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md.bib~
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*********** PAPER VIEJOS DE DINAMICA MOLECULAR *********8
@article{mccamm0n1977dynamics,
title={Dynamics of folded proteins},
author={McCamm0n, J Andrew},
journal={Nature},
volume={267},
pages={16},
year={1977}
}
@article{piana2014assessing,
title={Assessing the accuracy of physical models used in protein-folding simulations: quantitative evidence from long molecular dynamics simulations},
author={Piana, Stefano and Klepeis, John L and Shaw, David E},
journal={Current opinion in structural biology},
volume={24},
pages={98--105},
year={2014},
publisher={Elsevier}
}
@article{stone2010gpu,
title={GPU-accelerated molecular modeling coming of age},
author={Stone, John E and Hardy, David J and Ufimtsev, Ivan S and Schulten, Klaus},
journal={Journal of Molecular Graphics and Modelling},
volume={29},
number={2},
pages={116--125},
year={2010},
publisher={Elsevier}
}
@article{senn2009qm,
title={QM/MM methods for biomolecular systems},
author={Senn, Hans Martin and Thiel, Walter},
journal={Angewandte Chemie International Edition},
volume={48},
number={7},
pages={1198--1229},
year={2009},
publisher={Wiley Online Library}
}
@article{noid2013perspective,
title={Perspective: coarse-grained models for biomolecular systems},
author={Noid, WG},
journal={The Journal of chemical physics},
volume={139},
number={9},
pages={090901},
year={2013},
publisher={AIP Publishing}
}
@article{friedrichs2009accelerating,
title={Accelerating molecular dynamic simulation on graphics processing units},
author={Friedrichs, Mark S and Eastman, Peter and Vaidyanathan, Vishal and Houston, Mike and Legrand, Scott and Beberg, Adam L and Ensign, Daniel L and Bruns, Christopher M and Pande, Vijay S},
journal={Journal of computational chemistry},
volume={30},
number={6},
pages={864--872},
year={2009},
publisher={Wiley Online Library}
}
@article{tsui2000theory,
title={Theory and applications of the generalized Born solvation model in macromolecular simulations},
author={Tsui, Vickie and Case, David A},
journal={Biopolymers},
volume={56},
number={4},
pages={275--291},
year={2000},
publisher={Wiley Online Library}
}
@article{gotz2012routine,
title={Routine microsecond molecular dynamics simulations with AMBER on GPUs. 1. Generalized born},
author={G{\"o}tz, Andreas W and Williamson, Mark J and Xu, Dong and Poole, Duncan and Le Grand, Scott and Walker, Ross C},
journal={Journal of chemical theory and computation},
volume={8},
number={5},
pages={1542--1555},
year={2012},
publisher={ACS Publications}
}
@article{salomon2013routine,
title={Routine microsecond molecular dynamics simulations with AMBER on GPUs. 2. Explicit solvent particle mesh Ewald},
author={Salomon-Ferrer, Romelia and G{\"o}tz, Andreas W and Poole, Duncan and Le Grand, Scott and Walker, Ross C},
journal={Journal of Chemical Theory and Computation},
volume={9},
number={9},
pages={3878--3888},
year={2013},
publisher={ACS Publications}
}
@article{le2013spfp,
title={SPFP: Speed without compromise—A mixed precision model for GPU accelerated molecular dynamics simulations},
author={Le Grand, Scott and G{\"o}tz, Andreas W and Walker, Ross C},
journal={Computer Physics Communications},
volume={184},
number={2},
pages={374--380},
year={2013},
publisher={Elsevier}
}