This course addresses the basics of image analysis in Fiji/ImageJ. We will use an interactive approach to explore image filtering, simple segmentation, object measurements, and batch processing. We will conclude with a hands on activity. If time permits, then we will introduce attendees to tools necessary to start self-teaching Python-based image analysis.
Part 1, overview of images
Part 2, hands-on image basics
Part 3, binary images
Part 4, batch processing
- Pete Bankhead's very thorough ImageJ Intro
- https://datacarpentry.org/image-processing/
- Book: The Digital Cell