventional dendritic cell conventional dendritic cell 2 HGNC:11784, HGNC:1625, HGNC:1636, HGNC:1659, HGNC:1678, HGNC:16916, HGNC:1703, HGNC:19084, HGNC:2535, HGNC:404, HGNC:4620, HGNC:4942, HGNC:4944, HGNC:6149, HGNC:6152, HGNC:6562, HGNC:7183, HGNC:9662, HGNC:9666 DOI:10.1126/science.aay3224|DOI:10.1172/JCI11734|DOI:10.1038/cti.2015.21 Thymus +UBERON:0003988 thymus corticomedullary boundary corticomedullary boundary of thymus CL:0002460 CD8alpha-negative thymic conventional dendritic cell conventional dendritic cell 2 HGNC:11784, HGNC:1625, HGNC:1636, HGNC:1659, HGNC:1678, HGNC:16916, HGNC:1703, HGNC:19084, HGNC:2535, HGNC:404, HGNC:4620, HGNC:4942, HGNC:4944, HGNC:6149, HGNC:6152, HGNC:6562, HGNC:7183, HGNC:9662, HGNC:9666 DOI:10.1126/science.aay3224|DOI:10.1172/JCI11734|DOI:10.1038/cti.2015.21 Thymus +UBERON:0002072 hypodermis Subcutaneous CL:0002521 subcutaneous fat cell Adipocyte HGNC:10500, HGNC:1435 DOI:10.1101/cshperspect.a015271|DOI:10.1155/2010/790431|DOI:10.1016/j.humpath.2005.11.006|PMID:24591537|PMID:20672003|PMID:16613326 Skin +UBERON:0003254 amniotic ectoderm amniotic ectoderm CL:0002536 epithelial cell of amnion amnion epithelial cell (AEC) HGNC:11195, HGNC:6445, HGNC:9221 DOI:10.1016/j.jim.2003.03.001|DOI:10.1053/plac.2000.0559|doi.org/10.1095/biolreprod.106.055244|doi:10.1016/j.jri.2009.02.007|doi:10.1371/journal.pone.0146082|doi:10.1016/j.jri.2009.02.007|doi:10.1371/journal.pone.0146082|doi:10.1016/j.jri.2009.02.007|doi:10.17772/gp/1673|doi:10.1371/journal.pone.0146082 Placenta +UBERON:0003265 chorionic mesenchyme chorionic mesoderm CL:0002541 chorionic membrane mesenchymal stem cell chorionic mesenchymal stromal cell (CMSC) HGNC:11801, HGNC:1681, HGNC:3349, HGNC:7656, HGNC:8021 doi:10.3390/cells1041061|doi:10.1016/j.jcyt.2017.03.001|doi:10.1186/s13287-017-0757-1|DOI:10.1095/biolreprod51.4.739|DOI:10.1095/biolreprod.108.075226|doi.org/10.1182/blood.V74.2.751.751|doi:10.3390/cells1041061|doi:10.5966/sctm.2015-0022|doi:10.3346/jkms.2012.27.8.857|doi:10.1016/j.jcyt.2017.03.001|doi:10.1186/s13287-017-0757-1|DOI:10.1093/humrep/den051|DOI:10.1095/biolreprod.108.075226|doi:10.3390/cells1041061|doi:10.5966/sctm.2015-0022|doi:10.3346/jkms.2012.27.8.857|doi:10.1016/j.jcyt.2017.03.001|doi:10.1186/s13287-017-0757-1|DOI:10.1095/biolreprod.108.075226|doi:10.3390/cells1041061|doi:10.5966/sctm.2015-0022|doi:10.3346/jkms.2012.27.8.857|doi:10.1016/j.jcyt.2017.03.001|doi:10.1186/s13287-017-0757-1|doi:10.5966/sctm.2015-0022|doi:10.1016/j.jcyt.2017.03.001|PMID:1697563|PMID:1697563 Placenta +UBERON:0002017 portal vein portal vein CL:0002543 vein endothelial cell endothelial cell HGNC:10718, HGNC:12726, HGNC:13635, HGNC:1662 DOI:10.1038/srep44356 Liver +UBERON:0006841 central vein of liver central vein CL:0002543 vein endothelial cell endothelial cell HGNC:1662, HGNC:1662, HGNC:8823, HGNC:8823 DOI:10.1038/srep44356 Liver +UBERON:0000055 vessel vessel CL:0002543 vein endothelial cell venous endothelium HGNC:1662, HGNC:1662, HGNC:1663, HGNC:1663, HGNC:8823, HGNC:8823 NoDOI Large_intestine +UBERON:0003713 splenic vein Splenic Vein CL:0002543 vein endothelial cell Blood Endothelial Cells HGNC:11784, HGNC:12726, HGNC:1662, HGNC:1662, HGNC:8823, HGNC:8823 DOI:10.1007/s00418-007-0320-8|DOI:10.1016/j.aanat.2019.05.004|DOI10.1182/bloodadvances.2017015073 Spleen +UBERON:0002012 pulmonary artery pulmonary artery CL:0002557 fibroblast of pulmonary artery fibroblast of pulmonary artery HGNC:2198, HGNC:7166 Lung +UBERON:0002506 iris epithelium iris epithelium CL:0002565 iris pigment epithelial cell iris pigment epithelial cell HGNC:799 DOI:10.3390/cell7110210 Eye +UBERON:0003422 mesenchyme of umbilical cord mesenchyme of umbilical cord (Wharton's jelly) CL:0002568 mesenchymal stem cell of Wharton's jelly mesenchymal stromal cell of Wharton's jelly HGNC:11801, HGNC:1681, HGNC:3349, HGNC:8021 doi:10.3390/cells1041061|doi:10.1016/j.jcyt.2017.03.001|doi:10.1186/s13287-017-0757-1|DOI:10.1095/biolreprod51.4.739|DOI:10.1095/biolreprod.108.075226|doi.org/10.1182/blood.V74.2.751.751|doi:10.3390/cells1041061|doi:10.5966/sctm.2015-0022|doi:10.3346/jkms.2012.27.8.857|doi:10.1016/j.jcyt.2017.03.001|doi:10.1186/s13287-017-0757-1|DOI:10.1093/humrep/den051|DOI:10.1095/biolreprod.108.075226|doi:10.3390/cells1041061|doi:10.5966/sctm.2015-0022|doi:10.3346/jkms.2012.27.8.857|doi:10.1016/j.jcyt.2017.03.001|doi:10.1186/s13287-017-0757-1|DOI:10.1095/biolreprod.108.075226|doi:10.3390/cells1041061|doi:10.5966/sctm.2015-0022|doi:10.3346/jkms.2012.27.8.857|doi:10.1016/j.jcyt.2017.03.001|doi:10.1186/s13287-017-0757-1 Placenta +UBERON:0002072 hypodermis Subcutaneous CL:0002573 Schwann cell Schwann cell HGNC:10492, HGNC:7809 DOI:10.1111/wrr.12647|DOI:10.1111/j.1365-4362.1984.tb05661.x|DOI:10.1093/brain/awm199|PMID:30098299|PMID:6373634||PMID:17898011| Skin +UBERON:0002067 dermis Dermis CL:0002573 Schwann cell Schwann cell HGNC:10492, HGNC:7809 DOI:10.1111/wrr.12647|DOI:10.1111/j.1365-4362.1984.tb05661.x|DOI:10.1093/brain/awm199|DOI:10.1016/S0065-1281(97)80024-4|PMID:30098299|PMID:6373634||PMID:17898011||PMID:9381913| Skin +UBERON:0007177 lamina propria of mucosa of colon lamina propria CL:0002573 Schwann cell nerve/schwann cell HGNC:1050, HGNC:1050, HGNC:12513, HGNC:12513, HGNC:7656, HGNC:7656 DOI:10.1111/j.1440-1827.1989.tb02421.x|DOI:10.1034/j.1600-065x.2003.00072.x|PMID:2618659|PMID:12969318 Large_intestine +UBERON:0012399 large intestine smooth muscle longitudinal layer longitudinal muscle layer CL:0002573 Schwann cell nerve HGNC:1050, HGNC:1050, HGNC:1119, HGNC:1119, HGNC:12513, HGNC:12513 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 Large_intestine +UBERON:0005742 adventitia adventitia CL:0002573 Schwann cell nerve HGNC:1050, HGNC:1050, HGNC:1119, HGNC:1119, HGNC:12513, HGNC:12513 NoDOI Large_intestine +UBERON:0007178 muscularis mucosae of colon muscularis mucosa CL:0002573 Schwann cell nerve HGNC:12513, HGNC:12513, HGNC:17635, HGNC:17635, HGNC:7656, HGNC:7656 NoDOI Large_intestine +UBERON:0005304 submucous nerve plexus submucosal plexus of Meissner CL:0002573 Schwann cell nerve HGNC:1050, HGNC:1050, HGNC:1119, HGNC:1119, HGNC:12513, HGNC:12513 NoDOI|PMID:2621148PMCID:PMC1256735 Large_intestine +UBERON:0012398 large intestine smooth muscle circular layer circular muscle layer CL:0002573 Schwann cell nerve HGNC:1050, HGNC:1050, HGNC:1119, HGNC:1119, HGNC:12513, HGNC:12513 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 Large_intestine +UBERON:0006134 nerve fiber nerve CL:0002573 Schwann cell schwann cell HGNC:10492, HGNC:10492 NoDOI Large_intestine +UBERON:0003329 submucosa of anal canal submucosa CL:0002573 Schwann cell nerve HGNC:1050, HGNC:1050, HGNC:1119, HGNC:1119, HGNC:12513, HGNC:12513 NoDOI Large_intestine +UBERON:0003331 submucosa of colon submucosa CL:0002573 Schwann cell nerve HGNC:1050, HGNC:1050, HGNC:1119, HGNC:1119, HGNC:12513, HGNC:12513 NoDOI Large_intestine +UBERON:0002439 myenteric nerve plexus myenteric plexus of Auerbach CL:0002573 Schwann cell nerve HGNC:1050, HGNC:1050, HGNC:1119, HGNC:1119, HGNC:12513, HGNC:12513 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 Large_intestine +UBERON:0012375 subserosa subserosa CL:0002573 Schwann cell nerve HGNC:1050, HGNC:1050, HGNC:1119, HGNC:1119, HGNC:12513, HGNC:12513 NoDOI Large_intestine +UBERON:0004927 submucosa of cecum submucosa CL:0002573 Schwann cell nerve HGNC:1050, HGNC:1050, HGNC:1119, HGNC:1119, HGNC:12513, HGNC:12513 NoDOI Large_intestine +UBERON:0002348 epicardium Epicardium CL:0002573 Schwann cell Schwann Cell HGNC:11190 Heart +UBERON:0003379 cardiac muscle of right atrium myocardium CL:0002573 Schwann cell Schwann Cell HGNC:8008, HGNC:8010, HGNC:9086 Heart +UBERON:0011189 lamina propria of large intestine lamina propria CL:0002573 Schwann cell nerve/schwann cell HGNC:1050, HGNC:1050, HGNC:12513, HGNC:12513, HGNC:7656, HGNC:7656 DOI:10.1111/j.1440-1827.1989.tb02421.x|DOI:10.1034/j.1600-065x.2003.00072.x|PMID:2618659|PMID:12969318 Large_intestine +UBERON:0006134 nerve fiber nerve CL:0002576 perineurial cell perineurial cell HGNC:1662, HGNC:1662 NoDOI Large_intestine +UBERON:0004864 vasculature of retina vasculature CL:0002585 retinal blood vessel endothelial cell Endothelial Cell HGNC:2047, HGNC:2202, HGNC:5476 Eye +UBERON:0001782 pigmented layer of retina retinal pigmented epithelium CL:0002586 retinal pigment epithelial cell retinal pigmented epithelial cell HGNC:10024, HGNC:10294, HGNC:12691 DOI:10.1016/j.ophtha.2017.09.016|DOI:10.1083/jcb.147.7.1533 Eye +UBERON:0012416 respiratory system arterial smooth muscle arterial system smooth muscle CL:0002591 smooth muscle cell of the pulmonary artery smooth muscle cell of the pulmonary artery HGNC:2198, HGNC:2705, HGNC:4881, HGNC:7035, HGNC:7883, HGNC:8033, HGNC:9080 Lung +UBERON:0035374 small cardiac vein small cardiac vein CL:0002592 smooth muscle cell of the coronary artery smooth muscle cell HGNC:11553, HGNC:130, HGNC:7569 Heart +UBERON:0001625 right coronary artery right coronary artery CL:0002592 smooth muscle cell of the coronary artery smooth muscle cell HGNC:11553, HGNC:130, HGNC:7569 Heart +UBERON:0035422 circumflex branch of left coronary artery left circumflex artery CL:0002592 smooth muscle cell of the coronary artery smooth muscle cell HGNC:11553, HGNC:130, HGNC:7569 Heart +UBERON:0012239 urinary bladder vasculature urinary bladder vasculature CL:0002597 smooth muscle cell of bladder smooth muscle HGNC:281, HGNC:45169, HGNC:6934 multi_loc +UBERON:0012239 urinary bladder vasculature urinary bladder vasculature CL:0002597 smooth muscle cell of bladder smooth muscle HGNC:1663, HGNC:45169, HGNC:895 multi_loc +UBERON:0000381 urinary bladder detrusor smooth muscle urinary bladder detrusor smooth muscle CL:0002597 smooth muscle cell of bladder smooth muscle HGNC:145, HGNC:2770, HGNC:45169 Urinary_bladder +UBERON:0012239 urinary bladder vasculature urinary bladder vasculature CL:0002597 smooth muscle cell of bladder smooth muscle HGNC:281, HGNC:45169, HGNC:6934 Urinary_bladder +UBERON:0012239 urinary bladder vasculature urinary bladder vasculature CL:0002597 smooth muscle cell of bladder smooth muscle HGNC:1663, HGNC:45169, HGNC:895 Urinary_bladder +UBERON:0004242 bronchus smooth muscle bronchial smooth muscle CL:0002598 bronchial smooth muscle cell bronchial smooth muscle cell HGNC:11553, HGNC:130, HGNC:130, HGNC:16122, HGNC:19719, HGNC:19719, HGNC:2155, HGNC:2155, HGNC:2198, HGNC:2705, HGNC:2770, HGNC:7035, HGNC:7569, HGNC:9080 Lung +UBERON:0002600 limbic lobe limbic lobe CL:0002604 hippocampal astrocyte hippocampal astrocyte HGNC:14864, HGNC:4319 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:0002605 astrocyte of the cerebral cortex astrocyte of the cerebral cortex HGNC:3690, HGNC:43436, HGNC:5362 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:0002605 astrocyte of the cerebral cortex astrocyte of the cerebral cortex HGNC:14864, HGNC:52515 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:0002605 astrocyte of the cerebral cortex astrocyte of the cerebral cortex HGNC:14864, HGNC:52515 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:0002605 astrocyte of the cerebral cortex astrocyte of the cerebral cortex HGNC:3690, HGNC:43436, HGNC:5362 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0004849 respiratory system venous endothelium respiratory system venous endothelium CL:0002619 adult endothelial progenitor cell adult endothelial progenitor cell HGNC:339, HGNC:339, HGNC:6342, HGNC:6342 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 Lung +UBERON:0002072 hypodermis Subcutaneous CL:0002620 skin fibroblast Fibroblast HGNC:12692, HGNC:1662, HGNC:3541 DOI:10.1016/j.tcb.2014.10.001|DOI:10.1111/j.1365-2133.1989.tb15509.x|DOI:10.1074/jbc.M701586200|DOI:10.1097/00000372-199606000-00008|PMID:25455110||PMID:2576222|PMID:17567584|PMID:8806963 Skin +UBERON:0002067 dermis Dermis CL:0002620 skin fibroblast Fibroblast HGNC:12692, HGNC:1662, HGNC:3541 DOI:10.1016/j.tcb.2014.10.001|DOI:10.1111/j.1365-2133.1989.tb15509.x|DOI:10.1074/jbc.M701586200|DOI:10.1097/00000372-199606000-00008|PMID:25455110||PMID:2576222|PMID:17567584|PMID:8806963 Skin +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/Isolated lymphoid follicles (ILF) CL:0002652 endothelial cell of high endothelial venule ILV high endothelial venule endothelium HGNC:6765, HGNC:6765 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 Large_intestine +UBERON:0002124 medulla of thymus medulla of thymus CL:0002677 naive regulatory T cell regulatory T cells HGNC:10494, HGNC:13177, HGNC:1678, HGNC:16830, HGNC:2505, HGNC:26838, HGNC:33701, HGNC:4183, HGNC:6106, HGNC:6106, HGNC:8987, HGNC:9108, HGNC:958 DOI:10.1126/science.aay3224|DOI:10.3389/fimmu.2019.00447|DOI:10.1038/nature03886 Thymus +UBERON:0001791 inner nuclear layer of retina inner nuclear layer CL:0004219 A2 amacrine cell A2 cell HGNC:1435 DOI:10.1016/j.preteyeres.2020.100844 Eye +UBERON:0001791 inner nuclear layer of retina inner nuclear layer CL:0004232 starburst amacrine cell starburst amacrine cell HGNC:1912 DOI:10.1016/j.preteyeres.2020.100844 Eye +UBERON:0001791 inner nuclear layer of retina inner nuclear layer CL:0004253 wide field retinal amacrine cell wide field cell HGNC:10575, HGNC:12693, HGNC:787, HGNC:9723 DOI:10.1016/j.preteyeres.2020.100844 Eye +UBERON:0000006 islet of Langerhans Islet of Langerhans CL:0005019 pancreatic epsilon cell Epsilon cell HGNC:11506, HGNC:11506, HGNC:12513, HGNC:18129, HGNC:1929, HGNC:1929 Pancreas +UBERON:0000088 trophoblast chorionic ectoderm (from chorion membrane) CL:0008036 extravillous trophoblast extravillous trophoblast (EVT) HGNC:19254, HGNC:4964, HGNC:6445, HGNC:6934 doi.org/10.1016/0198-8859(93)90138-Q|DOI:10.1016/j.jim.2003.03.001|DOI:10.1053/plac.2000.0559|doi.org/10.1095/biolreprod.106.055244|PMID:8804361|doi:10.1155/2021/6662201|doi:10.1093/humrep/dem265|DOI:10.1242/dev.148932|PMID:8804361 Placenta +UBERON:0015172 endometrial blood vessel decidual blood vessel CL:0008036 extravillous trophoblast extravillous trophoblast (endovascular) HGNC:1764, HGNC:4964, HGNC:6445, HGNC:6934 doi.org/10.1016/0198-8859(93)90138-Q|DOI:10.1016/j.jim.2003.03.001|DOI:10.1053/plac.2000.0559|doi.org/10.1095/biolreprod.106.055244|PMID:8804361|doi:10.1155/2021/6662201|doi:10.1093/humrep/dem265|doi:10.1172/JCI119387|PMID:8804361 Placenta +UBERON:0022281 epithelium of crypt of Lieberkuhn of large intestine epithelium CL:0009009 paneth cell of colon Paneth HGNC:2764, HGNC:2764 DOI:10.1016/j.humpath.2008.12.003|PMID:19269007 Large_intestine +UBERON:0011184 epithelium of crypt of Lieberkuhn epithelium CL:0009009 paneth cell of epithelium of large intestine Paneth HGNC:2764, HGNC:2764 DOI:10.1016/j.humpath.2008.12.003|PMID:19269007 Large_intestine +UBERON:0022281 epithelium of crypt of Lieberkuhn of large intestine epithelium CL:0009011 transit amplifying cell of colon transient amplifying cell HGNC:20412, HGNC:20412 DOI:10.1038/s42003-020-01181-z|PMID:32814826PMCID:PMC7438495 Large_intestine +UBERON:0011184 epithelium of crypt of Lieberkuhn epithelium CL:0009011 transit amplifying cell of colon transient amplifying cell HGNC:20412, HGNC:20412 DOI:10.1038/s42003-020-01181-z|PMID:32814826PMCID:PMC7438495 Large_intestine +UBERON:0022281 epithelium of crypt of Lieberkuhn of large intestine epithelium CL:0009016 intestinal crypt stem cell of large intestine epithelial stem cell HGNC:11204, HGNC:11204, HGNC:1681, HGNC:1681, HGNC:17360, HGNC:17360, HGNC:20323, HGNC:20323, HGNC:26896, HGNC:26896, HGNC:4504, HGNC:4504 DOI:10.1038/nature06196|PMID:17934449 Large_intestine +UBERON:0011184 epithelium of crypt of Lieberkuhn epithelium CL:0009016 intestinal crypt stem cell of large intestine epithelial stem cell HGNC:11204, HGNC:11204, HGNC:1681, HGNC:1681, HGNC:17360, HGNC:17360, HGNC:20323, HGNC:20323, HGNC:26896, HGNC:26896, HGNC:4504, HGNC:4504 DOI:10.1038/nature06196|PMID:17934449 Large_intestine +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/Isolated lymphoid follicles (ILF) CL:0009018 macrophage CD8+ T cell HGNC:1639, HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695, HGNC:1706, HGNC:1706 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 Large_intestine +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/Isolated lymphoid follicles (ILF) CL:0009018 macrophage CD8+ T cell HGNC:1639, HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695, HGNC:1706, HGNC:1706 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 multi_loc +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/Isolated lymphoid follicles (ILF) CL:0009018 lymphocyte of large intestine lamina propria NK cell HGNC:1695, HGNC:18788, HGNC:18788, HGNC:6152, HGNC:6152, HGNC:7656, HGNC:7656, HGNC:921 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 multi_loc +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/Isolated lymphoid follicles (ILF) CL:0009018 lymphocyte of large intestine lamina propria regulatory CD4+ T cell HGNC:1678, HGNC:1678, HGNC:6008, HGNC:6008, HGNC:6106, HGNC:6106 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 multi_loc +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/Isolated lymphoid follicles (ILF) CL:0009018 lymphocyte of large intestine lamina propria B cell HGNC:1633, HGNC:1633, HGNC:1698, HGNC:1698, HGNC:2336, HGNC:2336, HGNC:7315, HGNC:7315 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 Large_intestine +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/Isolated lymphoid follicles (ILF) CL:0009018 lymphocyte of large intestine lamina propria B cell HGNC:1633, HGNC:1633, HGNC:1698, HGNC:1698, HGNC:2336, HGNC:2336, HGNC:7315, HGNC:7315 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 multi_loc +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/Isolated lymphoid follicles (ILF) CL:0009018 lymphocyte of large intestine lamina propria CD4+ T cell HGNC:1639, HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1678, HGNC:1678, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 multi_loc +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/lamina propria CL:0009018 lymphocyte of large intestine lamina propria innate lymphoid cell HGNC:6024, HGNC:6024, HGNC:6342, HGNC:6342, HGNC:6373, HGNC:6373 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 multi_loc +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/Isolated lymphoid follicles (ILF) CL:0009018 lymphocyte of large intestine lamina propria CD4+ T cell HGNC:1639, HGNC:1639, HGNC:1676, HGNC:1676, HGNC:1678, HGNC:1678, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 multi_loc +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/lamina propria CL:0009018 lymphocyte of large intestine lamina propria NK cell HGNC:18788, HGNC:18788, HGNC:6152, HGNC:6152, HGNC:7656, HGNC:7656, HGNC:921, HGNC:921 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 multi_loc +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/Isolated lymphoid follicles (ILF) CL:0009018 lymphocyte of large intestine lamina propria CD4+ T cell HGNC:1639, HGNC:1639, HGNC:1676, HGNC:1676, HGNC:1678, HGNC:1678, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 Large_intestine +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/lamina propria CL:0009018 lymphocyte of large intestine lamina propria NK cell HGNC:18788, HGNC:18788, HGNC:6152, HGNC:6152, HGNC:7656, HGNC:7656, HGNC:921, HGNC:921 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 Large_intestine +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/Isolated lymphoid follicles (ILF) CL:0009018 lymphocyte of large intestine lamina propria regulatory CD4+ T cell HGNC:1678, HGNC:1678, HGNC:6008, HGNC:6008, HGNC:6106, HGNC:6106 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 Large_intestine +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/Isolated lymphoid follicles (ILF) CL:0009018 lymphocyte of large intestine lamina propria NK cell HGNC:1695, HGNC:18788, HGNC:18788, HGNC:6152, HGNC:6152, HGNC:7656, HGNC:7656, HGNC:921 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 Large_intestine +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/lamina propria CL:0009018 lymphocyte of large intestine lamina propria innate lymphoid cell HGNC:6024, HGNC:6024, HGNC:6342, HGNC:6342, HGNC:6373, HGNC:6373 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 Large_intestine +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/Isolated lymphoid follicles (ILF) CL:0009018 lymphocyte of large intestine lamina propria CD4+ T cell HGNC:1639, HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1678, HGNC:1678, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 Large_intestine +UBERON:0002124 medulla of thymus medulla of thymus CL:0009068 CD8aa(I) thymocyte CD8aa(I) thymocyte HGNC:11922, HGNC:12029, HGNC:1639, HGNC:1653, HGNC:1706, HGNC:6529, HGNC:6551, HGNC:8044, HGNC:9403, HGNC:9659 DOI:10.1126/science.aay3224 Thymus +UBERON:0002124 medulla of thymus medulla of thymus CL:0009069 CD8aa(II) thymocyte CD8aa(II) thymocyte HGNC:12276, HGNC:13177, HGNC:14013, HGNC:163, HGNC:1695, HGNC:16977, HGNC:2546, HGNC:28495, HGNC:37244, HGNC:7154 DOI:10.1126/science.aay3224 Thymus +UBERON:0003988 thymus corticomedullary boundary corticomedullary boundary of thymus CL:0009070 corticomedullary thymic epithelial cell corticomedullary thymic epithelial cell HGNC:10618, HGNC:10624, HGNC:11701, HGNC:11761, HGNC:19317, HGNC:21198, HGNC:2538, HGNC:2654, HGNC:6442, HGNC:9093 DOI:10.1126/science.aay3224|DOI:10.1038/s41467-021-21346-6 Thymus +UBERON:0003846 thymus epithelium thymus epithelium CL:0009071 medullary thymic epithelial cell type 1 medullary thymic epithelial cell type 1 HGNC:10513, HGNC:10617, HGNC:11529, HGNC:1799, HGNC:1907, HGNC:2095, HGNC:3778, HGNC:6416, HGNC:6421, HGNC:6421, HGNC:6436, HGNC:6442, HGNC:738, HGNC:9592, HGNC:9666 DOI:10.1126/science.aay3224|DOI:10.1038/s41467-021-21346-6|DOI:10.3791/50951 Thymus +UBERON:0003846 thymus epithelium thymus epithelium CL:0009072 medullary thymic epithelial cell type 2 medullary thymic epithelial cell type 2 HGNC:10617, HGNC:11141, HGNC:11529, HGNC:12692, HGNC:1452, HGNC:1799, HGNC:24757, HGNC:2481, HGNC:360, HGNC:3673, HGNC:4942, HGNC:6427, HGNC:6442, HGNC:8028, HGNC:9666 DOI:10.1126/science.aay3224|DOI:10.1038/s41467-021-21346-6|DOI:10.1080/01926230600865549|DOI:10.3791/50951|PearseG|Normalstructure,functionandhistologyofthethymus|ToxicolPathol|2006;34(5):504-14|doi:10|1080/01926230600865549|PMID:17067941| Thymus +UBERON:0003846 thymus epithelium thymus epithelium CL:0009073 medullary thymic epithelial cell type 3 medullary thymic epithelial cell type 3 HGNC:10499, HGNC:10773, HGNC:11529, HGNC:1240, HGNC:13348, HGNC:15464, HGNC:17637, HGNC:1799, HGNC:18180, HGNC:2766, HGNC:6436, HGNC:6443, HGNC:9666 DOI:10.1126/science.aay3224|DOI:10.1080/01926230600865549|DOI:10.3791/50951|PearseG|Normalstructure,functionandhistologyofthethymus|ToxicolPathol|2006;34(5):504-14|doi:10|1080/01926230600865549|PMID:17067941| Thymus +UBERON:0003987 Hassall's corpuscle Hassall's corpuscle CL:0009073 medullary thymic epithelial cell type 3 medullary thymic epithelial cell type 3 HGNC:10499, HGNC:10773, HGNC:11195, HGNC:11529, HGNC:1240, HGNC:13348, HGNC:15464, HGNC:17637, HGNC:1799, HGNC:18180, HGNC:2766, HGNC:30743, HGNC:6187, HGNC:6413, HGNC:6436, HGNC:6443, HGNC:9666 DOI:10.1038/nature03886.|DOI:10.1038/s41467-021-21346-6|DOI:10.4049/jimmunol.1002151|DOI:10.3791/50951 Thymus +UBERON:0003846 thymus epithelium thymus epithelium CL:0009074 medullary thymic epithelial cell type 4 medullary thymic epithelial cell type 4 HGNC:1079, HGNC:11529, HGNC:11529, HGNC:11529, HGNC:1799, HGNC:20796, HGNC:2700, HGNC:27364, HGNC:3815, HGNC:533, HGNC:542, HGNC:6430, HGNC:6446, HGNC:6690, HGNC:9666 DOI:10.1126/science.aay3224|DOI:10.1038/s41586-018-0345-2|DOI:10.1080/01926230600865549|DOI:10.3791/50951|PearseG|Normalstructure,functionandhistologyofthethymus|ToxicolPathol|2006;34(5):504-14|doi:10|1080/01926230600865549|PMID:17067941| Thymus +UBERON:0003846 thymus epithelium thymus epithelium CL:0009075 myo-medullary thymic epithelial cell myo-medullary thymic epithelial cell HGNC:11529, HGNC:11946, HGNC:11950, HGNC:12011, HGNC:12403, HGNC:129, HGNC:16905, HGNC:1799, HGNC:29824, HGNC:7612, HGNC:7720, HGNC:7860, HGNC:9666 DOI:10.1126/science.aay3224|DOI:10.1038/s41467-021-21346-6|DOI:10.1080/01926230600865549|DOI:10.3791/50951|PearseG|Normalstructure,functionandhistologyofthethymus|ToxicolPathol|2006;34(5):504-14|doi:10|1080/01926230600865549|PMID:17067941| Thymus +UBERON:0003846 thymus epithelium thymus epithelium CL:0009076 neuro-medullary thymic epithelial cell neuro-medullary thymic epithelial cell HGNC:1036, HGNC:11506, HGNC:11529, HGNC:1461, HGNC:1799, HGNC:18254, HGNC:2045, HGNC:24579, HGNC:26735, HGNC:6836, HGNC:7860, HGNC:9666 DOI:10.1126/science.aay3224|DOI:10.1038/s41467-021-21346-6|DOI:10.1080/01926230600865549|DOI:10.3791/50951|PearseG|Normalstructure,functionandhistologyofthethymus|ToxicolPathol|2006;34(5):504-14|doi:10|1080/01926230600865549|PMID:17067941| Thymus +UBERON:0006936 thymus subcapsular epithelium thymus subcapsular epithelium CL:0009077 subcapsular thymic epithelial cell subcapsular cortical epithelial cell HGNC:11881, HGNC:9623 DOI:10.1016/s0065-2776(08)60900-1 Thymus +UBERON:0002384 connective tissue connective tissue CL:0009078 thymic fibroblast type 1 thymic capsular fibroblast HGNC:11220, HGNC:11309, HGNC:1346, HGNC:15847, HGNC:20866, HGNC:26511, HGNC:3011, HGNC:7035, HGNC:9592, HGNC:9630 DOI:10.1126/science.aay3224 Thymus +UBERON:0002384 connective tissue connective tissue CL:0009079 thymic fibroblast type 2 thymic interlobular fibroblast HGNC:2191, HGNC:2197, HGNC:2198, HGNC:2201, HGNC:3603, HGNC:3778, HGNC:5475, HGNC:6724, HGNC:7060, HGNC:8126 DOI:10.1126/science.aay3224 Thymus +UBERON:0006936 thymus subcapsular epithelium thymus subcapsular epithelium CL:0009081 specified double negative thymocyte double negative thymocyte 2 HGNC:11241, HGNC:11639, HGNC:13222, HGNC:1662, HGNC:1674, HGNC:1681, HGNC:1685, HGNC:1695, HGNC:1695, HGNC:1699, HGNC:21290, HGNC:7154 DOI:10.1016/j.immuni.2020.03.019|DOI:10.3389/fimmu.2019.00447.|LavaertM,LiangKL,VandammeN,ParkJE,RoelsJ,KowalczykMS,LiB,AshenbergO,TabakaM,DionneD,TickleTL,SlyperM,Rozenblatt-RosenO,VandekerckhoveB,LeclercqG,RegevA,VanVlierbergheP,GuilliamsM,TeichmannSA,SaeysY,TaghonT|IntegratedscRNA-SeqIdentifiesHumanPostnatalThymusSeedingProgenitorsandRegulatoryDynamicsofDifferentiatingImmatureThymocytes|Immunity|2020Jun16;52(6):1088-1104|e6|doi:10|1016/j|immuni|2020|03|019|Epub2020Apr17|PMID:32304633| Thymus +UBERON:0006936 thymus subcapsular epithelium thymus subcapsular epithelium CL:0009082 committed double negative thymocyte double negative thymocyte 3 HGNC:11639, HGNC:13222, HGNC:1662, HGNC:1674, HGNC:1685, HGNC:1695, HGNC:1695, HGNC:1699, HGNC:21290, HGNC:7154, HGNC:9832 DOI:10.1016/j.immuni.2020.03.019|DOI:10.3389/fimmu.2019.00447.|LavaertM,LiangKL,VandammeN,ParkJE,RoelsJ,KowalczykMS,LiB,AshenbergO,TabakaM,DionneD,TickleTL,SlyperM,Rozenblatt-RosenO,VandekerckhoveB,LeclercqG,RegevA,VanVlierbergheP,GuilliamsM,TeichmannSA,SaeysY,TaghonT|IntegratedscRNA-SeqIdentifiesHumanPostnatalThymusSeedingProgenitorsandRegulatoryDynamicsofDifferentiatingImmatureThymocytes|Immunity|2020Jun16;52(6):1088-1104|e6|doi:10|1016/j|immuni|2020|03|019|Epub2020Apr17|PMID:32304633| Thymus +UBERON:0006936 thymus subcapsular epithelium thymus subcapsular epithelium CL:0009083 rearranging double negative thymocyte double negative thymocyte 4 HGNC:11639, HGNC:13222, HGNC:1634, HGNC:1634, HGNC:1674, HGNC:1685, HGNC:1695, HGNC:1695, HGNC:1699, HGNC:21290, HGNC:2983, HGNC:7154, HGNC:9832 DOI:10.1016/j.immuni.2020.03.019|DOI:10.3389/fimmu.2019.00447.|LavaertM,LiangKL,VandammeN,ParkJE,RoelsJ,KowalczykMS,LiB,AshenbergO,TabakaM,DionneD,TickleTL,SlyperM,Rozenblatt-RosenO,VandekerckhoveB,LeclercqG,RegevA,VanVlierbergheP,GuilliamsM,TeichmannSA,SaeysY,TaghonT|IntegratedscRNA-SeqIdentifiesHumanPostnatalThymusSeedingProgenitorsandRegulatoryDynamicsofDifferentiatingImmatureThymocytes|Immunity|2020Jun16;52(6):1088-1104|e6|doi:10|1016/j|immuni|2020|03|019|Epub2020Apr17|PMID:32304633| Thymus +UBERON:0002451 endometrial gland endometrial gland CL:0009084 epithelial cell of endometrial gland endometrial epithelial cell HGNC:11529, HGNC:4015, HGNC:6427, HGNC:6436 DOI:10.1177/1933719118756745|DOI:10.1177/1933719118756745|doi:10.1186/s13287-018-0962-6|DOI:10.1093/humrep/det285 Placenta +UBERON:0003529 respiratory system lymphatic vessel endothelium respiratory system lymphatic vessel endothelium CL:0009086 endothelial cell of respiratory system lymphatic vessel endothelial cell of respiratory system lymphatic vessel HGNC:10620, HGNC:14687, HGNC:14687, HGNC:2047, HGNC:35454, HGNC:7178, HGNC:8823, HGNC:9459, HGNC:9459 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 Lung +UBERON:0008870 pulmonary alveolar parenchyma pulmonary alveolar parenchyma CL:0009089 lung pericyte lung pericyte HGNC:12338, HGNC:12338, HGNC:16232, HGNC:2198, HGNC:24318, HGNC:2466, HGNC:2705, HGNC:6494, HGNC:8804, HGNC:8804 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 Lung +UBERON:0002173 pulmonary alveolar duct pulmonary alveolar duct CL:0009089 lung pericyte lung pericyte HGNC:12338, HGNC:12338, HGNC:16232, HGNC:2198, HGNC:24318, HGNC:2466, HGNC:2705, HGNC:6494, HGNC:8804, HGNC:8804 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 Lung +UBERON:0002299 alveolus of lung alveolus of lung on respiratory bronchiole CL:0009089 lung pericyte lung pericyte HGNC:12338, HGNC:12338, HGNC:16232, HGNC:2198, HGNC:24318, HGNC:2466, HGNC:2705, HGNC:6494, HGNC:8804, HGNC:8804 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 Lung +UBERON:0005463 subcapsular sinus of lymph node Subcapsular Sinus CL:0009103 ymph node marginal reticular cell Marginal Reticular Cell HGNC:10639, HGNC:10639, HGNC:11926, HGNC:12692, HGNC:130, HGNC:2770, HGNC:29602, HGNC:3357, HGNC:8823 DOI:10.1016/j.ajpath.2010.12.039|DOI:10.3389/fimmu.2011.00035|DOI:10.1016/j.jcyt.2017.01.010|LinkA,HardieDL,FavreS,BritschgiMR,AdamsDH,SixtM,CysterJG,BuckleyCD,LutherSA|AssociationofT-zonereticularnetworksandconduitswithectopiclymphoidtissuesinmiceandhumans|AmJPathol|2011Apr;1784:1662-75|doi:10|1016/j|ajpath|2010|12|039|PMID:21435450;PMCID:PMC3070229||FletcherAL,MalhotraD,ActonSE,Lukacs-KornekV,Bellemare-PelletierA,CurryM,ArmantM,TurleySJ|Reproducibleisolationoflymphnodestromalcellsrevealssite-dependentdifferencesinfibroblasticreticularcells|FrontImmunol|2011Sep12;2:35|doi:10|3389/fimmu|2011|00035|PMID:22566825;PMCID:PMC3342056||ValenciaJ,JiménezE,MartínezVG,DelAmoBG,HidalgoL,EntrenaA,Fernández-SevillaLM,DelRíoF,VarasA,VicenteÁ,SacedónR|Characterizationofhumanfibroblasticreticularcellsaspotentialimmunotherapeutictools|Cytotherapy|2017May;195:640-653|doi:10|1016/j|jcyt|2017|01|010|Epub2017Mar2|PMID:28262465| Lymph_node +UBERON:8410053 ymph node germinal center dark zone Dark Zone CL:0009104 B cell zone reticular cell B Cell Zone Reticular Cell HGNC:10672, HGNC:10672, HGNC:11926, HGNC:12692, HGNC:130, HGNC:2770, HGNC:29602, HGNC:8823 NoDOI|DOI:10.1080/01926230600867727|Willard-MackCL|Normalstructure,function,andhistologyoflymphnodes|ToxicolPathol|2006;345:409-24|doi:10|1080/01926230600867727|PMID:17067937| Lymph_node +UBERON:8410067 lymph node interfollicular cortex Interfollicular Cortex CL:0009105 T cell zone reticular cell T Cell Zone Reticular Cell HGNC:10617, HGNC:10617, HGNC:10620, HGNC:10620, HGNC:12692, HGNC:130, HGNC:2770, HGNC:29602, HGNC:6023, HGNC:8823 DOI:10.1016/j.ajpath.2010.12.039|DOI:10.3389/fimmu.2011.00035|DOI:10.1016/j.jcyt.2017.01.010|LinkA,HardieDL,FavreS,BritschgiMR,AdamsDH,SixtM,CysterJG,BuckleyCD,LutherSA|AssociationofT-zonereticularnetworksandconduitswithectopiclymphoidtissuesinmiceandhumans|AmJPathol|2011Apr;1784:1662-75|doi:10|1016/j|ajpath|2010|12|039|PMID:21435450;PMCID:PMC3070229||FletcherAL,MalhotraD,ActonSE,Lukacs-KornekV,Bellemare-PelletierA,CurryM,ArmantM,TurleySJ|Reproducibleisolationoflymphnodestromalcellsrevealssite-dependentdifferencesinfibroblasticreticularcells|FrontImmunol|2011Sep12;2:35|doi:10|3389/fimmu|2011|00035|PMID:22566825;PMCID:PMC3342056||ValenciaJ,JiménezE,MartínezVG,DelAmoBG,HidalgoL,EntrenaA,Fernández-SevillaLM,DelRíoF,VarasA,VicenteÁ,SacedónR|Characterizationofhumanfibroblasticreticularcellsaspotentialimmunotherapeutictools|Cytotherapy|2017May;195:640-653|doi:10|1016/j|jcyt|2017|01|010|Epub2017Mar2|PMID:28262465| Lymph_node +UBERON:8410074 lymph node paracortical sinus Paracortical Sinus CL:0009105 T cell zone reticular cell T Cell Zone Reticular Cell HGNC:10617, HGNC:10617, HGNC:10620, HGNC:10620, HGNC:12692, HGNC:130, HGNC:2770, HGNC:29602, HGNC:6023, HGNC:8823 DOI:10.1016/j.ajpath.2010.12.039|DOI:10.3389/fimmu.2011.00035|DOI:10.1016/j.jcyt.2017.01.010|LinkA,HardieDL,FavreS,BritschgiMR,AdamsDH,SixtM,CysterJG,BuckleyCD,LutherSA|AssociationofT-zonereticularnetworksandconduitswithectopiclymphoidtissuesinmiceandhumans|AmJPathol|2011Apr;1784:1662-75|doi:10|1016/j|ajpath|2010|12|039|PMID:21435450;PMCID:PMC3070229||FletcherAL,MalhotraD,ActonSE,Lukacs-KornekV,Bellemare-PelletierA,CurryM,ArmantM,TurleySJ|Reproducibleisolationoflymphnodestromalcellsrevealssite-dependentdifferencesinfibroblasticreticularcells|FrontImmunol|2011Sep12;2:35|doi:10|3389/fimmu|2011|00035|PMID:22566825;PMCID:PMC3342056||ValenciaJ,JiménezE,MartínezVG,DelAmoBG,HidalgoL,EntrenaA,Fernández-SevillaLM,DelRíoF,VarasA,VicenteÁ,SacedónR|Characterizationofhumanfibroblasticreticularcellsaspotentialimmunotherapeutictools|Cytotherapy|2017May;195:640-653|doi:10|1016/j|jcyt|2017|01|010|Epub2017Mar2|PMID:28262465| Lymph_node +UBERON:0009745 lymph node medullary cord Medullary Cord CL:0009106 medullary reticular cell Medullary Reticular Cell HGNC:10672, HGNC:10672, HGNC:11926, HGNC:12692, HGNC:130, HGNC:2770, HGNC:29602, HGNC:8823 DOI:10.1016/j.ajpath.2010.12.039|DOI:10.3389/fimmu.2011.00035.|DOI:10.1016/j.jcyt.2017.01.010|LinkA,HardieDL,FavreS,BritschgiMR,AdamsDH,SixtM,CysterJG,BuckleyCD,LutherSA|AssociationofT-zonereticularnetworksandconduitswithectopiclymphoidtissuesinmiceandhumans|AmJPathol|2011Apr;1784:1662-75|doi:10|1016/j|ajpath|2010|12|039|PMID:21435450;PMCID:PMC3070229||FletcherAL,MalhotraD,ActonSE,Lukacs-KornekV,Bellemare-PelletierA,CurryM,ArmantM,TurleySJ|Reproducibleisolationoflymphnodestromalcellsrevealssite-dependentdifferencesinfibroblasticreticularcells|FrontImmunol|2011Sep12;2:35|doi:10|3389/fimmu|2011|00035|PMID:22566825;PMCID:PMC3342056||ValenciaJ,JiménezE,MartínezVG,DelAmoBG,HidalgoL,EntrenaA,Fernández-SevillaLM,DelRíoF,VarasA,VicenteÁ,SacedónR|Characterizationofhumanfibroblasticreticularcellsaspotentialimmunotherapeutictools|Cytotherapy|2017May;195:640-653|doi:10|1016/j|jcyt|2017|01|010|Epub2017Mar2|PMID:28262465| Lymph_node +UBERON:8410071 subcapsular sinus ceiling Subcapsular sinus ceiling CL:0009107 lymphatic endothelial cell of subcapsular sinus ceiling Lymphatic Endothelial Cell -Subcapsular Sinus Ceiling HGNC:11924, HGNC:14687, HGNC:1527, HGNC:1527, HGNC:1611, HGNC:1611, HGNC:29602, HGNC:6895, HGNC:7035, HGNC:8021, HGNC:8021, HGNC:8051, HGNC:8514, HGNC:8823, HGNC:9459, HGNC:9666 DOI:10.3389/fcvm.2020.00052|DOI:10.1016/j.immuni.2019.06.027|XiangM,GrossoRA,TakedaA,PanJ,BekkhusT,BruloisK,DermadiD,NordlingS,VanlandewijckM,JalkanenS,UlvmarMH,ButcherEC|ASingle-CellTranscriptionalRoadmapoftheMouseandHumanLymphNodeLymphaticVasculature|FrontCardiovascMed|2020Apr30;7:52|doi:10|3389/fcvm|2020|00052|PMID:32426372;PMCID:PMC7204639||TakedaA,HollménM,DermadiD,PanJ,BruloisKF,KaukonenR,LönnbergT,BoströmP,KoskivuoI,IrjalaH,MiyasakaM,SalmiM,ButcherEC,JalkanenS|Single-CellSurveyofHumanLymphaticsUnveilsMarkedEndothelialCellHeterogeneityandMechanismsofHomingforNeutrophils|Immunity|2019Sep17;513:561-572|e5|doi:10|1016/j|immuni|2019|06|027|Epub2019Aug8|PMID:31402260| Lymph_node +UBERON:8410072 subcapsular sinus floor Subcapsular sinus floor CL:0009108 lymphatic endothelial cell of subcapsular sinus floor Lymphatic Endothelial Cell-Subcapsular Sinus Floor HGNC:10619, HGNC:10642, HGNC:11801, HGNC:11924, HGNC:11924, HGNC:14687, HGNC:1527, HGNC:1611, HGNC:1709, HGNC:17635, HGNC:29602, HGNC:4035, HGNC:4602, HGNC:5344, HGNC:6740, HGNC:6895, HGNC:6895, HGNC:7035, HGNC:8021, HGNC:8514, HGNC:8823, HGNC:9459, HGNC:9666 DOI:10.3389/fcvm.2020.00052|DOI:10.1016/j.immuni.2019.06.027|XiangM,GrossoRA,TakedaA,PanJ,BekkhusT,BruloisK,DermadiD,NordlingS,VanlandewijckM,JalkanenS,UlvmarMH,ButcherEC|ASingle-CellTranscriptionalRoadmapoftheMouseandHumanLymphNodeLymphaticVasculature|FrontCardiovascMed|2020Apr30;7:52|doi:10|3389/fcvm|2020|00052|PMID:32426372;PMCID:PMC7204639||TakedaA,HollménM,DermadiD,PanJ,BruloisKF,KaukonenR,LönnbergT,BoströmP,KoskivuoI,IrjalaH,MiyasakaM,SalmiM,ButcherEC,JalkanenS|Single-CellSurveyofHumanLymphaticsUnveilsMarkedEndothelialCellHeterogeneityandMechanismsofHomingforNeutrophils|Immunity|2019Sep17;513:561-572|e5|doi:10|1016/j|immuni|2019|06|027|Epub2019Aug8|PMID:31402260| Lymph_node +UBERON:8410032 trabecular sinus of lymph node Trabecular sinus CL:0009109 lymphatic endothelial cell of trabecula Lymphatic Endothelial Cell-Trabeculae HGNC:11924, HGNC:14687, HGNC:14687, HGNC:1527, HGNC:1611, HGNC:1611, HGNC:29602, HGNC:6895, HGNC:7035, HGNC:7035, HGNC:8021, HGNC:8021, HGNC:8514, HGNC:8823, HGNC:9459, HGNC:9666 DOI:10.3389/fcvm.2020.00052|DOI:10.1016/j.immuni.2019.06.027|XiangM,GrossoRA,TakedaA,PanJ,BekkhusT,BruloisK,DermadiD,NordlingS,VanlandewijckM,JalkanenS,UlvmarMH,ButcherEC|ASingle-CellTranscriptionalRoadmapoftheMouseandHumanLymphNodeLymphaticVasculature|FrontCardiovascMed|2020Apr30;7:52|doi:10|3389/fcvm|2020|00052|PMID:32426372;PMCID:PMC7204639||TakedaA,HollménM,DermadiD,PanJ,BruloisKF,KaukonenR,LönnbergT,BoströmP,KoskivuoI,IrjalaH,MiyasakaM,SalmiM,ButcherEC,JalkanenS|Single-CellSurveyofHumanLymphaticsUnveilsMarkedEndothelialCellHeterogeneityandMechanismsofHomingforNeutrophils|Immunity|2019Sep17;513:561-572|e5|doi:10|1016/j|immuni|2019|06|027|Epub2019Aug8|PMID:31402260| Lymph_node +UBERON:0005463 subcapsular sinus of lymph node Subcapsular Sinus CL:0009110 lymphatic endothelial cell of medulla ceiling Lymphatic Endothelial Cell of Medulla Ceiling HGNC:11924, HGNC:14687, HGNC:14687, HGNC:1527, HGNC:1611, HGNC:1611, HGNC:29602, HGNC:6895, HGNC:7035, HGNC:7035, HGNC:8021, HGNC:8021, HGNC:8514, HGNC:8823, HGNC:9459, HGNC:9666 DOI:10.3389/fcvm.2020.00052|DOI:10.1016/j.immuni.2019.06.027|XiangM,GrossoRA,TakedaA,PanJ,BekkhusT,BruloisK,DermadiD,NordlingS,VanlandewijckM,JalkanenS,UlvmarMH,ButcherEC|ASingle-CellTranscriptionalRoadmapoftheMouseandHumanLymphNodeLymphaticVasculature|FrontCardiovascMed|2020Apr30;7:52|doi:10|3389/fcvm|2020|00052|PMID:32426372;PMCID:PMC7204639||TakedaA,HollménM,DermadiD,PanJ,BruloisKF,KaukonenR,LönnbergT,BoströmP,KoskivuoI,IrjalaH,MiyasakaM,SalmiM,ButcherEC,JalkanenS|Single-CellSurveyofHumanLymphaticsUnveilsMarkedEndothelialCellHeterogeneityandMechanismsofHomingforNeutrophils|Immunity|2019Sep17;513:561-572|e5|doi:10|1016/j|immuni|2019|06|027|Epub2019Aug8|PMID:31402260| Lymph_node +UBERON:8410052 lymph node germinal center light zone Light Zone CL:0009111 centrocyte Centrocyte HGNC:1001, HGNC:1001, HGNC:1060, HGNC:11922, HGNC:1633, HGNC:1667, HGNC:1703, HGNC:2336, HGNC:5480, HGNC:7107, HGNC:7107, HGNC:7154, HGNC:7315, HGNC:7315, HGNC:990 NoDOI|DOI:10.1182/blood-2012-03-415380|NoDOI|VictoraGD,Dominguez-SolaD,HolmesAB,DeroubaixS,Dalla-FaveraR,NussenzweigMC|IdentificationofhumangerminalcenterlightanddarkzonecellsandtheirrelationshiptohumanB-celllymphomas|Blood|2012Sep13;12011:2240-8|doi:10|1182/blood-2012-03-415380|Epub2012Jun26|Erratumin:Blood|2015Sep3;12610:1262|PMID:22740445;PMCID:PMC3447782| Lymph_node +UBERON:8410053 ymph node germinal center dark zone Dark Zone CL:0009112 centroblast Centroblast HGNC:1001, HGNC:1001, HGNC:11922, HGNC:11922, HGNC:13203, HGNC:1633, HGNC:1633, HGNC:1667, HGNC:1697, HGNC:2561, HGNC:2561, HGNC:5480, HGNC:6642, HGNC:7107, HGNC:7107, HGNC:7154, HGNC:7315, HGNC:7315, HGNC:990 NODOI|NoDOI|DOI:10.1182/blood-2012-03-415380|HsuSM,JaffeES|PhenotypicexpressionofB-lymphocytes|2|Immunoglobulinexpressionofgerminalcentercells|AmJPathol|1984Mar;1143:396-402|PMID:6364822;PMCID:PMC1900414||VictoraGD,Dominguez-SolaD,HolmesAB,DeroubaixS,Dalla-FaveraR,NussenzweigMC|IdentificationofhumangerminalcenterlightanddarkzonecellsandtheirrelationshiptohumanB-celllymphomas|Blood|2012Sep13;12011:2240-8|doi:10|1182/blood-2012-03-415380|Epub2012Jun26|Erratumin:Blood|2015Sep3;12610:1262|PMID:22740445;PMCID:PMC3447782| Lymph_node +UBERON:0005196 spleen germinal center Germinal Center CL:0009113 T follicular regulatory cell T Follicular Regulatory Cell HGNC:1060, HGNC:1060, HGNC:1674, HGNC:1678, HGNC:6008, HGNC:6008, HGNC:6106, HGNC:6106, HGNC:8760, HGNC:8760 DOI:10.1371/journal.pone.0140978 Spleen +UBERON:8410067 lymph node interfollicular cortex Interfollicular Cortex CL:0009113 T follicular regulatory cell T Follicular Regulatory Cell HGNC:1060, HGNC:1673, HGNC:1675, HGNC:1678, HGNC:1678, HGNC:6008, HGNC:6008, HGNC:6106, HGNC:6106 DOI:10.1172/JCI200422325|DOI:10.1084/jem.20171940|LimHW,HillsamerP,KimCH|RegulatoryTcellscanmigratetofolliclesuponTcellactivationandsuppressGC-ThcellsandGC-Thcell-drivenBcellresponses|JClinInvest|2004Dec;11411:1640-9|doi:10|1172/JCI22325|Erratumin:JClinInvest|2005Jan;1151:195|PMID:15578096;PMCID:PMC529283||SayinI,RadtkeAJ,VellaLA,JinW,WherryEJ,BuggertM,BettsMR,HeratiRS,GermainRN,CanadayDH|SpatialdistributionandfunctionofTfollicularregulatorycellsinhumanlymphnodes|JExpMed|2018Jun4;2156:1531-1542|doi:10|1084/jem|20171940|Epub2018May16|PMID:29769249;PMCID:PMC5987920| Lymph_node +UBERON:8410052 lymph node germinal center light zone Light Zone CL:0009113 T follicular regulatory cell T Follicular Regulatory Cell HGNC:1060, HGNC:1673, HGNC:1675, HGNC:1678, HGNC:1678, HGNC:6008, HGNC:6008, HGNC:6106, HGNC:6106 DOI:10.1172/JCI200422325|DOI:10.1084/jem.20171940|LimHW,HillsamerP,KimCH|RegulatoryTcellscanmigratetofolliclesuponTcellactivationandsuppressGC-ThcellsandGC-Thcell-drivenBcellresponses|JClinInvest|2004Dec;11411:1640-9|doi:10|1172/JCI22325|Erratumin:JClinInvest|2005Jan;1151:195|PMID:15578096;PMCID:PMC529283||SayinI,RadtkeAJ,VellaLA,JinW,WherryEJ,BuggertM,BettsMR,HeratiRS,GermainRN,CanadayDH|SpatialdistributionandfunctionofTfollicularregulatorycellsinhumanlymphnodes|JExpMed|2018Jun4;2156:1531-1542|doi:10|1084/jem|20171940|Epub2018May16|PMID:29769249;PMCID:PMC5987920| Lymph_node +UBERON:8410075 lymph node paracortical cord Paracortical Cord CL:0009114 monocytoid B Cell Monocytoid B Cell HGNC:11922, HGNC:13203, HGNC:13203, HGNC:1633, HGNC:1633, HGNC:24692, HGNC:5541 NODOI|DOI:10.1038/s41573-020-00092-2|SteinK,HummelM,KorbjuhnP,FossHD,AnagnostopoulosI,MarafiotiT,SteinH|MonocytoidBcellsaredistinctfromsplenicmarginalzonecellsandcommonlyderivefromunmutatednaiveBcellsandlessfrequentlyfrompostgerminalcenterBcellsbypolyclonaltransformation|Blood|1999Oct15;948:2800-8|PMID:10515883||LeeDSW,RojasOL,GommermanJL|Bcelldepletiontherapiesinautoimmunedisease:advancesandmechanisticinsights|NatRevDrugDiscov|2020Dec15:1–21|doi:10|1038/s41573-020-00092-2|Epubaheadofprint|PMID:33324003;PMCID:PMC7737718| Lymph_node +UBERON:0002049 vasculature vasculature CL:0010008 cardiac endothelial cell endothelial cell HGNC:12726, HGNC:1764, HGNC:8823 Heart +UBERON:0000956 cerebral cortex cerebral cortex CL:0010012 cerebral cortex neuron cerebral cortex neuron HGNC:26563 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:0010012 cerebral cortex neuron cerebral cortex neuron HGNC:1183, HGNC:12338, HGNC:13010 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:0010012 cerebral cortex neuron cerebral cortex neuron HGNC:2705, HGNC:48603 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:0010012 cerebral cortex neuron cerebral cortex neuron HGNC:13542, HGNC:3446, HGNC:8569 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:0010012 cerebral cortex neuron cerebral cortex neuron HGNC:54272 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:0010012 cerebral cortex neuron cerebral cortex neuron HGNC:10259, HGNC:1686, HGNC:3488 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:0010012 cerebral cortex neuron cerebral cortex neuron HGNC:13542, HGNC:3446, HGNC:8569 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:0010012 cerebral cortex neuron cerebral cortex neuron HGNC:10259, HGNC:1686, HGNC:3488 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:0010012 cerebral cortex neuron cerebral cortex neuron HGNC:53175, HGNC:53225 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:0010012 cerebral cortex neuron cerebral cortex neuron HGNC:54272 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:0010012 cerebral cortex neuron cerebral cortex neuron HGNC:53175, HGNC:53225 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:0010012 cerebral cortex neuron cerebral cortex neuron HGNC:1183, HGNC:12338, HGNC:13010 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:0010012 cerebral cortex neuron cerebral cortex neuron HGNC:2705, HGNC:48603 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:0010012 cerebral cortex neuron cerebral cortex neuron HGNC:26563 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002444 lens Fiber lens Fiber CL:0011004 lens fiber cell lens fiber cell HGNC:12692 DOI:10.1167/iovs.15-18117 Eye +UBERON:0002444 lens Fiber lens Fiber CL:0011004 lens fiber cell lens fiber cell HGNC:12692 DOI:10.1167/iovs.15-18117 multi_loc +UBERON:0002444 lens fiber lens Fibers CL:0011004 lens fiber cell lens fiber cell HGNC:7103 multi_loc +UBERON:0002444 lens fiber lens Fibers CL:0011004 lens fiber cell lens fiber cell HGNC:7103 Eye +UBERON:0001791 inner nuclear layer of retina inner nuclear layer CL:0011005 GABAergic interneuron GABAergic interneuron HGNC:10575, HGNC:11329, HGNC:11526, HGNC:11528, HGNC:11782, HGNC:12693, HGNC:16941, HGNC:1912, HGNC:24323, HGNC:4093, HGNC:7955, HGNC:9726 DOI:10.1016/j.preteyeres.2020.100844|DOI:10.1002/(SICI)1096-9861(19990816)411:1<19::AID-CNE3>3.0.CO;2-4|DOI:10.1002/cne.902760106 Eye +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0011031 monocyte-derived dendritic cell Monocyte-Derived DC HGNC:3619, HGNC:6152 DOI:10.4049/jimmunol.1002632 Spleen +UBERON:0005353 spleen perifollicular zone Perifollicular Zone CL:0011031 monocyte-derived dendritic cell Monocyte-Derived DC HGNC:3619, HGNC:6152 DOI:10.4049/jimmunol.1002632 Spleen +UBERON:0034729 sympathetic nerve Sympathetic nerve CL:0011103 sympathetic neuron Sympathetic Neuron HGNC:12513, HGNC:12513, HGNC:7656, HGNC:7656 DOI:10.1046/j.1469-7580.1999.19410143.x|PanuncioAL,DeLaPeñaS,GualcoG,ReissenweberN|Adrenergicinnervationinreactivehumanlymphnodes|JAnat|1999Jan;194Pt1Pt1:143-6|doi:10|1046/j|1469-7580|1999|19410143|x|PMID:10227676;PMCID:PMC1467902 Lymph_node +UBERON:0002009 pulmonary nerve plexus pulmonary nerve plexus CL:0011103 sympathetic neuron sympathetic neuron HGNC:20772 Lung +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0012000 astrocyte of the forebrain astrocyte of the forebrain HGNC:3690, HGNC:42700, HGNC:43960, HGNC:5318 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0012000 astrocyte of the forebrain astrocyte of the forebrain HGNC:18081, HGNC:18374, HGNC:3690 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0012000 astrocyte of the forebrain astrocyte of the forebrain HGNC:14404, HGNC:27725, HGNC:42700, HGNC:4319 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0012000 astrocyte of the forebrain astrocyte of the forebrain HGNC:14404, HGNC:27725, HGNC:42700, HGNC:4319 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0012000 astrocyte of the forebrain astrocyte of the forebrain HGNC:18081, HGNC:18374, HGNC:3690 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0012000 astrocyte of the forebrain astrocyte of the forebrain HGNC:3690, HGNC:42700, HGNC:43960, HGNC:5318 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0012001 neuron of the forebrain neuron of the forebrain HGNC:14454, HGNC:6694 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0012001 neuron of the forebrain neuron of the forebrain HGNC:51128, HGNC:52704, HGNC:54138 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0012001 neuron of the forebrain neuron of the forebrain HGNC:11191, HGNC:29426, HGNC:44222 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0012001 neuron of the forebrain neuron of the forebrain HGNC:51128, HGNC:52704, HGNC:54138 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0012001 neuron of the forebrain neuron of the forebrain HGNC:14454, HGNC:6694 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0012001 neuron of the forebrain neuron of the forebrain HGNC:11191, HGNC:29426, HGNC:44222 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0012001 neuron of the forebrain neuron of the forebrain HGNC:2705, HGNC:4565 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0012001 neuron of the forebrain neuron of the forebrain HGNC:2705, HGNC:4565 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002339 epithelium of lobar bronchus lobar bronchial epithelium CL:0017000 pulmonary ionocyte pulmonary ionocyte HGNC:11529, HGNC:16512, HGNC:1748, HGNC:1884, HGNC:2027, HGNC:20657, HGNC:3318, HGNC:3815, HGNC:4027, HGNC:740 Lung +UBERON:0002341 epithelium of segmental bronchus segmental bronchial epithelium CL:0017000 pulmonary ionocyte pulmonary ionocyte HGNC:11529, HGNC:16512, HGNC:1748, HGNC:1884, HGNC:2027, HGNC:20657, HGNC:3318, HGNC:3815, HGNC:4027, HGNC:740 Lung +UBERON:0003952 anterior stroma of cornea anterior stroma of cornea CL:0017004 telocyte telocyte HGNC:8803 DOI:10.1111/jcmm.13270 Eye +UBERON:0006566 left ventricle myocardium myocardium CL:0017004 telocyte telocyte (interstitial like cell of cajal) HGNC:12692, HGNC:1662 Heart +UBERON:0001335 prostatic urethra prostatic urethra CL:0017011 hillock cell of prostatic urethral epithelium hillock cell of prostatic urethra HGNC:24880, HGNC:384, HGNC:6415 doi:10.1002/path.5751 Prostate +UBERON:0001956 cartilage of bronchus cartilage of bronchus CL:0019002 tracheobronchial chondrocyte tracheobronchial chondrocyte HGNC:2198, HGNC:2200, HGNC:2200, HGNC:2705, HGNC:7035 Lung +UBERON:0002341 epithelium of segmental bronchus segmental bronchial epithelium CL:0019003 tracheobronchial goblet cell tracheobronchial goblet cell HGNC:11529, HGNC:11756, HGNC:16438, HGNC:17257, HGNC:1748, HGNC:20657, HGNC:328, HGNC:328, HGNC:3318, HGNC:4027, HGNC:7515, HGNC:7515, HGNC:7516, HGNC:8659 Lung +UBERON:0002405 immune system immune system of respiratory tract CL:0019015 lung parenchyma resident eosinophil lung parenchyma resident eosinophil HGNC:10046, HGNC:1602, HGNC:1604, HGNC:1686, HGNC:1709, HGNC:2252, HGNC:3423, HGNC:9666, HGNC:9666 Lung +UBERON:0001473 lymphatic vessel Lymphatic Vessels CL:0019017 Lymphatic vessel smooth muscle cell Smooth Muscle Cell HGNC:130, HGNC:130 DOI:10.1038/s41577-020-0281-x|DOI:10.1002/cphy.c180015|JalkanenS,SalmiM|Lymphaticendothelialcellsofthelymphnode|NatRevImmunol|2020Sep;209:566-578|doi:10|1038/s41577-020-0281-x|Epub2020Feb24|PMID:32094869||BreslinJW,YangY,ScallanJP,SweatRS,AdderleySP,MurfeeWL|LymphaticVesselNetworkStructureandPhysiology|ComprPhysiol|2018Dec13;91:207-299|doi:10|1002/cphy|c180015|PMID:30549020;PMCID:PMC6459625| Lymph_node +UBERON:0010397 efferent lymphatic vessel Efferent Lymphatics CL:0019017 lymphatic vessel smooth muscle cell Smooth Muscle Cell HGNC:130, HGNC:130 DOI:10.1038/s41577-020-0281-x|NoDOI|OhtaniO,OhtaniY|Recentdevelopmentsinmorphologyoflymphaticvesselsandlymphnodes|AnnVascDis|2012;52:145-50|doi:10|3400/avd|ra|11|00099|PMID:23555502;PMCID:PMC3595868||Toccanier-PelteMF,SkalliO,KapanciY,GabbianiG|Characterizationofstromalcellswithmyoidfeaturesinlymphnodesandspleeninnormalandpathologicconditions|AmJPathol|1987Oct;1291:109-18|PMID:3310649;PMCID:PMC1899700| Lymph_node +UBERON:0003517 kidney blood vessel Kidney Blood Vessel CL:0019018 blood vessel smooth muscle cell Vascular Smooth Muscle Cell HGNC:10002, HGNC:12692, HGNC:130, HGNC:15710, HGNC:277, HGNC:6934, HGNC:7569, HGNC:8033 Kidney +UBERON:0001193 hepatic artery hepatic artery CL:0019018 blood vessel smooth muscle cell smooth muscle cell HGNC:130, HGNC:130 Liver +UBERON:0012416 respiratory system arterial smooth muscle arterial system smooth muscle CL:0019018 blood vessel smooth muscle cell blood vessel smooth muscle cell HGNC:2198, HGNC:2705, HGNC:4881, HGNC:7035, HGNC:7883, HGNC:8033, HGNC:9080 Lung +UBERON:0012418 respiratory system venous smooth muscle venous system smooth muscle CL:0019018 blood vessel smooth muscle cell blood vessel smooth muscle cell HGNC:2198, HGNC:2705, HGNC:4881, HGNC:7035, HGNC:7883, HGNC:8033, HGNC:9080 Lung +UBERON:0004884 lobar bronchus mesenchyme bronchial mesenchyme CL:0019019 tracheobronchial smooth muscle cell tracheobronchial smooth muscle HGNC:11553, HGNC:130, HGNC:130, HGNC:16122, HGNC:19719, HGNC:19719, HGNC:2155, HGNC:2155, HGNC:2198, HGNC:2705, HGNC:2770, HGNC:7035, HGNC:7569, HGNC:9080 Lung +UBERON:0005452 hepatic cord hepatic plate CL:0019026 periportal region hepatocyte periportal hepatocyte HGNC:2611, HGNC:2611, HGNC:4806, HGNC:4806 DOI:10.1053/j.gastro.2009.02.063|DOI:10.1038/s42255-019-0109-9 Liver +UBERON:0005452 hepatic cord hepatic plate CL:0019028 midzonal region hepatocyte mid zone hepatocyte HGNC:2611, HGNC:2637, HGNC:4806 Liver +UBERON:0005452 hepatic cord hepatic plate CL:0019029 centrilobular region hepatocyte pericentral hepatocyte HGNC:2637, HGNC:2637, HGNC:4341, HGNC:4341 DOI:10.1053/j.gastro.2009.02.063|DOI:10.1038/ncb3337|DOI:10.1038/nature14863 Liver +UBERON:0022281 epithelium of crypt of Lieberkuhn of large intestine epithelium CL:0019032 intestinal tuft cell tuft cell HGNC:14323, HGNC:14323, HGNC:19864, HGNC:19864, HGNC:20412, HGNC:20412, HGNC:2700, HGNC:2700, HGNC:9604, HGNC:9604 DOI:10.1038/s42003-020-01181-z|DOI:10.1038/s41598-019-53997-3|DOI:10.4049/jimmunol.1801069|PMID:32814826PMCID:PMC7438495|PMID:31767912PMCID:PMC6877571|PMID:30782851PMCID:PMC6383804 Large_intestine +UBERON:0011184 epithelium of crypt of Lieberkuhn epithelium CL:0019032 intestinal tuft cell tuft cell HGNC:14323, HGNC:14323, HGNC:19864, HGNC:19864, HGNC:20412, HGNC:20412, HGNC:2700, HGNC:2700, HGNC:9604, HGNC:9604 DOI:10.1038/s42003-020-01181-z|DOI:10.1038/s41598-019-53997-3|DOI:10.4049/jimmunol.1801069|PMID:32814826PMCID:PMC7438495|PMID:31767912PMCID:PMC6877571|PMID:30782851PMCID:PMC6383804 Large_intestine +UBERON:0002341 epithelium of segmental bronchus segmental bronchial epithelium CL:1000223 lung neuroendocrine cell lung neuroendocrine cell HGNC:11529, HGNC:1437, HGNC:1437, HGNC:1748, HGNC:1757, HGNC:1929, HGNC:3318, HGNC:4027, HGNC:4605, HGNC:4605, HGNC:738, HGNC:8008 Lung +UBERON:0002051 epithelium of bronchiole epithelium of bronchiole CL:1000271 lung ciliated cell lung ciliated cell HGNC:11529, HGNC:12371, HGNC:15467, HGNC:1748, HGNC:20657, HGNC:20771, HGNC:26308, HGNC:3318, HGNC:34527, HGNC:3816, HGNC:3816, HGNC:4027 Lung +UBERON:0001958 terminal bronchiole epithelium terminal bronchiole epithelium CL:1000271 lung ciliated cell lung ciliated cell HGNC:11529, HGNC:12371, HGNC:15467, HGNC:1748, HGNC:20657, HGNC:20771, HGNC:26308, HGNC:3318, HGNC:34527, HGNC:3816, HGNC:3816, HGNC:4027 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 Lung +UBERON:0001955 epithelium of respiratory bronchiole epithelium of respiratory bronchiole CL:1000271 lung ciliated cell lung ciliated cell HGNC:11529, HGNC:12371, HGNC:15467, HGNC:1748, HGNC:20657, HGNC:20771, HGNC:26308, HGNC:3318, HGNC:34527, HGNC:3816, HGNC:3816, HGNC:4027 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 Lung +UBERON:0012399 large intestine smooth muscle longitudinal layer longitudinal muscle layer CL:1000279 smooth muscle cell of large intestine muscle HGNC:11126, HGNC:11126, HGNC:130, HGNC:130 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 Large_intestine +UBERON:0012398 large intestine smooth muscle circular layer circular muscle layer CL:1000279 smooth muscle cell of large intestine muscle HGNC:11126, HGNC:11126, HGNC:130, HGNC:130 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 Large_intestine +UBERON:0004184 prostate gland stroma prostate stroma CL:1000299 fibroblast of connective tissue of prostate interstitial fibroblast HGNC:1346, HGNC:2705, HGNC:7035 doi:10.1002/path.5751 Prostate +UBERON:0004184 prostate gland stroma prostate stroma CL:1000301 fibroblast of subepithelial connective tissue of prostatic gland periepithelial fibroblast HGNC:2705, HGNC:612, HGNC:9592 doi:10.1002/path.5751 Prostate +UBERON:0001253 lamina propria of ureter lamina propria of ureter CL:1000308 fibrocyte of adventitia of ureter fibroblast HGNC:1346, HGNC:2705, HGNC:3011 multi_loc +UBERON:0001253 lamina propria of ureter lamina propria of ureter CL:1000308 fibrocyte of adventitia of ureter fibroblast HGNC:21245, HGNC:2705, HGNC:29673 multi_loc +UBERON:0001253 lamina propria of ureter lamina propria of ureter CL:1000308 fibrocyte of adventitia of ureter fibroblast HGNC:21245, HGNC:2705, HGNC:29673 Ureter +UBERON:0001253 lamina propria of ureter lamina propria of ureter CL:1000308 fibrocyte of adventitia of ureter fibroblast HGNC:1346, HGNC:2705, HGNC:3011 Ureter +UBERON:0002348 epicardium Epicardium CL:1000309 epicardial adipocyte adipocyte HGNC:24865, HGNC:3594, HGNC:6553 Heart +UBERON:0011184 epithelium of crypt of Lieberkuhn epithelium CL:1000321 large intestine crypt goblet cell goblet HGNC:20412, HGNC:20412, HGNC:7512, HGNC:7512 DOI:10.1038/s42003-020-01181-z|PMID:32814826PMCID:PMC7438495 Large_intestine +UBERON:0000397 colonic epithelium epithelium CL:1000321 large intestine crypt goblet cell goblet HGNC:20412, HGNC:20412, HGNC:7512, HGNC:7512 DOI:10.1038/s42003-020-01181-z|PMID:32814826PMCID:PMC7438495 Large_intestine +UBERON:0022281 epithelium of crypt of Lieberkuhn of large intestine epithelium CL:1000321 large intestine crypt goblet cell goblet HGNC:20412, HGNC:20412, HGNC:7512, HGNC:7512 DOI:10.1038/s42003-020-01181-z|PMID:32814826PMCID:PMC7438495 Large_intestine +UBERON:0014726 intercalated duct of pancreas Intercalated duct CL:1000322 pancreatic goblet cell Pancreatic goblet cell HGNC:7512 Pancreas +UBERON:0008346 duodenal epithelium Epithelium CL:1000344 paneth cell of epithelium proper of small intestine Paneth cell HGNC:2764, HGNC:6740 DOI:10.1016/j.celrep.2021.108819 Small_intestine +UBERON:0001958 terminal bronchiole epithelium terminal bronchiole epithelium CL:1000350 basal cell of epithelium of terminal bronchiole basal cell of epithelium of terminal bronchiole HGNC:11529, HGNC:12338, HGNC:15979, HGNC:15979, HGNC:1748, HGNC:20657, HGNC:3318, HGNC:4027, HGNC:6442, HGNC:6442, HGNC:7809, HGNC:7809 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 Lung +UBERON:0001955 epithelium of respiratory bronchiole epithelium of respiratory bronchiole CL:1000351 basal cell of epithelium of respiratory bronchiole basal cell of epithelium of respiratory bronchiole HGNC:11200, HGNC:11529, HGNC:12523, HGNC:12523, HGNC:1748, HGNC:18391, HGNC:18391, HGNC:20657, HGNC:3318, HGNC:4027, HGNC:6359 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 Lung +UBERON:0002051 epithelium of bronchiole epithelium of bronchiole CL:1000352 basal cell of epithelium of lobular bronchiole basal cell of epithelium of lobular bronchiole HGNC:11529, HGNC:12338, HGNC:15979, HGNC:15979, HGNC:1748, HGNC:20657, HGNC:3318, HGNC:4027, HGNC:6442, HGNC:6442, HGNC:7809, HGNC:7809 Lung +UBERON:0001281 hepatic sinusoid hepatic sinusoid CL:1000398 endothelial cell of hepatic sinusoid liver sinusoid endothelial cell HGNC:1662, HGNC:3349, HGNC:3349, HGNC:8823, HGNC:8823 DOI:10.3748/wjg.v12.i34.5429|https://www|ncbi|nlm|nih|gov/pmc/articles/PMC4088223/ Liver +UBERON:0012399 large intestine smooth muscle longitudinal layer longitudinal muscle layer CL:1000412 endothelial cell of arteriole arteriole endothelium HGNC:1662, HGNC:1662, HGNC:1663, HGNC:1663, HGNC:8823, HGNC:8823 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 Large_intestine +UBERON:0004927 submucosa of cecum submucosa CL:1000412 endothelial cell of arteriole arteriole endothelium HGNC:1662, HGNC:1662, HGNC:1663, HGNC:1663, HGNC:8823, HGNC:8823 NoDOI Large_intestine +UBERON:0012375 subserosa subserosa CL:1000412 endothelial cell of arteriole arteriole endothelium HGNC:1662, HGNC:1662, HGNC:1663, HGNC:1663, HGNC:8823, HGNC:8823 NoDOI Large_intestine +UBERON:0002439 myenteric nerve plexus myenteric plexus of Auerbach CL:1000412 endothelial cell of arteriole arteriole endothelium HGNC:1662, HGNC:1662, HGNC:1663, HGNC:1663, HGNC:8823, HGNC:8823 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 Large_intestine +UBERON:0003329 submucosa of anal canal submucosa CL:1000412 endothelial cell of arteriole arteriole endothelium HGNC:1662, HGNC:1662, HGNC:1663, HGNC:1663, HGNC:8823, HGNC:8823 NoDOI Large_intestine +UBERON:0012398 large intestine smooth muscle circular layer circular muscle layer CL:1000412 endothelial cell of arteriole arteriole endothelium HGNC:1662, HGNC:1662, HGNC:1663, HGNC:1663, HGNC:8823, HGNC:8823 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 Large_intestine +UBERON:0003331 submucosa of colon submucosa CL:1000412 endothelial cell of arteriole arteriole endothelium HGNC:1662, HGNC:1662, HGNC:1663, HGNC:1663, HGNC:8823, HGNC:8823 NoDOI Large_intestine +UBERON:0006134 nerve fiber vessel CL:1000412 endothelial cell of arteriole arteriole endothelial cell HGNC:1662, HGNC:1662, HGNC:1663, HGNC:1663, HGNC:8823, HGNC:8823 NoDOI Large_intestine +UBERON:0000055 vessel vessel CL:1000412 endothelial cell of arteriole arteriole endothelial cell HGNC:1662, HGNC:1662, HGNC:1663, HGNC:1663, HGNC:8823, HGNC:8823 NoDOI Large_intestine +UBERON:0005742 adventitia adventitia CL:1000412 endothelial cell of arteriole arteriole endothelium HGNC:1662, HGNC:1662, HGNC:1663, HGNC:1663, HGNC:8823, HGNC:8823 NoDOI Large_intestine +UBERON:0006958 great cardiac vein great cardiac vein CL:1000413 endothelial cell of artery endothelial cell HGNC:12726, HGNC:1764, HGNC:8823 Heart +UBERON:0002094 interventricular septum septum CL:1000413 endothelial cell of artery endothelial cell HGNC:12726, HGNC:1764, HGNC:8823 Heart +UBERON:0035422 circumflex branch of left coronary artery left circumflex artery CL:1000413 endothelial cell of artery endothelial cell HGNC:12726, HGNC:1764, HGNC:8823 Heart +UBERON:0001625 right coronary artery right coronary artery CL:1000413 endothelial cell of artery endothelial cell HGNC:12726, HGNC:1764, HGNC:8823 Heart +UBERON:0035374 small cardiac vein small cardiac vein CL:1000413 endothelial cell of artery endothelial cell HGNC:12726, HGNC:1764, HGNC:8823 Heart +UBERON:0001194 splenic artery Splenic Artery CL:1000413 endothelial cell of artery Blood Endothelial Cells HGNC:11784, HGNC:12726, HGNC:1662, HGNC:1662, HGNC:8823, HGNC:8823 DOI:10.1007/s00418-007-0320-8|DOI:10.1016/j.aanat.2019.05.004|DOI10.1182/bloodadvances.2017015073 Spleen +UBERON:0005438 coronary sinus coronary sinus CL:1000413 endothelial cell of artery endothelial cell HGNC:12726, HGNC:1764, HGNC:8823 Heart +UBERON:0001193 hepatic artery hepatic artery CL:1000413 endothelial cell of artery endothelial cell HGNC:1662, HGNC:1662, HGNC:8823, HGNC:8823 DOI:10.1038/srep44356 Liver +UBERON:0004848 respiratory system arterial endothelium respiratory system arterial endothelium CL:1000413 endothelial cell of artery endothelial cell of artery HGNC:18122, HGNC:19832, HGNC:2047, HGNC:2892, HGNC:3227, HGNC:35454, HGNC:4279, HGNC:4880, HGNC:7884 Lung +UBERON:0009687 middle cardiac vein middle cardiac vein CL:1000413 endothelial cell of artery endothelial cell HGNC:12726, HGNC:1764, HGNC:8823 Heart +UBERON:0012375 subserosa subserosa CL:1000414 endothelial cell of venule venule endothelium HGNC:1662, HGNC:1662, HGNC:1663, HGNC:1663, HGNC:8823, HGNC:8823 NoDOI Large_intestine +UBERON:0003331 submucosa of colon submucosa CL:1000414 endothelial cell of venule venule endothelium HGNC:1662, HGNC:1662, HGNC:1663, HGNC:1663, HGNC:8823, HGNC:8823 NoDOI Large_intestine +UBERON:0003329 submucosa of anal canal submucosa CL:1000414 endothelial cell of venule venule endothelium HGNC:1662, HGNC:1662, HGNC:1663, HGNC:1663, HGNC:8823, HGNC:8823 NoDOI Large_intestine +UBERON:0012398 large intestine smooth muscle circular layer circular muscle layer CL:1000414 endothelial cell of venule venule endothelium HGNC:1662, HGNC:1662, HGNC:1663, HGNC:1663, HGNC:8823, HGNC:8823 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 Large_intestine +UBERON:0012399 large intestine smooth muscle longitudinal layer longitudinal muscle layer CL:1000414 endothelial cell of venule venule endothelium HGNC:1662, HGNC:1662, HGNC:1663, HGNC:1663, HGNC:8823, HGNC:8823 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 Large_intestine +UBERON:0005742 adventitia adventitia CL:1000414 endothelial cell of venule venule endothelium HGNC:1662, HGNC:1662, HGNC:1663, HGNC:1663, HGNC:8823, HGNC:8823 NoDOI Large_intestine +UBERON:0004927 submucosa of cecum submucosa CL:1000414 endothelial cell of venule venule endothelium HGNC:1662, HGNC:1662, HGNC:1663, HGNC:1663, HGNC:8823, HGNC:8823 NoDOI Large_intestine +UBERON:0002439 myenteric nerve plexus myenteric plexus of Auerbach CL:1000414 endothelial cell of venule venule endothelium HGNC:1662, HGNC:1662, HGNC:1663, HGNC:1663, HGNC:8823, HGNC:8823 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 Large_intestine +UBERON:0008974 apocrine gland apocrine gland CL:1000417 myoepithelial cell of sweat gland myoepithelial HGNC:130, HGNC:130 NoDOI multi_loc +UBERON:0000423 eccrine sweat gland Eccrine (sweat) glands CL:1000417 myoepithelial cell of sweat gland myoepithelial cell HGNC:10492, HGNC:30840, HGNC:6436 DOI:10.1111/exd.12773|DOI:10.1111/1523-1747.ep12277180|DOI:10.1046/j.1365-2133.1997.17651853.x|PMID:26014472|PMID:2414369|PMID:9274623 Skin +UBERON:0008974 apocrine gland Apocrine glands CL:1000417 myoepithelial cell of sweat gland myoepithelial cell HGNC:4172, HGNC:8993 |DOI:10.1083/jcb.95.2.580|DOI:10.1046/j.0022-202x.2001.00005.x|DOI:10.1097/DAD.0000000000000306|PMID:6183275|PMID:11764285|PMID:26595821 Skin +UBERON:0002067 dermis Dermis CL:1000417 myoepithelial cell of sweat gland myoepithelial cell HGNC:10492, HGNC:130, HGNC:2155 DOI:10.1247/csf.14009|DOI:10.1247/csf.14009|DOI:10.1097/DAD.0000000000000431|DOI:10.1046/j.1365-2133.1997.17651853.x|PMID:25196208|PMID:25196208|PMID:26630681||PMID:9274623 Skin +UBERON:0008974 apocrine gland apocrine gland CL:1000417 myoepithelial cell of sweat gland myoepithelial HGNC:130, HGNC:130 NoDOI Large_intestine +UBERON:0000423 eccrine sweat gland eccrine sweat gland CL:1000417 myoepithelial cell of sweat gland myoepithelial HGNC:130, HGNC:130 NoDOI Large_intestine +UBERON:0000423 eccrine sweat gland eccrine sweat gland CL:1000417 myoepithelial cell of sweat gland myoepithelial HGNC:130, HGNC:130 NoDOI multi_loc +UBERON:0000423 eccrine sweat gland Eccrine (sweat) glands CL:1000417 myoepithelial cell of sweat gland myoepithelial cell HGNC:10492, HGNC:30840, HGNC:6436 DOI:10.1111/exd.12773|DOI:10.1111/1523-1747.ep12277180|DOI:10.1046/j.1365-2133.1997.17651853.x|PMID:26014472|PMID:2414369|PMID:9274623 multi_loc +UBERON:0008974 apocrine gland Apocrine glands CL:1000417 myoepithelial cell of sweat gland myoepithelial cell HGNC:4172, HGNC:8993 |DOI:10.1083/jcb.95.2.580|DOI:10.1046/j.0022-202x.2001.00005.x|DOI:10.1097/DAD.0000000000000306|PMID:6183275|PMID:11764285|PMID:26595821 multi_loc +UBERON:0005750 glomerular parietal epithelium parietal epithelial layer CL:1000452 parietal epithelial cell Parietal Epithelial Cell HGNC:12663, HGNC:12692, HGNC:15472, HGNC:18688, HGNC:4883 DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|DOI:10.1038/s41467-019-10861-2|PMID:31249312|PMCID:PMC6597610 Kidney +UBERON:0001232 collecting duct of renal tubule Collecting Duct CL:1000454 kidney collecting duct epithelial cell Collecting Duct Cell HGNC:1748, HGNC:1748, HGNC:4172, HGNC:6446 DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|DOI:10.1681/ASN.2020010071|PMID:31249312|PMCID:PMC6597610|PMID:32358040 Kidney +UBERON:0003335 serosa of colon serosa CL:1000457 mesothelial cell of visceral peritoneum mesothelial cell HGNC:1435, HGNC:1435, HGNC:6430, HGNC:6430, HGNC:6446, HGNC:6446 NoDOI Large_intestine +UBERON:0002025 stratum basale of epidermis Stratum basale (SB) CL:1000458 melanocyte of skin Melanocyte HGNC:10492, HGNC:11190, HGNC:7124 DOI:10.1038/s41586-020-2785-8|DOI:10.1074/jbc.m309036200|DOI:10.1046/j.1365-2133.1997.17651853.x|DOI:10.1034/j.1600-0854.2002.30909.x|PMID:33029006|PMID:12944398|PMID:9274623|PMID:12191019 Skin +UBERON:0002351 sinoatrial node sinoatrial node CL:1000477 cardiac pacemaker cell of sinoatrial node pacemaker cell HGNC:16882, HGNC:4280 Heart +UBERON:0002353 atrioventricular bundle bundle of His CL:1000477 cardiac pacemaker cell of sinoatrial node pacemaker cardiomyocyte HGNC:16882, HGNC:4280 Heart +UBERON:0002352 atrioventricular node atrioventricular node CL:1000477 cardiac pacemaker cell of sinoatrial node pacemaker cell HGNC:16882, HGNC:4280 Heart +UBERON:0004184 prostate gland stroma prostate stroma CL:1000487 smooth muscle cell of prostate prostate smooth muscle HGNC:130, HGNC:145, HGNC:2770 doi:10.1002/path.5751 Prostate +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:1000489 reticular cell of splenic cord Fibroblastic Reticular Cell (FRC) HGNC:10617, HGNC:10617, HGNC:10620, HGNC:1118, HGNC:11784, HGNC:11801, HGNC:130, HGNC:1318, HGNC:1697, HGNC:2095, HGNC:2336, HGNC:2705, HGNC:3036, HGNC:3349, HGNC:3357, HGNC:6023, HGNC:6765, HGNC:7809 DOI:10.1111/imm.12469|NoDOI|DOI:10.1038/s41467-019-09728-3 Spleen +UBERON:0001266 splenic cord Splenic Cord CL:1000489 reticular cell of splenic cord Red Pulp Reticular Cell HGNC:10672, HGNC:2770, HGNC:5344, HGNC:6139, HGNC:6140, HGNC:6141, HGNC:6153, HGNC:8803, HGNC:8804 DOI:10.1111/imm.12469|DOI:10.1038/nri2588 Spleen +UBERON:0001251 Marginal Zone of Spleen Superficial Zone CL:1000489 reticular cell of splenic cord Fibroblastic Reticular Cell (FRC) HGNC:1037, HGNC:10620, HGNC:10639, HGNC:10639, HGNC:1118, HGNC:1318, HGNC:2545, HGNC:3357, HGNC:6765, HGNC:6765, HGNC:7036, HGNC:7098 DOI:10.1111/imm.12469|DOI:10.1038/s41467-019-09728-3 Spleen +UBERON:0002401 visceral pleura visceral pleura CL:1000493 mesothelial cell of visceral pleura mesothelial cell of visceral pleura HGNC:12796, HGNC:12796, HGNC:18259, HGNC:21444, HGNC:2198, HGNC:2705, HGNC:7035 Lung +UBERON:0009095 tip of renal papilla Papillary Tip CL:1000597 papillary tips cell Papillary Tip Epithelial Cell HGNC:11530, HGNC:15979, HGNC:4554, HGNC:6442 Kidney +UBERON:0005215 kidney interstitium Interstitium CL:1000691 kidney interstitial myofibroblast Myofibroblast HGNC:11553, HGNC:130, HGNC:20391, HGNC:2193, HGNC:2197, HGNC:2209 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41586-020-2941-1|PMID:31249312|PMCID:PMC6597610 Kidney +UBERON:0005215 kidney interstitium Interstitium CL:1000692 kidney interstitial fibroblast Fibroblast HGNC:12692, HGNC:1346, HGNC:14881, HGNC:2197, HGNC:2198, HGNC:2705, HGNC:6724 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|PMID:31249312|PMCID:PMC6597610 Kidney +UBERON:0005215 kidney interstitium Interstitium CL:1000695 kidney interstitial alternatively activated macrophage M2-Macrophage HGNC:1628, HGNC:1631, HGNC:4947, HGNC:6024, HGNC:6152, HGNC:7228 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41586-020-2941-1|DOI:10.1126/science.aat5031|PMID:31249312|PMCID:PMC6597610 Kidney +UBERON:0001253 lamina propria of ureter lamina propria of ureter CL:1000708 ureter adventitial cell smooth muscle HGNC:130, HGNC:1663, HGNC:895 Ureter +UBERON:0001253 lamina propria of ureter lamina propria of ureter CL:1000708 ureter adventitial cell smooth muscle HGNC:130, HGNC:281, HGNC:6934 Ureter +UBERON:0001253 lamina propria of ureter lamina propria of ureter CL:1000708 ureter adventitial cell endothelium HGNC:10718, HGNC:2047, HGNC:8823 Ureter +UBERON:0001253 lamina propria of ureter lamina propria of ureter CL:1000708 ureter adventitial cell fibroblast HGNC:11092, HGNC:20396, HGNC:613 Ureter +UBERON:0001253 lamina propria of ureter lamina propria of ureter CL:1000708 ureter adventitial cell smooth muscle HGNC:130, HGNC:1663, HGNC:895 multi_loc +UBERON:0001253 lamina propria of ureter lamina propria of ureter CL:1000708 ureter adventitial cell myofibroblast HGNC:11373, HGNC:5318, HGNC:7035 Ureter +UBERON:0001253 lamina propria of ureter lamina propria of ureter CL:1000708 ureter adventitial cell endothelium HGNC:10718, HGNC:2047, HGNC:8823 multi_loc +UBERON:0001253 lamina propria of ureter lamina propria of ureter CL:1000708 ureter adventitial cell fibroblast HGNC:11092, HGNC:20396, HGNC:613 multi_loc +UBERON:0001253 lamina propria of ureter lamina propria of ureter CL:1000708 ureter adventitial cell myofibroblast HGNC:11373, HGNC:5318, HGNC:7035 multi_loc +UBERON:0001253 lamina propria of ureter lamina propria of ureter CL:1000708 ureter adventitial cell smooth muscle HGNC:130, HGNC:281, HGNC:6934 multi_loc +UBERON:0004203 cortical collecting duct Collecting Duct (Cortex) CL:1000714 kidney cortex collecting duct principal cell Cortical Collecting Duct Principal Cell HGNC:10602, HGNC:4028, HGNC:4172, HGNC:634, HGNC:634, HGNC:636 DOI:10.1038/s41467-019-10861-2|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1172/jci.insight.133267|PMID:31249312|PMCID:PMC6597610|PMID:31689386 Kidney +UBERON:0004203 cortical collecting duct Collecting Duct (Cortex) CL:1000714 kidney cortex collecting duct principal cell Cortical Collecting Duct Principal Cell HGNC:634, HGNC:634, HGNC:636 Kidney +UBERON:0004203 cortical collecting duct Collecting Duct (Cortex) CL:1000714 kidney cortex collecting duct principal cell Cortical Collecting Duct Principal Cell HGNC:10602, HGNC:4028, HGNC:4172, HGNC:634, HGNC:634, HGNC:636 DOI:10.1038/s41467-019-10861-2|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1172/jci.insight.133267|PMID:31249312|PMCID:PMC6597610|PMID:31689386 multi_loc +UBERON:0004203 cortical collecting duct Collecting Duct (Cortex) CL:1000714 kidney cortex collecting duct principal cell Cortical Collecting Duct Principal Cell HGNC:634, HGNC:634, HGNC:636 multi_loc +UBERON:0004203 cortical collecting duct Collecting Duct (Cortex) CL:1000715 kidney cortex collecting duct intercalated cell Cortical Collecting Duct Intercalated Cell Type A HGNC:11027, HGNC:14467, HGNC:6342, HGNC:639 DOI:10.1038/s41467-019-10861-2|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|PMID:31249312|PMCID:PMC6597610|PMID:31689386 Kidney +UBERON:0004203 cortical collecting duct Collecting Duct CL:1000715 kidney cortex collecting duct intercalated cell Cortical Collecting Duct Intercalated Cell Type B HGNC:11035, HGNC:8818 DOI:10.1038/s41467-019-10861-2|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|DOI:10.1126/science.aat1699|PMID:31249312|PMCID:PMC6597610|PMID:31689386 Kidney +UBERON:0004203 cortical collecting duct Collecting Duct (Cortex) CL:1000715 kidney cortex collecting duct intercalated cell Cortical Collecting Duct Intercalated Cell Type A HGNC:11027, HGNC:14467, HGNC:6342, HGNC:639 DOI:10.1038/s41467-019-10861-2|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|PMID:31249312|PMCID:PMC6597610|PMID:31689386 multi_loc +UBERON:0004203 cortical collecting duct Collecting Duct CL:1000715 kidney cortex collecting duct intercalated cell Cortical Collecting Duct Intercalated Cell Type B HGNC:11035, HGNC:8818 DOI:10.1038/s41467-019-10861-2|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|DOI:10.1126/science.aat1699|PMID:31249312|PMCID:PMC6597610|PMID:31689386 multi_loc +UBERON:0004204 outer medullary collecting duct Collecting Duct (Outer Medulla) CL:1000716 kidney outer medulla collecting duct principal cell Outer Medullary Collecting Duct Principal Cell HGNC:10602, HGNC:4028, HGNC:4172, HGNC:634, HGNC:634, HGNC:636 DOI:10.1038/s41467-019-10861-2|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1172/jci.insight.133267|PMID:31249312|PMCID:PMC6597610|PMID:31689386 Kidney +UBERON:0004204 renal outer medullary collecting duct Collecting Duct (Medulla) CL:1000717 kidney outer medulla collecting duct intercalated cell Outer Medullary Collecting Duct Intercalated Cell Type A HGNC:11027, HGNC:1437, HGNC:14467, HGNC:6342 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1126/science.aat1699|PMID:31249312|PMCID:PMC6597610 Kidney +UBERON:0004205 inner medullary collecting duct Collecting Duct (Inner Medulla) CL:1000718 kidney inner medulla collecting duct Inner Medullary Collecting Duct Cell HGNC:10919, HGNC:634, HGNC:634 DOI:10.1038/s41467-019-10861-2|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1101/2021.07.28.454201|DOI:10.1681/ASN.2020010071|PMID:31249312|PMCID:PMC6597610|PMID:31689386 Kidney +UBERON:0009095 tip of renal papilla papillary tip CL:1000718 kidney inner medulla collecting duct principal cell Inner Medullary Collecting Duct Cell HGNC:10919, HGNC:634, HGNC:634 Kidney +UBERON:0002320 glomerular mesangium glomerular mesangium CL:1000742 glomerular mesangial cell Mesangial Cell HGNC:10249, HGNC:16953, HGNC:17732, HGNC:26270, HGNC:6144, HGNC:8804 DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41586-020-2941-1|DOI:10.1073/pnas.2005477117|DOI:10.1681/ASN.2020010071|PMID:31249312|PMCID:PMC6597610 Kidney +UBERON:0005097 renal connecting tubule Connecting Tubule CL:1000768 kidney connecting tubule epithelial cell Connecting Tubule Cell HGNC:10588, HGNC:10602, HGNC:11068, HGNC:1434, HGNC:1748, HGNC:1748, HGNC:3145, HGNC:4172, HGNC:5209 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1681/ASN.2020010071|DOI:10.1681/ASN.2020010071|PMID:31249312|PMCID:PMC6597610|PMID:32358040 Kidney +UBERON:0001292 distal convoluted tubule Distal Convolution CL:1000849 kidney distal convoluted tubule epithelial cell Distal Convoluted Tubule Cell HGNC:10527, HGNC:10912, HGNC:1434, HGNC:1748, HGNC:1748, HGNC:17995, HGNC:799, HGNC:799 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1681/ASN.2020010071|DOI:10.1681/ASN.2020010071|PMID:31249312|PMCID:PMC6597610|PMID:32358040 Kidney +UBERON:0002335 macula densa Macula Densa CL:1000850 macula densa epithelial cell Macula Densa cell HGNC:10250, HGNC:10910, HGNC:1748, HGNC:1748, HGNC:7872, HGNC:799, HGNC:799 DOI:10.1038/s41467-019-10861-2|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1681/ASN.2020010071|PMID:31249312|PMCID:PMC6597610|PMID:31689386 Kidney +UBERON:0004294 glomerular capillary endothelium glomerular capillary endothelium CL:1001005 glomerular capillary endothelial cell Glomerular Capillary Endothelial Cell HGNC:16041, HGNC:29853, HGNC:3244, HGNC:3763, HGNC:633, HGNC:633, HGNC:9051 DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41586-020-2941-1|DOI:10.1038/s41467-019-12872-5|PMID:31249312|PMCID:PMC6597610 Kidney +UBERON:0012441 endothelium of peritubular capillary Endothelium (non glomerular) CL:1001033 peritubular capillary endothelial cell Peritubular Capillary Endothelial Cell HGNC:13635, HGNC:2959, HGNC:8823, HGNC:9845 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267||DOI:10.1038/s41467-019-12872-5|PMID:31249312|PMCID:PMC6597610 Kidney +UBERON:0004639 renal afferent arteriole Afferent Arteriole CL:1001096 kidney afferent arteriole endothelial cell Afferent Arteriole Endothelial Cell HGNC:10918, HGNC:11853, HGNC:15846, HGNC:18122, HGNC:222, HGNC:8823, HGNC:8951 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|PMID:31249312|PMCID:PMC6597610 Kidney +UBERON:0004640 renal efferent arteriole Efferent Arteriole CL:1001099 kidney efferent arteriole endothelial cell Efferent Arteriole Endothelial cell HGNC:10918, HGNC:11853, HGNC:15846, HGNC:18122, HGNC:222, HGNC:8823, HGNC:8951 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|PMID:31249312|PMCID:PMC6597610 Kidney +UBERON:0001291 thick ascending limb of loop of Henle Loop of Henle (Thick Limb) CL:1001106 kidney loop of Henle thick ascending limb epithelial cell Thick Ascending Limb Cell HGNC:10910, HGNC:12559, HGNC:12559, HGNC:1514, HGNC:1748, HGNC:1748, HGNC:799, HGNC:799 DOI:10.1038/s41467-019-10861-2|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|DOI:10.1038/s41586-020-2941-1|DOI:10.1681/ASN.2020010071|PMID:31249312|PMCID:PMC6597610|PMID:31689386 Kidney +UBERON:0004193 loop of Henle ascending limb thin segment Loop of Henle (Thin Limb) CL:1001107 kidney loop of Henle thin ascending limb epithelial cell Ascending Thin Limb Cell HGNC:10832, HGNC:11530, HGNC:1748, HGNC:1748, HGNC:2026, HGNC:2045, HGNC:2389, HGNC:9459 DOI:10.1038/s41467-019-10861-2|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1038/s41467-019-10861-2|PMID:31249312|PMCID:PMC6597610|PMID:31689386 Kidney +UBERON:0001291 thick ascending limb of loop of Henle Loop of Henle (Thick Limb/Medulla) CL:1001108 kidney loop of Henle medullary thick ascending limb epithelial cell Medullary Thick Ascending Limb Cell HGNC:10910, HGNC:12559, HGNC:1514 multi_loc +UBERON:0001291 thick ascending limb of loop of Henle Loop of Henle (Thick Limb/Medulla) CL:1001108 kidney loop of Henle medullary thick ascending limb epithelial cell Medullary Thick Ascending Limb Cell HGNC:10910, HGNC:12559, HGNC:12559, HGNC:1514, HGNC:1748, HGNC:1748, HGNC:799, HGNC:799, HGNC:9459, HGNC:9858 DOI:10.1038/s41467-019-10861-2|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|DOI:10.1681/ASN.2020010071|PMID:31249312|PMCID:PMC6597610|PMID:31689386 Kidney +UBERON:0001291 thick ascending limb of loop of Henle Loop of Henle (Thick Limb/Medulla) CL:1001108 kidney loop of Henle medullary thick ascending limb epithelial cell Medullary Thick Ascending Limb Cell HGNC:10910, HGNC:12559, HGNC:1514 Kidney +UBERON:0001291 thick ascending limb of loop of Henle Loop of Henle (Thick Limb/Medulla) CL:1001108 kidney loop of Henle medullary thick ascending limb epithelial cell Medullary Thick Ascending Limb Cell HGNC:10910, HGNC:12559, HGNC:12559, HGNC:1514, HGNC:1748, HGNC:1748, HGNC:799, HGNC:799, HGNC:9459, HGNC:9858 DOI:10.1038/s41467-019-10861-2|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|DOI:10.1681/ASN.2020010071|PMID:31249312|PMCID:PMC6597610|PMID:31689386 multi_loc +UBERON:0001291 thick ascending limb of loop of Henle Loop of Henle (Thick Limb/Cortex) CL:1001109 kidney loop of Henle cortical thick ascending limb epithelial cell Cortical Thick Ascending Limb Cell HGNC:10910, HGNC:12559, HGNC:12559, HGNC:1514, HGNC:1748, HGNC:1748, HGNC:2037, HGNC:33705, HGNC:799, HGNC:799 DOI:10.1038/s41467-019-10861-2|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1038/s41467-019-10861-2|DOI:10.1681/ASN.2020010071|PMID:31249312|PMCID:PMC6597610|PMID:31689386 Kidney +UBERON:0005096 descending thin limb descending thin limb of loop of Henle CL:1001111 kidney loop of Henle thin descending limb epithelial cell Descending Thin Limb Cell HGNC:11255, HGNC:11255, HGNC:12663, HGNC:12692, HGNC:1748, HGNC:1748, HGNC:21637, HGNC:2389 DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|DOI:10.1038/s41467-019-10861-2|DOI:10.1681/ASN.2020010071|PMID:31249312|PMCID:PMC6597610 Kidney +UBERON:0001986 endothelium Endothelium (non glomerular) CL:1001131 vasa recta ascending limb cell Ascending Vasa Recta Endothelial Cell HGNC:13635, HGNC:2959, HGNC:4460, HGNC:7976, HGNC:8823 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1101/2021.07.28.454201|DOI:10.1038/s41586-020-2941-1|DOI:10.1038/s41467-019-12872-5|PMID:31249312|PMCID:PMC6597610 Kidney +UBERON:0009202 vasa recta descending limb Descending Vasa Recta CL:1001285 vasa recta descending limb cell Descending Vasa Recta Endothelial Cell HGNC:11853, HGNC:15846, HGNC:222, HGNC:8951 multi_loc +UBERON:0009202 vasa recta descending limb Descending Vasa Recta CL:1001285 vasa recta descending limb cell Descending Vasa Recta Endothelial Cell HGNC:11853, HGNC:15846, HGNC:222, HGNC:8951 Kidney +UBERON:0009202 vasa recta descending limb Descending Vasa Recta CL:1001285 vasa recta descending limb cell Descending Vasa Recta Endothelial Cell HGNC:11853, HGNC:12559, HGNC:15846, HGNC:222, HGNC:8951 Kidney +UBERON:0001986 endothelium Endothelium (non glomerular) CL:1001285 vasa recta descending limb cell Descending Vasa Recta Endothelial Cell HGNC:10918, HGNC:11853, HGNC:15846, HGNC:222, HGNC:26183, HGNC:8823, HGNC:8951 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1101/2021.07.28.454201|DOI:10.1038/s41467-019-12872-5|PMID:31249312|PMCID:PMC6597610 Kidney +UBERON:0009202 vasa recta descending limb Descending Vasa Recta CL:1001285 vasa recta descending limb cell Descending Vasa Recta Endothelial Cell HGNC:11853, HGNC:12559, HGNC:15846, HGNC:222, HGNC:8951 multi_loc +UBERON:0003517 kidney blood vessel Kidney Blood Vessel CL:1001318 renal interstitial pericyte Vascular Smooth Muscle Cell/Pericyte (general) HGNC:11553, HGNC:130, HGNC:234, HGNC:26295, HGNC:6934, HGNC:7569, HGNC:8033 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|DOI:10.1073/pnas.2005477117|DOI:10.1038/s41586-020-2941-1|PMID:31249312|PMCID:PMC6597610 Kidney +UBERON:0001261 lamina propria of urinary bladder lamina propria of urinary bladder CL:1001319 bladder cell myofibroblast HGNC:11373, HGNC:5318, HGNC:7035 multi_loc +UBERON:0001261 lamina propria of urinary bladder lamina propria of urinary bladder CL:1001319 bladder cell fibroblast HGNC:21245, HGNC:2705, HGNC:29673 multi_loc +UBERON:0001261 lamina propria of urinary bladder lamina propria of urinary bladder CL:1001319 bladder cell fibroblast HGNC:1346, HGNC:2705, HGNC:3011 multi_loc +UBERON:0001261 lamina propria of urinary bladder lamina propria of urinary bladder CL:1001319 bladder cell fibroblast HGNC:11092, HGNC:20396, HGNC:613 multi_loc +UBERON:0001261 lamina propria of urinary bladder lamina propria of urinary bladder CL:1001319 bladder cell fibroblast HGNC:11092, HGNC:20396, HGNC:613 Urinary_bladder +UBERON:0001261 lamina propria of urinary bladder lamina propria of urinary bladder CL:1001319 bladder cell fibroblast HGNC:1346, HGNC:2705, HGNC:3011 Urinary_bladder +UBERON:0001261 lamina propria of urinary bladder lamina propria of urinary bladder CL:1001319 bladder cell fibroblast HGNC:21245, HGNC:2705, HGNC:29673 Urinary_bladder +UBERON:0001261 lamina propria of urinary bladder lamina propria of urinary bladder CL:1001319 bladder cell myofibroblast HGNC:11373, HGNC:5318, HGNC:7035 Urinary_bladder +UBERON:0001254 urothelium of ureter urothelium of ureter CL:1001428 ureter urothelial cell urothelium HGNC:10492, HGNC:2891, HGNC:6442 multi_loc +UBERON:0001254 urothelium of ureter urothelium of ureter CL:1001428 ureter urothelial cell urothelium HGNC:12577, HGNC:12578, HGNC:12580 multi_loc +UBERON:0001254 urothelium of ureter urothelium of ureter CL:1001428 ureter urothelial cell urothelium HGNC:15979, HGNC:384, HGNC:6415 multi_loc +UBERON:0001254 urothelium of ureter urothelium of ureter CL:1001428 ureter urothelial cell urothelium HGNC:12577, HGNC:12578, HGNC:12580 Ureter +UBERON:0004645 urinary bladder urothelium urinary bladder urothelium CL:1001428 bladder urothelial cell urothelium HGNC:12578, HGNC:12580, HGNC:40603 multi_loc +UBERON:0004645 urinary bladder urothelium urinary bladder urothelium CL:1001428 bladder urothelial cell urothelium HGNC:15979, HGNC:384, HGNC:6415 multi_loc +UBERON:0004645 urinary bladder urothelium urinary bladder urothelium CL:1001428 bladder urothelial cell urothelium HGNC:10492, HGNC:2891, HGNC:6442 multi_loc +UBERON:0001254 urothelium of ureter urothelium of ureter CL:1001428 ureter urothelial cell urothelium HGNC:15979, HGNC:384, HGNC:6415 Ureter +UBERON:0001254 urothelium of ureter urothelium of ureter CL:1001428 ureter urothelial cell urothelium HGNC:10492, HGNC:2891, HGNC:6442 Ureter +UBERON:0004645 urinary bladder urothelium urinary bladder urothelium CL:1001428 bladder urothelial cell urothelium HGNC:12578, HGNC:12580, HGNC:40603 Urinary_bladder +UBERON:0004645 urinary bladder urothelium urinary bladder urothelium CL:1001428 bladder urothelial cell urothelium HGNC:10492, HGNC:2891, HGNC:6442 Urinary_bladder +UBERON:0004645 urinary bladder urothelium urinary bladder urothelium CL:1001428 bladder urothelial cell urothelium HGNC:15979, HGNC:384, HGNC:6415 Urinary_bladder +UBERON:0001232 collecting duct of renal tubule Collecting Duct CL:1001431 kidney collecting duct principal cell Collecting Duct Principal Cell HGNC:10602, HGNC:4028, HGNC:4172, HGNC:634, HGNC:634, HGNC:636 DOI:10.1038/s41467-019-10861-2|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1172/jci.insight.133267|DOI:10.1038/s41586-020-2941-1|PMID:31249312|PMCID:PMC6597610|PMID:31689386 Kidney +UBERON:0001232 collecting duct of renal tubule Collecting Duct CL:1001432 kidney collecting duct intercalated cell Collecting Duct Intercalated Cell HGNC:1373, HGNC:18266 DOI:10.1038/s41467-019-10861-2|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1172/jci.insight.133267|DOI:10.1038/s41586-020-2941-1|PMID:31249312|PMCID:PMC6597610|PMID:31689386 Kidney +UBERON:0004913 hepatopancreatic ampulla Hepatopancreatic ampulla CL:1001433 epithelial cell of exocrine pancreas Ductal epithelial cell HGNC:6436 Pancreas +UBERON:0014726 intercalated duct of pancreas Intercalated duct CL:1001433 epithelial cell of exocrine pancreas Ductal epithelial cell HGNC:6436 Pancreas +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:11353, HGNC:3020, HGNC:49260 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002743 basal forebrain basal forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:26299, HGNC:3020, HGNC:52997 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002743 basal forebrain basal forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:52997, HGNC:54353 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:3020 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:43643, HGNC:8831 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:26299, HGNC:8831 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:32696, HGNC:8831 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:3024, HGNC:7154 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:10669, HGNC:1409, HGNC:14632, HGNC:7000, HGNC:9609 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:1001474 medium spiny neuron medium spiny neuron HGNC:4086, HGNC:6132 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:3020, HGNC:9679 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:26299, HGNC:8831 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:26002, HGNC:52997, HGNC:6483 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002743 basal forebrain basal forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:8831 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:45056, HGNC:4525, HGNC:8139 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:23729, HGNC:6132, HGNC:8569 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:11843, HGNC:15813, HGNC:19718, HGNC:26683, HGNC:37203, HGNC:4525 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:3023 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002743 basal forebrain basal forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:11517, HGNC:4243, HGNC:8831 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:11517, HGNC:16709, HGNC:4243 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:19718, HGNC:219, HGNC:3520, HGNC:5184 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:10669, HGNC:7000 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:10640, HGNC:19718, HGNC:3520, HGNC:9679 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:10725, HGNC:14632, HGNC:4525, HGNC:7000 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:1954, HGNC:19718, HGNC:29 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002743 basal forebrain basal forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:3023, HGNC:50645, HGNC:7154 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:16018, HGNC:38408, HGNC:8656 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:4525, HGNC:8620, HGNC:9446 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:4086, HGNC:8831 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:11526, HGNC:13875, HGNC:19718, HGNC:427 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:1001474 medium spiny neuron medium spiny neuron HGNC:3023, HGNC:3520, HGNC:8831 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:1001474 medium spiny neuron medium spiny neuron HGNC:10640, HGNC:13875, HGNC:6132 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:1954, HGNC:19718, HGNC:29 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002600 limbic lobe limbic lobe CL:1001474 medium spiny neuron medium spiny neuron HGNC:3126, HGNC:4319 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:3024, HGNC:7154 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:10669, HGNC:1409, HGNC:14632, HGNC:7000, HGNC:9609 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:23729, HGNC:6132, HGNC:8569 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:19718, HGNC:219, HGNC:3520, HGNC:5184 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:10669, HGNC:7000 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:1001474 medium spiny neuron medium spiny neuron HGNC:4086, HGNC:6132 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:4086, HGNC:8831 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:4525, HGNC:8620, HGNC:9446 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:16018, HGNC:38408, HGNC:8656 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002743 basal forebrain basal forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:26299, HGNC:3020, HGNC:52997 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:11843, HGNC:15813, HGNC:19718, HGNC:26683, HGNC:37203, HGNC:4525 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:10725, HGNC:14632, HGNC:4525, HGNC:7000 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:45056, HGNC:4525, HGNC:8139 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:10640, HGNC:19718, HGNC:3520, HGNC:9679 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:32696, HGNC:8831 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:11526, HGNC:13875, HGNC:19718, HGNC:427 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:11517, HGNC:16709, HGNC:4243 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002743 basal forebrain basal forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:11517, HGNC:4243, HGNC:8831 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:3023 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002743 basal forebrain basal forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:52997, HGNC:54353 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:1001474 medium spiny neuron medium spiny neuron HGNC:10640, HGNC:13875, HGNC:6132 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:3020, HGNC:9679 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002743 basal forebrain basal forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:3023, HGNC:50645, HGNC:7154 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:43643, HGNC:8831 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:11353, HGNC:3020, HGNC:49260 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:3020 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:1001474 medium spiny neuron medium spiny neuron HGNC:3023, HGNC:3520, HGNC:8831 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:26002, HGNC:52997, HGNC:6483 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002743 basal forebrain basal forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:8831 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0004848 respiratory system arterial endothelium respiratory system arterial endothelium CL:1001568 pulmonary artery endothelial cell pulmonary artery endothelial cell HGNC:19832, HGNC:2047, HGNC:35454, HGNC:7884 Lung +UBERON:0009980 condyle of femur Distal Femur CL:1001607 articular chondrocyte articular chondrocyte HGNC:2200, HGNC:2201 Knee +UBERON:0012239 urinary bladder vasculature urinary bladder vasculature CL:2000040 bladder microvascular endothelial cell endothelium HGNC:10718, HGNC:2047, HGNC:8823 Urinary_bladder +UBERON:0010400 Spleen Trabecular Vein Spleen Trabecular Vein CL:2000053 splenic endothelial cell Splenic endothelial cell HGNC:11784, HGNC:12726, HGNC:1662, HGNC:1662, HGNC:8823 DOI:10.1007/s00418-007-0320-8|DOI10.1182/bloodadvances.2017015073 Spleen +UBERON:0001959 white pulp of spleen White Pulp CL:2000053 splenic endothelial cell Splenic endothelial cell HGNC:12726, HGNC:1662, HGNC:1662, HGNC:8823, HGNC:8823 DOI:10.1111/imm.12469|DOI:10.1016/j.aanat.2019.05.004|DOI10.1182/bloodadvances.2017015073 Spleen +UBERON:0001250 red pulp of spleen Red Pulp CL:2000053 splenic endothelial cell Splenic endothelial cell HGNC:11784, HGNC:12726, HGNC:1662, HGNC:1662, HGNC:1706, HGNC:8823, HGNC:8823 DOI:10.1007/s00418-007-0320-8|DOI:10.1016/j.aanat.2019.05.004|DOI10.1182/bloodadvances.2017015073 Spleen +UBERON:0001250 red pulp of spleen Red Pulp CL:2000053 splenic endothelial cell Splenic endothelial cell HGNC:12663, HGNC:12726, HGNC:12726, HGNC:1662, HGNC:1662, HGNC:8823, HGNC:8823 DOI:10.1017/CBO9780511545979|DOI10.1182/bloodadvances.2017015073 Spleen +UBERON:0001250 red pulp of spleen Red Pulp CL:2000053 splenic endothelial cell Splenic endothelial cell HGNC:11784, HGNC:12726, HGNC:1662, HGNC:1662, HGNC:8823 DOI:10.1007/s00418-007-0320-8|DOI10.1182/bloodadvances.2017015073 Spleen +UBERON:0013132 Penicillar Arteriole Penicillar Arteriole CL:2000053 splenic endothelial cell Splenic endothelial cell HGNC:11784, HGNC:12726, HGNC:1662, HGNC:1662, HGNC:8823, HGNC:8823 DOI:10.1111/imm.12469|DOI:10.1111/j.1365-2559.1986.tb02482.x|DOI:10.1111/j.1365-2559.1985.tb02841.x|DOI10.1182/bloodadvances.2017015073 Spleen +UBERON:0010399 Spleen Trabecular Artery Spleen Trabecular Artery CL:2000053 splenic endothelial cell Splenic endothelial cell HGNC:11784, HGNC:12726, HGNC:1662, HGNC:1662, HGNC:8823 DOI:10.1007/s00418-007-0320-8|DOI:10.1016/j.aanat.2019.05.004|DOI10.1182/bloodadvances.2017015073 Spleen +UBERON:0010401 spleen central arteriole Periarteriolar Lymphoid Sheath (PALS) CL:2000053 splenic endothelial cell Splenic endothelial cell HGNC:11784, HGNC:12726, HGNC:1662, HGNC:1662, HGNC:8823, HGNC:8823 DOI:10.1007/s00418-007-0320-8|DOI:10.1111/j.1365-2559.1986.tb02482.x|DOI:10.1111/j.1365-2559.1985.tb02841.x|DOI10.1182/bloodadvances.2017015073 Spleen +UBERON:0001251 Marginal Zone of Spleen Superficial Zone CL:2000053 splenic endothelial cell Splenic endothelial cell HGNC:12726, HGNC:1662, HGNC:1662, HGNC:8823, HGNC:8823 DOI:10.1111/imm.12469|DOI:10.1016/j.aanat.2019.05.004|DOI10.1182/bloodadvances.2017015073 Spleen +UBERON:0001194 Splenic Artery Splenic Artery CL:2000053 splenic endothelial cell Splenic endothelial cell HGNC:11784, HGNC:12726, HGNC:1662, HGNC:1662, HGNC:8823, HGNC:8823 DOI:10.1111/imm.12469|DOI:10.1111/j.1365-2559.1986.tb02482.x|DOI:10.1111/j.1365-2559.1985.tb02841.x|DOI10.1182/bloodadvances.2017015073 Spleen +UBERON:0003713 splenic vein Splenic Vein CL:2000053 splenic endothelial cell Splenic endothelial cell HGNC:11784, HGNC:12726, HGNC:1662, HGNC:1662, HGNC:8823, HGNC:8823 DOI:10.1007/s00418-007-0320-8|DOI10.1182/bloodadvances.2017015073 Spleen +UBERON:0001250 red pulp of spleen Red Pulp CL:2000053 splenic endothelial cell Splenic endothelial cell HGNC:11784, HGNC:12726, HGNC:1662, HGNC:1662, HGNC:1706, HGNC:8823, HGNC:8823 DOI:10.1007/s00418-007-0320-8|DOI:10.1016/j.aanat.2019.05.004|DOI10.1182/bloodadvances.2017015073 multi_loc +UBERON:0001250 red pulp of spleen Red Pulp CL:2000053 splenic endothelial cell Splenic endothelial cell HGNC:12663, HGNC:12726, HGNC:12726, HGNC:1662, HGNC:1662, HGNC:8823, HGNC:8823 DOI:10.1017/CBO9780511545979|DOI10.1182/bloodadvances.2017015073 multi_loc +UBERON:0001250 red pulp of spleen Red Pulp CL:2000053 splenic endothelial cell Splenic endothelial cell HGNC:11784, HGNC:12726, HGNC:1662, HGNC:1662, HGNC:8823 DOI:10.1007/s00418-007-0320-8|DOI10.1182/bloodadvances.2017015073 multi_loc +UBERON:0004647 liver lobule hepatic Lobule CL:2000054 hepatic Pit cell Pit cell HGNC:11599, HGNC:3372, HGNC:6134 Liver +UBERON:0004184 prostate gland stroma prostate stroma CL:2000059 prostate gland microvascular endothelial cell endothelia HGNC:10718, HGNC:2047, HGNC:8823 doi:10.1002/path.5751 Prostate +UBERON:0003262 amniotic mesoderm amniotic mesoderm CL:2000061 placental amniotic mesenchymal stromal cell amnion mesenchymal stromal cell (AMSC) HGNC:11801, HGNC:1681, HGNC:3349, HGNC:8021 doi:10.3390/cells1041061|doi:10.1016/j.jcyt.2017.03.001|doi:10.1186/s13287-017-0757-1|DOI:10.1095/biolreprod51.4.739|DOI:10.1095/biolreprod.108.075226|doi.org/10.1182/blood.V74.2.751.751|doi:10.3390/cells1041061|doi:10.5966/sctm.2015-0022|doi:10.3346/jkms.2012.27.8.857|doi:10.1016/j.jcyt.2017.03.001|doi:10.1186/s13287-017-0757-1|DOI:10.1093/humrep/den051|DOI:10.1095/biolreprod.108.075226|doi:10.3390/cells1041061|doi:10.5966/sctm.2015-0022|doi:10.3346/jkms.2012.27.8.857|doi:10.1016/j.jcyt.2017.03.001|doi:10.1186/s13287-017-0757-1|DOI:10.1095/biolreprod.108.075226|doi:10.3390/cells1041061|doi:10.5966/sctm.2015-0022|doi:10.3346/jkms.2012.27.8.857|doi:10.1016/j.jcyt.2017.03.001|doi:10.1186/s13287-017-0757-1 Placenta +UBERON:0007106 chorionic villus chorionic villous CL:2000062 placental villus capillary endothelial cell placental microvascular endothelial cells HGNC:10477, HGNC:12726, HGNC:3468, HGNC:6934, HGNC:9864 PMID:8804361|doi:10.1155/2021/6662201|doi:10.1093/humrep/dem265|doi:10.1290/1071-2690(2001)037<0408:IOECFH>2.0.CO;2|DOI:10.1093/oxfordjournals.humrep.a136040|doi.org/10.1016/j.ajog.2009.01.025|PMID:8804361 Placenta +UBERON:0002049 vasculature vasculature CL:2000066 cardiac ventricle fibroblast fibroblast HGNC:4620, HGNC:8803 Heart +UBERON:0006567 right ventricle myocardium myocardium CL:2000066 cardiac ventricle fibroblast fibroblast HGNC:2705, HGNC:4620, HGNC:8803 Heart +UBERON:0006566 left ventricle myocardium myocardium CL:2000066 cardiac ventricle fibroblast fibroblast HGNC:2705, HGNC:4620, HGNC:8803 Heart +UBERON:0002049 vasculature vasculature CL:2000067 cardiac atrium fibroblast fibroblast HGNC:2705, HGNC:4620, HGNC:8803 Heart +UBERON:0003379 cardiac muscle of right atrium 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glutamatergic cortical neuron HGNC:22989 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:28543, HGNC:50538, HGNC:53225 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:43559, HGNC:53225 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:2210, HGNC:52895, HGNC:6482 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:2210, HGNC:53212 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:30620, HGNC:53175, HGNC:53225 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:23392 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:10259, HGNC:12335, HGNC:17109, HGNC:21694 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:53225 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:41926, HGNC:53212 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:53175 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:12695 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:10259, HGNC:12335, HGNC:17109, HGNC:21694 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cerebral cortex cerebral cortex CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:28543, HGNC:50538, HGNC:53225 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:30620, HGNC:53175, HGNC:53225 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:30620, HGNC:43558, HGNC:51166 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:22989 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral 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cortex CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:21569, HGNC:29109, HGNC:42500 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:14217, HGNC:9035 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:27683, HGNC:53108 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023008 intratelencephalic-projecting glutamatergic cortical neuron intratelencephalic-projecting glutamatergic cortical neuron HGNC:10259, HGNC:27405 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray 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extratelencephalic-projecting glutamatergic cortical neuron extratelencephalic-projecting glutamatergic cortical neuron HGNC:41926 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:4023009 extratelencephalic-projecting glutamatergic cortical neuron extratelencephalic-projecting glutamatergic cortical neuron HGNC:41926 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023009 extratelencephalic-projecting glutamatergic cortical neuron extratelencephalic-projecting glutamatergic cortical neuron HGNC:48639, HGNC:53354 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023012 near-projecting glutamatergic cortical neuron near-projecting glutamatergic cortical neuron HGNC:2217, HGNC:23631, HGNC:31401 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:4023012 near-projecting glutamatergic cortical neuron near-projecting 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near-projecting glutamatergic cortical neuron near-projecting glutamatergic cortical neuron HGNC:10256, HGNC:43910, HGNC:8076 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:4023012 near-projecting glutamatergic cortical neuron near-projecting glutamatergic cortical neuron HGNC:13433, HGNC:24665 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023012 near-projecting glutamatergic cortical neuron near-projecting glutamatergic cortical neuron HGNC:16067, HGNC:22128, HGNC:3969 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:4023012 near-projecting glutamatergic cortical neuron near-projecting glutamatergic cortical neuron HGNC:1663, HGNC:23631, HGNC:43910 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023012 near-projecting glutamatergic cortical neuron near-projecting glutamatergic cortical neuron HGNC:1663, HGNC:23631, HGNC:43910 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:4023012 near-projecting glutamatergic cortical neuron near-projecting glutamatergic cortical neuron HGNC:277, HGNC:43910, HGNC:9229, HGNC:9682 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023012 near-projecting glutamatergic cortical neuron near-projecting glutamatergic cortical neuron HGNC:11528, HGNC:26534, HGNC:41081 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023012 near-projecting glutamatergic cortical neuron near-projecting glutamatergic cortical neuron HGNC:5009, HGNC:52844 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:4023012 near-projecting glutamatergic cortical neuron near-projecting glutamatergic cortical neuron HGNC:277, HGNC:43910, HGNC:9229, HGNC:9682 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023012 near-projecting glutamatergic cortical neuron near-projecting glutamatergic cortical neuron HGNC:2217, HGNC:23631, HGNC:31401 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023012 near-projecting glutamatergic cortical neuron near-projecting glutamatergic cortical neuron HGNC:22128 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023012 near-projecting glutamatergic cortical neuron near-projecting glutamatergic cortical neuron HGNC:43910 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023012 near-projecting glutamatergic cortical neuron near-projecting glutamatergic cortical neuron HGNC:16379, HGNC:24665 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023012 near-projecting glutamatergic cortical neuron near-projecting glutamatergic cortical neuron HGNC:11528, HGNC:26534, HGNC:41081 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023012 near-projecting glutamatergic cortical neuron near-projecting glutamatergic cortical neuron HGNC:3969 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023012 near-projecting glutamatergic cortical neuron near-projecting glutamatergic cortical neuron HGNC:10256, HGNC:43910, HGNC:8076 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023012 near-projecting glutamatergic cortical neuron near-projecting glutamatergic cortical neuron HGNC:13433, HGNC:24665 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023012 near-projecting glutamatergic cortical neuron near-projecting glutamatergic cortical neuron HGNC:16067, HGNC:22128, HGNC:3969 DOI:10.1101/2022.10.12.511898 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HGNC:16941, HGNC:20693, HGNC:2464, HGNC:53587 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002037 cerebellum cerebellum CL:4023057 cerebellar inhibitory GABAergic interneuron cerebellar inhibitory HGNC:16941, HGNC:33609, HGNC:9674 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:4023057 cerebellar inhibitory GABAergic interneuron cerebellar inhibitory HGNC:1077, HGNC:11743, HGNC:53587, HGNC:8029 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002037 cerebellum cerebellum CL:4023057 cerebellar inhibitory GABAergic interneuron cerebellar inhibitory HGNC:16941 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:4023057 cerebellar inhibitory GABAergic interneuron cerebellar inhibitory HGNC:24330 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002037 cerebellum cerebellum CL:4023057 cerebellar inhibitory GABAergic interneuron cerebellar inhibitory HGNC:28751 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brain brain CL:4023059 differentiation-committed oligodendrocyte precursor committed oligodendrocyte precursor cell HGNC:14344, HGNC:3791 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:27823, HGNC:8038 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:20821, HGNC:2210 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:16953 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:27823 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:13542, HGNC:2654, HGNC:50507 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+UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:21184, HGNC:2210, HGNC:50507 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:14638, HGNC:49076 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:21184, HGNC:2210, HGNC:50507 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:20303, HGNC:2210 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:11963 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:6140 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:14454, HGNC:6140 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:8038 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:13542, HGNC:2654, HGNC:50507 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:20821, HGNC:29426, HGNC:50507, HGNC:52895 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:50507 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:11963 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023061 hippocampal CA4 neuron hippocampal CA4 neuron HGNC:18695, HGNC:8038 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023061 hippocampal CA4 neuron hippocampal CA4 neuron HGNC:13542, HGNC:1514, HGNC:6140 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023061 hippocampal CA4 neuron hippocampal CA4 neuron HGNC:10327, HGNC:24961 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023061 hippocampal CA4 neuron hippocampal CA4 neuron HGNC:14866, HGNC:2210, HGNC:27405, HGNC:6140 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023061 hippocampal CA4 neuron hippocampal CA4 neuron HGNC:25396, HGNC:4893 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023061 hippocampal CA4 neuron hippocampal CA4 neuron HGNC:53062 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023061 hippocampal CA4 neuron hippocampal CA4 neuron HGNC:53062, HGNC:6140 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023061 hippocampal CA4 neuron hippocampal CA4 neuron HGNC:53062 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002600 limbic lobe limbic lobe CL:4023061 hippocampal CA4 neuron hippocampal CA4 neuron HGNC:14866, HGNC:16941, HGNC:25588, HGNC:45056 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023061 hippocampal CA4 neuron hippocampal CA4 neuron HGNC:53062, HGNC:6140 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002600 limbic lobe limbic lobe CL:4023061 hippocampal CA4 neuron hippocampal CA4 neuron HGNC:14866, HGNC:2210, HGNC:27405, HGNC:6140 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002600 limbic lobe limbic lobe CL:4023061 hippocampal CA4 neuron hippocampal CA4 neuron HGNC:10327, HGNC:24961 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002600 limbic lobe limbic lobe CL:4023061 hippocampal CA4 neuron hippocampal 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excitatory neuron thalamic excitatory neuron HGNC:13826, HGNC:49796 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023068 thalamic excitatory neuron thalamic excitatory neuron HGNC:18374, HGNC:6173, HGNC:9704 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023068 thalamic excitatory neuron thalamic excitatory neuron HGNC:3969, HGNC:49471 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023068 thalamic excitatory neuron thalamic excitatory neuron HGNC:11773, HGNC:18864, HGNC:23317, HGNC:52483 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023068 thalamic excitatory neuron thalamic excitatory neuron HGNC:50526, HGNC:8038, HGNC:9997 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023068 thalamic excitatory neuron thalamic excitatory neuron HGNC:24323, HGNC:9163, HGNC:9997 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023068 thalamic excitatory neuron thalamic excitatory neuron HGNC:3490, HGNC:7679 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023068 thalamic excitatory neuron thalamic excitatory neuron HGNC:1513, HGNC:16961 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023068 thalamic excitatory neuron thalamic excitatory neuron HGNC:1513, HGNC:3180, HGNC:8038 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023068 thalamic excitatory neuron thalamic excitatory neuron HGNC:14605, HGNC:1513 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023068 thalamic excitatory neuron thalamic excitatory neuron HGNC:32696 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023068 thalamic excitatory neuron thalamic excitatory neuron HGNC:11773, HGNC:18864, HGNC:23317, HGNC:52483 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:5993, HGNC:9361 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:13635 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:17995, HGNC:3498 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:130, HGNC:3498 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:17995, HGNC:3498 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:30400, HGNC:4871 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:19194, HGNC:3498, HGNC:74 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:11045, HGNC:11046, HGNC:14872 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:11553, HGNC:130 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:10937, HGNC:42872 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:3498, HGNC:7060 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:26213, HGNC:29836 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:5993, HGNC:9361 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:3498, HGNC:7060 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:130, HGNC:3498 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:30400, HGNC:4871 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:26213, HGNC:29836 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:10937, HGNC:42872 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:11045, HGNC:11046, HGNC:14872 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:11553, HGNC:130 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:13635 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:19194, HGNC:3498, HGNC:74 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023073 choroid plexus cell choroid plexus cell HGNC:14344, HGNC:5147 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023073 choroid plexus cell choroid plexus cell HGNC:12405, HGNC:4462 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023073 choroid plexus cell choroid plexus cell HGNC:18695, HGNC:43906, HGNC:9086 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023073 choroid plexus cell choroid plexus cell HGNC:3791, HGNC:8824 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002743 basal forebrain basal forebrain CL:4023073 choroid plexus cell choroid plexus cell HGNC:356, HGNC:9211 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002743 basal forebrain basal forebrain CL:4023073 choroid plexus cell choroid plexus cell HGNC:5196 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002743 basal forebrain basal forebrain CL:4023073 choroid plexus cell choroid plexus cell HGNC:18083, HGNC:34, HGNC:9211 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023073 choroid plexus cell choroid plexus cell HGNC:14344, HGNC:5147 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002743 basal forebrain basal forebrain CL:4023073 choroid plexus cell choroid plexus cell HGNC:356, HGNC:9211 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023073 choroid plexus cell choroid plexus cell HGNC:12405, HGNC:4462 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002743 basal forebrain basal forebrain CL:4023073 choroid plexus cell choroid plexus cell HGNC:18083, HGNC:34, HGNC:9211 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002743 basal forebrain basal forebrain CL:4023073 choroid plexus cell choroid plexus cell HGNC:5196 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023073 choroid plexus cell choroid plexus cell HGNC:18695, HGNC:43906, HGNC:9086 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023073 choroid plexus cell choroid plexus cell HGNC:3791, HGNC:8824 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:10882, HGNC:13604, HGNC:53062, HGNC:9446 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:10882, HGNC:28572, HGNC:7596, HGNC:8139 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:10725, HGNC:9005 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:23319, HGNC:9005 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:10882, HGNC:1663, HGNC:6714 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:11517 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:11517, HGNC:39988, HGNC:42742 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:3969, HGNC:42742 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:21591, HGNC:42742 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:28554, HGNC:42742 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:10882, HGNC:13604, HGNC:53062, HGNC:9446 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:10882, HGNC:28572, HGNC:7596, HGNC:8139 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:10725, HGNC:9005 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:23319, HGNC:9005 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:10882, HGNC:1663, HGNC:6714 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:11517 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:11517, HGNC:39988, HGNC:42742 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:3969, HGNC:42742 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:21591, HGNC:42742 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:10882, HGNC:2356, HGNC:9005 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:10882, HGNC:2356, HGNC:9005 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:28554, HGNC:42742 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:15576, HGNC:43906, HGNC:52895 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:1514, HGNC:21641, HGNC:23631 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:14866, HGNC:43906, HGNC:9477, HGNC:9957 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:22128, HGNC:31110, HGNC:7941 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:20754, HGNC:23631, HGNC:44222, HGNC:6714 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:1077, HGNC:19194, HGNC:43906 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:10259, HGNC:1077, HGNC:43906 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:23631, HGNC:7941 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:25723, HGNC:43906, HGNC:53587, HGNC:7941 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:10725, HGNC:43906, HGNC:52895, HGNC:9477 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:10725, HGNC:11510, HGNC:30506, HGNC:43906, HGNC:53587 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:15576, HGNC:30506, HGNC:37078 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:10725, HGNC:11510, HGNC:30506, HGNC:43906, HGNC:53587 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:10725, HGNC:43906, HGNC:52895, HGNC:9477 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:15576, HGNC:30506, HGNC:37078 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:25723, HGNC:43906, HGNC:53587, HGNC:7941 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:23631, HGNC:7941 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:10259, HGNC:1077, HGNC:43906 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:1077, HGNC:19194, HGNC:43906 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:20754, HGNC:23631, HGNC:44222, HGNC:6714 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:22128, HGNC:31110, HGNC:7941 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:14866, HGNC:43906, HGNC:9477, HGNC:9957 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:1514, HGNC:21641, HGNC:23631 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:15576, HGNC:43906, HGNC:52895 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0016405 pulmonary capillary pulmonary capillary CL:4028002 alveolar capillary type 1 endothelial cell CAP1 general capillary gCap HGNC:13635, HGNC:19832, HGNC:2047, HGNC:24945, HGNC:30288, HGNC:339, HGNC:339, HGNC:35454, HGNC:6024, HGNC:6024, HGNC:7884, HGNC:8823 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 Lung +UBERON:0016405 pulmonary capillary pulmonary capillary CL:4028003 alveolar capillary type 2 endothelial cell CAP2 aerocyte capillary aCap HGNC:1375, HGNC:1375, HGNC:16665, HGNC:16665, HGNC:19832, HGNC:2047, HGNC:3180, HGNC:3180, HGNC:35454, HGNC:7884, HGNC:8823 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 Lung +UBERON:0002299 alveolus of lung alveolus of lung on respiratory bronchiole CL:4028004 alveolar type 1 fibroblast cell alveolar type 1 fibroblast cell HGNC:11632, HGNC:12780, HGNC:14674, HGNC:2198, HGNC:2213, HGNC:248, HGNC:2705, HGNC:3600, HGNC:3600, HGNC:3691, HGNC:6724, HGNC:7035 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 Lung +UBERON:0002173 pulmonary alveolar duct pulmonary alveolar duct CL:4028004 alveolar type 1 fibroblast cell alveolar type 1 fibroblast cell HGNC:11632, HGNC:12780, HGNC:14674, HGNC:2198, HGNC:2213, HGNC:248, HGNC:2705, HGNC:3600, HGNC:3600, HGNC:3691, HGNC:6724, HGNC:7035 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 Lung +UBERON:0008870 pulmonary alveolar parenchyma pulmonary alveolar parenchyma CL:4028004 alveolar type 1 fibroblast cell alveolar type 1 fibroblast cell HGNC:11632, HGNC:12780, HGNC:14674, HGNC:2198, HGNC:2213, HGNC:248, HGNC:2705, HGNC:3600, HGNC:3600, HGNC:3691, HGNC:6724, HGNC:7035 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 Lung +UBERON:0002173 pulmonary alveolar duct pulmonary alveolar duct CL:4028006 adventitial fibroblast adventitial fibroblast HGNC:17104, HGNC:2198, HGNC:2213, HGNC:2700, HGNC:2705, HGNC:28701, HGNC:29673, HGNC:3600, HGNC:3600, HGNC:6724, HGNC:7035 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 Lung +UBERON:0008870 pulmonary alveolar parenchyma pulmonary alveolar parenchyma CL:4028006 adventitial fibroblast adventitial fibroblast HGNC:17104, HGNC:2198, HGNC:2213, HGNC:2700, HGNC:2705, HGNC:28701, HGNC:29673, HGNC:3600, HGNC:3600, HGNC:6724, HGNC:7035 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 Lung +UBERON:0002299 alveolus of lung alveolus of lung on respiratory bronchiole CL:4028006 adventitial fibroblast adventitial fibroblast HGNC:17104, HGNC:2198, HGNC:2213, HGNC:2700, HGNC:2705, HGNC:28701, HGNC:29673, HGNC:3600, HGNC:3600, HGNC:6724, HGNC:7035 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 Lung +UBERON:0004196 proximal convoluted tubule segment 1 proximal convoluted tubule segment 1 CL:4030009 epithelial cell of proximal tubule segment 1 Proximal Tubule Epithelial Cell Segment 1 HGNC:10970, HGNC:10972, HGNC:11019, HGNC:11037, HGNC:28750, HGNC:9453 DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1038/s41586-020-2941-1|DOI:10.1073/pnas.2005477117|DOI:10.1681/ASN.2020010071|PMID:31249312|PMCID:PMC6597610|PMID:31689386 Kidney +UBERON:0004197 proximal convoluted tubule segment 2 proximal convoluted tubule segment 2 CL:4030010 epithelial cell of proximal tubule segment 2 Proximal Tubule Epithelial Cell Segment 2 HGNC:10970, HGNC:10972, HGNC:11019, HGNC:14430, HGNC:23091, HGNC:32017 DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1073/pnas.2005477117|DOI:10.1681/ASN.2020010071|PMID:31249312|PMCID:PMC6597610|PMID:31689386 Kidney +UBERON:0001290 proximal straight tubule proximal straight tubule segment 3 CL:4030011 epithelial cell of proximal tubule segment 3 Proximal Tubule Cell Epithelial Segment 3 HGNC:10929, HGNC:10971, HGNC:18210, HGNC:21637, HGNC:23091, HGNC:633, HGNC:633 DOI:10.1038/s41467-019-10861-2|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1038/s41586-020-2941-1|DOI:10.1073/pnas.2005477117|DOI:10.1681/ASN.2020010071|PMID:31249312|PMCID:PMC6597610|PMID:31689386 Kidney +UBERON:0001289 descending limb of loop of Henle Loop of Henle (Thin Limb) CL:4030012 kidney loop of Henle short descending thin limb epithelial cell Descending Thin Limb Cell Type 1 HGNC:10919, HGNC:11255, HGNC:11530, HGNC:21637, HGNC:2303, HGNC:2389, HGNC:5360, HGNC:6188 DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|DOI:10.1152/ajprenal.2000.278.1.F52|DOI:10.1681/ASN.2020010071|PMID:31249312|PMCID:PMC6597610 Kidney +UBERON:0001289 descending limb of loop of Henle Loop of Henle (Thin Limb) CL:4030013 kidney loop of Henle long descending thin limb outer medulla epithelial cell Descending Thin Limb Cell Type 2 HGNC:11073, HGNC:11530, HGNC:20862, HGNC:2389, HGNC:633, HGNC:633 Kidney +UBERON:0001289 descending limb of loop of Henle Loop of Henle (Thin Limb) CL:4030013 kidney loop of Henle long descending thin limb outer medulla epithelial cell Descending Thin Limb Cell Type 2 HGNC:11073, HGNC:11530, HGNC:16438, HGNC:20862, HGNC:2389, HGNC:633, HGNC:633 DOI:10.1101/2021.07.28.454201|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1038/s41467-019-10861-2|DOI:10.1681/ASN.2020010071|DOI:10.1152/ajprenal.2000.278.1.F52|PMID:31689386 Kidney +UBERON:0001289 descending limb of loop of Henle Loop of Henle (Thin Limb) CL:4030013 kidney loop of Henle long descending thin limb outer medulla epithelial cell Descending Thin Limb Cell Type 2 HGNC:11073, HGNC:11530, HGNC:16438, HGNC:20862, HGNC:2389, HGNC:633, HGNC:633 DOI:10.1101/2021.07.28.454201|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1038/s41467-019-10861-2|DOI:10.1681/ASN.2020010071|DOI:10.1152/ajprenal.2000.278.1.F52|PMID:31689386 multi_loc +UBERON:0001289 descending limb of loop of Henle Loop of Henle (Thin Limb) CL:4030013 kidney loop of Henle long descending thin limb outer medulla epithelial cell Descending Thin Limb Cell Type 2 HGNC:11073, HGNC:11530, HGNC:20862, HGNC:2389, HGNC:633, HGNC:633 multi_loc +UBERON:0001289 descending limb of loop of Henle Loop of Henle (Thin Limb) CL:4030014 kidney loop of Henle long descending thin limb inner medulla epithelial cell Descending Thin Limb Cell Type 3 HGNC:10832, HGNC:10919, HGNC:11530, HGNC:16438, HGNC:2032, HGNC:2303, HGNC:2389 DOI:10.1101/2021.07.28.454201|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1038/s41467-019-10861-2|DOI:10.1152/ajprenal.2000.278.2.F202|DOI:10.1152/ajprenal.2000.278.1.F52|DOI:10.1681/ASN.2020010071|PMID:31689386 Kidney +UBERON:0001232 collecting duct of renal tubule Collecting Duct CL:4030015 kidney collecting duct alpha-intercalated cell Collecting Duct Intercalated Cell Type A HGNC:11027, HGNC:14467, HGNC:27220, HGNC:6342, HGNC:639 DOI:10.1038/s41467-019-10861-2|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|PMID:31249312|PMCID:PMC6597610|PMID:31689386 Kidney +UBERON:0001292 distal convoluted tubule Distal Convolution CL:4030016 epithelial cell of early distal convoluted tubule Distal Convoluted Tubule Cell Type 1 HGNC:10912, HGNC:17995 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1681/ASN.2020010071|DOI:10.1681/ASN.2020010071|PMID:31249312|PMCID:PMC6597610|PMID:32358040 Kidney +UBERON:0001292 distal convoluted tubule Distal Convolution CL:4030017 epithelial cell of late distal convoluted tubule Distal Convoluted Tubule Cell Type 2 HGNC:10602, HGNC:10912, HGNC:11068, HGNC:1434, HGNC:3145, HGNC:5209 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1681/ASN.2020010071|DOI:10.1681/ASN.2020010071|PMID:31249312|PMCID:PMC6597610|PMID:32358040 Kidney +UBERON:0005097 renal connecting tubule Connecting Tubule CL:4030018 kidney connecting tubule principal cell Connecting Tubule Principal Cell HGNC:10602, HGNC:4028, HGNC:634, HGNC:634, HGNC:636 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1681/ASN.2020010071|DOI:10.1038/s41586-020-2941-1|PMID:31249312|PMCID:PMC6597610|PMID:32358040 Kidney +UBERON:0005097 renal connecting tubule Connecting Tubule CL:4030019 kidney connecting tubule intercalated cell Connecting Tubule Intercalated Cell HGNC:11068, HGNC:1373, HGNC:18266 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1681/ASN.2020010071|DOI:10.1038/s41586-020-2941-1|PMID:31249312|PMCID:PMC6597610|PMID:32358040 Kidney +UBERON:0005097 renal connecting tubule Connecting Tubule CL:4030020 kidney connecting tubule alpha-intercalated cell Connecting Tubule Intercalated Cell Type A HGNC:11027, HGNC:11068, HGNC:14467, HGNC:639, HGNC:8076 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1681/ASN.2020010071|PMID:31249312|PMCID:PMC6597610|PMID:32358040 Kidney +UBERON:0005097 renal connecting tubule Connecting Tubule CL:4030021 kidney connecting tubule beta-intercalated cell Intercalated Cell Type B HGNC:11035, HGNC:23616, HGNC:6093, HGNC:8818 DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41467-019-10861-2|DOI:10.1681/ASN.2020010071|PMID:31249312|PMCID:PMC6597610|PMID:32358040 Kidney +UBERON:0005215 kidney interstitium Interstitium CL:4030022 renal medullary fibroblast Medullary Fibroblast HGNC:11509, HGNC:24039, HGNC:2705, HGNC:5318, HGNC:6277, HGNC:7656 DOI:10.1101/2021.07.28.454201 Kidney +UBERON:0001791 inner nuclear layer of retina inner nuclear layer CL:4030028 glycinergic amacrine cell Glycinergic Amacrine Cell HGNC:11510, HGNC:1435, HGNC:19087, HGNC:20151, HGNC:21637, HGNC:9704, HGNC:9723 DOI:10.1002/cne.10985|DOI:10.1016/j.preteyeres.2020.100844|DOI:10.1523/JNEUROSCI.0907-11.2011|DOI:10.1017/S0952523809090075|DOI:10.1002/cne.21666 Eye +UBERON:0001335 prostatic urethra prostatic urethra CL:4032000 club-like cell of prostatic urethral epithelium club cell of prostatic urethra HGNC:12523, HGNC:18384, HGNC:9500 doi:10.1002/path.5751 Prostate +UBERON:8600012 submucosal gland acinus submucosal gland acinus CL:4033003 myoepithelial cell of bronchus submucosal gland myoepithelial cell of bronchus submucosal gland HGNC:11529, HGNC:130, HGNC:130, HGNC:15979, HGNC:1748, HGNC:2155, HGNC:3318, HGNC:4027, HGNC:6416, HGNC:6442, HGNC:7569 Lung +UBERON:8600012 submucosal gland acinus submucosal gland acinus CL:4033005 serous secreting cell of bronchus submucosal gland serous secreting cell of bronchus submucosal gland HGNC:11529, HGNC:1748, HGNC:20657, HGNC:3318, HGNC:4027, HGNC:6678, HGNC:6720, HGNC:6720, HGNC:6740, HGNC:6740, HGNC:8968 Lung +UBERON:0002339 epithelium of lobar bronchus lobar bronchial epithelium CL:4033007 brush cell of epithelium of lobar bronchus tuft cell HGNC:11529, HGNC:14323, HGNC:14323, HGNC:1748, HGNC:19864, HGNC:19864, HGNC:20657, HGNC:2700, HGNC:2700, HGNC:3318, HGNC:4027, HGNC:739 Lung +UBERON:0004849 respiratory system venous endothelium respiratory system venous endothelium CL:4033008 vein endothelial cell of respiratory system vein endothelial cell of respiratory system HGNC:12726, HGNC:16041, HGNC:19832, HGNC:2047, HGNC:30552, HGNC:35454, HGNC:4035, HGNC:4035, HGNC:7884, HGNC:7976, HGNC:8823 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 Lung +UBERON:0004849 respiratory system venous endothelium respiratory system venous endothelium CL:4033008 vein endothelial cell of respiratory system vein endothelial cell of respiratory system HGNC:13635, HGNC:19832, HGNC:2047, HGNC:35454, HGNC:4035, HGNC:7884 Lung +UBERON:0004849 respiratory system venous endothelium respiratory system venous endothelium CL:4033008 vein endothelial cell of respiratory system vein endothelial cell of respiratory system HGNC:12726, HGNC:16041, HGNC:19832, HGNC:2047, HGNC:30552, HGNC:35454, HGNC:4035, HGNC:4035, HGNC:7884, HGNC:7976, HGNC:8823 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 multi_loc +UBERON:0004849 respiratory system venous endothelium respiratory system venous endothelium CL:4033008 vein endothelial cell of respiratory system vein endothelial cell of respiratory system HGNC:13635, HGNC:19832, HGNC:2047, HGNC:35454, HGNC:4035, HGNC:7884 multi_loc +UBERON:0004849 respiratory system venous endothelium respiratory system venous endothelium CL:4033008 vein endothelial cell of respiratory system vein endothelial cell of respiratory system HGNC:19832, HGNC:2047, HGNC:35454, HGNC:7178, HGNC:7884 multi_loc +UBERON:0004849 respiratory system venous endothelium respiratory system venous endothelium CL:4033008 vein endothelial cell of respiratory system vein endothelial cell of respiratory system HGNC:19832, HGNC:2047, HGNC:35454, HGNC:7178, HGNC:7884 Lung +UBERON:0002339 epithelium of lobar bronchus lobar bronchial epithelium CL:4033009 goblet cell of epithelium of lobar bronchus goblet cell of epithelium of lobar bronchus HGNC:11529, HGNC:11756, HGNC:16438, HGNC:17257, HGNC:1748, HGNC:20657, HGNC:328, HGNC:328, HGNC:3318, HGNC:4027, HGNC:7515, HGNC:7515, HGNC:7516, HGNC:8659 Lung +UBERON:0002339 epithelium of lobar bronchus lobar bronchial epithelium CL:4033010 neuroendocrine cell of epithelium of lobar bronchus neuroendocrine cell of epithelium of lobar bronchus HGNC:11529, HGNC:1437, HGNC:1437, HGNC:1748, HGNC:1757, HGNC:1929, HGNC:3318, HGNC:4027, HGNC:4605, HGNC:4605, HGNC:738, HGNC:8008 Lung +UBERON:0000114 lung connective tissue lung connective tissue CL:4033016 secondary crest myofibroblast secondary crest myofibroblast HGNC:130, HGNC:130, HGNC:14342, HGNC:144, HGNC:2198, HGNC:2705, HGNC:6715, HGNC:7035, HGNC:7569, HGNC:8804 Lung +UBERON:0004517 smooth muscle tissue of respiratory bronchiole smooth muscle tissue of respiratory bronchiole CL:4033017 bronchiolar smooth muscle cell bronchiolar smooth muscle cell HGNC:11553, HGNC:11553, HGNC:130, HGNC:130, HGNC:144, HGNC:19719, HGNC:19719, HGNC:2155, HGNC:2155, HGNC:2198, HGNC:2705, HGNC:2770, HGNC:7035, HGNC:7569, HGNC:9080 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 Lung +UBERON:0004515 smooth muscle tissue of bronchiole smooth muscle tissue of bronchiole CL:4033017 bronchiolar smooth muscle cell bronchiolar smooth muscle cell HGNC:11553, HGNC:11553, HGNC:130, HGNC:130, HGNC:19719, HGNC:19719, HGNC:2155, HGNC:2155, HGNC:2198, HGNC:2705, HGNC:2770, HGNC:7035, HGNC:7569, HGNC:9080 Lung +UBERON:0004516 smooth muscle tissue of terminal bronchiole smooth muscle tissue of terminal bronchiole CL:4033017 bronchiolar smooth muscle cell bronchiolar smooth muscle cell HGNC:11553, HGNC:11553, HGNC:130, HGNC:130, HGNC:19719, HGNC:19719, HGNC:2155, HGNC:2155, HGNC:2198, HGNC:2705, HGNC:2770, HGNC:7035, HGNC:7569, HGNC:9080 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 Lung +UBERON:0000114 lung connective tissue lung connective tissue CL:4033018 lung megakaryocyte lung megakaryocyte HGNC:4439, HGNC:6138, HGNC:6138, HGNC:6156, HGNC:6156, HGNC:8861, HGNC:8861 Lung +UBERON:0001791 inner nuclear layer of retina inner nuclear layer CL:4033019 ON-blue cone bipolar cell blue cone bipolar cell HGNC:1569 DOI:10.1016/j.preteyeres.2020.100844 Eye +UBERON:8600012 submucosal gland acinus submucosal gland acinus CL:4033022 mucus secreting cell of bronchus submucosal gland mucus secreting cell of bronchus submucosal gland HGNC:11529, HGNC:17257, HGNC:17257, HGNC:1748, HGNC:20657, HGNC:328, HGNC:3318, HGNC:4027, HGNC:7516, HGNC:7516 Lung +UBERON:8600013 submucosal gland collecting duct submucosal gland collecting duct CL:4033023 airway submucosal gland collecting duct epithelial cell airway submucosal gland collecting duct epithelial cell HGNC:11529, HGNC:15749, HGNC:15749, HGNC:1748, HGNC:20657, HGNC:3318, HGNC:4027, HGNC:409, HGNC:7076, HGNC:9867 Lung +UBERON:8600013 submucosal gland collecting duct submucosal gland collecting duct CL:4033024 airway submucosal gland duct basal cell airway submucosal gland duct basal cell HGNC:11529, HGNC:15979, HGNC:15979, HGNC:1748, HGNC:20657, HGNC:3318, HGNC:3800, HGNC:3800, HGNC:4027, HGNC:6416, HGNC:6416, HGNC:6442, HGNC:6442 multi_loc +UBERON:8600013 submucosal gland collecting duct submucosal gland collecting duct CL:4033024 airway submucosal gland duct basal cell airway submucosal gland duct basal cell HGNC:11529, HGNC:15979, HGNC:15979, HGNC:1748, HGNC:20657, HGNC:3318, HGNC:3800, HGNC:4027, HGNC:6416, HGNC:6416, HGNC:6442, HGNC:6442, HGNC:7809 multi_loc +UBERON:8600013 submucosal gland collecting duct submucosal gland collecting duct CL:4033024 airway submucosal gland duct basal cell airway submucosal gland duct basal cell HGNC:11529, HGNC:15979, HGNC:15979, HGNC:1748, HGNC:20657, HGNC:3318, HGNC:3800, HGNC:4027, HGNC:6416, HGNC:6416, HGNC:6442, HGNC:6442, HGNC:7809 Lung +UBERON:8600013 submucosal gland collecting duct submucosal gland collecting duct CL:4033024 airway submucosal gland duct basal cell airway submucosal gland duct basal cell HGNC:11529, HGNC:15979, HGNC:15979, HGNC:1748, HGNC:20657, HGNC:3318, HGNC:3800, HGNC:3800, HGNC:4027, HGNC:6416, HGNC:6416, HGNC:6442, HGNC:6442 Lung +UBERON:0001956 cartilage of bronchus cartilage of bronchus CL:4033026 lung perichondrial fibroblast lung perichondrial fibroblast HGNC:11204, HGNC:2198, HGNC:2200, HGNC:2200, HGNC:2213, HGNC:2705, HGNC:3600, HGNC:6724, HGNC:7035 Lung +UBERON:0001791 inner nuclear layer of retina inner nuclear layer CL:4033027 diffuse bipolar 1 cell Diffuse bipolar 1 (DB1) HGNC:16941 DOI:10.1002/cne.22756 Eye +UBERON:0001791 inner nuclear layer of retina inner nuclear layer CL:4033028 diffuse bipolar 2 cell Diffuse bipolar 2 cell HGNC:10940 DOI:10.1002/cne.903480410|DOI:10.1002/(SICI)1096-9861(20000103)416:1<19::AID-CNE3>3.0.CO;2-H|DOI:10.1002/cne.10491 Eye +UBERON:0001791 inner nuclear layer of retina inner nuclear layer CL:4033029 diffuse bipolar 3a cell Diffuse bipolar 3a cell HGNC:10585, HGNC:1384, HGNC:1434, HGNC:4845 DOI:10.1016/j.preteyeres.2020.100844|DOI:10.1002/cne.10491|DOI:10.1523/JNEUROSCI.1249-13.2013 Eye +UBERON:0001791 inner nuclear layer of retina inner nuclear layer CL:4033030 diffuse bipolar 3b cell Diffuse bipolar 3b cell HGNC:1394, HGNC:4845 DOI:10.1017/s0952523800011391 Eye +UBERON:0001791 inner nuclear layer of retina inner nuclear layer CL:4033031 diffuse bipolar 4 cell Diffuse bipolar 4 cell HGNC:10585, HGNC:1394, HGNC:4845, HGNC:9393, HGNC:9393 DOI:10.1002/cne.22756 Eye +UBERON:0001791 inner nuclear layer of retina inner nuclear layer CL:4033033 flat midget bipolar cell Flat midget bipolar cell HGNC:26483, HGNC:9937 DOI:10.1016/j.preteyeres.2020.100844|DOI:10.1002/cne.10491|NoDOI Eye +UBERON:0001791 inner nuclear layer of retina inner nuclear layer CL:4033034 invaginating midget bipolar cell invaginating bipolar cell HGNC:1569 DOI:10.1002/cne.22756 Eye diff --git a/logs/ct_loc_markers/multi_loc_report.tsv b/logs/ct_loc_markers/multi_loc_report.tsv new file mode 100644 index 000000000..22f578a63 --- /dev/null +++ b/logs/ct_loc_markers/multi_loc_report.tsv @@ -0,0 +1,1031 @@ +Terminal AS/ID Terminal AS/label Terminal AS/user_label Terminal CT/ID Terminal CT/label Terminal CT/user_label Markers References Table +UBERON:0000955 brain brain CL:0000057 fibroblast fibroblast HGNC:11040 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000057 fibroblast fibroblast HGNC:30988, HGNC:9591 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000057 fibroblast fibroblast HGNC:3770, HGNC:38, HGNC:53007 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000057 fibroblast fibroblast HGNC:1077, HGNC:11005, HGNC:19090 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000057 fibroblast fibroblast HGNC:11595, HGNC:6715 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000057 fibroblast fibroblast HGNC:1346, HGNC:2198, HGNC:3601 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000057 fibroblast fibroblast HGNC:2192, HGNC:30927 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000057 fibroblast fibroblast HGNC:1072, HGNC:1346 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000057 fibroblast fibroblast HGNC:1346, HGNC:2198, HGNC:3601 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000057 fibroblast fibroblast HGNC:11595, HGNC:6715 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000057 fibroblast fibroblast HGNC:1077, HGNC:11005, HGNC:19090 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000057 fibroblast fibroblast HGNC:3770, HGNC:38, HGNC:53007 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000057 fibroblast fibroblast HGNC:1072, HGNC:1346 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000057 fibroblast fibroblast HGNC:30988, HGNC:9591 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000057 fibroblast fibroblast HGNC:11040 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000057 fibroblast fibroblast HGNC:2192, HGNC:30927 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:0000065 ependymal cell ependymal cell HGNC:8038 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000065 ependymal cell ependymal cell HGNC:12261, HGNC:27287, HGNC:8239 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000065 ependymal cell ependymal cell HGNC:1487, HGNC:2360, HGNC:8239 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000065 ependymal cell ependymal cell HGNC:1487 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000065 ependymal cell ependymal cell HGNC:12261, HGNC:27287, HGNC:8239 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000065 ependymal cell ependymal cell HGNC:8239 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000065 ependymal cell ependymal cell HGNC:12405, HGNC:37261 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000065 ependymal cell ependymal cell HGNC:28395, HGNC:37261 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:0000065 ependymal cell ependymal cell HGNC:18651, HGNC:37261, HGNC:42700 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000065 ependymal cell ependymal cell HGNC:3690, HGNC:37261, HGNC:5318 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000065 ependymal cell ependymal cell HGNC:12405, HGNC:37261 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000065 ependymal cell ependymal cell HGNC:28395, HGNC:37261 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000065 ependymal cell ependymal cell HGNC:1487 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000065 ependymal cell ependymal cell HGNC:1487, HGNC:2360, HGNC:8239 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:0000065 ependymal cell ependymal cell HGNC:8038 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000065 ependymal cell ependymal cell HGNC:3690, HGNC:37261, HGNC:5318 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:0000065 ependymal cell ependymal cell HGNC:18651, HGNC:37261, HGNC:42700 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000065 ependymal cell ependymal cell HGNC:8239 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:8410042 arteriole of lymph node Arteriole CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1662, HGNC:1697, HGNC:17474, HGNC:1764, HGNC:29602, HGNC:30455, HGNC:3349, HGNC:3763, HGNC:4035, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:6895, HGNC:8823, HGNC:9459, HGNC:9707 DOI:10.1371/journal.pone.0094781|DOI:10.1369/jhc.4A6514.2005|ParkSM,AngelCE,McIntoshJD,MansellC,ChenCJ,CebonJ,DunbarPR|Mappingthedistinctivepopulationsoflymphaticendothelialcellsindifferentzonesofhumanlymphnodes|PLoSOne|2014Apr14;94:e94781|doi:10|1371/journal|pone|0094781|Erratumin:PLoSOne|2014;98:e106814|Mansell,ClaudiaM[correctedtoMansell,ClaudiaJ]|PMID:24733110;PMCID:PMC3986404||PusztaszeriMP,SeelentagW,BosmanFT|ImmunohistochemicalexpressionofendothelialmarkersCD31,CD34,vonWillebrandfactor,andFli-1innormalhumantissues|JHistochemCytochem|2006Apr;544:385-95|doi:10|1369/jhc|4A6514|2005|Epub2005Oct18|PMID:16234507| Lymph_node +UBERON:8410041 venule of lymph node Venule CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1662, HGNC:1697, HGNC:17474, HGNC:1764, HGNC:29602, HGNC:30455, HGNC:3763, HGNC:4035, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:6895, HGNC:8823, HGNC:8823, HGNC:9459, HGNC:9707 DOI:10.1371/journal.pone.0094781|DOI:10.1369/jhc.4A6514.2005|ParkSM,AngelCE,McIntoshJD,MansellC,ChenCJ,CebonJ,DunbarPR|Mappingthedistinctivepopulationsoflymphaticendothelialcellsindifferentzonesofhumanlymphnodes|PLoSOne|2014Apr14;94:e94781|doi:10|1371/journal|pone|0094781|Erratumin:PLoSOne|2014;98:e106814|Mansell,ClaudiaM[correctedtoMansell,ClaudiaJ]|PMID:24733110;PMCID:PMC3986404||PusztaszeriMP,SeelentagW,BosmanFT|ImmunohistochemicalexpressionofendothelialmarkersCD31,CD34,vonWillebrandfactor,andFli-1innormalhumantissues|JHistochemCytochem|2006Apr;544:385-95|doi:10|1369/jhc|4A6514|2005|Epub2005Oct18|PMID:16234507| Lymph_node +UBERON:8410042 arteriole of lymph node Arteriole CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1662, HGNC:1697, HGNC:17474, HGNC:1764, HGNC:29602, HGNC:30455, HGNC:3349, HGNC:3763, HGNC:4035, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:6895, HGNC:8823, HGNC:9459, HGNC:9707 DOI:10.1371/journal.pone.0094781|DOI:10.1369/jhc.4A6514.2005|ParkSM,AngelCE,McIntoshJD,MansellC,ChenCJ,CebonJ,DunbarPR|Mappingthedistinctivepopulationsoflymphaticendothelialcellsindifferentzonesofhumanlymphnodes|PLoSOne|2014Apr14;94:e94781|doi:10|1371/journal|pone|0094781|Erratumin:PLoSOne|2014;98:e106814|Mansell,ClaudiaM[correctedtoMansell,ClaudiaJ]|PMID:24733110;PMCID:PMC3986404||PusztaszeriMP,SeelentagW,BosmanFT|ImmunohistochemicalexpressionofendothelialmarkersCD31,CD34,vonWillebrandfactor,andFli-1innormalhumantissues|JHistochemCytochem|2006Apr;544:385-95|doi:10|1369/jhc|4A6514|2005|Epub2005Oct18|PMID:16234507| multi_loc +UBERON:8410041 venule of lymph node Venule CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1662, HGNC:1697, HGNC:17474, HGNC:1764, HGNC:29602, HGNC:30455, HGNC:3763, HGNC:4035, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:6895, HGNC:8823, HGNC:8823, HGNC:9459, HGNC:9707 DOI:10.1371/journal.pone.0094781|DOI:10.1369/jhc.4A6514.2005|ParkSM,AngelCE,McIntoshJD,MansellC,ChenCJ,CebonJ,DunbarPR|Mappingthedistinctivepopulationsoflymphaticendothelialcellsindifferentzonesofhumanlymphnodes|PLoSOne|2014Apr14;94:e94781|doi:10|1371/journal|pone|0094781|Erratumin:PLoSOne|2014;98:e106814|Mansell,ClaudiaM[correctedtoMansell,ClaudiaJ]|PMID:24733110;PMCID:PMC3986404||PusztaszeriMP,SeelentagW,BosmanFT|ImmunohistochemicalexpressionofendothelialmarkersCD31,CD34,vonWillebrandfactor,andFli-1innormalhumantissues|JHistochemCytochem|2006Apr;544:385-95|doi:10|1369/jhc|4A6514|2005|Epub2005Oct18|PMID:16234507| multi_loc +UBERON:8410042 arteriole of lymph node Arteriole CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1662, HGNC:1689, HGNC:1697, HGNC:17474, HGNC:1764, HGNC:29602, HGNC:30455, HGNC:3349, HGNC:4035, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:6895, HGNC:8823, HGNC:9459, HGNC:9707 DOI:10.1371/journal.pone.0094781|DOI:10.1369/jhc.4A6514.2005|NoDOI|ParkSM,AngelCE,McIntoshJD,MansellC,ChenCJ,CebonJ,DunbarPR|Mappingthedistinctivepopulationsoflymphaticendothelialcellsindifferentzonesofhumanlymphnodes|PLoSOne|2014Apr14;94:e94781|doi:10|1371/journal|pone|0094781|Erratumin:PLoSOne|2014;98:e106814|Mansell,ClaudiaM[correctedtoMansell,ClaudiaJ]|PMID:24733110;PMCID:PMC3986404||PusztaszeriMP,SeelentagW,BosmanFT|ImmunohistochemicalexpressionofendothelialmarkersCD31,CD34,vonWillebrandfactor,andFli-1innormalhumantissues|JHistochemCytochem|2006Apr;544:385-95|doi:10|1369/jhc|4A6514|2005|Epub2005Oct18|PMID:16234507| multi_loc +UBERON:8410041 venule of lymph node Venule CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1662, HGNC:1689, HGNC:1697, HGNC:17474, HGNC:1764, HGNC:29602, HGNC:30455, HGNC:3349, HGNC:4035, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:6895, HGNC:8823, HGNC:9459, HGNC:9707 DOI:10.1371/journal.pone.0094781|DOI:10.1369/jhc.4A6514.2005|NoDOI|ParkSM,AngelCE,McIntoshJD,MansellC,ChenCJ,CebonJ,DunbarPR|Mappingthedistinctivepopulationsoflymphaticendothelialcellsindifferentzonesofhumanlymphnodes|PLoSOne|2014Apr14;94:e94781|doi:10|1371/journal|pone|0094781|Erratumin:PLoSOne|2014;98:e106814|Mansell,ClaudiaM[correctedtoMansell,ClaudiaJ]|PMID:24733110;PMCID:PMC3986404||PusztaszeriMP,SeelentagW,BosmanFT|ImmunohistochemicalexpressionofendothelialmarkersCD31,CD34,vonWillebrandfactor,andFli-1innormalhumantissues|JHistochemCytochem|2006Apr;544:385-95|doi:10|1369/jhc|4A6514|2005|Epub2005Oct18|PMID:16234507| multi_loc +UBERON:8410042 arteriole of lymph node Arteriole CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1662, HGNC:1697, HGNC:17474, HGNC:30455, HGNC:4035, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:6895, HGNC:8823, HGNC:9707 DOI:10.1369/jhc.4A6514.2005|PusztaszeriMP,SeelentagW,BosmanFT|ImmunohistochemicalexpressionofendothelialmarkersCD31,CD34,vonWillebrandfactor,andFli-1innormalhumantissues|JHistochemCytochem|2006Apr;544:385-95|doi:10|1369/jhc|4A6514|2005|Epub2005Oct18|PMID:16234507| Lymph_node +UBERON:8410042 arteriole of lymph node Arteriole CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1662, HGNC:1697, HGNC:17474, HGNC:1764, HGNC:29602, HGNC:30455, HGNC:3349, HGNC:4035, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:6895, HGNC:8823, HGNC:9459, HGNC:9707 DOI:10.1371/journal.pone.0094781|DOI:10.1369/jhc.4A6514.2005|ParkSM,AngelCE,McIntoshJD,MansellC,ChenCJ,CebonJ,DunbarPR|Mappingthedistinctivepopulationsoflymphaticendothelialcellsindifferentzonesofhumanlymphnodes|PLoSOne|2014Apr14;94:e94781|doi:10|1371/journal|pone|0094781|Erratumin:PLoSOne|2014;98:e106814|Mansell,ClaudiaM[correctedtoMansell,ClaudiaJ]|PMID:24733110;PMCID:PMC3986404||PusztaszeriMP,SeelentagW,BosmanFT|ImmunohistochemicalexpressionofendothelialmarkersCD31,CD34,vonWillebrandfactor,andFli-1innormalhumantissues|JHistochemCytochem|2006Apr;544:385-95|doi:10|1369/jhc|4A6514|2005|Epub2005Oct18|PMID:16234507| Lymph_node +UBERON:8410041 venule of lymph node Venule CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1662, HGNC:1689, HGNC:1697, HGNC:17474, HGNC:1764, HGNC:29602, HGNC:30455, HGNC:3349, HGNC:4035, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:6895, HGNC:8823, HGNC:9459, HGNC:9707 DOI:10.1371/journal.pone.0094781|DOI:10.1369/jhc.4A6514.2005|NoDOI|ParkSM,AngelCE,McIntoshJD,MansellC,ChenCJ,CebonJ,DunbarPR|Mappingthedistinctivepopulationsoflymphaticendothelialcellsindifferentzonesofhumanlymphnodes|PLoSOne|2014Apr14;94:e94781|doi:10|1371/journal|pone|0094781|Erratumin:PLoSOne|2014;98:e106814|Mansell,ClaudiaM[correctedtoMansell,ClaudiaJ]|PMID:24733110;PMCID:PMC3986404||PusztaszeriMP,SeelentagW,BosmanFT|ImmunohistochemicalexpressionofendothelialmarkersCD31,CD34,vonWillebrandfactor,andFli-1innormalhumantissues|JHistochemCytochem|2006Apr;544:385-95|doi:10|1369/jhc|4A6514|2005|Epub2005Oct18|PMID:16234507| Lymph_node +UBERON:8410042 arteriole of lymph node Arteriole CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1662, HGNC:1689, HGNC:1697, HGNC:17474, HGNC:1764, HGNC:29602, HGNC:30455, HGNC:3349, HGNC:4035, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:6895, HGNC:8823, HGNC:9459, HGNC:9707 DOI:10.1371/journal.pone.0094781|DOI:10.1369/jhc.4A6514.2005|NoDOI|ParkSM,AngelCE,McIntoshJD,MansellC,ChenCJ,CebonJ,DunbarPR|Mappingthedistinctivepopulationsoflymphaticendothelialcellsindifferentzonesofhumanlymphnodes|PLoSOne|2014Apr14;94:e94781|doi:10|1371/journal|pone|0094781|Erratumin:PLoSOne|2014;98:e106814|Mansell,ClaudiaM[correctedtoMansell,ClaudiaJ]|PMID:24733110;PMCID:PMC3986404||PusztaszeriMP,SeelentagW,BosmanFT|ImmunohistochemicalexpressionofendothelialmarkersCD31,CD34,vonWillebrandfactor,andFli-1innormalhumantissues|JHistochemCytochem|2006Apr;544:385-95|doi:10|1369/jhc|4A6514|2005|Epub2005Oct18|PMID:16234507| Lymph_node +UBERON:8410042 arteriole of lymph node Arteriole CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1662, HGNC:1697, HGNC:17474, HGNC:30455, HGNC:4035, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:6895, HGNC:8823, HGNC:9707 DOI:10.1369/jhc.4A6514.2005|PusztaszeriMP,SeelentagW,BosmanFT|ImmunohistochemicalexpressionofendothelialmarkersCD31,CD34,vonWillebrandfactor,andFli-1innormalhumantissues|JHistochemCytochem|2006Apr;544:385-95|doi:10|1369/jhc|4A6514|2005|Epub2005Oct18|PMID:16234507| multi_loc +UBERON:8410042 arteriole of lymph node Arteriole CL:0000071 blood vessel endothelial cell Blood Vessel Endothelial Cell HGNC:10612, HGNC:11220, HGNC:13635, HGNC:14686, HGNC:1527, HGNC:16041, HGNC:1641, HGNC:1662, HGNC:1662, HGNC:1697, HGNC:17474, HGNC:1764, HGNC:29602, HGNC:30455, HGNC:3349, HGNC:4035, HGNC:4938, HGNC:4940, HGNC:4947, HGNC:4948, HGNC:5344, HGNC:6895, HGNC:8823, HGNC:9459, HGNC:9707 DOI:10.1371/journal.pone.0094781|DOI:10.1369/jhc.4A6514.2005|ParkSM,AngelCE,McIntoshJD,MansellC,ChenCJ,CebonJ,DunbarPR|Mappingthedistinctivepopulationsoflymphaticendothelialcellsindifferentzonesofhumanlymphnodes|PLoSOne|2014Apr14;94:e94781|doi:10|1371/journal|pone|0094781|Erratumin:PLoSOne|2014;98:e106814|Mansell,ClaudiaM[correctedtoMansell,ClaudiaJ]|PMID:24733110;PMCID:PMC3986404||PusztaszeriMP,SeelentagW,BosmanFT|ImmunohistochemicalexpressionofendothelialmarkersCD31,CD34,vonWillebrandfactor,andFli-1innormalhumantissues|JHistochemCytochem|2006Apr;544:385-95|doi:10|1369/jhc|4A6514|2005|Epub2005Oct18|PMID:16234507| multi_loc +UBERON:0000955 brain brain CL:0000127 astrocyte astrocyte HGNC:3180, HGNC:43436, HGNC:5318, HGNC:613 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000127 astrocyte astrocyte HGNC:42700, HGNC:4453, HGNC:5318 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000127 astrocyte astrocyte HGNC:44915, HGNC:5318, HGNC:613 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000127 astrocyte astrocyte HGNC:4235, HGNC:633 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000127 astrocyte astrocyte HGNC:2389, HGNC:4235 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000127 astrocyte astrocyte HGNC:2389, HGNC:4235 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000127 astrocyte astrocyte HGNC:3180, HGNC:43436, HGNC:5318, HGNC:613 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000127 astrocyte astrocyte HGNC:42700, HGNC:4453, HGNC:5318 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000127 astrocyte astrocyte HGNC:44915, HGNC:5318, HGNC:613 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000127 astrocyte astrocyte HGNC:4235, HGNC:633 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000127 astrocyte astrocyte HGNC:18374, HGNC:19719, HGNC:27363, HGNC:42700 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000127 astrocyte astrocyte HGNC:18374, HGNC:19719, HGNC:27363, HGNC:42700 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000128 oligodendrocyte oligodendrocyte HGNC:20707, HGNC:51662, HGNC:9086 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000128 oligodendrocyte oligodendrocyte HGNC:10044, HGNC:20675, HGNC:51662 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000128 oligodendrocyte oligodendrocyte HGNC:20707, HGNC:3432, HGNC:9086 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000128 oligodendrocyte oligodendrocyte HGNC:11740, HGNC:14082, HGNC:23091, HGNC:29268, HGNC:7189 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000128 oligodendrocyte oligodendrocyte HGNC:20707, HGNC:23091, HGNC:23723, HGNC:7189 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000128 oligodendrocyte oligodendrocyte HGNC:11740, HGNC:23091, HGNC:2389, HGNC:29268 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000128 oligodendrocyte oligodendrocyte HGNC:11740, HGNC:14082, HGNC:23091, HGNC:29268, HGNC:7189 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000128 oligodendrocyte oligodendrocyte HGNC:20707, HGNC:23091, HGNC:23723, HGNC:7189 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000128 oligodendrocyte oligodendrocyte HGNC:11740, HGNC:23091, HGNC:2389, HGNC:29268 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000128 oligodendrocyte oligodendrocyte HGNC:20707, HGNC:51662, HGNC:9086 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000128 oligodendrocyte oligodendrocyte HGNC:10044, HGNC:20675, HGNC:51662 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000128 oligodendrocyte oligodendrocyte HGNC:20707, HGNC:3432, HGNC:9086 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:2558, HGNC:28416, HGNC:50913 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:2558, HGNC:54229, HGNC:8133 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:2558, HGNC:352, HGNC:54229 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:18124, HGNC:19191, HGNC:50913 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:18124, HGNC:54124, HGNC:54229 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:3531, HGNC:7228 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:21695, HGNC:38712, HGNC:6152 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:54284, HGNC:9361 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:2558, HGNC:352, HGNC:54229 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:21695, HGNC:38712, HGNC:6152 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:18124, HGNC:19191, HGNC:50913 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:12405, HGNC:17379 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:54284, HGNC:9361 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:2558, HGNC:28416, HGNC:50913 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:18124, HGNC:54124, HGNC:54229 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:3531, HGNC:7228 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:12405, HGNC:17379 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000129 microglial cell microglia HGNC:2558, HGNC:54229, HGNC:8133 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0012271 major duodenal papilla Major duodenal papilla CL:0000146 simple columnar epithelial cell Simple columnar epithelial cell HGNC:1884, HGNC:6107, HGNC:6436, HGNC:6445 Pancreas +UBERON:0012271 major duodenal papilla Major duodenal papilla CL:0000146 simple columnar epithelial cell Simple columnar epithelial cell HGNC:6107, HGNC:6436 Pancreas +UBERON:0012271 major duodenal papilla Major duodenal papilla CL:0000146 simple columnar epithelial cell Simple columnar epithelial cell HGNC:6107, HGNC:6436 multi_loc +UBERON:0012271 major duodenal papilla Major duodenal papilla CL:0000146 simple columnar epithelial cell Simple columnar epithelial cell HGNC:1884, HGNC:6107, HGNC:6436, HGNC:6445 multi_loc +UBERON:0000006 islet of Langerhans Islet of Langerhans CL:0000235 macrophage Macrophage HGNC:1631, HGNC:1693, HGNC:352, HGNC:7228 Pancreas +UBERON:0001961 mucosa-associated lymphoid tissue dermal skin-associated lymphoid tissue CL:0000235 macrophage macrophage HGNC:1631, HGNC:1631, HGNC:1693, HGNC:1693, HGNC:1697, HGNC:1697, HGNC:6149, HGNC:6149, HGNC:7228, HGNC:7228 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 Large_intestine +UBERON:0001961 mucosa-associated lymphoid tissue subcutaneous skin-associated lymphoid tissue CL:0000235 macrophage macrophage HGNC:1673, HGNC:1673, HGNC:1678, HGNC:1678 NoDOI Large_intestine +UBERON:0000006 islet of Langerhans Islet of Langerhans CL:0000235 macrophage Macrophage HGNC:1693, HGNC:352 Pancreas +UBERON:0001961 mucosa-associated lymphoid tissue dermal skin-associated lymphoid tissue CL:0000235 macrophage macrophage HGNC:1631, HGNC:1631, HGNC:1693, HGNC:1693, HGNC:1697, HGNC:1697, HGNC:6149, HGNC:6149, HGNC:7228, HGNC:7228 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 multi_loc +UBERON:0001961 mucosa-associated lymphoid tissue subcutaneous skin-associated lymphoid tissue CL:0000235 macrophage macrophage HGNC:1673, HGNC:1673, HGNC:1678, HGNC:1678 NoDOI multi_loc +UBERON:0000006 islet of Langerhans Islet of Langerhans CL:0000235 macrophage Macrophage HGNC:1693, HGNC:352 multi_loc +UBERON:0000006 islet of Langerhans Islet of Langerhans CL:0000235 macrophage Macrophage HGNC:1631, HGNC:1693, HGNC:352, HGNC:7228 multi_loc +UBERON:0001961 mucosa-associated lymphoid tissue subcutaneous skin-associated lymphoid tissue CL:0000236 B cell B cell HGNC:4502, HGNC:4502, HGNC:6149, HGNC:6149 NoDOI Large_intestine +UBERON:0001961 mucosa-associated lymphoid tissue dermal skin-associated lymphoid tissue CL:0000236 B cell B cell HGNC:1633, HGNC:1633, HGNC:1698, HGNC:1698 NoDOI Large_intestine +UBERON:0001961 mucosa-associated lymphoid tissue dermal skin-associated lymphoid tissue CL:0000236 B cell B cell HGNC:1633, HGNC:1633, HGNC:1698, HGNC:1698 NoDOI multi_loc +UBERON:0001961 mucosa-associated lymphoid tissue subcutaneous skin-associated lymphoid tissue CL:0000236 B cell B cell HGNC:4502, HGNC:4502, HGNC:6149, HGNC:6149 NoDOI multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000402 CNS interneuron CNS interneuron HGNC:10640, HGNC:10776, HGNC:1373, HGNC:30620 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:0000402 CNS interneuron CNS interneuron HGNC:19898, HGNC:2731, HGNC:7029 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000402 CNS interneuron CNS interneuron HGNC:16213, HGNC:16938, HGNC:19898 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:0000402 CNS interneuron CNS interneuron HGNC:11517, HGNC:22950, HGNC:42435, HGNC:676, HGNC:7872 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000402 CNS interneuron CNS interneuron HGNC:10776, HGNC:16097, HGNC:25396, HGNC:30620 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000402 CNS interneuron CNS interneuron HGNC:9607 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000402 CNS interneuron CNS interneuron HGNC:3604, HGNC:40401 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000402 CNS interneuron CNS interneuron HGNC:2192, HGNC:2355 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000402 CNS interneuron CNS interneuron HGNC:10776, HGNC:13841 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000402 CNS interneuron CNS interneuron HGNC:12568, HGNC:24182, HGNC:4587 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000402 CNS interneuron CNS interneuron HGNC:10776, HGNC:13841 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:0000402 CNS interneuron CNS interneuron HGNC:19898, HGNC:2731, HGNC:7029 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000402 CNS interneuron CNS interneuron HGNC:12568, HGNC:24182, HGNC:4587 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000402 CNS interneuron CNS interneuron HGNC:10640, HGNC:10776, HGNC:1373, HGNC:30620 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000402 CNS interneuron CNS interneuron HGNC:3604, HGNC:40401 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000402 CNS interneuron CNS interneuron HGNC:9607 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000402 CNS interneuron CNS interneuron HGNC:10776, HGNC:16097, HGNC:25396, HGNC:30620 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000402 CNS interneuron CNS interneuron HGNC:2192, HGNC:2355 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:0000402 CNS interneuron CNS interneuron HGNC:11517, HGNC:22950, HGNC:42435, HGNC:676, HGNC:7872 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000402 CNS interneuron CNS interneuron HGNC:16213, HGNC:16938, HGNC:19898 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001896 medulla oblongata medulla oblongata CL:0000540 neuron neuron HGNC:3969, HGNC:5137 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000988 pons pons CL:0000540 neuron neuron HGNC:11051, HGNC:52588, HGNC:7000 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:11521, HGNC:18695, HGNC:4324 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:21591, HGNC:26744, HGNC:8138 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:14217, HGNC:25396 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:0000540 neuron neuron HGNC:10259, HGNC:16973, HGNC:8778 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000988 pons pons CL:0000540 neuron neuron HGNC:19087, HGNC:19090, HGNC:49024 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:4855 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:0000540 neuron neuron HGNC:11602, HGNC:8910 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:7872, HGNC:7955 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:14000, HGNC:25396, HGNC:7603 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:19087, HGNC:4172, HGNC:49642, HGNC:6593 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001896 medulla oblongata medulla oblongata CL:0000540 neuron neuron HGNC:19090, HGNC:26002, HGNC:5114 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:19179, HGNC:30620, HGNC:983 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:18695, HGNC:5997 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:21735, HGNC:3467, HGNC:44222, HGNC:50687 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:21735, HGNC:2594, HGNC:31700, HGNC:7976 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:13010, HGNC:16421, HGNC:9459 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:14005, HGNC:21735, HGNC:227, HGNC:26086 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:14217, HGNC:3467 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:21357, HGNC:8138 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:0000540 neuron neuron HGNC:35145 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:21735, HGNC:3666 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:0000540 neuron neuron HGNC:1751, HGNC:18695, HGNC:30620 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:16189, HGNC:43906 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:11049 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:8079, HGNC:8651 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:54290 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:11329, HGNC:26683, HGNC:54353 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:0000540 neuron neuron HGNC:30209 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:14025, HGNC:28838 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001896 medulla oblongata medulla oblongata CL:0000540 neuron neuron HGNC:11743, HGNC:25552, HGNC:7001 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:0000540 neuron neuron HGNC:37078, HGNC:9143 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:11050, HGNC:20692 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:10726, HGNC:4172, HGNC:6654 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000988 pons pons CL:0000540 neuron neuron HGNC:14222, HGNC:27405, HGNC:52588 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:894 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:10889, HGNC:25552, HGNC:6132 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray 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of forebrain CL:0000540 neuron neuron HGNC:1544, HGNC:37078, HGNC:9218 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:11641, HGNC:6593 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:12873, HGNC:6593, HGNC:687 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:11329, HGNC:11641, HGNC:20866 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:19090, HGNC:6653, HGNC:9005 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:19090, HGNC:8619 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:19090, HGNC:3126, HGNC:8518 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:1442, HGNC:2171, HGNC:4392, HGNC:5295, HGNC:7001, HGNC:777 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:0000540 neuron neuron HGNC:11051, HGNC:19087, HGNC:5295, HGNC:8076 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:13733, HGNC:6653, HGNC:9005 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:0000540 neuron neuron HGNC:644, HGNC:6653 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001896 medulla oblongata medulla oblongata CL:0000540 neuron neuron HGNC:11528, HGNC:5114, HGNC:7981 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001896 medulla oblongata medulla oblongata CL:0000540 neuron neuron HGNC:20660, HGNC:5137 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:19087, HGNC:19090, HGNC:4504, HGNC:6551 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000988 pons pons CL:0000540 neuron neuron HGNC:4525, HGNC:52588, HGNC:6481 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:13285, HGNC:2663, HGNC:4172 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:12872, HGNC:21694, HGNC:37462, HGNC:8010 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:6132, HGNC:8138 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001896 medulla oblongata medulla oblongata CL:0000540 neuron neuron HGNC:19087, HGNC:5114, HGNC:8616 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001896 medulla oblongata medulla oblongata CL:0000540 neuron neuron HGNC:10527, HGNC:5137 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:5114, HGNC:6654 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:0000540 neuron neuron HGNC:19087, HGNC:19191 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000988 pons pons CL:0000540 neuron neuron HGNC:11051, HGNC:19090, HGNC:8518 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:15581, HGNC:20779 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:21386, HGNC:22950, HGNC:23206, HGNC:9674 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:12872, HGNC:8518 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:0000540 neuron neuron HGNC:22788 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:0000540 neuron neuron HGNC:2907, HGNC:6132, HGNC:8518 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:5019, HGNC:6132, HGNC:687 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:14005, HGNC:4392 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:0000540 neuron neuron HGNC:10882, HGNC:8518 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:19090, HGNC:23317, HGNC:44222 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:0000540 neuron neuron HGNC:10882, HGNC:9005 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:0000540 neuron neuron HGNC:6132, HGNC:6551 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:777 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001896 medulla oblongata medulla oblongata CL:0000540 neuron neuron HGNC:11051, HGNC:12405, HGNC:14632, HGNC:5295 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:11743, HGNC:6653 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:4172, HGNC:5154 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:30748, HGNC:4172, HGNC:50698, HGNC:51231 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:4172, HGNC:50687 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:11743, HGNC:3341, HGNC:6551 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:11743, HGNC:21587, HGNC:4172, HGNC:4579, HGNC:777 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:11743, HGNC:43906, HGNC:6551 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:20779, HGNC:6551, HGNC:8522 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:10889, HGNC:11517, HGNC:4172 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:14222, HGNC:52588, HGNC:8138 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:11743, HGNC:14222 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001896 medulla oblongata medulla oblongata CL:0000540 neuron neuron HGNC:6136, HGNC:6654 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000988 pons pons CL:0000540 neuron neuron HGNC:11051, HGNC:19090, HGNC:8518 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001896 medulla oblongata medulla oblongata CL:0000540 neuron neuron HGNC:19087, HGNC:5114, HGNC:8616 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:12872, HGNC:21694, HGNC:37462, HGNC:8010 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:13285, HGNC:2663, HGNC:4172 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000988 pons pons CL:0000540 neuron neuron HGNC:4525, HGNC:52588, HGNC:6481 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:19087, HGNC:19090, HGNC:4504, HGNC:6551 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001896 medulla oblongata medulla oblongata CL:0000540 neuron neuron HGNC:20660, HGNC:5137 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001896 medulla oblongata medulla oblongata CL:0000540 neuron neuron HGNC:11528, HGNC:5114, HGNC:7981 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001898 hypothalamus hypothalamus CL:0000540 neuron neuron HGNC:644, HGNC:6653 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:13733, HGNC:6653, HGNC:9005 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:0000540 neuron neuron HGNC:11051, HGNC:19087, HGNC:5295, HGNC:8076 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:1442, HGNC:2171, HGNC:4392, HGNC:5295, HGNC:7001, HGNC:777 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:19090, HGNC:3126, HGNC:8518 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001896 medulla oblongata medulla oblongata CL:0000540 neuron neuron HGNC:10527, HGNC:5137 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:19090, HGNC:8619 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001898 hypothalamus hypothalamus CL:0000540 neuron neuron HGNC:11602, HGNC:8910 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:21591, HGNC:26744, HGNC:8138 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:11521, HGNC:18695, HGNC:4324 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000988 pons pons CL:0000540 neuron neuron HGNC:11051, HGNC:52588, HGNC:7000 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001896 medulla oblongata medulla oblongata CL:0000540 neuron neuron HGNC:3969, HGNC:5137 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:19090, HGNC:6653, HGNC:9005 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:11329, HGNC:11641, HGNC:20866 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:12873, HGNC:6593, HGNC:687 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:11641, HGNC:6593 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:1544, HGNC:37078, HGNC:9218 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:17245, HGNC:23631, HGNC:30988 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:11641, HGNC:19087, HGNC:3126, HGNC:37462 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:4855 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:5114, HGNC:6654 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:0000540 neuron neuron HGNC:19087, HGNC:19191 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:15581, HGNC:20779 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:14217, HGNC:25396 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001898 hypothalamus hypothalamus CL:0000540 neuron neuron HGNC:10259, HGNC:16973, HGNC:8778 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000988 pons pons CL:0000540 neuron neuron HGNC:19087, HGNC:19090, HGNC:49024 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001896 medulla oblongata medulla oblongata CL:0000540 neuron neuron HGNC:6136, HGNC:6654 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:11743, HGNC:14222 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:14222, HGNC:52588, HGNC:8138 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:10889, HGNC:11517, HGNC:4172 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:20779, HGNC:6551, HGNC:8522 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:11743, HGNC:43906, HGNC:6551 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:11743, HGNC:21587, HGNC:4172, HGNC:4579, HGNC:777 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:11743, HGNC:3341, HGNC:6551 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:4172, HGNC:50687 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:30748, HGNC:4172, HGNC:50698, HGNC:51231 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:4172, HGNC:5154 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:11743, HGNC:6653 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001896 medulla oblongata medulla oblongata CL:0000540 neuron neuron HGNC:11051, HGNC:12405, HGNC:14632, HGNC:5295 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:777 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001898 hypothalamus hypothalamus CL:0000540 neuron neuron HGNC:6132, HGNC:6551 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001898 hypothalamus hypothalamus CL:0000540 neuron neuron HGNC:10882, HGNC:9005 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:19090, HGNC:23317, HGNC:44222 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001898 hypothalamus hypothalamus CL:0000540 neuron neuron HGNC:10882, HGNC:8518 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:14005, HGNC:4392 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:5019, HGNC:6132, HGNC:687 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001898 hypothalamus hypothalamus CL:0000540 neuron neuron HGNC:2907, HGNC:6132, HGNC:8518 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001898 hypothalamus hypothalamus CL:0000540 neuron neuron HGNC:22788 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:12872, HGNC:8518 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:21386, HGNC:22950, HGNC:23206, HGNC:9674 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:11517, HGNC:11641, HGNC:9446 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:11641, HGNC:19087, HGNC:2663, HGNC:6352 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:6132, HGNC:8138 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:10854, HGNC:11641, HGNC:30620, HGNC:6594 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:16189, HGNC:43906 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001898 hypothalamus hypothalamus CL:0000540 neuron neuron HGNC:1751, HGNC:18695, HGNC:30620 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:21735, HGNC:3666 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:0000540 neuron neuron HGNC:35145 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:21357, HGNC:8138 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:14217, HGNC:3467 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:14005, HGNC:21735, HGNC:227, HGNC:26086 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:11049 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:13010, HGNC:16421, HGNC:9459 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:21735, HGNC:3467, HGNC:44222, HGNC:50687 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:18695, HGNC:5997 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:19179, HGNC:30620, HGNC:983 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001896 medulla oblongata medulla oblongata CL:0000540 neuron neuron HGNC:19090, HGNC:26002, HGNC:5114 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001891 midbrain midbrain (mesencephalon) CL:0000540 neuron neuron HGNC:19087, HGNC:4172, HGNC:49642, HGNC:6593 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:12695, HGNC:16709, HGNC:23571 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:7872, HGNC:7955 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:21735, HGNC:2594, HGNC:31700, HGNC:7976 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:8079, HGNC:8651 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:14000, HGNC:25396, HGNC:7603 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000988 pons pons CL:0000540 neuron neuron HGNC:14222, HGNC:27405, HGNC:52588 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:19664, HGNC:9218 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:10889, HGNC:25552, HGNC:6132 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:894 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:11050, HGNC:20692 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:0000540 neuron neuron HGNC:37078, HGNC:9143 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001896 medulla oblongata medulla oblongata CL:0000540 neuron neuron HGNC:11743, HGNC:25552, HGNC:7001 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:10726, HGNC:4172, HGNC:6654 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:0000540 neuron neuron HGNC:30209 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:11329, HGNC:26683, HGNC:54353 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0000540 neuron neuron HGNC:54290 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000540 neuron neuron HGNC:14025, HGNC:28838 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001961 mucosa-associated lymphoid tissue dermal skin-associated lymphoid tissue CL:0000545 T-helper 1 cell T helper HGNC:1673, HGNC:1673, HGNC:1678, HGNC:1678 NoDOI multi_loc +UBERON:0001961 mucosa-associated lymphoid tissue dermal skin-associated lymphoid tissue CL:0000545 T-helper 1 cell T helper HGNC:1673, HGNC:1673, HGNC:1678, HGNC:1678 NoDOI Large_intestine +UBERON:0001961 mucosa-associated lymphoid tissue subcutaneous skin-associated lymphoid tissue CL:0000545 T-helper 1 cell T helper HGNC:1673, HGNC:1673, HGNC:1706, HGNC:1706 NoDOI Large_intestine +UBERON:0001961 mucosa-associated lymphoid tissue subcutaneous skin-associated lymphoid tissue CL:0000545 T-helper 1 cell T helper HGNC:1673, HGNC:1673, HGNC:1706, HGNC:1706 NoDOI multi_loc +UBERON:0005751 glomerular visceral epithelium visceral epithelial layer CL:0000653 podocyte Podocyte HGNC:13394, HGNC:7908, HGNC:9171, HGNC:9679 Kidney +UBERON:0005751 glomerular visceral epithelium visceral epithelial layer CL:0000653 podocyte Podocyte HGNC:13394, HGNC:13517, HGNC:23319, HGNC:7908, HGNC:9171, HGNC:9171, HGNC:9679 DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41586-020-2941-1|DOI:10.1073/pnas.2005477117|PMID:31249312|PMCID:PMC6597610 Kidney +UBERON:0005751 glomerular visceral epithelium visceral epithelial layer CL:0000653 glomerular visceral epithelial cell Podocyte HGNC:13394, HGNC:7908, HGNC:9171, HGNC:9171, HGNC:9679 multi_loc +UBERON:0005751 glomerular visceral epithelium visceral epithelial layer CL:0000653 podocyte Podocyte HGNC:13394, HGNC:13517, HGNC:23319, HGNC:7908, HGNC:9171, HGNC:9171, HGNC:9679 DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|DOI:10.1038/s41467-019-10861-2|DOI:10.1038/s41586-020-2941-1|DOI:10.1073/pnas.2005477117|PMID:31249312|PMCID:PMC6597610 multi_loc +UBERON:0005751 glomerular visceral epithelium visceral epithelial layer CL:0000653 glomerular visceral epithelial cell Podocyte HGNC:13394, HGNC:7908, HGNC:9171, HGNC:9171, HGNC:9679 Kidney +UBERON:0005751 glomerular visceral epithelium visceral epithelial layer CL:0000653 podocyte Podocyte HGNC:13394, HGNC:7908, HGNC:9171, HGNC:9679 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:14632, HGNC:52626 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:13600, HGNC:14454, HGNC:20391, HGNC:37219 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:2500, HGNC:52467 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:40401 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:10736, HGNC:19718, HGNC:20391, HGNC:53103 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:3009 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:1527, HGNC:16379, HGNC:20391 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:27823, HGNC:52626, HGNC:53175 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:40401 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:18638, HGNC:6136 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:10727, HGNC:14632, HGNC:52626 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:20391, HGNC:48724 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:14265, HGNC:3446, HGNC:5977 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:16379 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:14265, HGNC:3446, HGNC:5977 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:3179 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:2500, HGNC:9035 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:18638, HGNC:6136 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:27823, HGNC:52626, HGNC:53175 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:1527, HGNC:16379, HGNC:20391 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:3009 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:10736, HGNC:19718, HGNC:20391, HGNC:53103 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:16953, HGNC:22128, HGNC:31401 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:2500, HGNC:52467 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:13600, HGNC:14454, HGNC:20391, HGNC:37219 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:4680 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:3179 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:16379 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:14632, HGNC:52626 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:10727, HGNC:14632, HGNC:52626 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:4680 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:2500, HGNC:9035 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:20391, HGNC:48724 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002600 limbic lobe limbic lobe CL:0000679 glutamatergic neuron glutamatergic neuron HGNC:16953, HGNC:22128, HGNC:31401 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002371 Bone marrow Bone marrow CL:0000764 erythroid lineage cell early erythroid HGNC:11529, HGNC:11763, HGNC:1663, HGNC:1663, HGNC:31397, HGNC:3349, HGNC:4170, HGNC:4702, HGNC:607, HGNC:6251, HGNC:6342, HGNC:6345, HGNC:7553, HGNC:9666 DOI:10.1371/journal.pone.0162209 multi_loc +UBERON:0002371 Bone marrow Bone marrow CL:0000764 erythroid lineage cell mid erythroid HGNC:10006, HGNC:10008, HGNC:11272, HGNC:11763, HGNC:1663, HGNC:1663, HGNC:21256, HGNC:3349, HGNC:4702, HGNC:6342, HGNC:6345, HGNC:9666 multi_loc +UBERON:0002371 Bone marrow Bone marrow CL:0000764 erythroid lineage cell late erythroid HGNC:1093, HGNC:11763, HGNC:1663, HGNC:19911, HGNC:24040, HGNC:3349, HGNC:397, HGNC:4702, HGNC:4824, HGNC:4827, HGNC:4831, HGNC:6342, HGNC:9666 multi_loc +UBERON:0002371 Bone marrow Bone marrow CL:0000764 erythroid lineage cell late erythroid HGNC:1093, HGNC:11763, HGNC:1663, HGNC:19911, HGNC:24040, HGNC:3349, HGNC:397, HGNC:4702, HGNC:4824, HGNC:4827, HGNC:4831, HGNC:6342, HGNC:9666 Bone-Marrow +UBERON:0002371 Bone marrow Bone marrow CL:0000764 erythroid lineage cell early erythroid HGNC:11529, HGNC:11763, HGNC:1663, HGNC:1663, HGNC:31397, HGNC:3349, HGNC:4170, HGNC:4702, HGNC:607, HGNC:6251, HGNC:6342, HGNC:6345, HGNC:7553, HGNC:9666 DOI:10.1371/journal.pone.0162209 Bone-Marrow +UBERON:0002371 Bone marrow Bone marrow CL:0000764 erythroid lineage cell mid erythroid HGNC:10006, HGNC:10008, HGNC:11272, HGNC:11763, HGNC:1663, HGNC:1663, HGNC:21256, HGNC:3349, HGNC:4702, HGNC:6342, HGNC:6345, HGNC:9666 Bone-Marrow +UBERON:0000397 colonic epithelium lymphcyte CL:0000793 CD4-positive, alpha-beta intraepithelial T cell surface intraepithelial CD4+ lymphocyte HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1678, HGNC:1678, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695, HGNC:1695 DOI:10.1093/intimm/7.9.1473|PMID:7495755 Large_intestine +UBERON:0000397 colonic epithelium lymphcyte CL:0000793 CD4-positive, alpha-beta intraepithelial T cell surface intraepithelial CD4+ lymphocyte HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1678, HGNC:1678, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695, HGNC:1695 DOI:10.1093/intimm/7.9.1473|PMID:7495755 multi_loc +UBERON:0000397 colonic epithelium epithelium CL:0000793 CD4-positive, alpha-beta intraepithelial T cell surface intraepithelial CD4+ lymphocyte HGNC:1639, HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1678, HGNC:1678, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695 DOI:10.1093/intimm/7.9.1473|PMID:7495755 multi_loc +UBERON:0000397 colonic epithelium epithelium CL:0000793 CD4-positive, alpha-beta intraepithelial T cell surface intraepithelial CD4+ lymphocyte HGNC:1639, HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1678, HGNC:1678, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695 DOI:10.1093/intimm/7.9.1473|PMID:7495755 Large_intestine +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0000815 regulatory T cell T Regulatory Cell HGNC:1608, HGNC:1674, HGNC:1678, HGNC:6008, HGNC:6008, HGNC:6024, HGNC:6106, HGNC:6106, HGNC:9666 DOI:10.1016/j.immuni.2012.09.020|DOI:10.1007/s00262-015-1729-x|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0000815 regulatory T cell T Regulatory Cell HGNC:1608, HGNC:6008, HGNC:6106 DOI:10.1016/j.immuni.2012.09.020|DOI:10.1007/s00262-015-1729-x|DOI:10.1186/s13059-019-1906-x Spleen +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0000815 regulatory T cell T Regulatory Cell HGNC:1608, HGNC:1674, HGNC:1678, HGNC:6008, HGNC:6008, HGNC:6024, HGNC:6106, HGNC:6106, HGNC:9666 DOI:10.1016/j.immuni.2012.09.020|DOI:10.1007/s00262-015-1729-x|DOI:10.1186/s13059-019-1906-x multi_loc +UBERON:0001960 periarterial lymphatic sheath Periarteriolar Lymphoid Sheath (PALS) CL:0000815 regulatory T cell T Regulatory Cell HGNC:1608, HGNC:6008, HGNC:6106 DOI:10.1016/j.immuni.2012.09.020|DOI:10.1007/s00262-015-1729-x|DOI:10.1186/s13059-019-1906-x multi_loc +UBERON:0001961 mucosa-associated lymphoid tissue subcutaneous skin-associated lymphoid tissue CL:0000815 regulatory T cell T reg HGNC:1633, HGNC:1633, HGNC:1698, HGNC:1698 NoDOI Large_intestine +UBERON:0001961 mucosa-associated lymphoid tissue dermal skin-associated lymphoid tissue CL:0000815 regulatory T cell T reg HGNC:1673, HGNC:1673, HGNC:1678, HGNC:1678, HGNC:6106, HGNC:6106 NoDOI Large_intestine +UBERON:0001961 mucosa-associated lymphoid tissue subcutaneous skin-associated lymphoid tissue CL:0000815 regulatory T cell T reg HGNC:1633, HGNC:1633, HGNC:1698, HGNC:1698 NoDOI multi_loc +UBERON:0001961 mucosa-associated lymphoid tissue dermal skin-associated lymphoid tissue CL:0000815 regulatory T cell T reg HGNC:1673, HGNC:1673, HGNC:1678, HGNC:1678, HGNC:6106, HGNC:6106 NoDOI multi_loc +UBERON:0002371 Bone marrow Bone marrow CL:0000897 CD4-positive, alpha-beta memory T cell CD4 T cell memory HGNC:12029, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:2360, HGNC:26974, HGNC:4054, HGNC:537, HGNC:6563, HGNC:9666 Bone-Marrow +UBERON:0002371 Bone marrow Bone marrow CL:0000897 CD4-positive, alpha-beta memory T cell CD4 T cell memory HGNC:11362, HGNC:11892, HGNC:12029, HGNC:12729, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:19129, HGNC:19383, HGNC:6001, HGNC:6015, HGNC:6817, HGNC:7849, HGNC:8109, HGNC:9666, HGNC:9721 Bone-Marrow +UBERON:0000178 Blood Blood CL:0000897 CD4-positive, alpha-beta memory T cell CD4 T cell memory HGNC:11362, HGNC:11892, HGNC:12029, HGNC:12729, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:19129, HGNC:19383, HGNC:6001, HGNC:6015, HGNC:6817, HGNC:7849, HGNC:8109, HGNC:9666, HGNC:9721 multi_loc +UBERON:0000178 Blood Blood CL:0000897 CD4-positive, alpha-beta memory T cell CD4 T cell memory HGNC:12029, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:2360, HGNC:26974, HGNC:4054, HGNC:537, HGNC:6563, HGNC:9666 multi_loc +UBERON:0000178 Blood Blood CL:0000897 CD4-positive, alpha-beta memory T cell CD4 T cell memory HGNC:1608, HGNC:16647, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:2360, HGNC:26974, HGNC:4709, HGNC:6134, HGNC:9360, HGNC:9666 multi_loc +UBERON:0000178 Blood Blood CL:0000897 CD4-positive, alpha-beta memory T cell CD4 T cell memory HGNC:12029, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:2360, HGNC:26974, HGNC:4054, HGNC:537, HGNC:6563, HGNC:9666 Blood +UBERON:0000178 Blood Blood CL:0000897 CD4-positive, alpha-beta memory T cell CD4 T cell memory HGNC:11362, HGNC:11892, HGNC:12029, HGNC:12729, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:19129, HGNC:19383, HGNC:6001, HGNC:6015, HGNC:6817, HGNC:7849, HGNC:8109, HGNC:9666, HGNC:9721 Blood +UBERON:0000178 Blood Blood CL:0000897 CD4-positive, alpha-beta memory T cell CD4 T cell memory HGNC:1608, HGNC:16647, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:2360, HGNC:26974, HGNC:4709, HGNC:6134, HGNC:9360, HGNC:9666 Blood +UBERON:0002371 Bone marrow Bone marrow CL:0000897 CD4-positive, alpha-beta memory T cell CD4 T cell memory HGNC:11362, HGNC:11892, HGNC:12029, HGNC:12729, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:19129, HGNC:19383, HGNC:6001, HGNC:6015, HGNC:6817, HGNC:7849, HGNC:8109, HGNC:9666, HGNC:9721 multi_loc +UBERON:0002371 Bone marrow Bone marrow CL:0000897 CD4-positive, alpha-beta memory T cell CD4 T cell memory HGNC:12029, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:2360, HGNC:26974, HGNC:4054, HGNC:537, HGNC:6563, HGNC:9666 multi_loc +UBERON:0001961 mucosa-associated lymphoid tissue dermal skin-associated lymphoid tissue CL:0000910 cytotoxic T cell T killer HGNC:1673, HGNC:1673, HGNC:1706, HGNC:1706 NoDOI multi_loc +UBERON:0001961 mucosa-associated lymphoid tissue dermal skin-associated lymphoid tissue CL:0000910 cytotoxic T cell T killer HGNC:1673, HGNC:1673, HGNC:1706, HGNC:1706 NoDOI Large_intestine +UBERON:0001961 mucosa-associated lymphoid tissue subcutaneous skin-associated lymphoid tissue CL:0000910 cytotoxic T cell T killer HGNC:1673, HGNC:1673, HGNC:1678, HGNC:1678, HGNC:6106, HGNC:6106 NoDOI multi_loc +UBERON:0001961 mucosa-associated lymphoid tissue subcutaneous skin-associated lymphoid tissue CL:0000910 cytotoxic T cell T killer HGNC:1673, HGNC:1673, HGNC:1678, HGNC:1678, HGNC:6106, HGNC:6106 NoDOI Large_intestine +UBERON:0000397 colonic epithelium lymphocyte CL:0000935 CD4-negative, CD8-negative, alpha-beta intraepithelial T cell surface intraepithelial CD4-CD8- lymphocyte alpha/beta HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695, HGNC:1695 DOI:10.1093/intimm/7.9.1473|PMID:7495755 multi_loc +UBERON:0000397 colonic epithelium epithelium CL:0000935 CD4-negative, CD8-negative, alpha-beta intraepithelial T cell surface intraepithelial CD4-CD8- lymphocyte alpha/beta HGNC:1639, HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:921 DOI:10.1093/intimm/7.9.1473|PMID:7495755 multi_loc +UBERON:0000397 colonic epithelium lymphocyte CL:0000935 CD4-negative, CD8-negative, alpha-beta intraepithelial T cell surface intraepithelial CD4-CD8- lymphocyte alpha/beta HGNC:1639, HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695 DOI:10.1093/intimm/7.9.1473|PMID:7495755 multi_loc +UBERON:0000397 colonic epithelium epithelium CL:0000935 CD4-negative, CD8-negative, alpha-beta intraepithelial T cell surface intraepithelial CD4-CD8- lymphocyte alpha/beta HGNC:1639, HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:921 DOI:10.1093/intimm/7.9.1473|PMID:7495755 Large_intestine +UBERON:0000397 colonic epithelium lymphocyte CL:0000935 CD4-negative, CD8-negative, alpha-beta intraepithelial T cell surface intraepithelial CD4-CD8- lymphocyte alpha/beta HGNC:1639, HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695 DOI:10.1093/intimm/7.9.1473|PMID:7495755 Large_intestine +UBERON:0000397 colonic epithelium lymphocyte CL:0000935 CD4-negative, CD8-negative, alpha-beta intraepithelial T cell surface intraepithelial CD4-CD8- lymphocyte alpha/beta HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695, HGNC:1695 DOI:10.1093/intimm/7.9.1473|PMID:7495755 Large_intestine +UBERON:0002371 Bone marrow Bone marrow CL:0000990 conventional dendritic cell dendritic cell type 2 HGNC:11784, HGNC:1628, HGNC:1633, HGNC:1636, HGNC:1636, HGNC:1674, HGNC:16916, HGNC:3609, HGNC:3618, HGNC:3619, HGNC:4940, HGNC:4943, HGNC:6012, HGNC:6152, HGNC:7656 DOI:10.1016/j.immuni.2017.04.019 multi_loc +UBERON:0002371 Bone marrow Bone marrow CL:0000990 conventional dendritic cell dendritic cell type 2 HGNC:11784, HGNC:1628, HGNC:1633, HGNC:1636, HGNC:1636, HGNC:1674, HGNC:16916, HGNC:3609, HGNC:3618, HGNC:3619, HGNC:4940, HGNC:4943, HGNC:6012, HGNC:6152, HGNC:7656 DOI:10.1016/j.immuni.2017.04.019 Bone-Marrow +UBERON:0002371 Bone marrow Bone marrow CL:0000990 conventional dendritic cell dendritic cell type 1 HGNC:11784, HGNC:1625, HGNC:1628, HGNC:1633, HGNC:1636, HGNC:1674, HGNC:26705, HGNC:3619, HGNC:5951, HGNC:6012, HGNC:6152, HGNC:7656 DOI:10.3109/10428194.2013.781167 Bone-Marrow +UBERON:0002371 Bone marrow Bone marrow CL:0000990 conventional dendritic cell dendritic cell type 1 HGNC:11784, HGNC:1625, HGNC:1628, HGNC:1633, HGNC:1636, HGNC:1674, HGNC:26705, HGNC:3619, HGNC:5951, HGNC:6012, HGNC:6152, HGNC:7656 DOI:10.3109/10428194.2013.781167 multi_loc +UBERON:0010397 efferent lymphatic vessel Efferent Lymphatics CL:0002138 endothelial cell of lymphatic vessel Lymphatic Endothelial Cell HGNC:11924, HGNC:14687, HGNC:1527, HGNC:1527, HGNC:1611, HGNC:1611, HGNC:29602, HGNC:6895, HGNC:7035, HGNC:8021, HGNC:8021, HGNC:8051, HGNC:8514, HGNC:8823, HGNC:9459, HGNC:9666 DOI:10.3389/fcvm.2020.00052|DOI:10.1016/j.immuni.2019.06.027|XiangM,GrossoRA,TakedaA,PanJ,BekkhusT,BruloisK,DermadiD,NordlingS,VanlandewijckM,JalkanenS,UlvmarMH,ButcherEC|ASingle-CellTranscriptionalRoadmapoftheMouseandHumanLymphNodeLymphaticVasculature|FrontCardiovascMed|2020Apr30;7:52|doi:10|3389/fcvm|2020|00052|PMID:32426372;PMCID:PMC7204639||TakedaA,HollménM,DermadiD,PanJ,BruloisKF,KaukonenR,LönnbergT,BoströmP,KoskivuoI,IrjalaH,MiyasakaM,SalmiM,ButcherEC,JalkanenS|Single-CellSurveyofHumanLymphaticsUnveilsMarkedEndothelialCellHeterogeneityandMechanismsofHomingforNeutrophils|Immunity|2019Sep17;513:561-572|e5|doi:10|1016/j|immuni|2019|06|027|Epub2019Aug8|PMID:31402260| multi_loc +UBERON:0001473 lymphatic vessel Lymphatic Vessels CL:0002138 endothelial cell of lymphatic vessel Endothelial Cell of Lymphatic Vessel HGNC:11924, HGNC:14687, HGNC:1527, HGNC:1527, HGNC:1611, HGNC:1611, HGNC:29602, HGNC:6895, HGNC:7035, HGNC:8021, HGNC:8021, HGNC:8051, HGNC:8514, HGNC:8823, HGNC:9459, HGNC:9666 DOI:10.3389/fcvm.2020.00052|DOI:10.1016/j.immuni.2019.06.027|XiangM,GrossoRA,TakedaA,PanJ,BekkhusT,BruloisK,DermadiD,NordlingS,VanlandewijckM,JalkanenS,UlvmarMH,ButcherEC|ASingle-CellTranscriptionalRoadmapoftheMouseandHumanLymphNodeLymphaticVasculature|FrontCardiovascMed|2020Apr30;7:52|doi:10|3389/fcvm|2020|00052|PMID:32426372;PMCID:PMC7204639||TakedaA,HollménM,DermadiD,PanJ,BruloisKF,KaukonenR,LönnbergT,BoströmP,KoskivuoI,IrjalaH,MiyasakaM,SalmiM,ButcherEC,JalkanenS|Single-CellSurveyofHumanLymphaticsUnveilsMarkedEndothelialCellHeterogeneityandMechanismsofHomingforNeutrophils|Immunity|2019Sep17;513:561-572|e5|doi:10|1016/j|immuni|2019|06|027|Epub2019Aug8|PMID:31402260| multi_loc +UBERON:0010397 efferent lymphatic vessel efferent lymphatic CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelial cell HGNC:10620, HGNC:10690, HGNC:11757, HGNC:11760, HGNC:14687, HGNC:29612, HGNC:29990, HGNC:3560, HGNC:7178, HGNC:8038, HGNC:9459, HGNC:9459 DOI:10.1126/science.aay3224|DOI:10.1080/01926230600865549|PearseG|Normalstructure,functionandhistologyofthethymus|ToxicolPathol|2006;34(5):504-14|doi:10|1080/01926230600865549|PMID:17067941| multi_loc +UBERON:0001473 lymphatic vessel Lymphatic Vessels CL:0002138 endothelial cell of lymphatic vessel Lymphatic Endothelium Cell HGNC:12726, HGNC:14687, HGNC:29602, HGNC:29602, HGNC:8823, HGNC:9459 DOI:10.1369/jhc.4A6514.2005|NoDOI|GarrafaE,TraininiL,BenettiA,SabaE,FezzardiL,LorussoB,BorghettiP,BottioT,CeriE,PortolaniN,BonardlliS,GiuliniSM,AnnibaleG,CorradiA,ImbertiL,CarusoA|Isolation,purification,andheterogeneityofhumanlymphaticendothelialcellsfromdifferenttissues|Lymphology|2005Dec;38(4):159-66|PMID:16515224| multi_loc +UBERON:0001473 lymphatic vessel Lymphatic Vessels CL:0002138 endothelial cell of lymphatic vessel Lymphatic Endothelium Cell HGNC:12726, HGNC:14687, HGNC:29602, HGNC:29602, HGNC:8823, HGNC:9459 DOI:10.1369/jhc.4A6514.2005|NoDOI|GarrafaE,TraininiL,BenettiA,SabaE,FezzardiL,LorussoB,BorghettiP,BottioT,CeriE,PortolaniN,BonardlliS,GiuliniSM,AnnibaleG,CorradiA,ImbertiL,CarusoA|Isolation,purification,andheterogeneityofhumanlymphaticendothelialcellsfromdifferenttissues|Lymphology|2005Dec;38(4):159-66|PMID:16515224| Spleen +UBERON:0010397 efferent lymphatic vessel efferent lymphatic CL:0002138 endothelial cell of lymphatic vessel lymphatic endothelial cell HGNC:10620, HGNC:10690, HGNC:11757, HGNC:11760, HGNC:14687, HGNC:29612, HGNC:29990, HGNC:3560, HGNC:7178, HGNC:8038, HGNC:9459, HGNC:9459 DOI:10.1126/science.aay3224|DOI:10.1080/01926230600865549|PearseG|Normalstructure,functionandhistologyofthethymus|ToxicolPathol|2006;34(5):504-14|doi:10|1080/01926230600865549|PMID:17067941| Thymus +UBERON:0010397 efferent lymphatic vessel Efferent Lymphatics CL:0002138 endothelial cell of lymphatic vessel Lymphatic Endothelial Cell HGNC:11924, HGNC:14687, HGNC:1527, HGNC:1527, HGNC:1611, HGNC:1611, HGNC:29602, HGNC:6895, HGNC:7035, HGNC:8021, HGNC:8021, HGNC:8051, HGNC:8514, HGNC:8823, HGNC:9459, HGNC:9666 DOI:10.3389/fcvm.2020.00052|DOI:10.1016/j.immuni.2019.06.027|XiangM,GrossoRA,TakedaA,PanJ,BekkhusT,BruloisK,DermadiD,NordlingS,VanlandewijckM,JalkanenS,UlvmarMH,ButcherEC|ASingle-CellTranscriptionalRoadmapoftheMouseandHumanLymphNodeLymphaticVasculature|FrontCardiovascMed|2020Apr30;7:52|doi:10|3389/fcvm|2020|00052|PMID:32426372;PMCID:PMC7204639||TakedaA,HollménM,DermadiD,PanJ,BruloisKF,KaukonenR,LönnbergT,BoströmP,KoskivuoI,IrjalaH,MiyasakaM,SalmiM,ButcherEC,JalkanenS|Single-CellSurveyofHumanLymphaticsUnveilsMarkedEndothelialCellHeterogeneityandMechanismsofHomingforNeutrophils|Immunity|2019Sep17;513:561-572|e5|doi:10|1016/j|immuni|2019|06|027|Epub2019Aug8|PMID:31402260| Lymph_node +UBERON:0001473 lymphatic vessel Lymphatic Vessels CL:0002138 endothelial cell of lymphatic vessel Endothelial Cell of Lymphatic Vessel HGNC:11924, HGNC:14687, HGNC:1527, HGNC:1527, HGNC:1611, HGNC:1611, HGNC:29602, HGNC:6895, HGNC:7035, HGNC:8021, HGNC:8021, HGNC:8051, HGNC:8514, HGNC:8823, HGNC:9459, HGNC:9666 DOI:10.3389/fcvm.2020.00052|DOI:10.1016/j.immuni.2019.06.027|XiangM,GrossoRA,TakedaA,PanJ,BekkhusT,BruloisK,DermadiD,NordlingS,VanlandewijckM,JalkanenS,UlvmarMH,ButcherEC|ASingle-CellTranscriptionalRoadmapoftheMouseandHumanLymphNodeLymphaticVasculature|FrontCardiovascMed|2020Apr30;7:52|doi:10|3389/fcvm|2020|00052|PMID:32426372;PMCID:PMC7204639||TakedaA,HollménM,DermadiD,PanJ,BruloisKF,KaukonenR,LönnbergT,BoströmP,KoskivuoI,IrjalaH,MiyasakaM,SalmiM,ButcherEC,JalkanenS|Single-CellSurveyofHumanLymphaticsUnveilsMarkedEndothelialCellHeterogeneityandMechanismsofHomingforNeutrophils|Immunity|2019Sep17;513:561-572|e5|doi:10|1016/j|immuni|2019|06|027|Epub2019Aug8|PMID:31402260| Lymph_node +UBERON:0001282 intralobular bile duct Canals of Hering CL:0002196 Hepatic oval stem cell hepatic oval cell HGNC:11801, HGNC:6342 |DOI:10.1136/gut.2007.143321|DOI:10.1053/gast.2001.21175 multi_loc +UBERON:0001282 intralobular bile duct Canals of Hering CL:0002196 Hepatic oval stem cell hepatic progenitor cell HGNC:11204, HGNC:11529, HGNC:4504, HGNC:8148, HGNC:9454 DOI:10.1038/nature11826|DOI:10.1634/stemcells.2007-0176|DOI:10.1038/ng.722|DOI:10.1053/j.gastro.2012.08.024 multi_loc +UBERON:0001282 intralobular bile duct Canals of Hering CL:0002196 Hepatic oval stem cell hepatic oval cell HGNC:11801, HGNC:6342 |DOI:10.1136/gut.2007.143321|DOI:10.1053/gast.2001.21175 Liver +UBERON:0001282 intralobular bile duct Canals of Hering CL:0002196 Hepatic oval stem cell hepatic progenitor cell HGNC:11204, HGNC:11529, HGNC:4504, HGNC:8148, HGNC:9454 DOI:10.1038/nature11826|DOI:10.1634/stemcells.2007-0176|DOI:10.1038/ng.722|DOI:10.1053/j.gastro.2012.08.024 Liver +UBERON:0000178 Blood Blood CL:0002399 CD1c-positive myeloid dendritic cell dendritic cell type 3 (DC3) HGNC:10498, HGNC:10499, HGNC:11784, HGNC:1628, HGNC:1631, HGNC:1633, HGNC:1636, HGNC:1636, HGNC:1663, HGNC:1674, HGNC:16916, HGNC:3609, HGNC:3619, HGNC:4947, HGNC:6012, HGNC:6152, HGNC:7656 DOI:10.1002/cyto.a.23724 multi_loc +UBERON:0000178 Blood Blood CL:0002399 CD1c-positive myeloid dendritic cell dendritic cell type 2 (DC2) HGNC:11784, HGNC:1628, HGNC:1633, HGNC:1636, HGNC:1636, HGNC:1674, HGNC:16916, HGNC:3609, HGNC:3618, HGNC:3619, HGNC:4940, HGNC:4943, HGNC:4947, HGNC:6012, HGNC:6152, HGNC:7656 DOI:10.1016/j.immuni.2017.04.019 multi_loc +UBERON:0000178 Blood Blood CL:0002399 CD1c-positive myeloid dendritic cell dendritic cell type 3 (DC3) HGNC:10498, HGNC:10499, HGNC:11784, HGNC:1628, HGNC:1631, HGNC:1633, HGNC:1636, HGNC:1636, HGNC:1663, HGNC:1674, HGNC:16916, HGNC:3609, HGNC:3619, HGNC:4947, HGNC:6012, HGNC:6152, HGNC:7656 DOI:10.1002/cyto.a.23724 Blood +UBERON:0000178 Blood Blood CL:0002399 CD1c-positive myeloid dendritic cell dendritic cell type 2 (DC2) HGNC:11784, HGNC:1628, HGNC:1633, HGNC:1636, HGNC:1636, HGNC:1674, HGNC:16916, HGNC:3609, HGNC:3618, HGNC:3619, HGNC:4940, HGNC:4943, HGNC:4947, HGNC:6012, HGNC:6152, HGNC:7656 DOI:10.1016/j.immuni.2017.04.019 Blood +UBERON:0018234 stroma of pancreas Stroma of pancreas CL:0002410 pancreatic stellate cell Pancreatic stellate cell HGNC:130, HGNC:5129, HGNC:5130, HGNC:6482 multi_loc +UBERON:0018234 stroma of pancreas Stroma of pancreas CL:0002410 pancreatic stellate cell Pancreatic stellate cell HGNC:8804 multi_loc +UBERON:0018234 stroma of pancreas Stroma of pancreas CL:0002410 pancreatic stellate cell Pancreatic stellate cell HGNC:130, HGNC:5129, HGNC:5130, HGNC:6482 Pancreas +UBERON:0018234 stroma of pancreas Stroma of pancreas CL:0002410 pancreatic stellate cell Pancreatic stellate cell HGNC:8804 Pancreas +UBERON:0000955 brain brain CL:0002453 oligodendrocyte precursor cell oligodendrocyte precursor cell HGNC:51662 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0002453 oligodendrocyte precursor cell oligodendrocyte precursor cell HGNC:26287 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0002453 oligodendrocyte precursor cell oligodendrocyte precursor cell HGNC:16983, HGNC:612 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0002453 oligodendrocyte precursor cell oligodendrocyte precursor cell HGNC:26287 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0002453 oligodendrocyte precursor cell oligodendrocyte precursor cell HGNC:16983 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:0002453 oligodendrocyte precursor cell oligodendrocyte precursor cell HGNC:16983, HGNC:612 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0002453 oligodendrocyte precursor cell oligodendrocyte precursor cell HGNC:16983 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:0002453 oligodendrocyte precursor cell oligodendrocyte precursor cell HGNC:51662 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0012239 urinary bladder vasculature urinary bladder vasculature CL:0002597 smooth muscle cell of bladder smooth muscle HGNC:281, HGNC:45169, HGNC:6934 multi_loc +UBERON:0012239 urinary bladder vasculature urinary bladder vasculature CL:0002597 smooth muscle cell of bladder smooth muscle HGNC:1663, HGNC:45169, HGNC:895 multi_loc +UBERON:0012239 urinary bladder vasculature urinary bladder vasculature CL:0002597 smooth muscle cell of bladder smooth muscle HGNC:281, HGNC:45169, HGNC:6934 Urinary_bladder +UBERON:0012239 urinary bladder vasculature urinary bladder vasculature CL:0002597 smooth muscle cell of bladder smooth muscle HGNC:1663, HGNC:45169, HGNC:895 Urinary_bladder +UBERON:0000956 cerebral cortex cerebral cortex CL:0002605 astrocyte of the cerebral cortex astrocyte of the cerebral cortex HGNC:3690, HGNC:43436, HGNC:5362 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:0002605 astrocyte of the cerebral cortex astrocyte of the cerebral cortex HGNC:14864, HGNC:52515 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:0002605 astrocyte of the cerebral cortex astrocyte of the cerebral cortex HGNC:14864, HGNC:52515 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:0002605 astrocyte of the cerebral cortex astrocyte of the cerebral cortex HGNC:3690, HGNC:43436, HGNC:5362 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/Isolated lymphoid follicles (ILF) CL:0009018 macrophage CD8+ T cell HGNC:1639, HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695, HGNC:1706, HGNC:1706 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 Large_intestine +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/Isolated lymphoid follicles (ILF) CL:0009018 macrophage CD8+ T cell HGNC:1639, HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695, HGNC:1706, HGNC:1706 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 multi_loc +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/Isolated lymphoid follicles (ILF) CL:0009018 lymphocyte of large intestine lamina propria NK cell HGNC:1695, HGNC:18788, HGNC:18788, HGNC:6152, HGNC:6152, HGNC:7656, HGNC:7656, HGNC:921 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 multi_loc +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/Isolated lymphoid follicles (ILF) CL:0009018 lymphocyte of large intestine lamina propria regulatory CD4+ T cell HGNC:1678, HGNC:1678, HGNC:6008, HGNC:6008, HGNC:6106, HGNC:6106 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 multi_loc +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/Isolated lymphoid follicles (ILF) CL:0009018 lymphocyte of large intestine lamina propria B cell HGNC:1633, HGNC:1633, HGNC:1698, HGNC:1698, HGNC:2336, HGNC:2336, HGNC:7315, HGNC:7315 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 Large_intestine +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/Isolated lymphoid follicles (ILF) CL:0009018 lymphocyte of large intestine lamina propria B cell HGNC:1633, HGNC:1633, HGNC:1698, HGNC:1698, HGNC:2336, HGNC:2336, HGNC:7315, HGNC:7315 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 multi_loc +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/Isolated lymphoid follicles (ILF) CL:0009018 lymphocyte of large intestine lamina propria CD4+ T cell HGNC:1639, HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1678, HGNC:1678, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 multi_loc +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/lamina propria CL:0009018 lymphocyte of large intestine lamina propria innate lymphoid cell HGNC:6024, HGNC:6024, HGNC:6342, HGNC:6342, HGNC:6373, HGNC:6373 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 multi_loc +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/Isolated lymphoid follicles (ILF) CL:0009018 lymphocyte of large intestine lamina propria CD4+ T cell HGNC:1639, HGNC:1639, HGNC:1676, HGNC:1676, HGNC:1678, HGNC:1678, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 multi_loc +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/lamina propria CL:0009018 lymphocyte of large intestine lamina propria NK cell HGNC:18788, HGNC:18788, HGNC:6152, HGNC:6152, HGNC:7656, HGNC:7656, HGNC:921, HGNC:921 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 multi_loc +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/Isolated lymphoid follicles (ILF) CL:0009018 lymphocyte of large intestine lamina propria CD4+ T cell HGNC:1639, HGNC:1639, HGNC:1676, HGNC:1676, HGNC:1678, HGNC:1678, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 Large_intestine +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/lamina propria CL:0009018 lymphocyte of large intestine lamina propria NK cell HGNC:18788, HGNC:18788, HGNC:6152, HGNC:6152, HGNC:7656, HGNC:7656, HGNC:921, HGNC:921 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 Large_intestine +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/Isolated lymphoid follicles (ILF) CL:0009018 lymphocyte of large intestine lamina propria regulatory CD4+ T cell HGNC:1678, HGNC:1678, HGNC:6008, HGNC:6008, HGNC:6106, HGNC:6106 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 Large_intestine +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/Isolated lymphoid follicles (ILF) CL:0009018 lymphocyte of large intestine lamina propria NK cell HGNC:1695, HGNC:18788, HGNC:18788, HGNC:6152, HGNC:6152, HGNC:7656, HGNC:7656, HGNC:921 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 Large_intestine +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/lamina propria CL:0009018 lymphocyte of large intestine lamina propria innate lymphoid cell HGNC:6024, HGNC:6024, HGNC:6342, HGNC:6342, HGNC:6373, HGNC:6373 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 Large_intestine +UBERON:0001962 gut-associated lymphoid tissue gut associated lymphoid tissue (GALT)/Isolated lymphoid follicles (ILF) CL:0009018 lymphocyte of large intestine lamina propria CD4+ T cell HGNC:1639, HGNC:1639, HGNC:1673, HGNC:1673, HGNC:1676, HGNC:1676, HGNC:1678, HGNC:1678, HGNC:1685, HGNC:1685, HGNC:1695, HGNC:1695 DOI:10.1016/j.immuni.2020.02.001|PMID:32160523PMCID:PMC7155934 Large_intestine +UBERON:0000956 cerebral cortex cerebral cortex CL:0010012 cerebral cortex neuron cerebral cortex neuron HGNC:26563 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:0010012 cerebral cortex neuron cerebral cortex neuron HGNC:1183, HGNC:12338, HGNC:13010 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:0010012 cerebral cortex neuron cerebral cortex neuron HGNC:2705, HGNC:48603 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:0010012 cerebral cortex neuron cerebral cortex neuron HGNC:13542, HGNC:3446, HGNC:8569 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:0010012 cerebral cortex neuron cerebral cortex neuron HGNC:54272 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:0010012 cerebral cortex neuron cerebral cortex neuron HGNC:10259, HGNC:1686, HGNC:3488 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:0010012 cerebral cortex neuron cerebral cortex neuron HGNC:13542, HGNC:3446, HGNC:8569 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:0010012 cerebral cortex neuron cerebral cortex neuron HGNC:10259, HGNC:1686, HGNC:3488 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:0010012 cerebral cortex neuron cerebral cortex neuron HGNC:53175, HGNC:53225 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:0010012 cerebral cortex neuron cerebral cortex neuron HGNC:54272 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000956 cerebral cortex cerebral cortex CL:0010012 cerebral cortex neuron cerebral cortex neuron HGNC:53175, HGNC:53225 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:0010012 cerebral cortex neuron cerebral cortex neuron HGNC:1183, HGNC:12338, HGNC:13010 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:0010012 cerebral cortex neuron cerebral cortex neuron HGNC:2705, HGNC:48603 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:0010012 cerebral cortex neuron cerebral cortex neuron HGNC:26563 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002444 lens Fiber lens Fiber CL:0011004 lens fiber cell lens fiber cell HGNC:12692 DOI:10.1167/iovs.15-18117 Eye +UBERON:0002444 lens Fiber lens Fiber CL:0011004 lens fiber cell lens fiber cell HGNC:12692 DOI:10.1167/iovs.15-18117 multi_loc +UBERON:0002444 lens fiber lens Fibers CL:0011004 lens fiber cell lens fiber cell HGNC:7103 multi_loc +UBERON:0002444 lens fiber lens Fibers CL:0011004 lens fiber cell lens fiber cell HGNC:7103 Eye +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0012000 astrocyte of the forebrain astrocyte of the forebrain HGNC:3690, HGNC:42700, HGNC:43960, HGNC:5318 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0012000 astrocyte of the forebrain astrocyte of the forebrain HGNC:18081, HGNC:18374, HGNC:3690 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0012000 astrocyte of the forebrain astrocyte of the forebrain HGNC:14404, HGNC:27725, HGNC:42700, HGNC:4319 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0012000 astrocyte of the forebrain astrocyte of the forebrain HGNC:14404, HGNC:27725, HGNC:42700, HGNC:4319 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0012000 astrocyte of the forebrain astrocyte of the forebrain HGNC:18081, HGNC:18374, HGNC:3690 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0012000 astrocyte of the forebrain astrocyte of the forebrain HGNC:3690, HGNC:42700, HGNC:43960, HGNC:5318 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0012001 neuron of the forebrain neuron of the forebrain HGNC:14454, HGNC:6694 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0012001 neuron of the forebrain neuron of the forebrain HGNC:51128, HGNC:52704, HGNC:54138 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0012001 neuron of the forebrain neuron of the forebrain HGNC:11191, HGNC:29426, HGNC:44222 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0012001 neuron of the forebrain neuron of the forebrain HGNC:51128, HGNC:52704, HGNC:54138 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0012001 neuron of the forebrain neuron of the forebrain HGNC:14454, HGNC:6694 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0012001 neuron of the forebrain neuron of the forebrain HGNC:11191, HGNC:29426, HGNC:44222 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0012001 neuron of the forebrain neuron of the forebrain HGNC:2705, HGNC:4565 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:0012001 neuron of the forebrain neuron of the forebrain HGNC:2705, HGNC:4565 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001253 lamina propria of ureter lamina propria of ureter CL:1000308 fibrocyte of adventitia of ureter fibroblast HGNC:1346, HGNC:2705, HGNC:3011 multi_loc +UBERON:0001253 lamina propria of ureter lamina propria of ureter CL:1000308 fibrocyte of adventitia of ureter fibroblast HGNC:21245, HGNC:2705, HGNC:29673 multi_loc +UBERON:0001253 lamina propria of ureter lamina propria of ureter CL:1000308 fibrocyte of adventitia of ureter fibroblast HGNC:21245, HGNC:2705, HGNC:29673 Ureter +UBERON:0001253 lamina propria of ureter lamina propria of ureter CL:1000308 fibrocyte of adventitia of ureter fibroblast HGNC:1346, HGNC:2705, HGNC:3011 Ureter +UBERON:0008974 apocrine gland apocrine gland CL:1000417 myoepithelial cell of sweat gland myoepithelial HGNC:130, HGNC:130 NoDOI multi_loc +UBERON:0000423 eccrine sweat gland Eccrine (sweat) glands CL:1000417 myoepithelial cell of sweat gland myoepithelial cell HGNC:10492, HGNC:30840, HGNC:6436 DOI:10.1111/exd.12773|DOI:10.1111/1523-1747.ep12277180|DOI:10.1046/j.1365-2133.1997.17651853.x|PMID:26014472|PMID:2414369|PMID:9274623 Skin +UBERON:0008974 apocrine gland Apocrine glands CL:1000417 myoepithelial cell of sweat gland myoepithelial cell HGNC:4172, HGNC:8993 |DOI:10.1083/jcb.95.2.580|DOI:10.1046/j.0022-202x.2001.00005.x|DOI:10.1097/DAD.0000000000000306|PMID:6183275|PMID:11764285|PMID:26595821 Skin +UBERON:0008974 apocrine gland apocrine gland CL:1000417 myoepithelial cell of sweat gland myoepithelial HGNC:130, HGNC:130 NoDOI Large_intestine +UBERON:0000423 eccrine sweat gland eccrine sweat gland CL:1000417 myoepithelial cell of sweat gland myoepithelial HGNC:130, HGNC:130 NoDOI Large_intestine +UBERON:0000423 eccrine sweat gland eccrine sweat gland CL:1000417 myoepithelial cell of sweat gland myoepithelial HGNC:130, HGNC:130 NoDOI multi_loc +UBERON:0000423 eccrine sweat gland Eccrine (sweat) glands CL:1000417 myoepithelial cell of sweat gland myoepithelial cell HGNC:10492, HGNC:30840, HGNC:6436 DOI:10.1111/exd.12773|DOI:10.1111/1523-1747.ep12277180|DOI:10.1046/j.1365-2133.1997.17651853.x|PMID:26014472|PMID:2414369|PMID:9274623 multi_loc +UBERON:0008974 apocrine gland Apocrine glands CL:1000417 myoepithelial cell of sweat gland myoepithelial cell HGNC:4172, HGNC:8993 |DOI:10.1083/jcb.95.2.580|DOI:10.1046/j.0022-202x.2001.00005.x|DOI:10.1097/DAD.0000000000000306|PMID:6183275|PMID:11764285|PMID:26595821 multi_loc +UBERON:0001253 lamina propria of ureter lamina propria of ureter CL:1000708 ureter adventitial cell smooth muscle HGNC:130, HGNC:1663, HGNC:895 Ureter +UBERON:0001253 lamina propria of ureter lamina propria of ureter CL:1000708 ureter adventitial cell smooth muscle HGNC:130, HGNC:281, HGNC:6934 Ureter +UBERON:0001253 lamina propria of ureter lamina propria of ureter CL:1000708 ureter adventitial cell endothelium HGNC:10718, HGNC:2047, HGNC:8823 Ureter +UBERON:0001253 lamina propria of ureter lamina propria of ureter CL:1000708 ureter adventitial cell fibroblast HGNC:11092, HGNC:20396, HGNC:613 Ureter +UBERON:0001253 lamina propria of ureter lamina propria of ureter CL:1000708 ureter adventitial cell smooth muscle HGNC:130, HGNC:1663, HGNC:895 multi_loc +UBERON:0001253 lamina propria of ureter lamina propria of ureter CL:1000708 ureter adventitial cell myofibroblast HGNC:11373, HGNC:5318, HGNC:7035 Ureter +UBERON:0001253 lamina propria of ureter lamina propria of ureter CL:1000708 ureter adventitial cell endothelium HGNC:10718, HGNC:2047, HGNC:8823 multi_loc +UBERON:0001253 lamina propria of ureter lamina propria of ureter CL:1000708 ureter adventitial cell fibroblast HGNC:11092, HGNC:20396, HGNC:613 multi_loc +UBERON:0001253 lamina propria of ureter lamina propria of ureter CL:1000708 ureter adventitial cell myofibroblast HGNC:11373, HGNC:5318, HGNC:7035 multi_loc +UBERON:0001253 lamina propria of ureter lamina propria of ureter CL:1000708 ureter adventitial cell smooth muscle HGNC:130, HGNC:281, HGNC:6934 multi_loc +UBERON:0004203 cortical collecting duct Collecting Duct (Cortex) CL:1000714 kidney cortex collecting duct principal cell Cortical Collecting Duct Principal Cell HGNC:10602, HGNC:4028, HGNC:4172, HGNC:634, HGNC:634, HGNC:636 DOI:10.1038/s41467-019-10861-2|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1172/jci.insight.133267|PMID:31249312|PMCID:PMC6597610|PMID:31689386 Kidney +UBERON:0004203 cortical collecting duct Collecting Duct (Cortex) CL:1000714 kidney cortex collecting duct principal cell Cortical Collecting Duct Principal Cell HGNC:634, HGNC:634, HGNC:636 Kidney +UBERON:0004203 cortical collecting duct Collecting Duct (Cortex) CL:1000714 kidney cortex collecting duct principal cell Cortical Collecting Duct Principal Cell HGNC:10602, HGNC:4028, HGNC:4172, HGNC:634, HGNC:634, HGNC:636 DOI:10.1038/s41467-019-10861-2|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1172/jci.insight.133267|PMID:31249312|PMCID:PMC6597610|PMID:31689386 multi_loc +UBERON:0004203 cortical collecting duct Collecting Duct (Cortex) CL:1000714 kidney cortex collecting duct principal cell Cortical Collecting Duct Principal Cell HGNC:634, HGNC:634, HGNC:636 multi_loc +UBERON:0004203 cortical collecting duct Collecting Duct (Cortex) CL:1000715 kidney cortex collecting duct intercalated cell Cortical Collecting Duct Intercalated Cell Type A HGNC:11027, HGNC:14467, HGNC:6342, HGNC:639 DOI:10.1038/s41467-019-10861-2|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|PMID:31249312|PMCID:PMC6597610|PMID:31689386 Kidney +UBERON:0004203 cortical collecting duct Collecting Duct CL:1000715 kidney cortex collecting duct intercalated cell Cortical Collecting Duct Intercalated Cell Type B HGNC:11035, HGNC:8818 DOI:10.1038/s41467-019-10861-2|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|DOI:10.1126/science.aat1699|PMID:31249312|PMCID:PMC6597610|PMID:31689386 Kidney +UBERON:0004203 cortical collecting duct Collecting Duct (Cortex) CL:1000715 kidney cortex collecting duct intercalated cell Cortical Collecting Duct Intercalated Cell Type A HGNC:11027, HGNC:14467, HGNC:6342, HGNC:639 DOI:10.1038/s41467-019-10861-2|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|PMID:31249312|PMCID:PMC6597610|PMID:31689386 multi_loc +UBERON:0004203 cortical collecting duct Collecting Duct CL:1000715 kidney cortex collecting duct intercalated cell Cortical Collecting Duct Intercalated Cell Type B HGNC:11035, HGNC:8818 DOI:10.1038/s41467-019-10861-2|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|DOI:10.1126/science.aat1699|PMID:31249312|PMCID:PMC6597610|PMID:31689386 multi_loc +UBERON:0001291 thick ascending limb of loop of Henle Loop of Henle (Thick Limb/Medulla) CL:1001108 kidney loop of Henle medullary thick ascending limb epithelial cell Medullary Thick Ascending Limb Cell HGNC:10910, HGNC:12559, HGNC:1514 multi_loc +UBERON:0001291 thick ascending limb of loop of Henle Loop of Henle (Thick Limb/Medulla) CL:1001108 kidney loop of Henle medullary thick ascending limb epithelial cell Medullary Thick Ascending Limb Cell HGNC:10910, HGNC:12559, HGNC:12559, HGNC:1514, HGNC:1748, HGNC:1748, HGNC:799, HGNC:799, HGNC:9459, HGNC:9858 DOI:10.1038/s41467-019-10861-2|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|DOI:10.1681/ASN.2020010071|PMID:31249312|PMCID:PMC6597610|PMID:31689386 Kidney +UBERON:0001291 thick ascending limb of loop of Henle Loop of Henle (Thick Limb/Medulla) CL:1001108 kidney loop of Henle medullary thick ascending limb epithelial cell Medullary Thick Ascending Limb Cell HGNC:10910, HGNC:12559, HGNC:1514 Kidney +UBERON:0001291 thick ascending limb of loop of Henle Loop of Henle (Thick Limb/Medulla) CL:1001108 kidney loop of Henle medullary thick ascending limb epithelial cell Medullary Thick Ascending Limb Cell HGNC:10910, HGNC:12559, HGNC:12559, HGNC:1514, HGNC:1748, HGNC:1748, HGNC:799, HGNC:799, HGNC:9459, HGNC:9858 DOI:10.1038/s41467-019-10861-2|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1038/s41467-019-10861-2|DOI:10.1172/jci.insight.133267|DOI:10.1681/ASN.2020010071|PMID:31249312|PMCID:PMC6597610|PMID:31689386 multi_loc +UBERON:0009202 vasa recta descending limb Descending Vasa Recta CL:1001285 vasa recta descending limb cell Descending Vasa Recta Endothelial Cell HGNC:11853, HGNC:15846, HGNC:222, HGNC:8951 multi_loc +UBERON:0009202 vasa recta descending limb Descending Vasa Recta CL:1001285 vasa recta descending limb cell Descending Vasa Recta Endothelial Cell HGNC:11853, HGNC:15846, HGNC:222, HGNC:8951 Kidney +UBERON:0009202 vasa recta descending limb Descending Vasa Recta CL:1001285 vasa recta descending limb cell Descending Vasa Recta Endothelial Cell HGNC:11853, HGNC:12559, HGNC:15846, HGNC:222, HGNC:8951 Kidney +UBERON:0009202 vasa recta descending limb Descending Vasa Recta CL:1001285 vasa recta descending limb cell Descending Vasa Recta Endothelial Cell HGNC:11853, HGNC:12559, HGNC:15846, HGNC:222, HGNC:8951 multi_loc +UBERON:0001261 lamina propria of urinary bladder lamina propria of urinary bladder CL:1001319 bladder cell myofibroblast HGNC:11373, HGNC:5318, HGNC:7035 multi_loc +UBERON:0001261 lamina propria of urinary bladder lamina propria of urinary bladder CL:1001319 bladder cell fibroblast HGNC:21245, HGNC:2705, HGNC:29673 multi_loc +UBERON:0001261 lamina propria of urinary bladder lamina propria of urinary bladder CL:1001319 bladder cell fibroblast HGNC:1346, HGNC:2705, HGNC:3011 multi_loc +UBERON:0001261 lamina propria of urinary bladder lamina propria of urinary bladder CL:1001319 bladder cell fibroblast HGNC:11092, HGNC:20396, HGNC:613 multi_loc +UBERON:0001261 lamina propria of urinary bladder lamina propria of urinary bladder CL:1001319 bladder cell fibroblast HGNC:11092, HGNC:20396, HGNC:613 Urinary_bladder +UBERON:0001261 lamina propria of urinary bladder lamina propria of urinary bladder CL:1001319 bladder cell fibroblast HGNC:1346, HGNC:2705, HGNC:3011 Urinary_bladder +UBERON:0001261 lamina propria of urinary bladder lamina propria of urinary bladder CL:1001319 bladder cell fibroblast HGNC:21245, HGNC:2705, HGNC:29673 Urinary_bladder +UBERON:0001261 lamina propria of urinary bladder lamina propria of urinary bladder CL:1001319 bladder cell myofibroblast HGNC:11373, HGNC:5318, HGNC:7035 Urinary_bladder +UBERON:0001254 urothelium of ureter urothelium of ureter CL:1001428 ureter urothelial cell urothelium HGNC:10492, HGNC:2891, HGNC:6442 multi_loc +UBERON:0001254 urothelium of ureter urothelium of ureter CL:1001428 ureter urothelial cell urothelium HGNC:12577, HGNC:12578, HGNC:12580 multi_loc +UBERON:0001254 urothelium of ureter urothelium of ureter CL:1001428 ureter urothelial cell urothelium HGNC:15979, HGNC:384, HGNC:6415 multi_loc +UBERON:0001254 urothelium of ureter urothelium of ureter CL:1001428 ureter urothelial cell urothelium HGNC:12577, HGNC:12578, HGNC:12580 Ureter +UBERON:0004645 urinary bladder urothelium urinary bladder urothelium CL:1001428 bladder urothelial cell urothelium HGNC:12578, HGNC:12580, HGNC:40603 multi_loc +UBERON:0004645 urinary bladder urothelium urinary bladder urothelium CL:1001428 bladder urothelial cell urothelium HGNC:15979, HGNC:384, HGNC:6415 multi_loc +UBERON:0004645 urinary bladder urothelium urinary bladder urothelium CL:1001428 bladder urothelial cell urothelium HGNC:10492, HGNC:2891, HGNC:6442 multi_loc +UBERON:0001254 urothelium of ureter urothelium of ureter CL:1001428 ureter urothelial cell urothelium HGNC:15979, HGNC:384, HGNC:6415 Ureter +UBERON:0001254 urothelium of ureter urothelium of ureter CL:1001428 ureter urothelial cell urothelium HGNC:10492, HGNC:2891, HGNC:6442 Ureter +UBERON:0004645 urinary bladder urothelium urinary bladder urothelium CL:1001428 bladder urothelial cell urothelium HGNC:12578, HGNC:12580, HGNC:40603 Urinary_bladder +UBERON:0004645 urinary bladder urothelium urinary bladder urothelium CL:1001428 bladder urothelial cell urothelium HGNC:10492, HGNC:2891, HGNC:6442 Urinary_bladder +UBERON:0004645 urinary bladder urothelium urinary bladder urothelium CL:1001428 bladder urothelial cell urothelium HGNC:15979, HGNC:384, HGNC:6415 Urinary_bladder +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:11353, HGNC:3020, HGNC:49260 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002743 basal forebrain basal forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:26299, HGNC:3020, HGNC:52997 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002743 basal forebrain basal forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:52997, HGNC:54353 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:3020 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:43643, HGNC:8831 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:26299, HGNC:8831 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:32696, HGNC:8831 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:3024, HGNC:7154 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:10669, HGNC:1409, HGNC:14632, HGNC:7000, HGNC:9609 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:1001474 medium spiny neuron medium spiny neuron HGNC:4086, HGNC:6132 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:3020, HGNC:9679 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:26299, HGNC:8831 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:26002, HGNC:52997, HGNC:6483 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002743 basal forebrain basal forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:8831 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:45056, HGNC:4525, HGNC:8139 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:23729, HGNC:6132, HGNC:8569 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:11843, HGNC:15813, HGNC:19718, HGNC:26683, HGNC:37203, HGNC:4525 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:3023 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002743 basal forebrain basal forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:11517, HGNC:4243, HGNC:8831 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:11517, HGNC:16709, HGNC:4243 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:19718, HGNC:219, HGNC:3520, HGNC:5184 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:10669, HGNC:7000 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:10640, HGNC:19718, HGNC:3520, HGNC:9679 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:10725, HGNC:14632, HGNC:4525, HGNC:7000 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:1954, HGNC:19718, HGNC:29 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002743 basal forebrain basal forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:3023, HGNC:50645, HGNC:7154 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:16018, HGNC:38408, HGNC:8656 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:4525, HGNC:8620, HGNC:9446 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:4086, HGNC:8831 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:11526, HGNC:13875, HGNC:19718, HGNC:427 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:1001474 medium spiny neuron medium spiny neuron HGNC:3023, HGNC:3520, HGNC:8831 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:1001474 medium spiny neuron medium spiny neuron HGNC:10640, HGNC:13875, HGNC:6132 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:1954, HGNC:19718, HGNC:29 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:3024, HGNC:7154 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:10669, HGNC:1409, HGNC:14632, HGNC:7000, HGNC:9609 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:23729, HGNC:6132, HGNC:8569 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:19718, HGNC:219, HGNC:3520, HGNC:5184 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:10669, HGNC:7000 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:1001474 medium spiny neuron medium spiny neuron HGNC:4086, HGNC:6132 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:4086, HGNC:8831 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:4525, HGNC:8620, HGNC:9446 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:16018, HGNC:38408, HGNC:8656 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002743 basal forebrain basal forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:26299, HGNC:3020, HGNC:52997 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:11843, HGNC:15813, HGNC:19718, HGNC:26683, HGNC:37203, HGNC:4525 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:10725, HGNC:14632, HGNC:4525, HGNC:7000 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:45056, HGNC:4525, HGNC:8139 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:10640, HGNC:19718, HGNC:3520, HGNC:9679 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:32696, HGNC:8831 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:11526, HGNC:13875, HGNC:19718, HGNC:427 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:11517, HGNC:16709, HGNC:4243 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002743 basal forebrain basal forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:11517, HGNC:4243, HGNC:8831 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:3023 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002743 basal forebrain basal forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:52997, HGNC:54353 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:1001474 medium spiny neuron medium spiny neuron HGNC:10640, HGNC:13875, HGNC:6132 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:3020, HGNC:9679 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002743 basal forebrain basal forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:3023, HGNC:50645, HGNC:7154 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:43643, HGNC:8831 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:11353, HGNC:3020, HGNC:49260 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:3020 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:1001474 medium spiny neuron medium spiny neuron HGNC:3023, HGNC:3520, HGNC:8831 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:1001474 medium spiny neuron eccentric medium spiny neuron HGNC:26002, HGNC:52997, HGNC:6483 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002743 basal forebrain basal forebrain CL:1001474 medium spiny neuron medium spiny neuron HGNC:8831 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001250 red pulp of spleen Red Pulp CL:2000053 splenic endothelial cell Splenic endothelial cell HGNC:11784, HGNC:12726, HGNC:1662, HGNC:1662, HGNC:1706, HGNC:8823, HGNC:8823 DOI:10.1007/s00418-007-0320-8|DOI:10.1016/j.aanat.2019.05.004|DOI10.1182/bloodadvances.2017015073 Spleen +UBERON:0001250 red pulp of spleen Red Pulp CL:2000053 splenic endothelial cell Splenic endothelial cell HGNC:12663, HGNC:12726, HGNC:12726, HGNC:1662, HGNC:1662, HGNC:8823, HGNC:8823 DOI:10.1017/CBO9780511545979|DOI10.1182/bloodadvances.2017015073 Spleen +UBERON:0001250 red pulp of spleen Red Pulp CL:2000053 splenic endothelial cell Splenic endothelial cell HGNC:11784, HGNC:12726, HGNC:1662, HGNC:1662, HGNC:8823 DOI:10.1007/s00418-007-0320-8|DOI10.1182/bloodadvances.2017015073 Spleen +UBERON:0001250 red pulp of spleen Red Pulp CL:2000053 splenic endothelial cell Splenic endothelial cell HGNC:11784, HGNC:12726, HGNC:1662, HGNC:1662, HGNC:1706, HGNC:8823, HGNC:8823 DOI:10.1007/s00418-007-0320-8|DOI:10.1016/j.aanat.2019.05.004|DOI10.1182/bloodadvances.2017015073 multi_loc +UBERON:0001250 red pulp of spleen Red Pulp CL:2000053 splenic endothelial cell Splenic endothelial cell HGNC:12663, HGNC:12726, HGNC:12726, HGNC:1662, HGNC:1662, HGNC:8823, HGNC:8823 DOI:10.1017/CBO9780511545979|DOI10.1182/bloodadvances.2017015073 multi_loc +UBERON:0001250 red pulp of spleen Red Pulp CL:2000053 splenic endothelial cell Splenic endothelial cell HGNC:11784, HGNC:12726, HGNC:1662, HGNC:1662, HGNC:8823 DOI:10.1007/s00418-007-0320-8|DOI10.1182/bloodadvances.2017015073 multi_loc +UBERON:0019264 gray matter of forebrain gray matter 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HGNC:11051, HGNC:21184, HGNC:28867 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:4023057 cerebellar inhibitory GABAergic interneuron cerebellar inhibitory HGNC:16438, HGNC:26256 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002037 cerebellum cerebellum CL:4023057 cerebellar inhibitory GABAergic interneuron cerebellar inhibitory HGNC:28751 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:4023057 cerebellar inhibitory GABAergic interneuron cerebellar inhibitory HGNC:24330 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002037 cerebellum cerebellum CL:4023057 cerebellar inhibitory GABAergic interneuron cerebellar inhibitory HGNC:16941 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019263 gray matter of hindbrain gray matter of hindbrain CL:4023057 cerebellar inhibitory GABAergic interneuron cerebellar inhibitory HGNC:1077, HGNC:11743, HGNC:53587, HGNC:8029 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+UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:13542, HGNC:2654, HGNC:50507 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:14454, HGNC:6140 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:6140 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:27823, HGNC:8038 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:20821, HGNC:29426, HGNC:50507, HGNC:52895 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:8038 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CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:14454, HGNC:6140 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:8038 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:13542, HGNC:2654, HGNC:50507 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:20821, HGNC:29426, HGNC:50507, HGNC:52895 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:50507 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023060 hippocampal CA1-3 neuron hippocampal CA1-3 neuron HGNC:11963 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023061 hippocampal CA4 neuron hippocampal CA4 neuron HGNC:18695, HGNC:8038 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023061 hippocampal CA4 neuron hippocampal CA4 neuron HGNC:13542, HGNC:1514, HGNC:6140 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023061 hippocampal CA4 neuron hippocampal CA4 neuron HGNC:10327, HGNC:24961 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023061 hippocampal CA4 neuron hippocampal CA4 neuron HGNC:14866, HGNC:2210, HGNC:27405, HGNC:6140 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023061 hippocampal CA4 neuron hippocampal CA4 neuron HGNC:25396, HGNC:4893 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023061 hippocampal CA4 neuron hippocampal CA4 neuron HGNC:53062 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023061 hippocampal CA4 neuron hippocampal CA4 neuron HGNC:53062, HGNC:6140 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023061 hippocampal CA4 neuron hippocampal CA4 neuron HGNC:53062 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002600 limbic lobe limbic lobe CL:4023061 hippocampal CA4 neuron hippocampal CA4 neuron HGNC:14866, HGNC:16941, HGNC:25588, HGNC:45056 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002600 limbic lobe limbic lobe CL:4023061 hippocampal CA4 neuron hippocampal CA4 neuron HGNC:53062, HGNC:6140 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002600 limbic lobe limbic lobe CL:4023061 hippocampal CA4 neuron hippocampal CA4 neuron HGNC:14866, HGNC:2210, HGNC:27405, HGNC:6140 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002600 limbic lobe limbic lobe CL:4023061 hippocampal CA4 neuron hippocampal CA4 neuron HGNC:10327, HGNC:24961 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002600 limbic lobe limbic lobe CL:4023061 hippocampal CA4 neuron hippocampal 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gray matter of forebrain gray matter of forebrain CL:4023063 medial ganglionic eminence derived interneuron MGE derived interneuron HGNC:11329, HGNC:16267, HGNC:8614 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023063 medial ganglionic eminence derived interneuron MGE derived interneuron HGNC:17109, HGNC:29213, HGNC:9704 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023063 medial ganglionic eminence derived interneuron MGE derived interneuron HGNC:3604, HGNC:7955 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023063 medial ganglionic eminence derived interneuron MGE derived interneuron HGNC:1073, HGNC:16421, HGNC:24165 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023063 medial ganglionic eminence derived interneuron MGE derived interneuron HGNC:13361 DOI:10.1101/2022.10.12.511898 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HGNC:17109, HGNC:18351, HGNC:7549 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023063 medial ganglionic eminence derived interneuron MGE derived interneuron HGNC:10723, HGNC:11329, HGNC:16421, HGNC:20754, HGNC:20866 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023063 medial ganglionic eminence derived interneuron MGE derived interneuron HGNC:20391, HGNC:26270, HGNC:42435 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023063 medial ganglionic eminence derived interneuron MGE derived interneuron HGNC:11329, HGNC:52844, HGNC:6776 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023063 medial ganglionic eminence derived interneuron MGE derived interneuron HGNC:11521, HGNC:3179 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000956 cerebral cortex cerebral cortex CL:4023063 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HGNC:14872 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:11553, HGNC:130 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:10937, HGNC:42872 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:3498, HGNC:7060 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:26213, HGNC:29836 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:5993, HGNC:9361 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:3498, HGNC:7060 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:130, HGNC:3498 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:30400, HGNC:4871 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:26213, HGNC:29836 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:10937, HGNC:42872 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:11045, HGNC:11046, HGNC:14872 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:11553, HGNC:130 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:13635 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023072 brain vascular cell brain vascular cell HGNC:19194, HGNC:3498, HGNC:74 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023073 choroid plexus cell choroid plexus cell HGNC:14344, HGNC:5147 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023073 choroid plexus cell choroid plexus cell HGNC:12405, HGNC:4462 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023073 choroid plexus cell choroid plexus cell HGNC:18695, HGNC:43906, HGNC:9086 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023073 choroid plexus cell choroid plexus cell HGNC:3791, HGNC:8824 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002743 basal forebrain basal forebrain CL:4023073 choroid plexus cell choroid plexus cell HGNC:356, HGNC:9211 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002743 basal forebrain basal forebrain CL:4023073 choroid plexus cell choroid plexus cell HGNC:5196 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0002743 basal forebrain basal forebrain CL:4023073 choroid plexus cell choroid plexus cell HGNC:18083, HGNC:34, HGNC:9211 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023073 choroid plexus cell choroid plexus cell HGNC:14344, HGNC:5147 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002743 basal forebrain basal forebrain CL:4023073 choroid plexus cell choroid plexus cell HGNC:356, HGNC:9211 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023073 choroid plexus cell choroid plexus cell HGNC:12405, HGNC:4462 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002743 basal forebrain basal forebrain CL:4023073 choroid plexus cell choroid plexus cell HGNC:18083, HGNC:34, HGNC:9211 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0002743 basal forebrain basal forebrain CL:4023073 choroid plexus cell choroid plexus cell HGNC:5196 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023073 choroid plexus cell choroid plexus cell HGNC:18695, HGNC:43906, HGNC:9086 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023073 choroid plexus cell choroid plexus cell HGNC:3791, HGNC:8824 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:10882, HGNC:13604, HGNC:53062, HGNC:9446 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:10882, HGNC:28572, HGNC:7596, HGNC:8139 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:10725, HGNC:9005 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:23319, HGNC:9005 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:10882, HGNC:1663, HGNC:6714 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:11517 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:11517, HGNC:39988, HGNC:42742 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:3969, HGNC:42742 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:21591, HGNC:42742 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:28554, HGNC:42742 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:10882, HGNC:13604, HGNC:53062, HGNC:9446 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:10882, HGNC:28572, HGNC:7596, HGNC:8139 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:10725, HGNC:9005 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:23319, HGNC:9005 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:10882, HGNC:1663, HGNC:6714 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:11517 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:11517, HGNC:39988, HGNC:42742 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:3969, HGNC:42742 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:21591, HGNC:42742 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:10882, HGNC:2356, HGNC:9005 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:10882, HGNC:2356, HGNC:9005 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0001898 hypothalamus hypothalamus CL:4023074 mammillary body neuron mammillary body neuron HGNC:28554, HGNC:42742 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:15576, HGNC:43906, HGNC:52895 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:1514, HGNC:21641, HGNC:23631 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:14866, HGNC:43906, HGNC:9477, HGNC:9957 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:22128, HGNC:31110, HGNC:7941 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:20754, HGNC:23631, HGNC:44222, HGNC:6714 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:1077, HGNC:19194, HGNC:43906 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:10259, HGNC:1077, HGNC:43906 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:23631, HGNC:7941 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:25723, HGNC:43906, HGNC:53587, HGNC:7941 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:10725, HGNC:43906, HGNC:52895, HGNC:9477 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:10725, HGNC:11510, HGNC:30506, HGNC:43906, HGNC:53587 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:15576, HGNC:30506, HGNC:37078 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:10725, HGNC:11510, HGNC:30506, HGNC:43906, HGNC:53587 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:10725, HGNC:43906, HGNC:52895, HGNC:9477 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:15576, HGNC:30506, HGNC:37078 DOI:10.1101/2022.10.12.511898 Brain +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:25723, HGNC:43906, HGNC:53587, HGNC:7941 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:23631, HGNC:7941 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:10259, HGNC:1077, HGNC:43906 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:1077, HGNC:19194, HGNC:43906 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:20754, HGNC:23631, HGNC:44222, HGNC:6714 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:22128, HGNC:31110, HGNC:7941 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:14866, HGNC:43906, HGNC:9477, HGNC:9957 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0019264 gray matter of forebrain gray matter of forebrain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:1514, HGNC:21641, HGNC:23631 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0000955 brain brain CL:4023079 midbrain-derived inhibitory neuron midbrain-derived inhibitory neuron HGNC:15576, HGNC:43906, HGNC:52895 DOI:10.1101/2022.10.12.511898 multi_loc +UBERON:0001289 descending limb of loop of Henle Loop of Henle (Thin Limb) CL:4030013 kidney loop of Henle long descending thin limb outer medulla epithelial cell Descending Thin Limb Cell Type 2 HGNC:11073, HGNC:11530, HGNC:20862, HGNC:2389, HGNC:633, HGNC:633 Kidney +UBERON:0001289 descending limb of loop of Henle Loop of Henle (Thin Limb) CL:4030013 kidney loop of Henle long descending thin limb outer medulla epithelial cell Descending Thin Limb Cell Type 2 HGNC:11073, HGNC:11530, HGNC:16438, HGNC:20862, HGNC:2389, HGNC:633, HGNC:633 DOI:10.1101/2021.07.28.454201|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1038/s41467-019-10861-2|DOI:10.1681/ASN.2020010071|DOI:10.1152/ajprenal.2000.278.1.F52|PMID:31689386 Kidney +UBERON:0001289 descending limb of loop of Henle Loop of Henle (Thin Limb) CL:4030013 kidney loop of Henle long descending thin limb outer medulla epithelial cell Descending Thin Limb Cell Type 2 HGNC:11073, HGNC:11530, HGNC:16438, HGNC:20862, HGNC:2389, HGNC:633, HGNC:633 DOI:10.1101/2021.07.28.454201|DOI:10.1016/j.devcel.2019.10.005|DOI:10.1038/s41467-019-10861-2|DOI:10.1681/ASN.2020010071|DOI:10.1152/ajprenal.2000.278.1.F52|PMID:31689386 multi_loc +UBERON:0001289 descending limb of loop of Henle Loop of Henle (Thin Limb) CL:4030013 kidney loop of Henle long descending thin limb outer medulla epithelial cell Descending Thin Limb Cell Type 2 HGNC:11073, HGNC:11530, HGNC:20862, HGNC:2389, HGNC:633, HGNC:633 multi_loc +UBERON:0004849 respiratory system venous endothelium respiratory system venous endothelium CL:4033008 vein endothelial cell of respiratory system vein endothelial cell of respiratory system HGNC:12726, HGNC:16041, HGNC:19832, HGNC:2047, HGNC:30552, HGNC:35454, HGNC:4035, HGNC:4035, HGNC:7884, HGNC:7976, HGNC:8823 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 Lung +UBERON:0004849 respiratory system venous endothelium respiratory system venous endothelium CL:4033008 vein endothelial cell of respiratory system vein endothelial cell of respiratory system HGNC:13635, HGNC:19832, HGNC:2047, HGNC:35454, HGNC:4035, HGNC:7884 Lung +UBERON:0004849 respiratory system venous endothelium respiratory system venous endothelium CL:4033008 vein endothelial cell of respiratory system vein endothelial cell of respiratory system HGNC:12726, HGNC:16041, HGNC:19832, HGNC:2047, HGNC:30552, HGNC:35454, HGNC:4035, HGNC:4035, HGNC:7884, HGNC:7976, HGNC:8823 doi:10.1148/93.3.507|doi:10.1136/thx.13.2.110 multi_loc +UBERON:0004849 respiratory system venous endothelium respiratory system venous endothelium CL:4033008 vein endothelial cell of respiratory system vein endothelial cell of respiratory system HGNC:13635, HGNC:19832, HGNC:2047, HGNC:35454, HGNC:4035, HGNC:7884 multi_loc +UBERON:0004849 respiratory system venous endothelium respiratory system venous endothelium CL:4033008 vein endothelial cell of respiratory system vein endothelial cell of respiratory system HGNC:19832, HGNC:2047, HGNC:35454, HGNC:7178, HGNC:7884 multi_loc +UBERON:0004849 respiratory system venous endothelium respiratory system venous endothelium CL:4033008 vein endothelial cell of respiratory system vein endothelial cell of respiratory system HGNC:19832, HGNC:2047, HGNC:35454, HGNC:7178, HGNC:7884 Lung +UBERON:8600013 submucosal gland collecting duct submucosal gland collecting duct CL:4033024 airway submucosal gland duct basal cell airway submucosal gland duct basal cell HGNC:11529, HGNC:15979, HGNC:15979, HGNC:1748, HGNC:20657, HGNC:3318, HGNC:3800, HGNC:3800, HGNC:4027, HGNC:6416, HGNC:6416, HGNC:6442, HGNC:6442 multi_loc +UBERON:8600013 submucosal gland collecting duct submucosal gland collecting duct CL:4033024 airway submucosal gland duct basal cell airway submucosal gland duct basal cell HGNC:11529, HGNC:15979, HGNC:15979, HGNC:1748, HGNC:20657, HGNC:3318, HGNC:3800, HGNC:4027, HGNC:6416, HGNC:6416, HGNC:6442, HGNC:6442, HGNC:7809 multi_loc +UBERON:8600013 submucosal gland collecting duct submucosal gland collecting duct CL:4033024 airway submucosal gland duct basal cell airway submucosal gland duct basal cell HGNC:11529, HGNC:15979, HGNC:15979, HGNC:1748, HGNC:20657, HGNC:3318, HGNC:3800, HGNC:4027, HGNC:6416, HGNC:6416, HGNC:6442, HGNC:6442, HGNC:7809 Lung +UBERON:8600013 submucosal gland collecting duct submucosal gland collecting duct CL:4033024 airway submucosal gland duct basal cell airway submucosal gland duct basal cell HGNC:11529, HGNC:15979, HGNC:15979, HGNC:1748, HGNC:20657, HGNC:3318, HGNC:3800, HGNC:3800, HGNC:4027, HGNC:6416, HGNC:6416, HGNC:6442, HGNC:6442 Lung diff --git a/src/Makefile b/src/Makefile index 88d0c633b..3b790a3d6 100644 --- a/src/Makefile +++ b/src/Makefile @@ -3,6 +3,7 @@ ROBOT = robot # Set this to your local path (Need to switch this to take input!) # JOBS = Adipose Lingual_Tonsil Mammary_Gland Nasal_Passage Pharyngeal_Tonsil Quadriceps_Femoris Triceps_Surae don't have data in table JOBS = Blood Bone-Marrow Brain Eye Fallopian_tube Heart Kidney Knee Large_intestine Liver Lung Lymph_node Lymph_vasculature Main_Bronchus Muscular_System Ovary Pancreas Peripheral_nervous_system Placenta Prostate Skeleton Skin Small_intestine Spinal_Cord Spleen Thymus Trachea Ureter Urinary_bladder Uterus Blood_vasculature JOBS_OLD = Bone-Marrow Blood Brain Eye Fallopian_tube Heart Kidney Knee Large_intestine Liver Lung Lymph_node Lymph_vasculature Ovary Pancreas Placenta Peripheral_nervous_system Prostate Skin Small_intestine Spleen Thymus Ureter Urinary_bladder Uterus Blood_vasculature +JOBS_MARKERS = Bone-Marrow Blood Brain Eye Fallopian_tube Heart Kidney Knee Large_intestine Liver Lung Lymph_node Lymph_vasculature Ovary Pancreas Placenta Peripheral_nervous_system Prostate Skin Small_intestine Spleen Thymus Ureter Urinary_bladder Uterus OLD_VERSION = False TODAY ?= $(shell date +%Y-%m-%d) @@ -16,6 +17,7 @@ OWL_ANNOTATION_FILES = $(patsubst %, ../owl/%_annotations.owl, $(JOBS)) OWL_UB_SUBSET_FILES = $(patsubst %, ../owl/ub_%_ASCTB_subset.owl, $(JOBS)) OWL_CL_SUBSET_FILES = $(patsubst %, ../owl/cl_%_ASCTB_subset.owl, $(JOBS)) JSON_CLASSES_SUBSET = $(patsubst %, ../owl/%_ASCTB_subset.json, $(JOBS)) +CSV_CT_LOC_B = $(patsubst %, ../logs/ct_loc_markers/%_report.tsv, $(JOBS_MARKERS)) all: last_official_release official_release @@ -128,13 +130,27 @@ release_notes: rm $(OWL_CL_SUBSET_FILES); fi official_release: - make ../owl/CCF_AS_CT.owl ../owl/UB_ASCTB_subset.owl ../owl/CL_ASCTB_subset.owl -B + make ../owl/CCF_AS_CT.owl ../owl/UB_ASCTB_subset.owl ../owl/CL_ASCTB_subset.owl ../logs/ct_loc_markers/ct_loc_b_report.tsv -B .PHONY: official_release last_official_release: make ../owl/last_official_ASCTB_release/CCF_AS_CT.owl OLD_VERSION=True -B .PHONY: last_official_release +../logs/ct_loc_markers/%_report.tsv: ../resources/ASCT-b_tables/%.json + python cell_type_location.py --input $< --output $@ --mode generate +.PHONY: ../logs/ct_loc_markers/%_report.tsv + +../logs/ct_loc_markers/ct_loc_b_report.tsv: ${CSV_CT_LOC_B} + python cell_type_location.py --input $< --output $@ --mode merge +.PHONY: ../logs/ct_loc_markers/ct_loc_b_report.tsv + +generate_dosdp_template: ../logs/ct_loc_markers/ct_loc_b_report.tsv + python cell_type_location.py --input $< --output ../templates/ccf_compound.tsv --mode template + +validation_reports_release: official_release + cp -a ../logs/. ../docs + build-docker-v%: docker buildx use ccf-tools-dep-builder docker buildx build --platform linux/amd64,linux/arm64 -t anitacaron/ccf-tools-dep:v$* --push ../ diff --git a/src/cell_type_location.py b/src/cell_type_location.py new file mode 100644 index 000000000..91abfdeeb --- /dev/null +++ b/src/cell_type_location.py @@ -0,0 +1,190 @@ +from argparse import ArgumentParser +from itertools import product +import re +import pandas as pd +import os +import json + +from uberongraph_tools import UberonGraph +from ccf_tools import split_terms, transform_to_str + +def get_ct_loc_marker(file): + def is_valid_id(content): + if re.match("(CL|UBERON|HGNC)\:[0-9]+", content): + return content + else: + return False + + asct_b = json.load(open(file)) + + out = [] + + for row in asct_b: + anatomical_structures = row["anatomical_structures"] + cell_types = row["cell_types"] + biomarkers = row["biomarkers"] + refs = row["references"] + + if not biomarkers or not anatomical_structures or not cell_types: + continue + + last_as = anatomical_structures[-1] + last_ct = cell_types[-1] + + if last_ct["id"] == "": + if len(cell_types) > 1: + last_ct = cell_types[-2] + if last_ct["id"] == "": + continue + + if last_as["id"] == "": + if len(anatomical_structures) > 1: + last_as = anatomical_structures[-2] + if last_as["id"] == "": + continue + + if not is_valid_id(last_ct["id"]) or not is_valid_id(last_as["id"]): + continue + + markers_group = sorted([marker["id"] for marker in biomarkers if is_valid_id(marker["id"])]) + + if not markers_group: + continue + + refs_group_doi = [ref["doi"].replace(' ', '') for ref in refs] + + refs_group_pmid = [list(map(lambda x: x.replace(' ', ''), ref["id"].split('.'))) for ref in refs if "PM" in ref["id"]] + refs_group_pmid = [pid for pmid in refs_group_pmid for pid in pmid] + + r = {} + r["Terminal AS/ID"] = last_as["id"] + r["Terminal AS/label"] = last_as["rdfs_label"] + r["Terminal AS/user_label"] = last_as["name"] + r["Terminal CT/ID"] = last_ct["id"] + r["Terminal CT/label"] = last_ct["rdfs_label"] + r["Terminal CT/user_label"] = last_ct["name"] + r["Markers"] = ', '.join(markers_group) + r["References"] = '|'.join(refs_group_doi + refs_group_pmid) + out.append(r) + + report = None + if out: + report = pd.DataFrame.from_records(out).drop_duplicates(["Terminal AS/ID", "Terminal CT/ID", "Markers"]).sort_values("Terminal CT/ID") + + return report + +def merge_csv(path): + dir_path = os.path.dirname(path) + csv_files = os.listdir(os.path.dirname(path)) + filter = ["cell-loc-diff-markers.tsv", "ct_loc_b_report.tsv"] + for file in filter: + csv_files.remove(file) + + pds = [] + + for f in csv_files: + rep = pd.read_csv(f'{dir_path}/{f}', sep='\t') + name = f.split('_report') + rep['Table'] = name[0] + pds.append(rep) + + df = pd.concat(pds, ignore_index=True).drop_duplicates().sort_values("Terminal CT/ID") + + df.to_csv(path, sep='\t', index=False) + + + +def create_template(input, relationship): + output = [{'ID': 'ID', + 'Label': 'LABEL', + 'Equivalent axioms': 'EC %', + 'Equivalent relationship axioms': f'EC {relationship} some %', + }] + + for _, row in input.iterrows(): + d = {} + d['Label'] = f'{row["Terminal CT/label"]} of {row["Terminal AS/label"]}' + d['Equivalent axioms'] = row["Terminal CT/ID"] + d['Equivalent relationship axioms'] = row["Terminal AS/ID"] + output.append(d) + return pd.DataFrame.from_records(output) + +def generate_id(start_range, end_range): + for i in range(start_range, end_range, 1): + yield f'CL:{str(i)}' + +def create_dosdp_template(input): + output = [] + cl_id = generate_id(6000011, 6003543) + for _, row in input.iterrows(): + d = {} + d["defined_class"] = next(cl_id) + d["defined_class_label"] = "" + d["cell"] = row["Terminal CT/ID"] + d["anatomical_entity"] = row["Terminal AS/ID"] + d["pubs"] = row["References"] + output.append(d) + + return pd.DataFrame.from_records(output) + +def template(args): + ug = UberonGraph() + + report = pd.read_csv(args.input, sep='\t') + dir_path = os.path.dirname(args.input) + + # Filtering cases where there're more than 1 CT, AS and Marker list. + multi_loc_rep = report.groupby(['Terminal AS/ID', 'Terminal CT/ID']).filter(lambda x: len(x)>1) + multi_loc_rep.to_csv(f"{dir_path}/multi_loc_report.tsv", sep="\t", index=False) + + # Same CT and AS with different Marker list + cell_loc_diff_markers = multi_loc_rep.drop_duplicates(['Terminal AS/ID','Terminal CT/ID','Markers']).sort_values(['Terminal AS/ID','Terminal CT/ID']).groupby(['Terminal AS/ID','Terminal CT/ID']).filter(lambda x: len(x)>1) + cell_loc_diff_markers.to_csv(f"{dir_path}/cell-loc-diff-markers.tsv", sep="\t", index=False) + + # Filtering the rows from cell_loc_diff_marks +# clean_report = multi_loc_rep[(multi_loc_rep['Terminal AS/ID'].isin(cell_loc_diff_markers['Terminal AS/ID']) == False) & (multi_loc_rep['Terminal CT/ID'].isin(cell_loc_diff_markers['Terminal CT/ID']) == False)].drop_duplicates(['Terminal AS/ID','Terminal CT/ID']) + clean_report = cell_loc_diff_markers[~cell_loc_diff_markers.isin(multi_loc_rep)].dropna() + clean_report.to_csv('clean_report.tsv', sep='\t', index=False) + + # leukocyte myeloid cell + parent_classes = ["CL:0000738", "CL:0000763"] + ct_list = list(clean_report["Terminal CT/ID"].drop_duplicates()) + combine = list(product(ct_list, parent_classes)) + + terms_pairs = transform_to_str(combine) + + valid_subclass, not_valid_subclass = ug.verify_relationship(terms_pairs=terms_pairs, relationship=ug.select_subclass) + + terms_ct_i, _ = split_terms(transform_to_str(valid_subclass)) + ccf_input_temp = clean_report.loc[clean_report["Terminal CT/ID"].isin(terms_ct_i)] + + ccf_template = create_template(ccf_input_temp, "located in") + ccf_template.to_csv(args.output, sep='\t', index=False) + + terms_ct_ni, _ = split_terms(not_valid_subclass) + terms_ct = set(terms_ct_ni) - set(terms_ct_i) + cl_input_temp = clean_report.loc[clean_report["Terminal CT/ID"].isin(terms_ct)][["Terminal AS/ID", "Terminal CT/ID", "References"]].drop_duplicates() + + cl_template = create_dosdp_template(cl_input_temp) + cl_template.to_csv('../templates/cellPartOfAnatomicalEntity.tsv', sep='\t', index=False) + +def generate(args): + report = get_ct_loc_marker(args.input) + + if report is not None: + report.to_csv(args.output, sep='\t', index=False) + + +if __name__ == '__main__': + parser = ArgumentParser() + parser.add_argument('-i', '--input', help='input json file') + parser.add_argument('-o', '--output', help='output csv file') + parser.add_argument('-m', '--mode', help='three modes to deal with report: generate, merge or template') + + args = parser.parse_args() + if args.mode == 'generate': + generate(args) + elif args.mode == 'merge': + merge_csv(args.output) + elif args.mode == 'template': + template(args) \ No newline at end of file diff --git a/templates/ccf_compound.tsv b/templates/ccf_compound.tsv new file mode 100644 index 000000000..ba20d844a --- /dev/null +++ b/templates/ccf_compound.tsv @@ -0,0 +1,4 @@ +ID Label Equivalent axioms Equivalent relationship axioms +ID LABEL EC % EC located in some % + mature eosinophil of crypt CL:0000041 UBERON:0013485 + dermal dendritic cell of dermis CL:0001006 UBERON:0002067 diff --git a/templates/cellPartOfAnatomicalEntity.tsv b/templates/cellPartOfAnatomicalEntity.tsv new file mode 100644 index 000000000..bd6336b15 --- /dev/null +++ b/templates/cellPartOfAnatomicalEntity.tsv @@ -0,0 +1,23 @@ +defined_class defined_class_label cell anatomical_entity pubs +CL:6000011 CL:0000057 UBERON:0012399 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 +CL:6000012 CL:0000057 UBERON:0012398 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 +CL:6000013 CL:0000057 UBERON:0007177 DOI:10.1111/j.1440-1827.1989.tb02421.x|DOI:10.1034/j.1600-065x.2003.00072.x|PMID:2618659|PMID:12969318 +CL:6000014 CL:0000165 UBERON:0007177 DOI:10.1111/j.1440-1827.1989.tb02421.x|DOI:10.1034/j.1600-065x.2003.00072.x|PMID:2618659|PMID:12969318 +CL:6000015 CL:0000165 UBERON:0011184 DOI:10.1159/000501521|PMID:31390635|PMCID:PMC6888884 +CL:6000016 CL:0000186 UBERON:0007177 DOI:10.1111/j.1440-1827.1989.tb02421.x|DOI:10.1034/j.1600-065x.2003.00072.x|PMID:2618659|PMID:12969318 +CL:6000018 CL:0000523 UBERON:0000088 DOI:10.1016/S0143-4004(05)80438-2|DOI:10.1016/S0143-4004(05)80438-2|DOI:10.1016/j.ajpath.2014.08.006|DOI:10.1016/j.jim.2003.03.001|DOI:10.1053/plac.2000.0559|DOI:10.1095/biolreprod.106.055244 +CL:6000020 CL:0002144 UBERON:0007177 DOI:10.1111/j.1440-1827.1989.tb02421.x|DOI:10.1034/j.1600-065x.2003.00072.x|PMID:2618659|PMID:12969318 +CL:6000021 CL:0002573 UBERON:0005304 PMID:2621148|PMCID:PMC1256735 +CL:6000022 CL:0002573 UBERON:0007177 DOI:10.1111/j.1440-1827.1989.tb02421.x|DOI:10.1034/j.1600-065x.2003.00072.x|PMID:2618659|PMID:12969318 +CL:6000023 CL:0002573 UBERON:0012398 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 +CL:6000024 CL:0002573 UBERON:0012399 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 +CL:6000025 CL:0008036 UBERON:0000088 DOI:10.1016/0198-8859(93)90138-Q|DOI:10.1016/j.jim.2003.03.001|DOI:10.1053/plac.2000.0559|DOI:10.1095/biolreprod.106.055244|PMID:8804361|DOI:10.1155/2021/6662201|DOI:10.1093/humrep/dem265|DOI:10.1242/dev.148932|PMID:8804361 +CL:6000026 CL:0009009 UBERON:0011184 DOI:10.1016/j.humpath.2008.12.003|PMID:19269007 +CL:6000027 CL:0009011 UBERON:0011184 DOI:10.1038/s42003-020-01181-z|PMID:32814826|PMCID:PMC7438495 +CL:6000028 CL:0019032 UBERON:0011184 DOI:10.1038/s42003-020-01181-z|DOI:10.1038/s41598-019-53997-3|DOI:10.4049/jimmunol.1801069|PMID:32814826|PMCID:PMC7438495|PMID:31767912|PMCID:PMC6877571|PMID:30782851|PMCID:PMC6383804 +CL:6000029 CL:1000279 UBERON:0012398 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 +CL:6000030 CL:1000279 UBERON:0012399 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 +CL:6000031 CL:1000412 UBERON:0012399 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 +CL:6000032 CL:1000412 UBERON:0012398 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 +CL:6000033 CL:1000414 UBERON:0012399 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029 +CL:6000034 CL:1000414 UBERON:0012398 DOI:10.1007/978-1-4939-0897-4_3|PMID:24997029