diff --git a/Docker/Dockerfile b/Docker/Dockerfile index 69516d0..9cddbf2 100644 --- a/Docker/Dockerfile +++ b/Docker/Dockerfile @@ -78,11 +78,6 @@ RUN cmake ../seqan -DSEQAN_BUILD_SYSTEM=APP:yara && \ ln -s /usr/local/bin/yara-build/bin/yara* /usr/local/bin/ WORKDIR /usr/local/bin/ -# Install Razers3 -# RUN wget --no-check-certificate http://packages.seqan.de/razers3/razers3-3.5.8-Linux-x86_64.tar.xz && \ -# tar xf razers3-3.5.8-Linux-x86_64.tar.xz && rm -f razers3-3.5.8-Linux-x86_64.tar.xz && \ -# ln -s /usr/local/bin/razers3-3.5.8-Linux-x86_64/bin/razers3 /usr/local/bin/razers3 - # Install samtools ADD https://github.com/samtools/samtools/releases/download/${samtools_version}/samtools-${samtools_version}.tar.bz2 /usr/local/bin/ @@ -93,13 +88,15 @@ RUN tar -xjf /usr/local/bin/samtools-${samtools_version}.tar.bz2 -C /usr/local/b # Install required python modules RUN python -m pip install --upgrade pip && \ python3 -m pip install --upgrade pip && \ - python -m pip install 'NumPy' && \ + python -m pip install 'NumPy==1.16.6' && \ + python -m pip install 'numexpr==2.7.0' && \ + python -m pip install 'six==1.16.0' && \ + python -m pip install 'tables==3.5.2' && \ python -m pip install 'Pyomo' && \ python -m pip install 'Pandas' && \ python -m pip install 'Pysam' && \ python -m pip install 'Matplotlib' && \ python -m pip install 'Future' && \ - python -m pip install 'tables' && \ python3 -m pip install 'keras==2.3' && \ python3 -m pip install 'setuptools==47.3.1' && \ python3 -m pip install 'Pandas' && \