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I have an implementation of the seeded watersheds transform at https://github.com/hanslovsky/imglib2-algorithm/tree/watersheds-cleanup comparison with master The code is pretty clean and documentation will be added before a potential pull request. Right now, I have two concerns:
<groupId>it.unimi.dsi</groupId> <artifactId>fastutil</artifactId> <version>7.0.12</version> </dependency>
RandomAccessibleInterval
RandomAccessible
CellRandomAccessible
LazyCellImg
Please comment on the added dependency issue and feel free to discuss the need for watersheds on unbounded RandomAccessible.
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/cc @gselzer
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FWIW I have an undocumented seeded watershed implementation in saalfeldlab/label-utilities that is also available on the imagej maven repo.
This also means that I will probably not work on adding the seeded watersheds into imglib2-algorithm.
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I have an implementation of the seeded watersheds transform at
https://github.com/hanslovsky/imglib2-algorithm/tree/watersheds-cleanup
comparison with master
The code is pretty clean and documentation will be added before a potential pull request. Right now, I have two concerns:
RandomAccessibleInterval
. This could be relaxed to be aRandomAccessible
. However, that would require a dynamically growingRandomAccessible
similar to [GrowingStoreRandomAccessibleSingletonAccess in BigCAT](https://github.com/saalfeldlab/bigcat/blob/ead30af10ea3cd8e56ca784401e7630d63773753/src/main/java/bdv/img/GrowingStoreRandomAccessibleSingletonAccess.java) or a
CellRandomAccessible
in the style of aLazyCellImg
that only populates cells on request.Please comment on the added dependency issue and feel free to discuss the need for watersheds on unbounded
RandomAccessible
.The text was updated successfully, but these errors were encountered: