Issues and bugs for later

[Neilmagi]

• Structural issues

• Not specific to any stocks, this error pops up every now and then, if you change selection and go back usually it disappear Warning: Error in .shallow: attempt to set index 0/0 in SET_VECTOR_ELT #259
  106: ICES_plot_2 [utilities_plotting.r#530]
  105: renderPlotly [D:\Profile\Documents\GitHub\online-advice\App/server.R#241]

• Automate the data update and app deployment #173

• Give more useful validation check messages in the quality of assessment plot panel, including names, for when figures are not included #258

• Quality of Assessment validation checks fail on radial and lollipop plots. e.g. bsf.27.nea; cod.27.7e-k; gfb.27.nea. Temporary errors/warnings pop up for ane.27.8 #257

• The app should show as default "catch time series" plot on Quality of Assessment Tab despite last having shown lollipop or radial plot on another stock #256

• Bugs

• cod.27.2.coastS, 2022 (norwegian sea) Biomass index plot not displaying correctly (https://ices-library.figshare.com/articles/report/Cod_Gadus_morhua_in_Subarea_2_between_62_N_and_67_N_Norwegian_Sea_southern_Norwegian_coastal_cod/21840822) #252

• ane.27.8 has NAs in SSB historical plot in 2020, 2019, 2018 #253

• sbr.27.10, 2022 (azores) Abundance index should have some data hidden, check sag settings. - currently the code filters years with NA values but these should be present but blank. However the filter is apparently necessary for some stocks. #254

• note that "quality of the assessment" looks very different in the app than in the advice for sol 27.7.d and would it be possible when one year do not have assessment not show that year in the legend (ex sole https://ices-taf.shinyapps.io/online-single-stock-advice/?assessmentkey=14317 for which SSB plot has 2 lines but 4 years in the legend) #255