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HMM-based CNV caller #1

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grst opened this issue Feb 3, 2021 · 2 comments
Open

HMM-based CNV caller #1

grst opened this issue Feb 3, 2021 · 2 comments

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@grst
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grst commented Feb 3, 2021

inferCNV uses a hidden markov model to turn the smoothed gene expression into genomic regions that are subject to CNV.

Would be nice to implement a similar feature here.
@grst grst mentioned this issue Oct 6, 2022
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@Liripo
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Liripo commented Jun 25, 2024

Hello:
This package performs very well, is there any progress on HMM?

@grst
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grst commented Jun 25, 2024

I'm happy to accept a pull request that enables some sort of segmentation, but I don't have the time to implement it myself.

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