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TSFProto_pb2.py
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TSFProto_pb2.py
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# Generated by the protocol buffer compiler. DO NOT EDIT!
# source: TSFProto.proto
import sys
_b=sys.version_info[0]<3 and (lambda x:x) or (lambda x:x.encode('latin1'))
from google.protobuf.internal import enum_type_wrapper
from google.protobuf import descriptor as _descriptor
from google.protobuf import message as _message
from google.protobuf import reflection as _reflection
from google.protobuf import symbol_database as _symbol_database
from google.protobuf import descriptor_pb2
# @@protoc_insertion_point(imports)
_sym_db = _symbol_database.Default()
DESCRIPTOR = _descriptor.FileDescriptor(
name='TSFProto.proto',
package='TSF',
serialized_pb=_b('\n\x0eTSFProto.proto\x12\x03TSF\"\x92\x03\n\x08SpotList\x12\x19\n\x0e\x61pplication_id\x18\x01 \x02(\x05:\x01\x31\x12\x0c\n\x04name\x18\x02 \x01(\t\x12\x10\n\x08\x66ilepath\x18\x03 \x01(\t\x12\x0b\n\x03uid\x18\x04 \x01(\x03\x12\x13\n\x0bnr_pixels_x\x18\x05 \x01(\x05\x12\x13\n\x0bnr_pixels_y\x18\x06 \x01(\x05\x12\x12\n\npixel_size\x18\x07 \x01(\x02\x12\x10\n\x08nr_spots\x18\x08 \x01(\x03\x12\x10\n\x08\x62ox_size\x18\x11 \x01(\x05\x12\x13\n\x0bnr_channels\x18\x12 \x01(\x05\x12\x11\n\tnr_frames\x18\x13 \x01(\x05\x12\x11\n\tnr_slices\x18\x14 \x01(\x05\x12\x0e\n\x06nr_pos\x18\x15 \x01(\x05\x12*\n\x0elocation_units\x18\x16 \x01(\x0e\x32\x12.TSF.LocationUnits\x12,\n\x0fintensity_units\x18\x17 \x01(\x0e\x32\x13.TSF.IntensityUnits\x12\x1e\n\x08\x66it_mode\x18\x18 \x01(\x0e\x32\x0c.TSF.FitMode\x12\x17\n\x08is_track\x18\x19 \x01(\x08:\x05\x66\x61lse\"\xd8\x03\n\x04Spot\x12\x10\n\x08molecule\x18\x01 \x02(\x05\x12\x0f\n\x07\x63hannel\x18\x02 \x02(\x05\x12\r\n\x05\x66rame\x18\x03 \x02(\x05\x12\r\n\x05slice\x18\x04 \x01(\x05\x12\x0b\n\x03pos\x18\x05 \x01(\x05\x12*\n\x0elocation_units\x18\x11 \x01(\x0e\x32\x12.TSF.LocationUnits\x12\t\n\x01x\x18\x07 \x02(\x02\x12\t\n\x01y\x18\x08 \x02(\x02\x12\t\n\x01z\x18\t \x01(\x02\x12,\n\x0fintensity_units\x18\x12 \x01(\x0e\x32\x13.TSF.IntensityUnits\x12\x11\n\tintensity\x18\n \x02(\x02\x12\x12\n\nbackground\x18\x0b \x01(\x02\x12\r\n\x05width\x18\x0c \x01(\x02\x12\t\n\x01\x61\x18\r \x01(\x02\x12\r\n\x05theta\x18\x0e \x01(\x02\x12\x0c\n\x04\x66lag\x18\x06 \x01(\x05\x12\x12\n\nx_original\x18\x65 \x01(\x02\x12\x12\n\ny_original\x18\x66 \x01(\x02\x12\x12\n\nz_original\x18g \x01(\x02\x12\x13\n\x0bx_precision\x18h \x01(\x02\x12\x13\n\x0by_precision\x18i \x01(\x02\x12\x13\n\x0bz_precision\x18j \x01(\x02\x12\x12\n\nx_position\x18k \x01(\x05\x12\x12\n\ny_position\x18l \x01(\x05*\x06\x08\xdc\x0b\x10\x80\x10*8\n\x07\x46itMode\x12\x0b\n\x07ONEAXIS\x10\x00\x12\x0b\n\x07TWOAXIS\x10\x01\x12\x13\n\x0fTWOAXISANDTHETA\x10\x02*)\n\x0eIntensityUnits\x12\n\n\x06\x43OUNTS\x10\x00\x12\x0b\n\x07PHOTONS\x10\x01*+\n\rLocationUnits\x12\x06\n\x02NM\x10\x00\x12\x06\n\x02UM\x10\x01\x12\n\n\x06PIXELS\x10\x02\x42!\n\x0c\x65\x64u.ucsf.tsfB\x11TaggedSpotsProtos')
)
_sym_db.RegisterFileDescriptor(DESCRIPTOR)
_FITMODE = _descriptor.EnumDescriptor(
name='FitMode',
full_name='TSF.FitMode',
filename=None,
file=DESCRIPTOR,
values=[
_descriptor.EnumValueDescriptor(
name='ONEAXIS', index=0, number=0,
options=None,
type=None),
_descriptor.EnumValueDescriptor(
name='TWOAXIS', index=1, number=1,
options=None,
type=None),
_descriptor.EnumValueDescriptor(
name='TWOAXISANDTHETA', index=2, number=2,
options=None,
type=None),
],
containing_type=None,
options=None,
serialized_start=903,
serialized_end=959,
)
_sym_db.RegisterEnumDescriptor(_FITMODE)
FitMode = enum_type_wrapper.EnumTypeWrapper(_FITMODE)
_INTENSITYUNITS = _descriptor.EnumDescriptor(
name='IntensityUnits',
full_name='TSF.IntensityUnits',
filename=None,
file=DESCRIPTOR,
values=[
_descriptor.EnumValueDescriptor(
name='COUNTS', index=0, number=0,
options=None,
type=None),
_descriptor.EnumValueDescriptor(
name='PHOTONS', index=1, number=1,
options=None,
type=None),
],
containing_type=None,
options=None,
serialized_start=961,
serialized_end=1002,
)
_sym_db.RegisterEnumDescriptor(_INTENSITYUNITS)
IntensityUnits = enum_type_wrapper.EnumTypeWrapper(_INTENSITYUNITS)
_LOCATIONUNITS = _descriptor.EnumDescriptor(
name='LocationUnits',
full_name='TSF.LocationUnits',
filename=None,
file=DESCRIPTOR,
values=[
_descriptor.EnumValueDescriptor(
name='NM', index=0, number=0,
options=None,
type=None),
_descriptor.EnumValueDescriptor(
name='UM', index=1, number=1,
options=None,
type=None),
_descriptor.EnumValueDescriptor(
name='PIXELS', index=2, number=2,
options=None,
type=None),
],
containing_type=None,
options=None,
serialized_start=1004,
serialized_end=1047,
)
_sym_db.RegisterEnumDescriptor(_LOCATIONUNITS)
LocationUnits = enum_type_wrapper.EnumTypeWrapper(_LOCATIONUNITS)
ONEAXIS = 0
TWOAXIS = 1
TWOAXISANDTHETA = 2
COUNTS = 0
PHOTONS = 1
NM = 0
UM = 1
PIXELS = 2
_SPOTLIST = _descriptor.Descriptor(
name='SpotList',
full_name='TSF.SpotList',
filename=None,
file=DESCRIPTOR,
containing_type=None,
fields=[
_descriptor.FieldDescriptor(
name='application_id', full_name='TSF.SpotList.application_id', index=0,
number=1, type=5, cpp_type=1, label=2,
has_default_value=True, default_value=1,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='name', full_name='TSF.SpotList.name', index=1,
number=2, type=9, cpp_type=9, label=1,
has_default_value=False, default_value=_b("").decode('utf-8'),
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='filepath', full_name='TSF.SpotList.filepath', index=2,
number=3, type=9, cpp_type=9, label=1,
has_default_value=False, default_value=_b("").decode('utf-8'),
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='uid', full_name='TSF.SpotList.uid', index=3,
number=4, type=3, cpp_type=2, label=1,
has_default_value=False, default_value=0,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='nr_pixels_x', full_name='TSF.SpotList.nr_pixels_x', index=4,
number=5, type=5, cpp_type=1, label=1,
has_default_value=False, default_value=0,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='nr_pixels_y', full_name='TSF.SpotList.nr_pixels_y', index=5,
number=6, type=5, cpp_type=1, label=1,
has_default_value=False, default_value=0,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='pixel_size', full_name='TSF.SpotList.pixel_size', index=6,
number=7, type=2, cpp_type=6, label=1,
has_default_value=False, default_value=0,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='nr_spots', full_name='TSF.SpotList.nr_spots', index=7,
number=8, type=3, cpp_type=2, label=1,
has_default_value=False, default_value=0,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='box_size', full_name='TSF.SpotList.box_size', index=8,
number=17, type=5, cpp_type=1, label=1,
has_default_value=False, default_value=0,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='nr_channels', full_name='TSF.SpotList.nr_channels', index=9,
number=18, type=5, cpp_type=1, label=1,
has_default_value=False, default_value=0,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='nr_frames', full_name='TSF.SpotList.nr_frames', index=10,
number=19, type=5, cpp_type=1, label=1,
has_default_value=False, default_value=0,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='nr_slices', full_name='TSF.SpotList.nr_slices', index=11,
number=20, type=5, cpp_type=1, label=1,
has_default_value=False, default_value=0,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='nr_pos', full_name='TSF.SpotList.nr_pos', index=12,
number=21, type=5, cpp_type=1, label=1,
has_default_value=False, default_value=0,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='location_units', full_name='TSF.SpotList.location_units', index=13,
number=22, type=14, cpp_type=8, label=1,
has_default_value=False, default_value=0,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='intensity_units', full_name='TSF.SpotList.intensity_units', index=14,
number=23, type=14, cpp_type=8, label=1,
has_default_value=False, default_value=0,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='fit_mode', full_name='TSF.SpotList.fit_mode', index=15,
number=24, type=14, cpp_type=8, label=1,
has_default_value=False, default_value=0,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='is_track', full_name='TSF.SpotList.is_track', index=16,
number=25, type=8, cpp_type=7, label=1,
has_default_value=True, default_value=False,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
],
extensions=[
],
nested_types=[],
enum_types=[
],
options=None,
is_extendable=False,
extension_ranges=[],
oneofs=[
],
serialized_start=24,
serialized_end=426,
)
_SPOT = _descriptor.Descriptor(
name='Spot',
full_name='TSF.Spot',
filename=None,
file=DESCRIPTOR,
containing_type=None,
fields=[
_descriptor.FieldDescriptor(
name='molecule', full_name='TSF.Spot.molecule', index=0,
number=1, type=5, cpp_type=1, label=2,
has_default_value=False, default_value=0,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='channel', full_name='TSF.Spot.channel', index=1,
number=2, type=5, cpp_type=1, label=2,
has_default_value=False, default_value=0,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='frame', full_name='TSF.Spot.frame', index=2,
number=3, type=5, cpp_type=1, label=2,
has_default_value=False, default_value=0,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='slice', full_name='TSF.Spot.slice', index=3,
number=4, type=5, cpp_type=1, label=1,
has_default_value=False, default_value=0,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='pos', full_name='TSF.Spot.pos', index=4,
number=5, type=5, cpp_type=1, label=1,
has_default_value=False, default_value=0,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='location_units', full_name='TSF.Spot.location_units', index=5,
number=17, type=14, cpp_type=8, label=1,
has_default_value=False, default_value=0,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='x', full_name='TSF.Spot.x', index=6,
number=7, type=2, cpp_type=6, label=2,
has_default_value=False, default_value=0,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='y', full_name='TSF.Spot.y', index=7,
number=8, type=2, cpp_type=6, label=2,
has_default_value=False, default_value=0,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='z', full_name='TSF.Spot.z', index=8,
number=9, type=2, cpp_type=6, label=1,
has_default_value=False, default_value=0,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='intensity_units', full_name='TSF.Spot.intensity_units', index=9,
number=18, type=14, cpp_type=8, label=1,
has_default_value=False, default_value=0,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='intensity', full_name='TSF.Spot.intensity', index=10,
number=10, type=2, cpp_type=6, label=2,
has_default_value=False, default_value=0,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='background', full_name='TSF.Spot.background', index=11,
number=11, type=2, cpp_type=6, label=1,
has_default_value=False, default_value=0,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='width', full_name='TSF.Spot.width', index=12,
number=12, type=2, cpp_type=6, label=1,
has_default_value=False, default_value=0,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='a', full_name='TSF.Spot.a', index=13,
number=13, type=2, cpp_type=6, label=1,
has_default_value=False, default_value=0,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='theta', full_name='TSF.Spot.theta', index=14,
number=14, type=2, cpp_type=6, label=1,
has_default_value=False, default_value=0,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='flag', full_name='TSF.Spot.flag', index=15,
number=6, type=5, cpp_type=1, label=1,
has_default_value=False, default_value=0,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='x_original', full_name='TSF.Spot.x_original', index=16,
number=101, type=2, cpp_type=6, label=1,
has_default_value=False, default_value=0,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='y_original', full_name='TSF.Spot.y_original', index=17,
number=102, type=2, cpp_type=6, label=1,
has_default_value=False, default_value=0,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='z_original', full_name='TSF.Spot.z_original', index=18,
number=103, type=2, cpp_type=6, label=1,
has_default_value=False, default_value=0,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='x_precision', full_name='TSF.Spot.x_precision', index=19,
number=104, type=2, cpp_type=6, label=1,
has_default_value=False, default_value=0,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='y_precision', full_name='TSF.Spot.y_precision', index=20,
number=105, type=2, cpp_type=6, label=1,
has_default_value=False, default_value=0,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='z_precision', full_name='TSF.Spot.z_precision', index=21,
number=106, type=2, cpp_type=6, label=1,
has_default_value=False, default_value=0,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='x_position', full_name='TSF.Spot.x_position', index=22,
number=107, type=5, cpp_type=1, label=1,
has_default_value=False, default_value=0,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
_descriptor.FieldDescriptor(
name='y_position', full_name='TSF.Spot.y_position', index=23,
number=108, type=5, cpp_type=1, label=1,
has_default_value=False, default_value=0,
message_type=None, enum_type=None, containing_type=None,
is_extension=False, extension_scope=None,
options=None),
],
extensions=[
],
nested_types=[],
enum_types=[
],
options=None,
is_extendable=True,
extension_ranges=[(1500, 2048), ],
oneofs=[
],
serialized_start=429,
serialized_end=901,
)
_SPOTLIST.fields_by_name['location_units'].enum_type = _LOCATIONUNITS
_SPOTLIST.fields_by_name['intensity_units'].enum_type = _INTENSITYUNITS
_SPOTLIST.fields_by_name['fit_mode'].enum_type = _FITMODE
_SPOT.fields_by_name['location_units'].enum_type = _LOCATIONUNITS
_SPOT.fields_by_name['intensity_units'].enum_type = _INTENSITYUNITS
DESCRIPTOR.message_types_by_name['SpotList'] = _SPOTLIST
DESCRIPTOR.message_types_by_name['Spot'] = _SPOT
DESCRIPTOR.enum_types_by_name['FitMode'] = _FITMODE
DESCRIPTOR.enum_types_by_name['IntensityUnits'] = _INTENSITYUNITS
DESCRIPTOR.enum_types_by_name['LocationUnits'] = _LOCATIONUNITS
SpotList = _reflection.GeneratedProtocolMessageType('SpotList', (_message.Message,), dict(
DESCRIPTOR = _SPOTLIST,
__module__ = 'TSFProto_pb2'
# @@protoc_insertion_point(class_scope:TSF.SpotList)
))
_sym_db.RegisterMessage(SpotList)
Spot = _reflection.GeneratedProtocolMessageType('Spot', (_message.Message,), dict(
DESCRIPTOR = _SPOT,
__module__ = 'TSFProto_pb2'
# @@protoc_insertion_point(class_scope:TSF.Spot)
))
_sym_db.RegisterMessage(Spot)
DESCRIPTOR.has_options = True
DESCRIPTOR._options = _descriptor._ParseOptions(descriptor_pb2.FileOptions(), _b('\n\014edu.ucsf.tsfB\021TaggedSpotsProtos'))
# @@protoc_insertion_point(module_scope)