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Seeded watersheds implementation for grayscale and affinity images #48

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hanslovsky opened this issue Jan 11, 2018 · 2 comments
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@hanslovsky
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I have an implementation of the seeded watersheds transform at
https://github.com/hanslovsky/imglib2-algorithm/tree/watersheds-cleanup
comparison with master
The code is pretty clean and documentation will be added before a potential pull request. Right now, I have two concerns:

  • Added dependency for primitive type queues:
<groupId>it.unimi.dsi</groupId>
<artifactId>fastutil</artifactId>
<version>7.0.12</version>
</dependency>

Please comment on the added dependency issue and feel free to discuss the need for watersheds on unbounded RandomAccessible.

@ctrueden
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/cc @gselzer

@hanslovsky
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hanslovsky commented Jan 29, 2019

FWIW I have an undocumented seeded watershed implementation in saalfeldlab/label-utilities that is also available on the imagej maven repo.

This also means that I will probably not work on adding the seeded watersheds into imglib2-algorithm.

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