installation issues

[vappiah]

Hi Developers,
I tried installing harmony on an Ubuntu Machine and I got this error below. Please advice.

In function ‘arma::vec find_lambda_cpp(const vec&, const vec&, const std::vector<int, std::allocator >&)’:
utils.cpp:127:29: error: ‘value’ is not a member of ‘arma::fill’
B_vec[b], arma::fill::value(lambda_dym));

[pati-ni]

Hi @vappiah,
Can you post the whole build log of the error you are posting and the sessionInfo()?

[vappiah]

Hi @pati-ni
Here is the build log

g++ -std=gnu++11 -I"/software/R-3.6.3/lib/R/include" -DNDEBUG -I"/software/R-3.6.3/lib/R/library/Rcpp/include" -I"/software/R-3.6.3/lib/R/library/RcppArmadillo/include" -I"/software/R-3.6.3/lib/R/library/RcppProgress/include" -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/software/R-3.6.3/lib/R/include" -DNDEBUG -I"/software/R-3.6.3/lib/R/library/Rcpp/include" -I"/software/R-3.6.3/lib/R/library/RcppArmadillo/include" -I"/software/R-3.6.3/lib/R/library/RcppProgress/include" -I/usr/local/include -fpic -g -O2 -c harmony.cpp -o harmony.o
g++ -std=gnu++11 -I"/software/R-3.6.3/lib/R/include" -DNDEBUG -I"/software/R-3.6.3/lib/R/library/Rcpp/include" -I"/software/R-3.6.3/lib/R/library/RcppArmadillo/include" -I"/software/R-3.6.3/lib/R/library/RcppProgress/include" -I/usr/local/include -fpic -g -O2 -c timer.cpp -o timer.o
g++ -std=gnu++11 -I"/software/R-3.6.3/lib/R/include" -DNDEBUG -I"/software/R-3.6.3/lib/R/library/Rcpp/include" -I"/software/R-3.6.3/lib/R/library/RcppArmadillo/include" -I"/software/R-3.6.3/lib/R/library/RcppProgress/include" -I/usr/local/include -fpic -g -O2 -c utils.cpp -o utils.o
utils.cpp: In function ‘arma::vec find_lambda_cpp(const vec&, const vec&, const std::vector<int, std::allocator >&)’:
utils.cpp:127:29: error: ‘value’ is not a member of ‘arma::fill’
B_vec[b], arma::fill::value(lambda_dym));
^~~~~
/software/R-3.6.3/lib/R/etc/Makeconf:175: recipe for target 'utils.o' failed
make: *** [utils.o] Error 1
ERROR: compilation failed for package ‘harmony’
removing ‘/software/R-3.6.3/lib/R/library/harmony’

The downloaded source packages are in
‘/tmp/RtmpCv3jto/downloaded_packages’
Updating HTML index of packages in '.Library'
Making 'packages.html' ... done
Warning message:
In install.packages("harmony") :
installation of package ‘harmony’ had non-zero exit status

[pati-ni]

Hi @vappiah,

Thanks! So what I would ask is it to check how old your armadillo is..

Can you post the following output?

library(RcppArmadillo)
sessionInfo()