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bibliografia.bib
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@inproceedings{Fang,
author = {Fang, Jianbin and Sips, Henk and Zhang, LiLun and Xu, Chuanfu and Che, Yonggang and Varbanescu, Ana Lucia},
title = {Test-driving Intel Xeon Phi},
booktitle = {Proceedings of the 5th ACM/SPEC International Conference on Performance Engineering},
series = {ICPE '14},
year = {2014},
isbn = {978-1-4503-2733-6},
location = {Dublin, Ireland},
pages = {137--148},
numpages = {12},
url = {http://doi.acm.org/10.1145/2568088.2576799},
doi = {10.1145/2568088.2576799},
acmid = {2576799},
publisher = {ACM},
address = {New York, NY, USA},
keywords = {experience with xeon phi, microbenchmarking, optimization, performance analysis},
}
@INPROCEEDINGS{Pennycook,
author={Pennycook, S.J. and Hughes, C.J. and Smelyanskiy, M. and Jarvis, S.A},
booktitle={Parallel Distributed Processing (IPDPS), 2013 IEEE 27th International Symposium on},
title={Exploring SIMD for Molecular Dynamics, Using Intel \textregistered Xeon \texttrademark Processors and Intel \textregistered Xeon Phi \texttrademark Coprocessors},
year={2013},
month={May},
pages={1085-1097},
doi={10.1109/IPDPS.2013.44},
ISSN={1530-2075},
}
@book{HennessyPatterson,
author = {Hennessy, John L. and Patterson, David A.},
title = {Computer Architecture, Fifth Edition: A Quantitative Approach},
year = {2011},
isbn = {012383872X, 9780123838728},
edition = {5th},
publisher = {Morgan Kaufmann Publishers Inc.},
address = {San Francisco, CA, USA},
}
@misc{Top500XeonPhiJune2013,
title = {June 2014 List},
howpublished = {\url{http://www.top500.org/lists/2013/06/}},
note = {Accessed: 2014-08-22},
author= "Top500",
}
@misc{IntelMKLDoc,
title = {Intel Math Kernel Library Documentation},
howpublished = {\url{https://software.intel.com/en-us/node/522141}},
note = {Accessed: 2014-11-12},
author= {Intel Corporation},
}
@misc{XeonPhiArchArticle,
title = {Intel Xeon Phi Coprocessor - The Architecture},
howpublished = {\url{https://software.intel.com/en-us/articles/intel-xeon-phi-coprocessor-codename-knights-corner}},
note = {Accessed: 2014-10-14},
author= {George Chrysos},
}
@misc{AutovectorizationGuide,
title = {A Guide to Vectorization with Intel C++ Compilers},
howpublished = {\url{https://software.intel.com/sites/default/files/8c/a9/CompilerAutovectorizationGuide.pdf}},
note = {Accessed: 2014-11-04},
}
@book{Jeffers,
title={Intel Xeon Phi Coprocessor High Performance Programming},
author={Jeffers, James and Reinders, James},
year={2013},
publisher={Newnes}
}
@misc{Top500XeonPhiNov2013,
title = {June 2013 List},
howpublished = {\url{http://www.top500.org/lists/2013/11/}},
note = {Accessed: 2014-08-22},
author= "Top500",
}
@misc{Top500XeonPhiJune2014,
title = {November 2014 List},
howpublished = {\url{http://www.top500.org/lists/2014/06/}},
note = {Accessed: 2014-08-22},
author= "Top500",
}
@misc{Top500XeonPhiNov2014,
title = {November 2014 List},
howpublished = {\url{http://www.top500.org/lists/2014/11/}},
note = {Accessed: 2015-01-10},
author= "Top500",
}
@misc{Top500November2001,
title = {November 2001 List},
howpublished = {\url{http://www.top500.org/lists/2001/11/}},
note = {Accessed: 2014-08-22},
author= "Top500",
}
@article{Mielikainen,
author = {Mielikainen, Jarno and Huang, Bormin and Huang, Allen},
title = {Using Intel Xeon Phi to accelerate the WRF TEMF planetary boundary layer scheme},
journal = {Proc. SPIE},
volume = {9124},
pages = {91240T-91240T-10},
year = {2014},
doi = {10.1117/12.2055040},
URL = { http://dx.doi.org/10.1117/12.2055040},
eprint = {},
}
@book{NPCompleteness,
author = {Michael Randolph Garey and David S. Johnson},
title = {{Computers and Intractability: A Guide to the Theory of NP-Completeness}},
booktitle = {Artificial Evolution},
year = {1979},
publisher = {W. H. Freeman}
}
@article{FFDDemo,
year={1991},
issn={0168-9673},
journal={Acta Mathematicae Applicatae Sinica},
volume={7},
number={4},
doi={10.1007/BF02009683},
title={A simple proof of the inequality $FFD (L) \leq 11/9 OPT (L) + 1, \forall L$ for the FFD bin-packing algorithm},
url={http://dx.doi.org/10.1007/BF02009683},
publisher={Springer-Verlag},
author={Yue, Minyi},
pages={321-331},
language={English}
}
@book{Intel3B,
year={2014},
title={Intel 64 and IA-32 Architectures Software Developer's Manual, Volume 3B: System Programming Guide, Part 2},
publisher={Intel Corporation},
author={{Intel Corporation}},
volume={3},
}
@book{Cormen,
added-at = {2012-02-12T20:02:28.000+0100},
author = {Cormen, Thomas H. and Leiserson, Charles E. and Rivest, Ronald L. and Stein, Clifford},
biburl = {http://www.bibsonomy.org/bibtex/2225d42638921bee01b4ac8ff991b0a6a/pvortex3},
edition = 2,
interhash = {dcdeb0ec50a6798abf1724056982b543},
intrahash = {225d42638921bee01b4ac8ff991b0a6a},
keywords = {},
publisher = {The MIT Press},
title = {Introduction to Algorithms},
year = 2001
}
@techreport{IntelXeonPhiWhitePaper,
author = {Thiagarajan, S U and Congdon, C and Naik S and Nguyen L G},
institution = {Intel Corporation},
title = {Intel Xeon Phi Coprocessor Quick Start Developers Guide},
url = {https://software.intel.com/sites/default/files/article/335818/intel-xeon-phi-coprocessor-quick-start-developers-guide.pdf},
year = {2013}
}
@techreport{OpenMPIntel,
author = {Richard Gerber},
title = {Getting Started with OpenMP*},
institution = {Intel Corporation},
year = {2012},
}
@mastersthesis{TesisNitsche,
title={Aceleraci\'on de c\'alculos de estructura electr\'onica mediante el uso de Procesadores Gr\'aficos Programables.},
author={Nitsche, Matias A},
school={Universidad de Buenos Aires},
year=2009
}
@misc{XeonE78800Spec,
title = {Intel Xeon E7 8800 Specifications},
howpublished = {\url{http://ark.intel.com/products/53580/Intel-Xeon-Processor-E7-8870-30M-Cache-2_40-GHz-6_40-GTs-Intel-QPI}},
note = {Accessed: 2014-08-22},
author= {Intel},
}
@article{NvidiaTesla,
title={NVIDIA Tesla: A unified graphics and computing architecture},
author={Lindholm, Erik and Nickolls, John and Oberman, Stuart and Montrym, John},
journal={Ieee Micro},
volume={28},
number={2},
pages={39--55},
year={2008}
}
@techreport{NvidiaFermi,
author = "{Nvidia Corporation}",
title = "{NVIDIA's Next Generation CUDA Compute Architecture: Fermi}",
url = {http://www.nvidia.com/content/PDF/fermi_white_papers/NVIDIAFermiComputeArchitectureWhitepaper.pdf},
institution = "{Nvidia Corporation}",
year = 2009
}
@techreport{GlaskowskyFermi,
author = "{Peter Glaskowsky}",
title = "{NVIDIA's Fermi: The First Complete GPU Computing Architecture}",
url = {http://www.nvidia.com/content/PDF/fermi_white_papers/P.Glaskowsky_NVIDIAFermi-TheFirstCompleteGPUComputingArchitecture.pdf},
institution = "{Nvidia Corporation}",
year = 2009
}
@misc{NvidiaKepler,
author = {{NVIDIA}},
keywords = {cuda gpu},
publisher = {{NVIDIA}},
title = {Kepler {GK110} Whitepaper},
url = {http://www.nvidia.com/content/PDF/kepler/NVIDIA-Kepler-GK110-Architecture-Whitepaper.pdf},
year = 2012
}
@article{KohnSham,
title = {Self-Consistent Equations Including Exchange and Correlation Effects},
author = {Kohn, W. and Sham, L. J.},
journal = {Phys. Rev.},
volume = {140},
issue = {4A},
pages = {A1133--A1138},
numpages = {0},
year = {1965},
month = {Nov},
publisher = {American Physical Society},
doi = {10.1103/PhysRev.140.A1133},
url = {http://link.aps.org/doi/10.1103/PhysRev.140.A1133}
}
@article{Vosko,
author = {Vosko, S. H. and Wilk, L. and Nusair, M.},
title = {Accurate spin-dependent electron liquid correlation energies for local spin density calculations: a critical analysis},
journal = {Canadian Journal of Physics},
volume = {58},
number = {8},
pages = {1200-1211},
year = {1980},
doi = {10.1139/p80-159},
URL = {
http://dx.doi.org/10.1139/p80-159
},
eprint = {
http://dx.doi.org/10.1139/p80-159
}
}
@book{cudaHandbook,
title={The CUDA Handbook: A comprehensive guide to GPU Programming},
author={Wilt, Nicholas},
year={2013},
publisher={Pearson Education}
}
@article{thrust,
title={Thrust: A productivity-oriented library for CUDA},
author={Bell, Nathan and Hoberock, Jared},
journal={GPU Computing Gems},
volume={7},
year={2011},
publisher={chap}
}
@misc{NvidiaKeplerDatasheet,
author = {{NVIDIA}},
publisher = {{NVIDIA}},
title = {Kepler {GK110} Family},
url = {http://www.nvidia.com/content/tesla/pdf/NVIDIA-Tesla-Kepler-Family-Datasheet.pdf},
year = 2013
}
@manual{DatasheetXeonE52620,
author = {Intel},
title = {Intel Xeon Processor E5-2620 },
url = {http://ark.intel.com/products/64594/Intel-Xeon-Processor-E5-2620-15M-Cache-2_00-GHz-7_20-GTs-Intel-QPI}
}
@manual{OpenACCSpec,
title={OpenACC 2.0 Specification},
url={http://www.openacc.org/sites/default/files/OpenACC%202%200.pdf}
}
@manual{OpenMPSpec,
title={OpenMP 4.0 Specification},
url= {http://www.openmp.org/mp-documents/OpenMP4.0.0.pdf}
}
@article{cublas,
title={CUDA CUBLASlibrary},
author={Nvidia},
journal={NVIDIA Corporation, Santa Clara, California},
year={2008}
}
@article{cufft,
title={CUDA CUFFT library},
author={Nvidia},
journal={NVIDIA Corporation, Santa Clara, California},
year={2010},
}
@article{MooreLaw,
title={The end of the road for silicon?},
author={Schulz, Max},
journal={Nature},
volume={399},
number={6738},
pages={729--730},
year={1999},
publisher={Nature Publishing Group}
}
@article{HohenbergKohn,
title = {Inhomogeneous Electron Gas},
author = {Hohenberg, P. and Kohn, W.},
journal = {Phys. Rev.},
volume = {136},
issue = {3B},
pages = {B864--B871},
numpages = {0},
year = {1964},
month = {Nov},
publisher = {American Physical Society},
doi = {10.1103/PhysRev.136.B864},
url = {http://link.aps.org/doi/10.1103/PhysRev.136.B864}
}
@article{Lebedev2,
title = {Quadratures on a sphere },
journal = " USSR Computational Mathematics and Mathematical Physics",
volume = "16",
number = "2",
pages = "10 - 24",
year = "1976",
note = "",
issn = "0041-5553",
doi = "http://dx.doi.org/10.1016/0041-5553(76)90100-2",
url = "http://www.sciencedirect.com/science/article/pii/0041555376901002",
author = "V.I. Lebedev",
abstract = "METHODS for obtaining Gauss type quadratures, invariant under the octahedron rotation group with inversion, are described and investigated, while Gauss-type quadratures for n = 19, 23, and Chebyshev quadratures for n = 11, 15 are quoted. Error estimates are given. A Monte Carlo method with small dispersion is outlined. "
}
@article{Lebedev1,
title = "Values of the nodes and weights of ninth to seventeenth order gauss-markov quadrature formulae invariant under the octahedron group with inversion ",
journal = "USSR Computational Mathematics and Mathematical Physics ",
volume = "15",
number = "1",
pages = "44 - 51",
year = "1975",
note = "",
issn = "0041-5553",
doi = "http://dx.doi.org/10.1016/0041-5553(75)90133-0",
url = "http://www.sciencedirect.com/science/article/pii/0041555375901330",
author = "V.I. Lebedev",
abstract = "TABLES are given for the values of the nodes and weights of Gauss-Markov quadrature formulae for integration over the surface of a three-dimensional sphere, from 9-th up to and including the 17-th order, invariant under the octahedron group. "
}
@article{Becke,
author = "Becke, A. D.",
title = "A multicenter numerical integration scheme for polyatomic molecules",
journal = "The Journal of Chemical Physics",
year = "1988",
volume = "88",
number = "4",
pages = "2547-2553",
url = "http://scitation.aip.org/content/aip/journal/jcp/88/4/10.1063/1.454033",
doi = "http://dx.doi.org/10.1063/1.454033"
}
@article {Amber,
author = {Salomon-Ferrer, Romelia and Case, David A. and Walker, Ross C.},
title = {An overview of the Amber biomolecular simulation package},
journal = {Wiley Interdisciplinary Reviews: Computational Molecular Science},
volume = {3},
number = {2},
publisher = {John Wiley & Sons, Inc.},
issn = {1759-0884},
url = {http://dx.doi.org/10.1002/wcms.1121},
doi = {10.1002/wcms.1121},
pages = {198--210},
year = {2013},
}
@article{Yasuda,
author = {Yasuda, Koji},
title = {Accelerating Density Functional Calculations with Graphics Processing Unit},
journal = {Journal of Chemical Theory and Computation},
volume = {4},
number = {8},
pages = {1230-1236},
year = {2008},
doi = {10.1021/ct8001046},
URL = {http://pubs.acs.org/doi/abs/10.1021/ct8001046},
eprint = {http://pubs.acs.org/doi/pdf/10.1021/ct8001046}
}
@ARTICLE{Mark2003,
author = {Mark, William R. and Glanville, R. Steven and Akeley, Kurt and Kilgard, Mark J.},
title = {Cg: A System for Programming Graphics Hardware in a C-like Language},
journal = {ACM Trans. Graph.},
issue_date = {July 2003},
volume = {22},
number = {3},
month = jul,
year = {2003},
issn = {0730-0301},
pages = {896--907},
numpages = {12},
doi = {10.1145/882262.882362},
acmid = {882362},
publisher = {ACM},
address = {New York, NY, USA},
}
@phdthesis{Par4AllThesis,
TITLE = {{Source-to-Source Automatic Program Transformations for GPU-like Hardware Accelerators}},
AUTHOR = {Amini, Mehdi},
URL = {https://pastel.archives-ouvertes.fr/pastel-00958033},
NUMBER = {2012ENMP0105},
SCHOOL = {{Ecole Nationale Sup{\'e}rieure des Mines de Paris}},
YEAR = {2012},
MONTH = Dec,
KEYWORDS = {GPU ; CUDA ; OpenCL ; Automatic Parallelization ; Compilation},
TYPE = {Theses},
HAL_ID = {pastel-00958033},
HAL_VERSION = {v1},
}
@article{CetusPaper,
author = {Chirag Dave and Hansang Bae and Seung-Jai Min and Seyong Lee and Rudolf Eigenmann and Samuel Midkiff},
title = {Cetus: A Source-to-Source Compiler Infrastructure for Multicores},
journal ={Computer},
volume = {42},
number = {12},
issn = {0018-9162},
year = {2009},
pages = {36-42},
doi = {http://doi.ieeecomputersociety.org/10.1109/MC.2009.385},
publisher = {IEEE Computer Society},
address = {Los Alamitos, CA, USA},
}
@book{BookXeonPhi,
author = {Rahman, 78+{hgd<F4>700o09o9
}Rezaur},
title = {Intel Xeon Phi Coprocessor Architecture and Tools: The Guide for Application Developers},
year = {2013},
isbn = {1430259264, 9781430259268},
edition = {1st},
publisher = {Apress},
address = {Berkely, CA, USA},
}
@Misc{CudaOverview,
author = {Alan Tatourian},
title = {Nvidia GPU Architecture and Cuda Programming Environment},
year = {2013},
url = {http://tatourian.com/2013/09/03/nvidia-gpu-architecture-cuda-programming-environment},
lastchecked = {15/12/2014}
}
@TechReport{PattersonFermi,
author = {David Patterson},
title = {The top 10 innovations in the new NVIDIA Fermi architecture, and the top 3 next challenges},
url = {http://www.nvidia.com/content/pdf/fermi_white_papers/d.patterson_top10innovationsinnvidiafermi.pdf},
institution = {NVIDIA},
year = {2009},
}
@book{farberCuda,
title={CUDA application design and development},
author={Farber, Rob},
year={2011},
publisher={Elsevier}
}
@article{cudaReductions,
title={Optimizing parallel reduction in CUDA},
author={Harris, Mark and others},
journal={NVIDIA Developer Technology},
volume={2},
number={4},
year={2007},
publisher={Nvidia Corporation Santa Clara, CA, USA}
}
@inproceedings{Demystifying,
title={Demystifying GPU microarchitecture through microbenchmarking},
author={Wong, Henry and Papadopoulou, M-M and Sadooghi-Alvandi, Maryam and Moshovos, Andreas},
booktitle={Performance Analysis of Systems \& Software (ISPASS), 2010 IEEE International Symposium on},
pages={235--246},
year={2010},
organization={IEEE}
}
@techreport{cudaProgrammingGuide,
author = "Nvidia",
title = "CUDA Programming guide",
institution = "Nvidia",
year = "2015",
}
@article{Stratmann,
title = "Achieving linear scaling in exchange-correlation density functional quadratures ",
journal = "Chemical Physics Letters",
volume = "257",
number = "3--4",
pages = "213 - 223",
year = "1996",
note = "",
issn = "0009-2614",
doi = "10.1016/0009-2614(96)00600-8",
url = "http://www.sciencedirect.com/science/article/pii/0009261496006008",
author = "R.Eric Stratmann and Gustavo E. Scuseria and Michael J. Frisch"
}
@MISC{LinuxDocumentation,
title = {\texttt{clock\_getres()} manual documentation},
author = {OpenGroup},
url = {http://pubs.opengroup.org/onlinepubs/009695399/functions/clock_getres.html},
year = {2004},
}
@book{Marsden,
title={Vector Calculus},
author={Marsden, J.E. and Tromba, A.},
isbn={9780716749929},
lccn={2003049184},
url={http://books.google.com.ar/books?id=LiRLJf2m\_dwC},
year={2003},
publisher={W. H. Freeman}
}