From b6d66bbd92ef37f9e37efac7bc6eeda8cbf294a8 Mon Sep 17 00:00:00 2001 From: hongyuanjia Date: Tue, 12 Mar 2024 14:46:37 +0000 Subject: [PATCH] Built site for epwshiftr: 0.1.4@d9680b2 --- 404.html | 2 +- CODE_OF_CONDUCT.html | 2 +- CONTRIBUTING.html | 2 +- ISSUE_TEMPLATE.html | 2 +- LICENSE-text.html | 2 +- LICENSE.html | 2 +- PULL_REQUEST_TEMPLATE.html | 2 +- SUPPORT.html | 2 +- apple-touch-icon-120x120.png | Bin 13926 -> 13926 bytes apple-touch-icon-152x152.png | Bin 18119 -> 18119 bytes apple-touch-icon-180x180.png | Bin 21798 -> 21798 bytes apple-touch-icon-60x60.png | Bin 5780 -> 5780 bytes apple-touch-icon-76x76.png | Bin 7846 -> 7846 bytes apple-touch-icon.png | Bin 21798 -> 21798 bytes articles/cmip6_dict.html | 24 ++++++------ articles/index.html | 2 +- articles/paper.html | 2 +- authors.html | 2 +- favicon-16x16.png | Bin 1475 -> 1475 bytes favicon-32x32.png | Bin 2715 -> 2715 bytes index.html | 4 +- news/index.html | 12 +++--- pkgdown.yml | 2 +- reference/CMIP6Dict.html | 2 +- reference/EsgfQuery.html | 2 +- reference/epwshiftr-package.html | 2 +- reference/esgf_query.html | 2 +- reference/extract_data.html | 2 +- reference/future_epw.html | 2 +- reference/get_data_dir.html | 4 +- reference/get_data_node.html | 62 ++----------------------------- reference/index.html | 2 +- reference/init_cmip6_index.html | 2 +- reference/load_cmip6_index.html | 2 +- reference/match_coord.html | 2 +- reference/morphing_epw.html | 2 +- reference/set_cmip6_index.html | 2 +- reference/summary_database.html | 2 +- 38 files changed, 50 insertions(+), 106 deletions(-) diff --git a/404.html b/404.html index b5ecb6b..ae08898 100644 --- a/404.html +++ b/404.html @@ -39,7 +39,7 @@ epwshiftr - 0.1.3.9015 + 0.1.4 diff --git a/CODE_OF_CONDUCT.html b/CODE_OF_CONDUCT.html index b55de80..90a09fa 100644 --- a/CODE_OF_CONDUCT.html +++ b/CODE_OF_CONDUCT.html @@ -17,7 +17,7 @@ epwshiftr - 0.1.3.9015 + 0.1.4 diff --git a/CONTRIBUTING.html b/CONTRIBUTING.html index 35c45b0..4481077 100644 --- a/CONTRIBUTING.html +++ b/CONTRIBUTING.html @@ -17,7 +17,7 @@ epwshiftr - 0.1.3.9015 + 0.1.4 diff --git a/ISSUE_TEMPLATE.html b/ISSUE_TEMPLATE.html index 391b429..4e4a0ed 100644 --- a/ISSUE_TEMPLATE.html +++ b/ISSUE_TEMPLATE.html @@ -17,7 +17,7 @@ epwshiftr - 0.1.3.9015 + 0.1.4 diff --git a/LICENSE-text.html b/LICENSE-text.html index 1ca5b2f..b5b7257 100644 --- a/LICENSE-text.html +++ b/LICENSE-text.html @@ -17,7 +17,7 @@ epwshiftr - 0.1.3.9015 + 0.1.4 diff --git a/LICENSE.html b/LICENSE.html index 107cdec..24d0094 100644 --- a/LICENSE.html +++ b/LICENSE.html @@ -17,7 +17,7 @@ epwshiftr - 0.1.3.9015 + 0.1.4 diff --git a/PULL_REQUEST_TEMPLATE.html b/PULL_REQUEST_TEMPLATE.html index 219ead6..924d2e4 100644 --- a/PULL_REQUEST_TEMPLATE.html +++ b/PULL_REQUEST_TEMPLATE.html @@ -17,7 +17,7 @@ epwshiftr - 0.1.3.9015 + 0.1.4 diff --git a/SUPPORT.html b/SUPPORT.html index c2dcfc4..edca9b2 100644 --- a/SUPPORT.html +++ b/SUPPORT.html @@ -17,7 +17,7 @@ epwshiftr - 0.1.3.9015 + 0.1.4 diff --git a/apple-touch-icon-120x120.png b/apple-touch-icon-120x120.png index 21e257023feab46700238fe46a1c4a883022b13c..814e546c990fbe5d45b08e03f8ff635814b38eff 100644 GIT binary patch delta 93 zcmaEs^DJjV6$cNWuGMwkh=Pqx2Bxk?A%-SaCZ<-V7TN{|Rt5&mD(~VL7#LJbTq844UBaS(KURk40|;ByJ44UBaS(KV>vJTh(achh_TXMY^D diff --git a/apple-touch-icon-152x152.png b/apple-touch-icon-152x152.png index 896c153cbbd25e4ea0dfd45c792eb5bce19df8a7..202a133135b69d52ec36500de04db7f72cabf883 100644 GIT binary patch delta 71 zcmX@!%Xqw(aY7Xb51+2}0NHZZU!C8<`q`6-!cl?+A(Mkcxj#=3^+8k*OgSDL&%Bp(0>>K@zx diff --git a/apple-touch-icon-60x60.png b/apple-touch-icon-60x60.png index 637b2b989f2d6e0711b7a19d1ae21dfddcd3e53f..43ef6d526497cb5e8f152372780870fe557f78d3 100644 GIT binary patch delta 93 zcmbQDJ4JUw6$cNWuKCJ6DrYw~#fiEag&3MxnV4Fcnra&uSQ!{R`rJQ{fq_A_#5JNM jC9x#cDmOnRGp&-r$iT=%*T7iU5M9IMb>>QwRmJiFTi+X- delta 93 zcmbQDJ4JUw6$h69H+y}C+vAN*aiXpUA%)!ag8WR jNi0dV%FR#7OsixtGB7gHH89pSMAvY6;+Fc!s$%&70stE) diff --git a/apple-touch-icon-76x76.png b/apple-touch-icon-76x76.png index 07202f348fe0f5ace9a5eae8dffee7c1ab4d3f8c..d486dc76f31b2ec62b71127adaee00474ec48483 100644 GIT binary patch delta 93 zcmZ2xyUcb%6$cNWu7xGDWz5E=0$Eq15JM9y6H_ZwGi?I{D+7be(o>lk7#LJbTq844UBaS(KRe`)7?MWTrM8~uyz?w delta 93 zcmZ2xyUcb%6$h69H+y}C+vAN*1+uONA%)!ag8WR jNi0dV%FR#7OsixtGB7gHH89pSMAvY6;+Fc!=5qM}B1RjZ diff --git a/apple-touch-icon.png b/apple-touch-icon.png index 1b36ade56be2091224bb84b74c594cfc4bdc0804..d38bad60d02eaf9e0a4b63fcb990ba040ee73a5a 100644 GIT binary patch delta 95 zcmZ3sigDR0#tBs%JbZeLzS@tbZ*2My>}nKZXkukzW@TWgZD3$!V6Zh??iB+AgKCLu mL`h0wNvc(DeoAIqC4-THk%_K>v92Myh9hRn!X|GI$p-+VmmM~Ha2|-b~OkwG_x`^v@$f%HZZUv92MyhFf#G@+WT($p-+0LLE#1 diff --git a/articles/cmip6_dict.html b/articles/cmip6_dict.html index 276bee7..c17fc7c 100644 --- a/articles/cmip6_dict.html +++ b/articles/cmip6_dict.html @@ -40,7 +40,7 @@ epwshiftr - 0.1.3.9015 + 0.1.4 @@ -219,22 +219,22 @@

Fetch data of CVs and Data Requestdict$build() #> ⠙ Fetching CMIP6 Dictionary... #> ⠙ Fetching latest tag of CMIP6 CVs... -#> ✔ Fetched latest tag of CMIP6 CVs successfully. [469ms] +#> ✔ Fetched latest tag of CMIP6 CVs successfully. [280ms] #> #> ⠙ Fetching CMIP6 Dictionary...⠙ Downloading data of CMIP6 CVs []... -#> ⠹ Downloading data of CMIP6 CVs [CMIP6_grid_label.json]... -#> ✔ Downloaded data of CMIP6 CVs successfully. [3.4s] +#> ⠹ Downloading data of CMIP6 CVs [CMIP6_institution_id.json]... +#> ✔ Downloaded data of CMIP6 CVs successfully. [2.2s] #> #> ⠙ Fetching CMIP6 Dictionary...⠙ Fetching latest tag of CMIP6 DReq... -#> ✔ Fetched latest tag of CMIP6 DReq successfully. [437ms] +#> ✔ Fetched latest tag of CMIP6 DReq successfully. [269ms] #> #> ⠙ Fetching CMIP6 Dictionary...⠙ Downloading data of CMIP6 DReq... -#> ✔ Downloaded data of CMIP6 DReq successfully. [803ms] +#> ✔ Downloaded data of CMIP6 DReq successfully. [374ms] #> -#> ⠙ Fetching CMIP6 Dictionary...✔ Fetched CMIP6 Dictionary successfully at 2024-03-10 16:11:40.804871 [5.3s] +#> ⠙ Fetching CMIP6 Dictionary...✔ Fetched CMIP6 Dictionary successfully at 2024-03-12 14:46:31.315154 [3.4s] #> #> ══ CMIP6 Dictionary ════════════════════════════════════════════════════════════ -#> • Built at: 2024-03-10 16:11:40.804392 +#> • Built at: 2024-03-12 14:46:31.314679 #> #> ── Controlled Vocabularies (CVs) ─────────────────────────────────────────────── #> • CV Version: `6.2.58.63` @@ -275,7 +275,7 @@

Fetch data of CVs and Data Request
 last_built <- dict$built_time()
 last_built
-#> [1] "2024-03-10 16:11:40 UTC"
+#> [1] "2024-03-12 14:46:31 UTC"

The last modified time of the CV collection and each CV can be retrieved using the $timestamp() method:

@@ -897,7 +897,7 @@ 
Store and reuse the Cmip6Dic
 of the saved RDS file.

 
 dict$save(tempdir())
-#> [1] "/tmp/Rtmpfc3WkK/CMIP6DICT"

+#> [1] "/tmp/RtmpkD5QMG/CMIP6DICT"

This file can be reloaded via $load() method to restore the last state of current Cmip6Dict object. It reads the RDS file named CMIP6DICT and loads the CVs and Data Request @@ -905,9 +905,9 @@

Store and reuse the Cmip6Dic 
 new_dict <- cmip6_dict()
 new_dict$load(tempdir())
-#> ✔ Loaded CMIP6 Dictionary that was built at 2024-03-10 16:11:40.804392.
+#> ✔ Loaded CMIP6 Dictionary that was built at 2024-03-12 14:46:31.314679.
 #> ══ CMIP6 Dictionary ════════════════════════════════════════════════════════════
-#> • Built at: 2024-03-10 16:11:40.804392
+#> • Built at: 2024-03-12 14:46:31.314679
 #> 
 #> ── Controlled Vocabularies (CVs) ───────────────────────────────────────────────
 #> • CV Version: `6.2.58.63`
diff --git a/articles/index.html b/articles/index.html
index c118f93..cbcf80b 100644
--- a/articles/index.html
+++ b/articles/index.html
@@ -17,7 +17,7 @@
       
       
         epwshiftr
-        0.1.3.9015
+        0.1.4
diff --git a/articles/paper.html b/articles/paper.html index 997d53a..eb3b21d 100644 --- a/articles/paper.html +++ b/articles/paper.html @@ -40,7 +40,7 @@ epwshiftr - 0.1.3.9015 + 0.1.4 diff --git a/authors.html b/authors.html index 8fe6a0d..b4f649b 100644 --- a/authors.html +++ b/authors.html @@ -17,7 +17,7 @@ epwshiftr - 0.1.3.9015 + 0.1.4 diff --git a/favicon-16x16.png b/favicon-16x16.png index 311a2e35f3991424623547759c682f1552c7f577..86a4152721f8f588c44705aaa0568412238cacbe 100644 GIT binary patch delta 95 zcmX@ieVBX0Wo8Z@K0Qw74_Qk$-)1&pbTtYwG_f)v92MyhK?mmPfQMB%?ALLdmQ`# diff --git a/favicon-32x32.png b/favicon-32x32.png index 0b51e5e126154798ce965d927b8d0bf65867f15f..e8c49340a775a954db9a0338541d7dea5a9cab6a 100644 GIT binary patch delta 69 zcmbO&I$Lx?6$cNW9@nj(*76&hQaMG8LJUo;Ow6nd4YUmmtPBk9ZxcN*`8TI5hQzwp LYilO!aODF4<3Sa1 delta 69 zcmbO&I$Lx?6$h69x4@s>hgCK epwshiftr - 0.1.3.9015 + 0.1.4 @@ -1040,7 +1040,7 @@

License

Disclaimer

-

CMIP6 model data is licensed under a Creative Commons Attribution-ShareAlike 4.0 International License. Consult Terms of Use for terms of use governing CMIP6 output, including citation requirements and proper acknowledgment. Further information about each GCM output data, including some limitations, can be found via the further_info_url (recorded as a global attribute in the NetCDF file) and at EC-Earth. The data producers and data providers make no warranty, either express or implied, including, but not limited to, warranties of merchantability and fitness for a particular purpose. All liabilities arising from the supply of the information (including any liability arising in negligence) are excluded to the fullest extent permitted by law.

+

CMIP6 model data is licensed under a Creative Commons Attribution-ShareAlike 4.0 International License. Consult Terms of Use for terms of use governing CMIP6 output, including citation requirements and proper acknowledgment. Further information about each GCM output data, including some limitations, can be found via the further_info_url (recorded as a global attribute in the NetCDF file) and at EC-Earth. The data producers and data providers make no warranty, either express or implied, including, but not limited to, warranties of merchantability and fitness for a particular purpose. All liabilities arising from the supply of the information (including any liability arising in negligence) are excluded to the fullest extent permitted by law.

Contribute diff --git a/news/index.html b/news/index.html index 3b60c55..9dbb556 100644 --- a/news/index.html +++ b/news/index.html @@ -17,7 +17,7 @@ epwshiftr - 0.1.3.9015 + 0.1.4

@@ -64,9 +64,9 @@

Changelog

-

epwshiftr (development version)

+

epwshiftr 0.1.42024-03-12

-

Major changes

+

Major changes

  • match_coord() has been refactored to correct the calculation method of geographical distance. Previously, epwshiftr assumes that distance on longitude and latitude is the same which is not true. Now it uses a spheroid formula to calculate the tunnel distance (#39). For details, please see Tunnel Distance . The structure of the returned epw_cmip6_coord object has also changed. The coord column in the coord data.table is also a data.table which contains 6 columns describing the matched coordinates:

    • @@ -98,7 +98,7 @@

      Major changes

-

New features

+

New features

  • A new parameter full is added to future_epw(). When setting to TRUE, a data.table containing information about how the data are split by the by argument and also the generated future EPWs and their paths are returned (#18).
  • Now summary_database() can append results to the previous scan and detect if any previously matched NetCDF files do not exist. It stores the metadata of those missing files as a new attribute not_found in the results. Warnings are issued if warning is set to TRUE. Also, a new parameter miss has been added to control how to manage those invalid entries. You can set it to "keep", which is the default, to do nothing about it or "overwrite" to overwrite those entries based on the newly matched NetCDF files if possible (#40).
  • @@ -111,7 +111,7 @@

    New featuresNew class EsgfQuery is added to support more flexible APIs for ESGF search services. Please see ?EsgfQuery for details (#63, #69).

-

Bug fixes

+

Bug fixes

  • Fix the error in summary_database() when no NetCDF files are found in the input directory (#25).
  • Fix the error about overwriting temporary EPW file when epw in match_coord() is a search string (#25).
  • Now morphing_epw() can correctly fall back to use “Shift” method when any missing values are detected in maximum and minimum prediction values of climate variables (#25).
    • @@ -119,7 +119,7 @@

    Bug fixesget_data_node() works again (#80)

-

Internal refactor

+

Internal refactor

  • fields parameter is used to directly filter the ESGF query responses (#66).
  • Improve URL encoding (#62).
    • diff --git a/pkgdown.yml b/pkgdown.yml index 7e7cdd6..c639313 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -4,5 +4,5 @@ pkgdown_sha: ~ articles: cmip6_dict: cmip6_dict.html paper: paper.html -last_built: 2024-03-10T16:11Z +last_built: 2024-03-12T14:46Z diff --git a/reference/CMIP6Dict.html b/reference/CMIP6Dict.html index e73790f..5bc8de7 100644 --- a/reference/CMIP6Dict.html +++ b/reference/CMIP6Dict.html @@ -18,7 +18,7 @@ epwshiftr - 0.1.3.9015 + 0.1.4
diff --git a/reference/EsgfQuery.html b/reference/EsgfQuery.html index 5914fd3..ecfb1a7 100644 --- a/reference/EsgfQuery.html +++ b/reference/EsgfQuery.html @@ -24,7 +24,7 @@ epwshiftr - 0.1.3.9015 + 0.1.4
diff --git a/reference/epwshiftr-package.html b/reference/epwshiftr-package.html index d3a7ccf..d03640d 100644 --- a/reference/epwshiftr-package.html +++ b/reference/epwshiftr-package.html @@ -20,7 +20,7 @@ epwshiftr - 0.1.3.9015 + 0.1.4 diff --git a/reference/esgf_query.html b/reference/esgf_query.html index eaeec06..9f978cf 100644 --- a/reference/esgf_query.html +++ b/reference/esgf_query.html @@ -17,7 +17,7 @@ epwshiftr - 0.1.3.9015 + 0.1.4 diff --git a/reference/extract_data.html b/reference/extract_data.html index be884eb..5c9cf7a 100644 --- a/reference/extract_data.html +++ b/reference/extract_data.html @@ -19,7 +19,7 @@ epwshiftr - 0.1.3.9015 + 0.1.4 diff --git a/reference/future_epw.html b/reference/future_epw.html index 1a12754..64fa436 100644 --- a/reference/future_epw.html +++ b/reference/future_epw.html @@ -17,7 +17,7 @@ epwshiftr - 0.1.3.9015 + 0.1.4 diff --git a/reference/get_data_dir.html b/reference/get_data_dir.html index 12a72fa..7c946d3 100644 --- a/reference/get_data_dir.html +++ b/reference/get_data_dir.html @@ -18,7 +18,7 @@ epwshiftr - 0.1.3.9015 + 0.1.4 @@ -85,7 +85,7 @@

Value

Examples

options(epwshiftr.dir = tempdir())
 get_data_dir()
-#> [1] "/tmp/Rtmpit5ypk"
+#> [1] "/tmp/RtmpbqHcGd"
diff --git a/reference/get_data_node.html b/reference/get_data_node.html index cba75a3..5e554c3 100644 --- a/reference/get_data_node.html +++ b/reference/get_data_node.html @@ -17,7 +17,7 @@ epwshiftr - 0.1.3.9015 + 0.1.4 @@ -94,65 +94,9 @@

Value

Examples

- 
# \donttest{
+    
if (FALSE) {
 get_data_node()
-#>                     data_node status
-#>                        <char> <char>
-#>  1:             esgf2.dkrz.de     UP
-#>  2:     esgf-data1.diasjp.net     UP
-#>  3:    esgf-data03.diasjp.net     UP
-#>  4:     crd-esgf-drc.ec.gc.ca     UP
-#>  5:           cmip.fio.org.cn     UP
-#>  6:        esg-dn2.nsc.liu.se     UP
-#>  7:          cordexesg.dmi.dk     UP
-#>  8:    dpesgf03.nccs.nasa.gov     UP
-#>  9:   esgf.rcec.sinica.edu.tw     UP
-#> 10:            esg.camscma.cn     UP
-#> 11:               esgf.bsc.es     UP
-#> 12: cmip.dess.tsinghua.edu.cn     UP
-#> 13:        esgf-data.ucar.edu     UP
-#> 14:  dataserver.nccs.nasa.gov     UP
-#> 15:         vesg.ipsl.upmc.fr     UP
-#> 16:         esgf-node.cmcc.it     UP
-#> 17:        esgf-node2.cmcc.it     UP
-#> 18:     noresg.nird.sigma2.no     UP
-#> 19:           esgf.ceda.ac.uk     UP
-#> 20:            esg.lasg.ac.cn     UP
-#> 21:          esg1.umr-cnrm.fr     UP
-#> 22:   esgf-ictp.hpc.cineca.it     UP
-#> 23:           esgf.nci.org.au     UP
-#> 24:        esg-dn1.nsc.liu.se     UP
-#> 25:          esg2.umr-cnrm.fr     UP
-#> 26:        esgf-node.ornl.gov     UP
-#> 27:       esgf-data1.llnl.gov     UP
-#> 28:      data.meteo.unican.es     UP
-#> 29:    esgf-data02.diasjp.net     UP
-#> 30: esgf-nimscmip6.apcc21.org     UP
-#> 31:        esgf.nccs.nasa.gov     UP
-#> 32:       esgf-data2.llnl.gov     UP
-#> 33:   esg-cccr.tropmet.res.in     UP
-#> 34:        esg-dn3.nsc.liu.se     UP
-#> 35:               esgf.dwd.de     UP
-#> 36:           esgf.apcc21.org     UP
-#> 37:            aims3.llnl.gov     UP
-#> 38:    esgf-data04.diasjp.net     UP
-#> 39:    esgf-data01.diasjp.net     UP
-#> 40:    esgf-cnr.hpc.cineca.it   DOWN
-#> 41:              esgf.anl.gov   DOWN
-#> 42:     esgdata.gfdl.noaa.gov   DOWN
-#> 43:      dist.nmlab.snu.ac.kr   DOWN
-#> 44:        esg.pik-potsdam.de   DOWN
-#> 45:       eridanus.eoc.dlr.de   DOWN
-#> 46:          esg-dn1.ru.ac.th   DOWN
-#> 47:        polaris.pknu.ac.kr   DOWN
-#> 48:          esgf-data.csc.fi   DOWN
-#> 49:           dmiesgf0.dmi.dk   DOWN
-#> 50:           cmip.bcc.cma.cn   DOWN
-#> 51:             esgf.ichec.ie   DOWN
-#> 52:             esgf1.dkrz.de   DOWN
-#> 53:             esgf3.dkrz.de   DOWN
-#>                     data_node status
-# }
+}
diff --git a/reference/index.html b/reference/index.html index c83f56d..e38af79 100644 --- a/reference/index.html +++ b/reference/index.html @@ -17,7 +17,7 @@ epwshiftr - 0.1.3.9015 + 0.1.4
diff --git a/reference/init_cmip6_index.html b/reference/init_cmip6_index.html index 29a9b6f..931ad65 100644 --- a/reference/init_cmip6_index.html +++ b/reference/init_cmip6_index.html @@ -19,7 +19,7 @@ epwshiftr - 0.1.3.9015 + 0.1.4 diff --git a/reference/load_cmip6_index.html b/reference/load_cmip6_index.html index 6924db5..7231d05 100644 --- a/reference/load_cmip6_index.html +++ b/reference/load_cmip6_index.html @@ -17,7 +17,7 @@ epwshiftr - 0.1.3.9015 + 0.1.4 diff --git a/reference/match_coord.html b/reference/match_coord.html index 1061e44..1a3011a 100644 --- a/reference/match_coord.html +++ b/reference/match_coord.html @@ -19,7 +19,7 @@ epwshiftr - 0.1.3.9015 + 0.1.4 diff --git a/reference/morphing_epw.html b/reference/morphing_epw.html index a091b5c..3500d30 100644 --- a/reference/morphing_epw.html +++ b/reference/morphing_epw.html @@ -19,7 +19,7 @@ epwshiftr - 0.1.3.9015 + 0.1.4 diff --git a/reference/set_cmip6_index.html b/reference/set_cmip6_index.html index a83caaa..740b61b 100644 --- a/reference/set_cmip6_index.html +++ b/reference/set_cmip6_index.html @@ -18,7 +18,7 @@ epwshiftr - 0.1.3.9015 + 0.1.4 diff --git a/reference/summary_database.html b/reference/summary_database.html index ceeeea6..842dc19 100644 --- a/reference/summary_database.html +++ b/reference/summary_database.html @@ -20,7 +20,7 @@ epwshiftr - 0.1.3.9015 + 0.1.4