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cufit.m
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cufit.m
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function cufit(action)
global cdata
global data
if nargin<1,
action='Initialize';
end
%%%%%%%%%%%%%%See what VSPlot needs to do%%%%%%%%%%%%%
switch(action)
%%%%%%%%%%%%%%When run for the first time%%%%%%%%%%%%%
case 'Initialize'
version=['Tuning Curve | Started - ',datestr(now)];
cufitfig; %our GUI file
set(gcf,'Name', version);
cdata=[];
if get(gh('BurstTonicBox'),'Value')==0 & get(gh('Beebox'),'Value')==0
set(gh('CurveType'),'String',{'Control';'Drug 1';'Drug 2';'Recovery'});
set(gh('HoldValue'),'String',{'X Variable Held';'Y Variable Held'});
set(gh('HoldValue'),'Value',2);
set(gh('PlotType'),'String',{'Raw Data';'Contour'});
t=strvcat('Control','Drug 1','Drug 2','Recovery');
elseif get(gh('Beebox'),'Value')==1
set(gh('CurveType'),'String',{'Mono';'Red';'Green';'Blue';'Yellow'});
set(gh('HoldValue'),'String',{'X Variable Held';'Y Variable Held'});
set(gh('HoldValue'),'Value',2);
t=strvcat('Mono','Red','Green','Blue','Yellow');
elseif get(gh('BurstTonicBox'),'Value')==1
set(gh('CurveType'),'String',{'All Spikes';'Burst';'Temp';'Tonic'});
set(gh('HoldValue'),'String',{'X Variable Held';'Y Variable Held'});
set(gh('HoldValue'),'Value',2);
t=strvcat('All Spikes','Burst ','Temp','Tonic');
end
set(gh('Curve1Menu'),'String',t);
set(gh('Curve2Menu'),'String',t);
cdata.init=1;
cdata.type=[];
cdata.control=0;
cdata.anal='';
cdata.drug1=0;
cdata.drug2=0;
cdata.recovery=0;
cdata.data5=0;
case 'Load'
cdata.curve1=[];
cdata.curve2=[];
cdata.curve1err=[];
cdata.curve2err=[];
cdata.curveax=[];
if isempty(data)
errordlg('Sorry, cant find Spikes Data file...')
return;
end
cdata.type=get(gh('CurveType'),'Value');
if cdata.type==1
cdata.control=1;
cdata.xvalues=data.xvalues;
if data.numvars==1
cdata.yvalues=1
set(gh('HoldValue'),'Enable','off');
set(gh('YMenu'),'Enable','off');
set(gh('XMenu'),'Enable','on');
else
cdata.yvalues=data.yvalues;
set(gh('HoldValue'),'Enable','on');
set(gh('YMenu'),'Enable','on');
set(gh('XMenu'),'Enable','on');
end
set(findobj('Tag','d1radio'),'Value',1)
elseif cdata.type==2
cdata.drug1=1;
if data.xvalues~=cdata.xvalues
errordlg('Sorry, data has different variables to control')
end
set(findobj('Tag','d2radio'),'Value',1)
elseif cdata.type==3
cdata.drug2=1;
if data.xvalues~=cdata.xvalues
errordlg('Sorry, data has different variables to control')
end
set(findobj('Tag','d3radio'),'Value',1)
elseif cdata.type==4
cdata.recovery=1;
if data.xvalues~=cdata.xvalues
errordlg('Sorry, data has different variables to control')
end
set(findobj('Tag','d4radio'),'Value',1)
elseif cdata.type==5
cdata.data5=1;
if data.xvalues~=cdata.xvalues
errordlg('Sorry, data has different variables to control')
end
set(findobj('Tag','d5radio'),'Value',1)
end
if get(gh('CFNormalizeBox'),'Value')==1& get(gh('Beebox'),'Value')==0
for i=1:data.yrange
if data.plotburst==0 & data.plottonic==0
data.errormat(i,:) = data.errormat(i,:) ./ max(data.matrix(i,:));
data.matrix(i,:) = data.matrix(i,:) ./ max(data.matrix(i,:));
elseif data.plotburst==1
data.errormat(i,:) = data.errormat(i,:) ./ max(data.bmatrix(i,:));
data.bmatrix(i,:) = data.bmatrix(i,:) ./ max(data.bmatrix(i,:));
elseif data.plottonic==1
data.errormat(i,:) = data.errormat(i,:) ./ max(data.tmatrix(i,:));
data.tmatrix(i,:) = data.tmatrix(i,:) ./ max(data.tmatrix(i,:));
end
end
end
if data.plotburst==0 & data.plottonic==0
cdata.anal='mean';
cdata.matrix{cdata.type}=data.matrix;
cdata.error{cdata.type}=data.errormat;
elseif data.plotburst==1
cdata.anal='burst';
cdata.matrix{cdata.type}=data.bmatrix;
cdata.error{cdata.type}=data.errormat;
elseif data.plottonic==1
cdata.anal='tonic';
cdata.matrix{cdata.type}=data.tmatrix;
cdata.error{cdata.type}=data.errormat;
end
cdata.title{cdata.type}=data.matrixtitle;
set(gh('XMenu'),'String',num2str(cdata.xvalues'));
set(gh('YMenu'),'String',num2str(cdata.yvalues'));
colour.error=[];
colour.matrix=[];
intensity.error=[];
intensity.matrix=[];
case 'Bee plot'
if get(gh('CFNormalizeBox'),'Value')==1 & get(gh('Beebox'),'Value')==1
for i=1:cdata.type
colour.error{i}=cdata.error{i};
colour.error{i}(1) = 0; %cdata.error{i} - cdata.error{i}(1);
colour.matrix{i} = cdata.matrix{i} -cdata.matrix{i}(1);
end
else %if get(gh('Beebox'),'Value')==1 & get(gh('CFNormalizeBox'),'Value')==0
for i=1:cdata.type
colour.error{i} = cdata.error{i};
colour.matrix{i} = cdata.matrix{i} ;
end
end
figure
hold on
plot(cdata.xvalues, colour.matrix{1},'ks-','linewidth',[3],'MarkerSize',8,'MarkerFaceColor',[0 0 0])
hold on
plot(cdata.xvalues, colour.matrix{2},'rs-','linewidth',[3],'MarkerSize',7,'MarkerFaceColor',[1 0 0])
hold on
plot(cdata.xvalues, colour.matrix{3},'go-','linewidth',[3],'MarkerSize',6,'MarkerFaceColor',[0 1 0])
hold on
plot(cdata.xvalues, colour.matrix{4},'bo-','linewidth',[3],'MarkerSize',6,'MarkerFaceColor',[0 0 1])
hold on
plot(cdata.xvalues, colour.matrix{5},'yo-','linewidth',[3],'MarkerSize',6,'MarkerFaceColor',[1 1 0])
T=get(gh('CurveType'),'String');
legend('Mono','Red','Green','Blue','Yellow',0);
hold on
errorbar(cdata.xvalues, colour.matrix{1}, colour.error{1},'k-')
hold on
errorbar(cdata.xvalues, colour.matrix{2}, colour.error{2},'r-')
hold on
errorbar(cdata.xvalues, colour.matrix{3}, colour.error{3},'g-')
hold on
errorbar(cdata.xvalues, colour.matrix{4}, colour.error{4},'b-')
hold on
errorbar(cdata.xvalues, colour.matrix{5}, colour.error{5},'y-')
T=get(gh('CurveType'),'String');
legend('Mono','Red','Green','Blue','Yellow',0);
t=cdata.title;
t=[t{1}(1:7),t{1}(12:13),'/',t{2}(12:13),'/',t{3}(12:13),'/',t{4}(12:13),'/',t{5}(12:end)];
title(t);
ylabel('Firing Rate')
xlabel('Colour Intensity')
hold off
for i=1:cdata.type
intensity.error{i}=colour.error{i};
intensity.matrix{i}=colour.matrix{i};
end
ii=get(gh('XMenu'), 'Value');
c=cdata.xvalues(ii);
c=num2str(c);
figure
hold on
bar(1,colour.matrix{1}(ii), 'k-')
hold on
bar(2,colour.matrix{4}(ii), 'b-')
hold on
bar(3,colour.matrix{3}(ii), 'g-')
hold on
bar(4,colour.matrix{5}(ii), 'y-')
hold on
bar(5,colour.matrix{2}(ii), 'r-')
%legend('Mono','Blue','Green','Yellow','Red',0);
hold on
errorbar(1, colour.matrix{1}(ii), colour.error{1}(ii),'k-')
hold on
errorbar( 2,colour.matrix{4}(ii), colour.error{4}(ii),'b-')
hold on
errorbar(3,colour.matrix{3}(ii), colour.error{3}(ii),'g-')
hold on
errorbar(4,colour.matrix{5}(ii), colour.error{5}(ii),'y-')
hold on
errorbar(5,colour.matrix{2}(ii), colour.error{2}(ii),'r-')
t=cdata.title;
t=[t{1}(1:6),t{1}(12:13),'/',t{2}(12:13),'/',t{3}(12:13),'/',t{4}(12:13),'/',t{5}(12:end),'--', 'Intensity:',c];
title(t);
ylabel('Firing Rate (s/s)')
xlabel('Colour ')
xx=1:cdata.type;
set(gca,'XTick',xx);
set(gca,'XTickLabel',{'Mono','Blue','Green','Yellow','Red'});
curve1.error=[];
curve2.matrix=[];
case '2ColourPlot'
if get(gh('CFNormalizeBox'),'Value')==1 & get(gh('Beebox'),'Value')==1
for i=1:cdata.type
colour.error{i}=cdata.error{i};
colour.error{i}(1) = 0; %cdata.error{i} - cdata.error{i}(1);
colour.matrix{i} = cdata.matrix{i} -cdata.matrix{i}(1);
end
else %if get(gh('Beebox'),'Value')==1 & get(gh('CFNormalizeBox'),'Value')==0
for i=1:cdata.type
colour.error{i} = cdata.error{i};
colour.matrix{i} = cdata.matrix{i} ;
end
end
x=get(gh('Curve1Menu'),'Value');
y=get(gh('Curve2Menu'),'Value');
T={'Mono';'Red';'Green';'Blue';'Yellow'};
T1=T(x);
T2=T(y);
S=[T1 T2];
curve1.error = colour.error{x};
curve2.error = colour.error{y};
curve1.matrix = colour.matrix{x};
curve2.matrix = colour.matrix{y};
figure
hold on
if x==1
plot(cdata.xvalues, curve1.matrix,'ks-','linewidth',[3],'MarkerSize',8,'MarkerFaceColor',[0 0 0])
elseif x==2
plot(cdata.xvalues, curve1.matrix,'rs-','linewidth',[3],'MarkerSize',8,'MarkerFaceColor',[1 0 0])
elseif x==3
plot(cdata.xvalues, curve1.matrix,'gs-','linewidth',[3],'MarkerSize',8,'MarkerFaceColor',[0 1 0])
elseif x==4
plot(cdata.xvalues, curve1.matrix,'bs-','linewidth',[3],'MarkerSize',8,'MarkerFaceColor',[0 0 1])
else x==5
plot(cdata.xvalues, curve1.matrix,'ys-','linewidth',[3],'MarkerSize',8,'MarkerFaceColor',[1 1 0])
end
hold on
if y==1
plot(cdata.xvalues, curve2.matrix,'ks-','linewidth',[3],'MarkerSize',8,'MarkerFaceColor',[0 0 0])
elseif y==2
plot(cdata.xvalues, curve2.matrix,'rs-','linewidth',[3],'MarkerSize',8,'MarkerFaceColor',[1 0 0])
elseif y==3
plot(cdata.xvalues, curve2.matrix,'gs-','linewidth',[3],'MarkerSize',8,'MarkerFaceColor',[0 1 0])
elseif y==4
plot(cdata.xvalues, curve2.matrix,'bs-','linewidth',[3],'MarkerSize',8,'MarkerFaceColor',[0 0 1])
else y==5
plot(cdata.xvalues, curve2.matrix,'ys-','linewidth',[3],'MarkerSize',8,'MarkerFaceColor',[1 1 0])
end
legend(S,0);
hold on
if x==1
errorbar(cdata.xvalues, curve1.matrix, curve1.error,'k-')
elseif x==2
errorbar(cdata.xvalues, curve1.matrix, curve1.error,'r-')
elseif x==3
errorbar(cdata.xvalues, curve1.matrix, curve1.error,'g-')
elseif x==4
errorbar(cdata.xvalues, curve1.matrix, curve1.error,'b-')
else x==5
errorbar(cdata.xvalues, curve1.matrix, curve1.error,'y-')
end
hold on
if y==1
errorbar(cdata.xvalues, curve2.matrix, curve2.error,'k-')
elseif y==2
errorbar(cdata.xvalues, curve2.matrix, curve2.error,'r-')
elseif y==3
errorbar(cdata.xvalues, curve2.matrix, curve2.error,'g-')
elseif y==4
errorbar(cdata.xvalues, curve2.matrix, curve2.error,'b-')
else y==5
errorbar(cdata.xvalues, curve2.matrix, curve2.error,'y-')
end
legend(S,0);
t=cdata.title;
t=[t{x}(1:7),t{1}(12:13),'/',t{y}(12:end)];
title(t);
ylabel('Firing Rate')
xlabel('Colour Intensity')
hold off
case 'qplot'
if data.numvars==1
if get(gh('CFNormalizeBox'),'Value')==1
x=get(gh('Curve1Menu'),'Value');
T=get(gh('Curve1Menu'),'String');
T=T(x,:);
a=cdata.matrix{x};
aerr=cdata.error{x};
w=cdata.xvalues;
elseif get(gh('CFNormalizeBox'),'Value')==0
errordlg('Sorry, has to normalize the data first')
end
if w(1)==0
s=a(1);
a=a-s;
else
errordlg('sorry, no 0 diameter, please calculate manually')
s=0;
end
[m,i]=max(a);
a=a./max(a);
d=w(i);
figure;
areabar(w, a, aerr,[.9 .8 .8],'Color',[1 0 0],'Marker','s','MarkerSize',6,'MarkerFaceColor',[1 0 0])
t=cdata.title{x};
title(t);
ylabel('Normalized Firing Rate');
xlabel('Diameter');
legend(T,0)
[xx,b]=ginput(2);
b=mean(b);
b=100-b*100;
o=[s,d,b]; %spontaneous - diameter - percent suppression
t1=['Spontaneous: ' sprintf('%0.5f',s)];
t2=['Optimal Diameter: ' sprintf('%0.5g',d)];
t3=['Surround Suppression: ' sprintf('%0.5f',b)];
tt={t1,t2,t3};
gtext (tt);
%gtext(num2str(o))
s=[sprintf('%s\t',t),sprintf('%0.6g\t',o)];
clipboard('Copy',s);
else data.numvars==2 % Two Variable Condition
if get(gh('CFNormalizeBox'),'Value')==1
y=get(gh('YMenu'),'Value');
YY=cdata.yvalues(y);
x=get(gh('Curve1Menu'),'Value');
T=get(gh('Curve1Menu'),'String');
T=T(x,:);
a=cdata.matrix{x};
a=a(y,:);
aerr=cdata.error{x};
aerr=aerr(y,:);
w=cdata.xvalues;
elseif get(gh('CFNormalizeBox'),'Value')==0
errordlg('Sorry, has to normalize the data first')
end
if w(1)==0
s=a(1);
a=a-s;
else
errordlg('sorry, no 0 diameter, please calculate manually')
s=0;
end
[m,i]=max(a);
a=a./max(a);
d=w(i);
figure;
areabar(w, a, aerr,[.9 .8 .8],'Color',[1 0 0],'Marker','s','MarkerSize',6,'MarkerFaceColor',[1 0 0])
t=cdata.title{x};
yt=['----' data.ytitle ' ' sprintf('%0.5g',YY)];
t=[t yt];
title(t);
ylabel('Normalized Firing Rate');
xlabel('Diameter');
legend(T,0)
[xx,b]=ginput(2);
b=mean(b);
b=100-b*100;
o=[s,d,b]; %spontaneous - diameter - percent suppression
t1=['Spontaneous: ' sprintf('%0.5f',s)];
t2=['Optimal Diameter: ' sprintf('%0.5g',d)];
t3=['Surround Suppression: ' sprintf('%0.5f',b)];
tt={t1,t2,t3};
gtext (tt);
%gtext(num2str(o))
s=[sprintf('%s\t',t),sprintf('%0.6g\t',o)];
clipboard('Copy',s);
end
case 'Plot'
cla
x=get(gh('HoldValue'),'Value');
if x==1
cdata.held=get(gh('XMenu'),'Value');
cdata.dim=1;
elseif x==2
cdata.held=get(gh('YMenu'),'Value');
cdata.dim=2;
end
x=get(gh('Curve1Menu'),'Value')
y=get(gh('Curve1Menu'),'String')
l{1}=y(x,:)
if cdata.dim==1
cdata.curve1=cdata.matrix{x}(1:end,cdata.held);
cdata.curve1err=cdata.error{x}(1:end,cdata.held);
cdata.curveax=cdata.yvalues;
elseif cdata.dim==2
cdata.curve1=cdata.matrix{x}(cdata.held,1:end);
cdata.curve1err=cdata.error{x}(cdata.held,1:end);
cdata.curveax=cdata.xvalues;
end
x=get(gh('Curve2Menu'),'Value')
y=get(gh('Curve2Menu'),'String')
l{2}=y(x,:)
if cdata.dim==1
cdata.curve2=cdata.matrix{x}(1:end,cdata.held);
cdata.curve2err=cdata.error{x}(1:end,cdata.held);
cdata.curveax=cdata.yvalues;
elseif cdata.dim==2
cdata.curve2=cdata.matrix{x}(cdata.held,1:end);
cdata.curve2err=cdata.error{x}(cdata.held,1:end);
cdata.curveax=cdata.xvalues;
end
hold on
areabar(cdata.curveax,cdata.curve1,cdata.curve1err,[.85 .85 .85],'Color',[0 0 0],'Marker','s','MarkerSize',6,'MarkerFaceColor',[0 0 0])
areabar(cdata.curveax,cdata.curve2,cdata.curve2err,[.9 .8 .8],'Color',[1 0 0],'Marker','o','MarkerSize',6,'MarkerFaceColor',[1 0 0])
hold on
plot(cdata.curveax,cdata.curve1,'Color',[0 0 0],'Marker','s','MarkerSize',6,'MarkerFaceColor',[0 0 0]);
hold on
plot(cdata.curveax,cdata.curve2,'Color',[1 0 0],'Marker','o','MarkerSize',6,'MarkerFaceColor',[1 0 0]);
hold off
legend(l{1},l{2},0)
statcurve=cdata.curve1-cdata.curve1err;
s=goodness(cdata.curve1,statcurve);
x=goodness(cdata.curve1,cdata.curve2);
title(['Goodness of Fit = ' num2str(x) '% (' num2str(s) '% significant)']);
r=cdata.curve1-cdata.curve2;
figure
box on
hold on
areabar(cdata.curveax,cdata.curve1,cdata.curve1err,[.85 .85 .85],'Color',[0 0 0],'Marker','s','MarkerSize',6,'MarkerFaceColor',[0 0 0])
areabar(cdata.curveax,cdata.curve2,cdata.curve2err,[.9 .8 .8],'Color',[1 0 0],'Marker','o','MarkerSize',6,'MarkerFaceColor',[1 0 0])
hold on
plot(cdata.curveax,cdata.curve1,'Color',[0 0 0],'Marker','s','MarkerSize',6,'MarkerFaceColor',[0 0 0]);
hold on
plot(cdata.curveax,cdata.curve2,'Color',[1 0 0],'Marker','o','MarkerSize',6,'MarkerFaceColor',[1 0 0]);
legend(l{1},l{2},0)
hold off
if cdata.control==1
a=find(cdata.title{1}=='/');
t=cdata.title{1}(1:a(2)-1);
end
if cdata.drug1==1
a=find(cdata.title{2}=='/');
t=[t ' | ' cdata.title{2}(a(2)-4:a(2)-1)];
end
if cdata.drug2==1
a=find(cdata.title{3}=='/');
t=[t ' | ' cdata.title{3}(a(2)-4:a(2)-1)];
end
if cdata.recovery==1
a=find(cdata.title{4}=='/');
t=[t ' | ' cdata.title{4}(a(2)-4:a(2)-1)];
end
a=find(cdata.title{1}=='[');
t=[t ' ' cdata.title{1}(a:end)];
if cdata.yvalues>1
String=get(gh('YMenu'),'String');
Value=get(gh('YMenu'),'Value');
t=[t ' {Y Variable = ' String(Value,:) '}'];
end
title(t)
cufitaxisfig
axes(gh('CurveAxis'))
hold on
areabar(cdata.curveax,cdata.curve1,cdata.curve1err,[.85 .85 .85],'Color',[0 0 0],'Marker','s','MarkerSize',6,'MarkerFaceColor',[0 0 0])
areabar(cdata.curveax,cdata.curve2,cdata.curve2err,[.9 .8 .8],'Color',[1 0 0],'Marker','o','MarkerSize',6,'MarkerFaceColor',[1 0 0])
hold on
plot(cdata.curveax,cdata.curve1,'Color',[0 0 0],'Marker','s','MarkerSize',6,'MarkerFaceColor',[0 0 0]);
hold on
plot(cdata.curveax,cdata.curve2,'Color',[1 0 0],'Marker','o','MarkerSize',6,'MarkerFaceColor',[1 0 0]);
legend(l{1},l{2},0)
hold off
statcurve=cdata.curve1-cdata.curve1err;
s=goodness(cdata.curve1,statcurve);
x=goodness(cdata.curve1,cdata.curve2);
title(['Goodness of Fit = ' num2str(x) '% (' num2str(s) '% significant)']);
ylabel('Firing Rate')
axes(gh('RAxis'))
area(cdata.curveax,r,'FaceColor',[0.5 0 0])
axis tight
ylabel('Residuals')
set(gh('CurveAxis'),'Tag','')
set(gh('RAxis'),'Tag','')
figure
a1=cdata.curve1-cdata.curve2;
a2=cdata.curve1-statcurve;
hold on
plot(cdata.curveax,a1,'ko-','MarkerFaceColor',[0 0 0]);
hold on
plot(cdata.curveax,a2,'ro-','MarkerFaceColor',[1 0 0]);
hold off
legend('Curve Residuals','Stats Residuals',0)
ylabel('Residuals (curve-curve or curve-stats curve)')
title('A plot of Residuals between Curves and Error Values')
legend(l{1},l{2},0)
case 'T-Test'
if data.numvars==1
if get(gh('CFNormalizeBox'),'Value')==1
x=get(gh('Curve1Menu'),'Value');
xx=get(gh('Curve1Menu'),'String');
xx=xx(x,:);
y=get(gh('Curve2Menu'),'Value');
yy=get(gh('Curve2Menu'),'String');
yy=yy(y,:);
a=cdata.matrix{x};
aerr=cdata.error{x};
b=cdata.matrix{y};
berr=cdata.error{y};
[h,p]=ttest((a-b),0);
%[h,p]=kstest2(a,b,0.05);
% [p,h]=signrank(a,b,0.05)
elseif get(gh('CFNormalizeBox'),'Value')==0
errordlg('Sorry, has to normalize the data first')
end
figure
areabar(cdata.xvalues, a, aerr,[.9 .8 .8],'Color',[1 0 0],'Marker','s','MarkerSize',6,'MarkerFaceColor',[1 0 0])
hold on
areabar(cdata.xvalues, b, berr,[.85 .85 .85],'Color',[0 0 0],'Marker','o','MarkerSize',6,'MarkerFaceColor',[0 0 0])
hold on
plot(cdata.xvalues, a, 'Color',[1 0 0],'Marker','s','MarkerSize',6,'MarkerFaceColor',[1 0 0])
hold on
plot(cdata.xvalues, b, 'Color',[0 0 0],'Marker','o','MarkerSize',6,'MarkerFaceColor',[0 0 0])
hold off
t=cdata.title{x};
t=t(:,1:18);
title(t);
legend(xx,yy,0)
if h==1
t1=['Paired T-Test Significance: p = ' sprintf('%0.5f',p) '(Significant)'];
gtext (t1);
elseif h==0
t1=['Paired T-Test Significance: p = ' sprintf('%0.5f',p) '(Not significant)'];
gtext (t1);
end
else data.numvars==2
if get(gh('CFNormalizeBox'),'Value')==1
w=get(gh('YMenu'),'Value');
ww=cdata.yvalues(w);
x=get(gh('Curve1Menu'),'Value');
xx=get(gh('Curve1Menu'),'String');
xx=xx(x,:);
y=get(gh('Curve2Menu'),'Value');
yy=get(gh('Curve2Menu'),'String');
yy=yy(y,:);
a=cdata.matrix{x};
a=a(w,:);
aerr=cdata.error{x};
aerr=aerr(w,:);
b=cdata.matrix{y};
b=b(w,:);
berr=cdata.error{y};
berr=berr(w,:);
[h,p]=ttest((a-b),0);
% [h,p]=kstest2(a,b,0.05);
% [p,h]=signrank(a,b,0.05)
elseif get(gh('CFNormalizeBox'),'Value')==0
errordlg('Sorry, has to normalize the data first')
end
figure
areabar(cdata.xvalues, a, aerr,[.9 .8 .8],'Color',[1 0 0],'Marker','s','MarkerSize',6,'MarkerFaceColor',[1 0 0])
hold on
areabar(cdata.xvalues, b, berr,[.85 .85 .85],'Color',[0 0 0],'Marker','o','MarkerSize',6,'MarkerFaceColor',[0 0 0])
hold on
plot(cdata.xvalues, a, 'Color',[1 0 0],'Marker','s','MarkerSize',6,'MarkerFaceColor',[1 0 0])
hold on
plot(cdata.xvalues, b, 'Color',[0 0 0],'Marker','o','MarkerSize',6,'MarkerFaceColor',[0 0 0])
hold off
t=cdata.title{x};
t=t(:,1:18);
yt=['----' data.ytitle ' ' sprintf('%0.5g',ww)];
t=[t yt];
title(t);
legend(xx,yy,0)
if h==1
t1=['Paired T-Test Significance: p = ' sprintf('%0.5f',p) '(Significant)'];
gtext (t1);
elseif h==0
t1=['Paired T-Test Significance: p = ' sprintf('%0.5f',p) '(Not significant)'];
gtext (t1);
end
end
%----------------------------------------------------------------------
case 'Subtraction'
wx=cdata.xvalues;
wy=cdata.yvalues;
%wtitle={controltitle drugtitle recoverytitle};
x=get(gh('Curve1Menu'),'Value');
xx=get(gh('Curve1Menu'),'String');
xx=xx(x,:);
y=get(gh('Curve2Menu'),'Value');
yy=get(gh('Curve2Menu'),'String');
yy=yy(y,:);
a=cdata.matrix{x};
b=cdata.matrix{y};
if y==3;
dd=a;
else
dd=b-a;
end
if get(gh('CFNormalizeBox'),'Value')==1
dd=dd./b;
end
pt=get(gh('PlotType'),'Value');
figure
if pt==1
ax=cdata.xvalues;
ay=cdata.yvalues;
%xlinear=ax;
%ylinear=ay;
zdata=dd;
imagesc(wx,wy,zdata);
axis auto
axis tight
set(gca,'YDir','normal');
xlabel('X Position');
ylabel('Y Position');
elseif pt==2
pcolor(wx,wy,dd);
shading interp
grid on
axis auto
axis tight
xlabel('X Position');
ylabel('Y Position');
end
fixfig
colorbar
if y==3;
TT=data.matrixtitle(1:13);
t=['------' xx];
TT=[TT t];
title(TT)
else
TT=data.matrixtitle(1:13);
t=[ '----' yy '-Subtract-' xx];
TT=[TT t];
title(TT)
end
val=get(gh('AxisBox'), 'Value'); % Check axes
if val == 1
if data.dim==0
axis auto
axis tight
axval=axis; %[-inf inf -inf inf];
set(gca,'CLimMode','auto')
cval=caxis;
else
axis auto
axis tight
axval=axis %[-inf inf -inf inf -inf inf];
set(gca,'CLimMode','auto')
cval=caxis;
end
z1=min(cval);
set(gh('ZTextMin'),'String',num2str(z1));
z2=max(cval);
set(gh('ZTextMax'),'String',num2str(z2));
else
xval=str2num(get(gh('XAxisEdit'),'String'));
yval=str2num(get(gh('YAxisEdit'),'String'));
zval=str2num(get(gh('ZAxisEditInput'),'String'));
if data.dim==0
axval=[xval yval];
cval=zval;
else
axval=[xval yval zval];
cval=zval;
end
axis(axval);
caxis(cval);
end
if data.xrange==data.yrange
axis square
end
set(gca,'FontSize',8)
colorbar
if get(gh('HotMap'),'Value')==1
colormap(hot)
end
save D:\Origin50\name.txt dd -ascii
dd
%-----------------------------------------------
%-----------------------------------------------------------------------
case 'Tuning Curves'
x=get(gh('HoldValue'),'Value');
if x==1
cdata.held=get(gh('XMenu'),'Value');
cdata.dim=1;
elseif x==2
cdata.held=get(gh('YMenu'),'Value');
cdata.dim=2;
end
tage=1;
if cdata.control==1 & (cdata.drug1==1|cdata.drug2==1) & cdata.recovery==1
if cdata.dim==1
cua=cdata.matrix{1}(1:end,cdata.held);
cuaerr=cdata.error{1}(1:end,cdata.held);
a=find(cdata.title{1}=='/');
t=cdata.title{1}(1:a(2)-1);
cax=cdata.yvalues;
if cdata.drug1==1
tage=2;
cub=cdata.matrix{2}(1:end,cdata.held);
cuberr=cdata.error{2}(1:end,cdata.held);
a=find(cdata.title{2}=='/');
t=[t '|' cdata.title{2}(a(2)-4:a(2)-1)];
end
if cdata.drug2==1
if tage==2
tage=4;
cuc=cdata.matrix{3}(1:end,cdata.held);
cucerr=cdata.error{3}(1:end,cdata.held);
a=find(cdata.title{3}=='/');
t=[t '|' cdata.title{3}(a(2)-4:a(2)-1)];
else
tage=3
cub=cdata.matrix{3}(1:end,cdata.held);
cuberr=cdata.error{3}(1:end,cdata.held);
a=find(cdata.title{3}=='/');
t=[t '|' cdata.title{3}(a(2)-4:a(2)-1)];
end
end
if cdata.recovery==1
if tage==2
cuc=cdata.matrix{4}(1:end,cdata.held);
cucerr=cdata.error{4}(1:end,cdata.held);
a=find(cdata.title{4}=='/');
t=[t '|' cdata.title{4}(a(2)-4:a(2)-1)];
elseif tage==3
cud=cdata.matrix{4}(1:end,cdata.held);
cuderr=cdata.error{4}(1:end,cdata.held);
a=find(cdata.title{4}=='/');
t=[t '|' cdata.title{4}(a(2)-4:a(2)-1)];
end
end
elseif cdata.dim==2
cua=cdata.matrix{1}(cdata.held,1:end);
cuaerr=cdata.error{1}(cdata.held,1:end);
cax=cdata.xvalues;
a=find(cdata.title{1}=='/');
t=cdata.title{1}(1:a(2)-1);
if cdata.drug1==1
tage=2;
cub=cdata.matrix{2}(cdata.held,1:end);
cuberr=cdata.error{2}(cdata.held,1:end);
a=find(cdata.title{2}=='/');
t=[t '|' cdata.title{2}(a(2)-4:a(2)-1)];
end
if cdata.drug2==1
if tage==2
tage=4;
cuc=cdata.matrix{3}(cdata.held,1:end);
cucerr=cdata.error{3}(cdata.held,1:end);
a=find(cdata.title{3}=='/');
t=[t '|' cdata.title{3}(a(2)-4:a(2)-1)];
else
tage=3
cub=cdata.matrix{3}(cdata.held,1:end);
cuberr=cdata.error{3}(cdata.held,1:end);
a=find(cdata.title{3}=='/');
t=[t '|' cdata.title{3}(a(2)-4:a(2)-1)];
end
end
if cdata.recovery==1
if tage==2 | tage==3
cuc=cdata.matrix{4}(cdata.held,1:end);
cucerr=cdata.error{4}(cdata.held,1:end);
a=find(cdata.title{4}=='/');
t=[t '|' cdata.title{4}(a(2)-4:a(2)-1)];
elseif tage==4
cud=cdata.matrix{4}(cdata.held,1:end);
cuderr=cdata.error{4}(cdata.held,1:end);
a=find(cdata.title{4}=='/');
t=[t '|' cdata.title{4}(a(2)-4:a(2)-1)];
end
end
end
end
a=find(cdata.title{1}=='[');
t=[t ' ' cdata.title{1}(a:end)];
if cdata.yvalues>1
String=get(gh('YMenu'),'String');
Value=get(gh('YMenu'),'Value');
t=[t ' {Y Variable = ' String(Value,:) '}'];
end
if get(gh('PropAxis'),'Value')==0
cax=1:length(cua);
end
figure
box on
if get(gh('AreaSelect'),'Value')==0;
if tage==2
hold on
errorbar(cax,cua,cuaerr,'k-')
hold on
plot(cax,cua,'ks','MarkerSize',8,'MarkerFaceColor',[0 0 0])
errorbar(cax,cuc,cucerr,'b-')
hold on
plot(cax,cuc,'bs','MarkerSize',6,'MarkerFaceColor',[0 0 1])
errorbar(cax,cub,cuberr,'r-')
hold on
plot(cax,cub,'ro','MarkerSize',7,'MarkerFaceColor',[1 0 0])
hold off
elseif tage==3
hold on
errorbar(cax,cua,cuaerr,'k-')
hold on
plot(cax,cua,'ks','MarkerSize',7,'MarkerFaceColor',[0 0 0])
errorbar(cax,cuc,cucerr,'b-')
hold on
plot(cax,cuc,'bs','MarkerSize',6,'MarkerFaceColor',[0 0 1])
errorbar(cax,cub,cuberr,'r-')
hold on
plot(cax,cub,'ro','MarkerSize',7,'MarkerFaceColor',[1 0 0])
hold off
elseif tage==4
hold on
errorbar(cax,cua,cuaerr,'k-')
hold on
plot(cax,cua,'ks','MarkerSize',7,'MarkerFaceColor',[0 0 0])
errorbar(cax,cud,cuderr,'b-')
hold on
plot(cax,cud,'bs','MarkerSize',6,'MarkerFaceColor',[0 0 1])
errorbar(cax,cub,cuberr,'r-')
hold on
plot(cax,cub,'ro','MarkerSize',7,'MarkerFaceColor',[1 0 0])
errorbar(cax,cuc,cucerr,'r-')
hold on
plot(cax,cuc,'ro','MarkerSize',6,'MarkerFaceColor',[1 1 1])
hold off
end
else
if tage==2
hold on
areabar(cax,cua,cuaerr,[.85 .85 .85],'Color',[0 0 0],'Marker','s','MarkerSize',8,'MarkerFaceColor',[0 0 0])
areabar(cax,cuc,cucerr,[.8 .8 .9],'Color',[0 0 .8],'Marker','o','MarkerSize',7,'MarkerFaceColor',[0 0 0.8])
areabar(cax,cub,cuberr,[.9 .8 .8],'Color',[1 0 0],'Marker','o','MarkerSize',6,'MarkerFaceColor',[1 0 0])
hold on
plot(cax,cua,'ks-','MarkerSize',8,'MarkerFaceColor',[0 0 0])
hold on
plot(cax,cuc,'bo-','MarkerSize',7,'MarkerFaceColor',[0 0 1])
hold on
plot(cax,cub,'ro-','MarkerSize',6,'MarkerFaceColor',[1 0 0])
legend('Control','Recovery','Drug1',0)
if get(gh('BurstTonicBox'),'Value')==1
legend('All spikes','Tonic','Burst',0)
end
hold off
elseif tage==3
hold on
areabar(cax,cua,cuaerr,[.85 .85 .85],'Color',[0 0 0],'Marker','s','MarkerSize',8,'MarkerFaceColor',[0 0 0])
areabar(cax,cuc,cucerr,[.8 .8 .9],'Color',[0 0 .8],'Marker','o','MarkerSize',7,'MarkerFaceColor',[0 0 0.8])
areabar(cax,cub,cuberr,[.9 .8 .8],'Color',[1 0 0],'Marker','o','MarkerSize',6,'MarkerFaceColor',[1 0 0])
hold on
plot(cax,cua,'ks-','MarkerSize',8,'MarkerFaceColor',[0 0 0])
hold on
plot(cax,cuc,'bo-','MarkerSize',7,'MarkerFaceColor',[0 0 1])
hold on
plot(cax,cub,'ro-','MarkerSize',6,'MarkerFaceColor',[1 0 0])
legend('Control','Recoveryt','Drug1',0)
hold off
elseif tage==4
hold on
areabar(cax,cua,cuaerr,[.85 .85 .85],'Color',[0 0 0],'Marker','s','MarkerSize',9,'MarkerFaceColor',[0 0 0])
areabar(cax,cud,cuderr,[.8 .8 .9],'Color',[0 0 .8],'Marker','o','MarkerSize',7.5,'MarkerFaceColor',[0 0 0.8])
areabar(cax,cub,cuberr,[.9 .8 .8],'Color',[1 0 0],'Marker','o','MarkerSize',6,'MarkerFaceColor',[1 0 0])
areabar(cax,cuc,cucerr,[.9 .8 .8],'Color',[1 0 0],'Marker','o','MarkerSize',6,'MarkerFaceColor',[1 1 1])