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lbfgsb.go
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// Copyright (c) 2014 Aubrey Barnard. This is free software. See
// LICENSE.txt for details.
// Go package that provides an interface to the Fortran implementation
// of the L-BFGS-B optimization algorithm. The Fortran code is provided
// as a C-compatible library and this is the Go API for that library.
// There is a sliver of C code (in lbfgsb_go_interface.*) needed to
// connect this Go package to the Fortran library.
package lbfgsb
// Declarations for Cgo
// Please note that originally go-lbfgs was compiled with a set of
// fortran-specific flags. We can use FFLAGS cgo directive to have an
// original set of flags:
// // #cgo FFLAGS: -fimplicit-none -finit-local-zero -fbounds-check
// But Cgo does not support FFLAGS yet (github issue #18975). Also
// introducing such a directive would break a compatibility with pre
// 1.7 version of Go. I think that everything should work properly
// with the defaul CGO compilation flags. If you run into issues you
// can use CGO_FFLAGS environment variable.
// #cgo LDFLAGS: -lgfortran -lquadmath -lm
// #include "lbfgsb_go_interface.h"
import "C"
import (
"fmt"
"math"
"reflect"
"sync"
"unsafe"
)
// Private constants
const (
// 3 or so 80-character lines
bufferSize = 250
)
// NewLbfgsb creates, initializes, and returns a new Lbfgsb solver
// object. Equivalent to 'new(Lbfgsb).Init(dimensionality)'. A
// zero-value Lbfgsb object is valid and needs no explicit construction.
// However, this constructor is convenient and explicit.
func NewLbfgsb(dimensionality int) *Lbfgsb {
return new(Lbfgsb).Init(dimensionality)
}
// Lbfgsb provides the functionality of the Fortran L-BFGS-B optimizer
// as a Go object. A Lbfgsb solver object contains the setup for an
// optimization problem of a particular dimensionality. It stores
// bounds, parameters, and results so it is relatively lightweight
// (especially if no bounds are specified). It can be re-used for other
// problems with the same dimensionality, but using a different solver
// object for each problem is probably better organization. A
// zero-value Lbfgsb object is valid and needs no explicit construction.
// A solver object will perform unconstrained optimization unless bounds
// are set.
type Lbfgsb struct {
// Dimensionality of the problem. Zero is an invalid
// dimensionality, so this also serves as an indicator of whether
// this object has been initialized for computation. Once the
// dimensionality has been set it cannot be changed. To be ready
// for computation the following must be greater than zero:
// dimensionality, approximationSize, fTolerance, gTolerance.
dimensionality int
// Problem specification. Bounds may be nil or allocated fully.
// Individual bounds may be omitted by placing NaNs or Infs.
lowerBounds []float64
upperBounds []float64
// Parameters
approximationSize int
fTolerance float64
gTolerance float64
printControl int
// Logging
logger OptimizationIterationLogger
// Statistics (do not embed or members will be public)
statistics OptimizationStatistics
}
// Init initializes this Lbfgsb solver for problems of the given
// dimensionality. Also sets default parameters that are not zero
// values. Returns this for method chaining. Ignores calls subsequent
// to the first (because a solver is intended for only a particular
// dimensionality).
func (lbfgsb *Lbfgsb) Init(dimensionality int) *Lbfgsb {
// Only initialize if not previously initialized
if lbfgsb.dimensionality == 0 {
// Check for a valid dimensionality
if dimensionality <= 0 {
panic(fmt.Errorf("Lbfgsb: Optimization problem dimensionality %d <= 0. Expected > 0.", dimensionality))
}
// Set up the solver. Protect previous values so Init can be
// called after other methods.
lbfgsb.dimensionality = dimensionality
if lbfgsb.approximationSize == 0 {
lbfgsb.approximationSize = 5
}
if lbfgsb.fTolerance == 0.0 {
lbfgsb.fTolerance = 1e-6
}
if lbfgsb.gTolerance == 0.0 {
lbfgsb.gTolerance = 1e-6
}
}
return lbfgsb
}
// SetBounds sets the upper and lower bounds on the individual
// dimensions to the given intervals resulting in a constrained
// optimization problem. Individual bounds may be (+/-)Inf.
func (lbfgsb *Lbfgsb) SetBounds(bounds [][2]float64) *Lbfgsb {
// Ensure object is initialized
lbfgsb.Init(len(bounds))
// Check dimensionality
if lbfgsb.dimensionality != len(bounds) {
panic(fmt.Errorf("Lbfgsb: Dimensionality of the bounds (%d) does not match the dimensionality of the solver (%d).", len(bounds), lbfgsb.dimensionality))
}
lbfgsb.lowerBounds = make([]float64, lbfgsb.dimensionality)
lbfgsb.upperBounds = make([]float64, lbfgsb.dimensionality)
for i, interval := range bounds {
lbfgsb.lowerBounds[i] = interval[0]
lbfgsb.upperBounds[i] = interval[1]
}
return lbfgsb
}
// SetBoundsAll sets the bounds of all the dimensions to [lower,upper].
// Init must be called first to set the dimensionality.
func (lbfgsb *Lbfgsb) SetBoundsAll(lower, upper float64) *Lbfgsb {
// Check object has been initialized
if lbfgsb.dimensionality == 0 {
panic(fmt.Errorf("Lbfgsb: Init() must be called before SetAllBounds()."))
}
lbfgsb.lowerBounds = make([]float64, lbfgsb.dimensionality)
lbfgsb.upperBounds = make([]float64, lbfgsb.dimensionality)
for i := 0; i < lbfgsb.dimensionality; i++ {
lbfgsb.lowerBounds[i] = lower
lbfgsb.upperBounds[i] = upper
}
return lbfgsb
}
// SetBoundsSparse sets the bounds to only those in the given map;
// others are unbounded. Each entry in the map is a (zero-based)
// dimension index mapped to a slice representing an interval.
// Individual bounds may be (+/-)Inf. Init must be called first to set
// the dimensionality.
//
// The slice is interpreted as an interval as follows:
//
// nil | []: [-Inf, +Inf]
// [x]: [-|x|, |x|]
// [l, u, ...]: [l, u]
func (lbfgsb *Lbfgsb) SetBoundsSparse(sparseBounds map[int][]float64) *Lbfgsb {
// Check object has been initialized
if lbfgsb.dimensionality == 0 {
panic(fmt.Errorf("Lbfgsb: Init() must be called before SetAllBounds()."))
}
// If no bounds are given, clear the bounds
if sparseBounds == nil || len(sparseBounds) == 0 {
return lbfgsb.ClearBounds()
}
lbfgsb.lowerBounds = make([]float64, lbfgsb.dimensionality)
lbfgsb.upperBounds = make([]float64, lbfgsb.dimensionality)
nInf := math.Inf(-1)
pInf := math.Inf(+1)
for i := 0; i < lbfgsb.dimensionality; i++ {
interval, exists := sparseBounds[i]
if exists {
if interval == nil || len(interval) == 0 {
lbfgsb.lowerBounds[i] = nInf
lbfgsb.upperBounds[i] = pInf
} else if len(interval) == 1 {
lbfgsb.upperBounds[i] = math.Abs(interval[0])
lbfgsb.lowerBounds[i] = -lbfgsb.upperBounds[i]
} else {
lbfgsb.lowerBounds[i] = interval[0]
lbfgsb.upperBounds[i] = interval[1]
}
} else {
lbfgsb.lowerBounds[i] = nInf
lbfgsb.upperBounds[i] = pInf
}
}
return lbfgsb
}
// ClearBounds clears all bounds resulting in an unconstrained
// optimization problem.
func (lbfgsb *Lbfgsb) ClearBounds() *Lbfgsb {
lbfgsb.lowerBounds = nil
lbfgsb.upperBounds = nil
return lbfgsb
}
// SetApproximationSize sets the amount of history (points and
// gradients) stored and used to approximate the inverse Hessian matrix.
// More history allows better approximation at the cost of more memory.
// The recommended range is [3,20]. Defaults to 5.
func (lbfgsb *Lbfgsb) SetApproximationSize(size int) *Lbfgsb {
if size <= 0 {
panic(fmt.Errorf("Lbfgsb: Approximation size %d <= 0. Expected > 0.", size))
}
lbfgsb.approximationSize = size
return lbfgsb
}
// SetFTolerance sets the tolerance of the precision of the objective
// function required for convergence. Defaults to 1e-6.
func (lbfgsb *Lbfgsb) SetFTolerance(fTolerance float64) *Lbfgsb {
if fTolerance <= 0.0 {
panic(fmt.Errorf("Lbfgsb: F tolerance %g <= 0. Expected > 0.", fTolerance))
}
lbfgsb.fTolerance = fTolerance
return lbfgsb
}
// SetGTolerance sets the tolerance of the precision of the objective
// gradient required for convergence. Defaults to 1e-6.
func (lbfgsb *Lbfgsb) SetGTolerance(gTolerance float64) *Lbfgsb {
if gTolerance <= 0.0 {
panic(fmt.Errorf("Lbfgsb: G tolerance %g <= 0. Expected > 0.", gTolerance))
}
lbfgsb.gTolerance = gTolerance
return lbfgsb
}
// SetFortranPrintControl sets the level of output verbosity from the
// Fortran L-BFGS-B code. Defaults to 0, no output. Ranges from 0 to
// 102: 1 displays a summary, 100 displays details of each iteration,
// 102 adds vectors (X and G) to the output.
func (lbfgsb *Lbfgsb) SetFortranPrintControl(verbosity int) *Lbfgsb {
if verbosity < 0 {
panic(fmt.Errorf("Lbfgsb: Print control %d < 0. Expected >= 0.", verbosity))
}
lbfgsb.printControl = verbosity
return lbfgsb
}
// SetLogger sets a logging function for the optimization that will be
// called after each iteration. May be nil, which disables logging.
// Defaults to nil.
func (lbfgsb *Lbfgsb) SetLogger(
logger OptimizationIterationLogger) *Lbfgsb {
lbfgsb.logger = logger
return lbfgsb
}
// Minimize optimizes the given objective using the L-BFGS-B algorithm.
// Implements OptimizationFunctionMinimizer.Minimize.
func (lbfgsb *Lbfgsb) Minimize(
objective FunctionWithGradient,
initialPoint []float64) (
minimum PointValueGradient,
exitStatus ExitStatus) {
// Make sure object has been initialized
lbfgsb.Init(len(initialPoint))
// Check dimensionality
dim := len(initialPoint)
dim_c := C.int(dim)
if lbfgsb.dimensionality != dim {
exitStatus.Code = USAGE_ERROR
exitStatus.Message = fmt.Sprintf("Lbfgsb: Dimensionality of the initial point (%d) does not match the dimensionality of the solver (%d).", dim, lbfgsb.dimensionality)
return
}
// Set up bounds control. Use a C-compatible type.
boundsControl := make([]C.int, dim)
if lbfgsb.lowerBounds != nil {
for index, bound := range lbfgsb.lowerBounds {
if !math.IsNaN(bound) && !math.IsInf(bound, -1) {
boundsControl[index] = C.int(1)
}
}
}
if lbfgsb.upperBounds != nil {
for index, bound := range lbfgsb.upperBounds {
if !math.IsNaN(bound) && !math.IsInf(bound, -1) {
// Map 0 -> 3, 1 -> 2
boundsControl[index] = C.int(3 - boundsControl[index])
}
}
}
// Set up lower and upper bounds. These must be different slices
// than the ones in the Lbfgsb object because those must remain
// unallocated if no bounds are specified.
lowerBounds := makeCCopySlice_Float(lbfgsb.lowerBounds, dim)
upperBounds := makeCCopySlice_Float(lbfgsb.upperBounds, dim)
// Set up callbacks for function, gradient, and logging
cId := registerCallback(objective)
defer unregisterCallback(cId)
callbackData_c := unsafe.Pointer(cId)
var doLogging_c C.int // false
var logFunctionCallbackData_c unsafe.Pointer // null
var loggerId uintptr
if lbfgsb.logger != nil {
doLogging_c = C.int(1) // true
loggerId = registerCallback(lbfgsb.logger)
defer unregisterCallback(loggerId)
logFunctionCallbackData_c = unsafe.Pointer(loggerId)
}
// Allocate arrays for return value
minimum.X = make([]float64, dim)
minimum.G = make([]float64, dim)
// Convert parameters for C
approximationSize_c := C.int(lbfgsb.approximationSize)
fTolerance_c := C.double(lbfgsb.fTolerance)
gTolerance_c := C.double(lbfgsb.gTolerance)
printControl_c := C.int(lbfgsb.printControl)
// Prepare buffers and arrays for C. Avoid allocation in C land by
// allocating compatible things in Go and passing their addresses.
// The following arrays may not be interoperably type-safe but this
// is how they did it on the Cgo page: http://golang.org/cmd/cgo/.
// (One could always allocate slices of C types, pass those, and
// then copy out and convert the contents on return.)
var boundsControl_c *C.int = &boundsControl[0]
var lowerBounds_c *C.double = &lowerBounds[0]
var upperBounds_c *C.double = &upperBounds[0]
var x0_c *C.double = (*C.double)(&initialPoint[0])
var minX_c *C.double = (*C.double)(&minimum.X[0])
var minF_c *C.double = (*C.double)(&minimum.F)
var minG_c *C.double = (*C.double)(&minimum.G[0])
var iters_c, evals_c C.int
// Status message
statusMessageLength_c := C.int(bufferSize)
var statusMessageBuffer [bufferSize]C.char
statusMessage_c := (*C.char)(&statusMessageBuffer[0])
// Call the actual L-BFGS-B procedure
statusCode_c := C.lbfgsb_minimize_c(
callbackData_c, dim_c,
boundsControl_c, lowerBounds_c, upperBounds_c,
approximationSize_c, fTolerance_c, gTolerance_c,
x0_c, minX_c, minF_c, minG_c, &iters_c, &evals_c,
printControl_c, doLogging_c, logFunctionCallbackData_c,
statusMessage_c, statusMessageLength_c,
)
// Convert outputs
// Exit status codes match between ExitStatusCode and the C enum
exitStatus.Code = ExitStatusCode(statusCode_c)
exitStatus.Message = C.GoString(statusMessage_c)
// Minimum already populated because pointers to its members were
// passed into C/Fortran
// Save statistics
lbfgsb.statistics.Iterations = int(iters_c)
lbfgsb.statistics.FunctionEvaluations = int(evals_c)
// Number of function and gradient evaluations is always the same
lbfgsb.statistics.GradientEvaluations = lbfgsb.statistics.FunctionEvaluations
return
}
// makeCCopySlice_Float creates a C copy of a Go slice. If the Go slice
// is nil, then a slice of the given length is created.
func makeCCopySlice_Float(slice []float64, sliceLen int) (
slice_c []C.double) {
slice_c = make([]C.double, sliceLen)
// Copy the Go slice to the C slice, converting elements
if slice != nil {
for i := 0; i < sliceLen; i++ {
slice_c[i] = C.double(slice[i])
}
}
return
}
// OptimizationStatistics returns some statistics about the most recent
// minimization: the total number of iterations and the total numbers of
// function and gradient evaluations.
func (lbfgsb *Lbfgsb) OptimizationStatistics() OptimizationStatistics {
return lbfgsb.statistics
}
// callbackFunctions is a container for the actual objective functions and
// related data.
var callbackFunctions = make(map[uintptr]interface{})
// callbackIndex stores an index to use for new callback function.
var callbackIndex uintptr
// callbackMutex is a mutex preventing simultanious access to callback
// and callbackIds.
var callbackMutex sync.Mutex
// registerCallback registers a new callback and returns its' index
// (>=1).
func registerCallback(f interface{}) uintptr {
callbackMutex.Lock()
defer callbackMutex.Unlock()
// We always increment callbackIndex to have more or less
// unique ids. This way it is easier to debug problems with
// reusing unregistered ids.
callbackIndex++
startIndex := callbackIndex
for callbackIndex == 0 || callbackFunctions[callbackIndex] != nil {
// Find the first free non-zero index.
callbackIndex++
// If the map is full, i.e. all non-zero uintptrs were
// used, we do not want to loop infinitely. We check
// if we already encountered the starting index. If
// so, we panic. In practice this is very unlikely to
// have this kind of problem since all the objects are
// unregistered at the end of the function call.
if callbackIndex == startIndex {
panic("no more space in the map to store a callback function")
}
}
callbackFunctions[callbackIndex] = f
return callbackIndex
}
// lookupCallback returns a callback function given an index.
func lookupCallback(i uintptr) interface{} {
callbackMutex.Lock()
defer callbackMutex.Unlock()
return callbackFunctions[i]
}
// unregisterCallback unregisters a callback by removing it from the
// callbackFunctions map.
func unregisterCallback(i uintptr) {
callbackMutex.Lock()
defer callbackMutex.Unlock()
delete(callbackFunctions, i)
}
// go_objective_function_callback is an adapter between the C callback
// and the Go callback for evaluating the objective function. Exported
// to C for use as a function pointer. Must match the signature of
// objective_function_type in lbfgsb_c.h.
//
//export go_objective_function_callback
func go_objective_function_callback(
dim_c C.int, point_c, value_c *C.double,
callbackData_c unsafe.Pointer,
statusMessage_c *C.char, statusMessageLength_c C.int) (
statusCode_c C.int) {
var point []float64
// Convert inputs
dim := int(dim_c)
wrapCArrayAsGoSlice_Float64(point_c, dim, &point)
objective := lookupCallback(uintptr(callbackData_c)).(FunctionWithGradient)
// Evaluate the objective function. Let panics propagate through
// C/Fortran.
value := objective.EvaluateFunction(point)
// Convert outputs
*value_c = C.double(value)
//fmt.Printf("go_objective_function_callback: %v; %v;\n", point, value)
return
}
// go_objective_gradient_callback is an adapter between the C callback
// and the Go callback for evaluating the objective gradient. Exported
// to C for use as a function pointer. Must match the signature of
// objective_gradient_type in lbfgsb_c.h.
//
//export go_objective_gradient_callback
func go_objective_gradient_callback(
dim_c C.int, point_c, gradient_c *C.double,
callbackData_c unsafe.Pointer,
statusMessage_c *C.char, statusMessageLength_c C.int) (
statusCode_c C.int) {
var point, gradient, gradRet []float64
// Convert inputs
dim := int(dim_c)
wrapCArrayAsGoSlice_Float64(point_c, dim, &point)
objective := lookupCallback(uintptr(callbackData_c)).(FunctionWithGradient)
// Evaluate the gradient of the objective function. Let panics
// propagate through C/Fortran.
gradRet = objective.EvaluateGradient(point)
// Convert outputs
wrapCArrayAsGoSlice_Float64(gradient_c, dim, &gradient)
copy(gradient, gradRet)
//fmt.Printf("go_objective_gradient_callback: %v; %v;\n", point, gradient)
return
}
// go_log_function_callback is an adapter between the C callback and the
// Go callback for logging information about each iteration. Exported
// to C for use as a function pointer. Must match the signature of
// lbfgsb_log_function_type in lbfgsb_c.h.
//
//export go_log_function_callback
func go_log_function_callback(
logCallbackData_c unsafe.Pointer,
iteration_c, fgEvals_c, fgEvalsTotal_c C.int, stepLength_c C.double,
dim_c C.int, x_c *C.double, f_c C.double, g_c *C.double,
fDelta_c, fDeltaBound_c, gNorm_c, gNormBound_c C.double) (
statusCode_c C.int) {
var x, g []float64
// Convert inputs
dim := int(dim_c)
wrapCArrayAsGoSlice_Float64(x_c, dim, &x)
wrapCArrayAsGoSlice_Float64(g_c, dim, &g)
// Get the logging function from the callback data
logger := lookupCallback(uintptr(logCallbackData_c)).(OptimizationIterationLogger)
// Call the logging function. Let panics propagate through
// C/Fortran.
logger(
&OptimizationIterationInformation{
Iteration: int(iteration_c),
FEvals: int(fgEvals_c),
GEvals: int(fgEvals_c),
FEvalsTotal: int(fgEvalsTotal_c),
GEvalsTotal: int(fgEvalsTotal_c),
StepLength: float64(stepLength_c),
X: x,
F: float64(f_c),
G: g,
FDelta: float64(fDelta_c),
FDeltaBound: float64(fDeltaBound_c),
GNorm: float64(gNorm_c),
GNormBound: float64(gNormBound_c),
})
return
}
// wrapCArrayAsGoSlice_Float64 allows a C array to be treated as a Go
// slice. Based on https://code.google.com/p/go-wiki/wiki/cgo. This
// only works if the Go and C types happen to be interoperable (binary
// compatible), but that seems to be the case so far.
func wrapCArrayAsGoSlice_Float64(array *C.double, length int,
slice *[]float64) {
sliceHeader := (*reflect.SliceHeader)(unsafe.Pointer(slice))
sliceHeader.Cap = length
sliceHeader.Len = length
sliceHeader.Data = uintptr(unsafe.Pointer(array))
}