Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

CnvReferenceCohort: Mean correlation #584

Open
leonschuetz opened this issue Oct 16, 2024 · 1 comment
Open

CnvReferenceCohort: Mean correlation #584

leonschuetz opened this issue Oct 16, 2024 · 1 comment

Comments

@leonschuetz
Copy link
Collaborator

Mean correlation calculation fails if one coverage file returns nan for correlation.

leads to pipeline crash since mean correlation will not writen to CNV file and TsvToQC fails:
Exception: Input line with more/less than two parts: 'QC:2000114'

Example: 23006a003-PCR5_01 (sample has no reads, so correlation is nan (removed from coverage folder as quick fix))

@marc-sturm
Copy link
Member

should be fixed with e3e4d6d

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants