packages.bib

@Manual{R-amt,
  title = {amt: Animal Movement Tools},
  author = {Johannes Signer},
  year = {2022},
  note = {R package version 0.1.7},
  url = {https://github.com/jmsigner/amt},
}

@Manual{R-base,
  title = {R: A Language and Environment for Statistical Computing},
  author = {{R Core Team}},
  organization = {R Foundation for Statistical Computing},
  address = {Vienna, Austria},
  year = {2021},
  url = {https://www.R-project.org/},
}

@Manual{R-bookdown,
  title = {bookdown: Authoring Books and Technical Documents with R Markdown},
  author = {Yihui Xie},
  note = {https://github.com/rstudio/bookdown},
  year = {2022},
}

@Manual{R-broom.mixed,
  title = {broom.mixed: Tidying Methods for Mixed Models},
  author = {Ben Bolker and David Robinson},
  year = {2022},
  note = {R package version 0.2.9.3},
  url = {https://github.com/bbolker/broom.mixed},
}

@Manual{R-conflicted,
  title = {conflicted: An Alternative Conflict Resolution Strategy},
  author = {Hadley Wickham},
  year = {2021},
  note = {R package version 1.1.0},
  url = {https://CRAN.R-project.org/package=conflicted},
}

@Manual{R-data.table,
  title = {data.table: Extension of `data.frame`},
  author = {Matt Dowle and Arun Srinivasan},
  note = {https://r-datatable.com, https://Rdatatable.gitlab.io/data.table},
  year = {2022},
}

@Manual{R-distanceto,
  title = {distanceto: Calculate Distance to Features},
  author = {Alec L. Robitaille},
  year = {2021},
  note = {R package version 0.0.2},
  url = {https://CRAN.R-project.org/package=distanceto},
}

@Manual{R-downlit,
  title = {downlit: Syntax Highlighting and Automatic Linking},
  author = {Hadley Wickham},
  year = {2021},
  note = {R package version 0.4.0},
  url = {https://CRAN.R-project.org/package=downlit},
}

@Manual{R-ggplot2,
  title = {ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics},
  author = {Hadley Wickham and Winston Chang and Lionel Henry and Thomas Lin Pedersen and Kohske Takahashi and Claus Wilke and Kara Woo and Hiroaki Yutani and Dewey Dunnington},
  year = {2021},
  note = {R package version 3.3.5},
  url = {https://CRAN.R-project.org/package=ggplot2},
}

@Manual{R-ggthemes,
  title = {ggthemes: Extra Themes, Scales and Geoms for ggplot2},
  author = {Jeffrey B. Arnold},
  year = {2021},
  note = {R package version 4.2.4},
  url = {https://github.com/jrnold/ggthemes},
}

@Manual{R-gh,
  title = {gh: GitHub 'API'},
  author = {Jennifer Bryan and Hadley Wickham},
  year = {2021},
  note = {R package version 1.3.0},
  url = {https://CRAN.R-project.org/package=gh},
}

@Manual{R-glmmTMB,
  title = {glmmTMB: Generalized Linear Mixed Models using Template Model Builder},
  author = {Mollie Brooks and Ben Bolker and Kasper Kristensen and Martin Maechler and Arni Magnusson and Hans Skaug and Anders Nielsen and Casper Berg and Koen {van Bentham}},
  year = {2022},
  note = {R package version 1.1.3},
  url = {https://github.com/glmmTMB/glmmTMB},
}

@Manual{R-knitr,
  title = {knitr: A General-Purpose Package for Dynamic Report Generation in R},
  author = {Yihui Xie},
  year = {2022},
  note = {R package version 1.38},
  url = {https://yihui.org/knitr/},
}

@Manual{R-parsedate,
  title = {parsedate: Recognize and Parse Dates in Various Formats, Including All ISO
8601 Formats},
  author = {Gábor Csárdi and Linus Torvalds},
  year = {2022},
  note = {R package version 1.3.0},
  url = {https://github.com/gaborcsardi/parsedate},
}

@Manual{R-qs,
  title = {qs: Quick Serialization of R Objects},
  author = {Travers Ching},
  year = {2022},
  note = {R package version 0.25.3},
  url = {https://github.com/traversc/qs},
}

@Manual{R-raster,
  title = {raster: Geographic Data Analysis and Modeling},
  author = {Robert J. Hijmans},
  year = {2022},
  note = {R package version 3.5-15},
  url = {https://rspatial.org/raster},
}

@Manual{R-renv,
  title = {renv: Project Environments},
  author = {Kevin Ushey},
  year = {2022},
  note = {R package version 0.15.4},
  url = {https://rstudio.github.io/renv/},
}

@Manual{R-rmarkdown,
  title = {rmarkdown: Dynamic Documents for R},
  author = {JJ Allaire and Yihui Xie and Jonathan McPherson and Javier Luraschi and Kevin Ushey and Aron Atkins and Hadley Wickham and Joe Cheng and Winston Chang and Richard Iannone},
  year = {2022},
  note = {R package version 2.13},
  url = {https://CRAN.R-project.org/package=rmarkdown},
}

@Manual{R-sf,
  title = {sf: Simple Features for R},
  author = {Edzer Pebesma},
  year = {2022},
  note = {R package version 1.0-7},
  url = {https://CRAN.R-project.org/package=sf},
}

@Manual{R-sp,
  title = {sp: Classes and Methods for Spatial Data},
  author = {Edzer Pebesma and Roger Bivand},
  year = {2021},
  note = {R package version 1.4-6},
  url = {https://CRAN.R-project.org/package=sp},
}

@Manual{R-tarchetypes,
  title = {tarchetypes: Archetypes for Targets},
  author = {William Michael Landau},
  year = {2022},
  note = {R package version 0.5.0},
  url = {https://CRAN.R-project.org/package=tarchetypes},
}

@Manual{R-targets,
  title = {targets: Dynamic Function-Oriented Make-Like Declarative Workflows},
  author = {William Michael Landau},
  year = {2022},
  note = {R package version 0.11.0},
  url = {https://CRAN.R-project.org/package=targets},
}

@Manual{R-visNetwork,
  title = {visNetwork: Network Visualization using vis.js Library},
  author = {{Almende B.V. and Contributors} and Benoit Thieurmel and Titouan Robert},
  year = {2021},
  note = {R package version 2.1.0},
  url = {http://datastorm-open.github.io/visNetwork/},
}

@Manual{R-xml2,
  title = {xml2: Parse XML},
  author = {Hadley Wickham and Jim Hester and Jeroen Ooms},
  year = {2021},
  note = {R package version 1.3.3},
  url = {https://CRAN.R-project.org/package=xml2},
}

@Article{amt2019,
  title = {Animal movement tools (amt): R package for managing tracking data and conducting habitat selection analyses},
  author = {Johannes Signer and John Fieberg and Tal Avgar},
  journal = {Ecology and Evolution},
  year = {2019},
  volume = {9},
  pages = {880--890},
  url = {https://doi.org/10.1002/ece3.4823},
}

@Book{bookdown2016,
  title = {bookdown: Authoring Books and Technical Documents with {R} Markdown},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2016},
  note = {ISBN 978-1138700109},
  url = {https://bookdown.org/yihui/bookdown},
}

@Book{ggplot22016,
  author = {Hadley Wickham},
  title = {ggplot2: Elegant Graphics for Data Analysis},
  publisher = {Springer-Verlag New York},
  year = {2016},
  isbn = {978-3-319-24277-4},
  url = {https://ggplot2.tidyverse.org},
}

@Article{glmmTMB2017,
  author = {Mollie E. Brooks and Kasper Kristensen and Koen J. {van Benthem} and Arni Magnusson and Casper W. Berg and Anders Nielsen and Hans J. Skaug and Martin Maechler and Benjamin M. Bolker},
  title = {{glmmTMB} Balances Speed and Flexibility Among Packages for Zero-inflated Generalized Linear Mixed Modeling},
  year = {2017},
  journal = {The R Journal},
  url = {https://journal.r-project.org/archive/2017/RJ-2017-066/index.html},
  pages = {378--400},
  volume = {9},
  number = {2},
}

@Book{knitr2015,
  title = {Dynamic Documents with {R} and knitr},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2015},
  edition = {2nd},
  note = {ISBN 978-1498716963},
  url = {https://yihui.org/knitr/},
}

@InCollection{knitr2014,
  booktitle = {Implementing Reproducible Computational Research},
  editor = {Victoria Stodden and Friedrich Leisch and Roger D. Peng},
  title = {knitr: A Comprehensive Tool for Reproducible Research in {R}},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  year = {2014},
  note = {ISBN 978-1466561595},
  url = {http://www.crcpress.com/product/isbn/9781466561595},
}

@Book{rmarkdown2018,
  title = {R Markdown: The Definitive Guide},
  author = {Yihui Xie and J.J. Allaire and Garrett Grolemund},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2018},
  note = {ISBN 9781138359338},
  url = {https://bookdown.org/yihui/rmarkdown},
}

@Book{rmarkdown2020,
  title = {R Markdown Cookbook},
  author = {Yihui Xie and Christophe Dervieux and Emily Riederer},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2020},
  note = {ISBN 9780367563837},
  url = {https://bookdown.org/yihui/rmarkdown-cookbook},
}

@Article{sf2018,
  author = {Edzer Pebesma},
  title = {{Simple Features for R: Standardized Support for Spatial Vector Data}},
  year = {2018},
  journal = {{The R Journal}},
  doi = {10.32614/RJ-2018-009},
  url = {https://doi.org/10.32614/RJ-2018-009},
  pages = {439--446},
  volume = {10},
  number = {1},
}

@Article{sp2005,
  author = {Edzer J. Pebesma and Roger S. Bivand},
  title = {Classes and methods for spatial data in {R}},
  journal = {R News},
  year = {2005},
  volume = {5},
  number = {2},
  pages = {9--13},
  month = {November},
  url = {https://CRAN.R-project.org/doc/Rnews/},
}

@Book{sp2013,
  author = {Roger S. Bivand and Edzer Pebesma and Virgilio Gomez-Rubio},
  title = {Applied spatial data analysis with {R}, Second edition},
  year = {2013},
  publisher = {Springer, NY},
  url = {https://asdar-book.org/},
}

@Manual{tarchetypes2021,
  title = {tarchetypes: Archetypes for Targets},
  author = {William Michael Landau},
  year = {2021},
  note = {{https://docs.ropensci.org/tarchetypes/, https://github.com/ropensci/tarchetypes}},
}

@Article{targets2021,
  title = {The targets R package: a dynamic Make-like function-oriented pipeline toolkit for reproducibility and high-performance computing},
  author = {William Michael Landau},
  journal = {Journal of Open Source Software},
  year = {2021},
  volume = {6},
  number = {57},
  pages = {2959},
  url = {https://doi.org/10.21105/joss.02959},
}