From 484a24dfbcb8920a76d3e305fdcc14b0867673ee Mon Sep 17 00:00:00 2001 From: Nico Matentzoglu Date: Thu, 2 Nov 2023 17:24:26 +0200 Subject: [PATCH] release --- omo-full.json | 30 +++++++++++++++++++++++++-- omo-full.obo | 17 ++++++++++++++-- omo-full.owl | 47 ++++++++++++++++++++++++++++--------------- omo.json | 30 +++++++++++++++++++++++++-- omo.obo | 17 ++++++++++++++-- omo.owl | 47 ++++++++++++++++++++++++++++--------------- src/ontology/Makefile | 4 ++-- 7 files changed, 150 insertions(+), 42 deletions(-) diff --git a/omo-full.json b/omo-full.json index 6c16c6c..9943a1c 100644 --- a/omo-full.json +++ b/omo-full.json @@ -121,9 +121,9 @@ "val" : "https://creativecommons.org/publicdomain/zero/1.0/" }, { "pred" : "http://www.w3.org/2002/07/owl#versionInfo", - "val" : "2023-10-12" + "val" : "2023-11-02" } ], - "version" : "http://purl.obolibrary.org/obo/omo/releases/2023-10-12/omo-full.json" + "version" : "http://purl.obolibrary.org/obo/omo/releases/2023-11-02/omo-full.json" }, "nodes" : [ { "id" : "http://purl.obolibrary.org/obo/IAO_0000002", @@ -1831,6 +1831,10 @@ "definition" : { "val" : "The International Nonproprietary Name (INN) is a standardize name for a pharmaceutical drug or active ingredient issued by the World Health Organization (WHO) meant to address the issues with country- or language-specific brand names. These are issued in several languages, including English, Latin, French, Russian, Spanish, Arabic, and Chinese." }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "INN" + } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "CHEBI:46195 has been assigned the english International Nonproproprietary Name (INN) \"paracetamol\". In some cases such as this one, the INN might be the same as the ontology's primary label" @@ -1867,6 +1871,28 @@ "val" : "2023-10-12" } ] } + }, { + "id" : "http://purl.obolibrary.org/obo/OMO_0003012", + "lbl" : "acronym", + "type" : "PROPERTY", + "meta" : { + "definition" : { + "val" : "A synonym type for describing abbreviations that are a part of the full name's words, such as initialisms or alphabetisms." + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "NASA is an word acronym for the US National Aeronautics and Space Administration because the acronym is pronounced. FBI is an initialism (also known as alphabetism) for the US Federal Bureau of Investigation since the letters are pronounced one at a time. JPEG is an acronym for Joint Photographic Experts Group but does not count as a word acronym nor an initialism since it is mixed how it is pronounced." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000233", + "val" : "https://github.com/information-artifact-ontology/ontology-metadata/issues/135" + }, { + "pred" : "http://purl.org/dc/terms/contributor", + "val" : "https://orcid.org/0000-0003-4423-4370" + }, { + "pred" : "http://purl.org/dc/terms/created", + "val" : "2023-11-01" + } ] + } }, { "id" : "http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym", "lbl" : "has broad synonym", diff --git a/omo-full.obo b/omo-full.obo index d89eed1..c9998d1 100644 --- a/omo-full.obo +++ b/omo-full.obo @@ -1,5 +1,18 @@ format-version: 1.2 -data-version: omo/releases/2023-10-12/omo-full.owl +data-version: omo/releases/2023-11-02/omo-full.owl +synonymtypedef: OMO:0003000 "abbreviation" +synonymtypedef: OMO:0003001 "ambiguous synonym" +synonymtypedef: OMO:0003002 "dubious synonym" +synonymtypedef: OMO:0003003 "layperson synonym" +synonymtypedef: OMO:0003004 "plural form" +synonymtypedef: OMO:0003005 "UK spelling synonym" +synonymtypedef: OMO:0003006 "misspelling" +synonymtypedef: OMO:0003007 "misnomer" +synonymtypedef: OMO:0003008 "previous name" +synonymtypedef: OMO:0003009 "legal name" +synonymtypedef: OMO:0003010 "International Nonproprietary Name" +synonymtypedef: OMO:0003011 "latin term" +synonymtypedef: OMO:0003012 "acronym" ontology: omo/omo-full property_value: defaultLanguage "en" xsd:string property_value: http://purl.org/dc/elements/1.1/contributor "Adam Goldstein" xsd:string @@ -40,7 +53,7 @@ property_value: http://purl.org/dc/elements/1.1/contributor "Yongqun (Oliver) He property_value: http://purl.org/dc/elements/1.1/description "An ontology specifies terms that are used to annotate ontology terms for all OBO ontologies. The ontology was developed as part of Information Artifact Ontology (IAO)." xsd:string property_value: http://purl.org/dc/elements/1.1/title "OBO Metadata Ontology" xsd:string property_value: http://purl.org/dc/terms/license https://creativecommons.org/publicdomain/zero/1.0/ -property_value: owl:versionInfo "2023-10-12" xsd:string +property_value: owl:versionInfo "2023-11-02" xsd:string [Term] id: IAO:0000027 diff --git a/omo-full.owl b/omo-full.owl index 303e27e..f16d748 100644 --- a/omo-full.owl +++ b/omo-full.owl @@ -12,7 +12,7 @@ xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + en Adam Goldstein Alan Ruttenberg @@ -52,7 +52,7 @@ An ontology specifies terms that are used to annotate ontology terms for all OBO ontologies. The ontology was developed as part of Information Artifact Ontology (IAO). OBO Metadata Ontology - 2023-10-12 + 2023-11-02 @@ -592,7 +592,7 @@ EquivalentTo: xsd:integer[> 2151 , <= 2300] 2023-03-03 abbreviation - + @@ -605,7 +605,7 @@ EquivalentTo: xsd:integer[> 2151 , <= 2300] 2023-03-03 ambiguous synonym - + @@ -618,7 +618,7 @@ EquivalentTo: xsd:integer[> 2151 , <= 2300] 2023-03-03 dubious synonym - + @@ -632,7 +632,7 @@ EquivalentTo: xsd:integer[> 2151 , <= 2300] 2023-03-03 layperson synonym - + @@ -646,7 +646,7 @@ EquivalentTo: xsd:integer[> 2151 , <= 2300] 2023-03-03 plural form - + @@ -660,7 +660,7 @@ EquivalentTo: xsd:integer[> 2151 , <= 2300] 2023-03-03 UK spelling synonym - + @@ -673,7 +673,7 @@ EquivalentTo: xsd:integer[> 2151 , <= 2300] 2023-03-03 misspelling - + @@ -686,7 +686,7 @@ EquivalentTo: xsd:integer[> 2151 , <= 2300] 2023-03-03 misnomer - + @@ -700,7 +700,7 @@ EquivalentTo: xsd:integer[> 2151 , <= 2300] 2023-07-25 previous name - + @@ -714,7 +714,7 @@ EquivalentTo: xsd:integer[> 2151 , <= 2300] 2023-07-27 legal name - + @@ -727,8 +727,9 @@ EquivalentTo: xsd:integer[> 2151 , <= 2300] 2023-09-30 + INN International Nonproprietary Name - + @@ -742,7 +743,21 @@ EquivalentTo: xsd:integer[> 2151 , <= 2300] 2023-10-12 latin term - + + + + + + + + + NASA is an word acronym for the US National Aeronautics and Space Administration because the acronym is pronounced. FBI is an initialism (also known as alphabetism) for the US Federal Bureau of Investigation since the letters are pronounced one at a time. JPEG is an acronym for Joint Photographic Experts Group but does not count as a word acronym nor an initialism since it is mixed how it is pronounced. + A synonym type for describing abbreviations that are a part of the full name's words, such as initialisms or alphabetisms. + + + 2023-11-01 + acronym + @@ -855,9 +870,9 @@ EquivalentTo: xsd:integer[> 2151 , <= 2300] - + - + diff --git a/omo.json b/omo.json index eafb26a..64948c6 100644 --- a/omo.json +++ b/omo.json @@ -121,9 +121,9 @@ "val" : "https://creativecommons.org/publicdomain/zero/1.0/" }, { "pred" : "http://www.w3.org/2002/07/owl#versionInfo", - "val" : "2023-10-12" + "val" : "2023-11-02" } ], - "version" : "http://purl.obolibrary.org/obo/omo/releases/2023-10-12/omo.json" + "version" : "http://purl.obolibrary.org/obo/omo/releases/2023-11-02/omo.json" }, "nodes" : [ { "id" : "http://purl.obolibrary.org/obo/IAO_0000002", @@ -1831,6 +1831,10 @@ "definition" : { "val" : "The International Nonproprietary Name (INN) is a standardize name for a pharmaceutical drug or active ingredient issued by the World Health Organization (WHO) meant to address the issues with country- or language-specific brand names. These are issued in several languages, including English, Latin, French, Russian, Spanish, Arabic, and Chinese." }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "INN" + } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "CHEBI:46195 has been assigned the english International Nonproproprietary Name (INN) \"paracetamol\". In some cases such as this one, the INN might be the same as the ontology's primary label" @@ -1867,6 +1871,28 @@ "val" : "2023-10-12" } ] } + }, { + "id" : "http://purl.obolibrary.org/obo/OMO_0003012", + "lbl" : "acronym", + "type" : "PROPERTY", + "meta" : { + "definition" : { + "val" : "A synonym type for describing abbreviations that are a part of the full name's words, such as initialisms or alphabetisms." + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "NASA is an word acronym for the US National Aeronautics and Space Administration because the acronym is pronounced. FBI is an initialism (also known as alphabetism) for the US Federal Bureau of Investigation since the letters are pronounced one at a time. JPEG is an acronym for Joint Photographic Experts Group but does not count as a word acronym nor an initialism since it is mixed how it is pronounced." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000233", + "val" : "https://github.com/information-artifact-ontology/ontology-metadata/issues/135" + }, { + "pred" : "http://purl.org/dc/terms/contributor", + "val" : "https://orcid.org/0000-0003-4423-4370" + }, { + "pred" : "http://purl.org/dc/terms/created", + "val" : "2023-11-01" + } ] + } }, { "id" : "http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym", "lbl" : "has broad synonym", diff --git a/omo.obo b/omo.obo index 1fd005a..917576d 100644 --- a/omo.obo +++ b/omo.obo @@ -1,5 +1,18 @@ format-version: 1.2 -data-version: releases/2023-10-12 +data-version: releases/2023-11-02 +synonymtypedef: OMO:0003000 "abbreviation" +synonymtypedef: OMO:0003001 "ambiguous synonym" +synonymtypedef: OMO:0003002 "dubious synonym" +synonymtypedef: OMO:0003003 "layperson synonym" +synonymtypedef: OMO:0003004 "plural form" +synonymtypedef: OMO:0003005 "UK spelling synonym" +synonymtypedef: OMO:0003006 "misspelling" +synonymtypedef: OMO:0003007 "misnomer" +synonymtypedef: OMO:0003008 "previous name" +synonymtypedef: OMO:0003009 "legal name" +synonymtypedef: OMO:0003010 "International Nonproprietary Name" +synonymtypedef: OMO:0003011 "latin term" +synonymtypedef: OMO:0003012 "acronym" ontology: omo property_value: defaultLanguage "en" xsd:string property_value: http://purl.org/dc/elements/1.1/contributor "Adam Goldstein" xsd:string @@ -40,7 +53,7 @@ property_value: http://purl.org/dc/elements/1.1/contributor "Yongqun (Oliver) He property_value: http://purl.org/dc/elements/1.1/description "An ontology specifies terms that are used to annotate ontology terms for all OBO ontologies. The ontology was developed as part of Information Artifact Ontology (IAO)." xsd:string property_value: http://purl.org/dc/elements/1.1/title "OBO Metadata Ontology" xsd:string property_value: http://purl.org/dc/terms/license https://creativecommons.org/publicdomain/zero/1.0/ -property_value: owl:versionInfo "2023-10-12" xsd:string +property_value: owl:versionInfo "2023-11-02" xsd:string [Term] id: IAO:0000027 diff --git a/omo.owl b/omo.owl index a1b31b6..d3682cb 100644 --- a/omo.owl +++ b/omo.owl @@ -12,7 +12,7 @@ xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + en Adam Goldstein Alan Ruttenberg @@ -52,7 +52,7 @@ An ontology specifies terms that are used to annotate ontology terms for all OBO ontologies. The ontology was developed as part of Information Artifact Ontology (IAO). OBO Metadata Ontology - 2023-10-12 + 2023-11-02 @@ -592,7 +592,7 @@ EquivalentTo: xsd:integer[> 2151 , <= 2300] 2023-03-03 abbreviation - + @@ -605,7 +605,7 @@ EquivalentTo: xsd:integer[> 2151 , <= 2300] 2023-03-03 ambiguous synonym - + @@ -618,7 +618,7 @@ EquivalentTo: xsd:integer[> 2151 , <= 2300] 2023-03-03 dubious synonym - + @@ -632,7 +632,7 @@ EquivalentTo: xsd:integer[> 2151 , <= 2300] 2023-03-03 layperson synonym - + @@ -646,7 +646,7 @@ EquivalentTo: xsd:integer[> 2151 , <= 2300] 2023-03-03 plural form - + @@ -660,7 +660,7 @@ EquivalentTo: xsd:integer[> 2151 , <= 2300] 2023-03-03 UK spelling synonym - + @@ -673,7 +673,7 @@ EquivalentTo: xsd:integer[> 2151 , <= 2300] 2023-03-03 misspelling - + @@ -686,7 +686,7 @@ EquivalentTo: xsd:integer[> 2151 , <= 2300] 2023-03-03 misnomer - + @@ -700,7 +700,7 @@ EquivalentTo: xsd:integer[> 2151 , <= 2300] 2023-07-25 previous name - + @@ -714,7 +714,7 @@ EquivalentTo: xsd:integer[> 2151 , <= 2300] 2023-07-27 legal name - + @@ -727,8 +727,9 @@ EquivalentTo: xsd:integer[> 2151 , <= 2300] 2023-09-30 + INN International Nonproprietary Name - + @@ -742,7 +743,21 @@ EquivalentTo: xsd:integer[> 2151 , <= 2300] 2023-10-12 latin term - + + + + + + + + + NASA is an word acronym for the US National Aeronautics and Space Administration because the acronym is pronounced. FBI is an initialism (also known as alphabetism) for the US Federal Bureau of Investigation since the letters are pronounced one at a time. JPEG is an acronym for Joint Photographic Experts Group but does not count as a word acronym nor an initialism since it is mixed how it is pronounced. + A synonym type for describing abbreviations that are a part of the full name's words, such as initialisms or alphabetisms. + + + 2023-11-01 + acronym + @@ -855,9 +870,9 @@ EquivalentTo: xsd:integer[> 2151 , <= 2300] - + - + diff --git a/src/ontology/Makefile b/src/ontology/Makefile index 5f26ebf..25617eb 100644 --- a/src/ontology/Makefile +++ b/src/ontology/Makefile @@ -1,7 +1,7 @@ # ---------------------------------------- # Makefile for omo # Generated using ontology-development-kit -# ODK Version: v1.4 +# ODK Version: v1.4.3 # ---------------------------------------- # IMPORTANT: DO NOT EDIT THIS FILE. To override default make goals, use omo.Makefile instead @@ -44,7 +44,7 @@ REPORT_PROFILE_OPTS = --profile $(ROBOT_PROFILE) OBO_FORMAT_OPTIONS = SPARQL_VALIDATION_CHECKS = owldef-self-reference iri-range label-with-iri multiple-replaced_by SPARQL_EXPORTS = basic-report -ODK_VERSION_MAKEFILE = v1.4 +ODK_VERSION_MAKEFILE = v1.4.3 TODAY ?= $(shell date +%Y-%m-%d) OBODATE ?= $(shell date +'%d:%m:%Y %H:%M')