New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

DeepVariant GPU version #351

Open

3 tasks done

KilianIlius opened this issue Feb 27, 2025 · 1 comment

Assignees

Collaborator

KilianIlius commented Feb 27, 2025 •

edited

Loading

Build working DeepVariant GPU container
Test performance of GPU version
Add gpu option to analyze.php and multisample.php

KilianIlius self-assigned this

Collaborator Author

KilianIlius commented Mar 25, 2025 •

edited

Loading

Runtime/memory DeepVariant (variant calling on NA12878x3_23 WES):

GPU			CPU
Threads	Runtime	RAM	Threads	Runtime	RAM
1	02:12:18	9.24 GB	1	03:53:00	9.11 GB
5	00:29:16	9.51 GB	5	01:11:00	9.32 GB
10	00:16:39	9.64 GB	10	00:41:00	9.46 GB

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment