From 7f73c7925f431f2808ba610ae8b69cb195075b44 Mon Sep 17 00:00:00 2001 From: Charles Tapley Hoyt Date: Wed, 1 Nov 2023 01:39:03 +0100 Subject: [PATCH 1/3] Add acronym synonym type Closes #135 --- src/templates/annotation_properties.tsv | 1 + 1 file changed, 1 insertion(+) diff --git a/src/templates/annotation_properties.tsv b/src/templates/annotation_properties.tsv index a13dfa2..eb81771 100644 --- a/src/templates/annotation_properties.tsv +++ b/src/templates/annotation_properties.tsv @@ -12,3 +12,4 @@ OMO:0003008 owl:AnnotationProperty previous name A synonym type for names that h OMO:0003009 owl:AnnotationProperty legal name A synonym type for the legal entity name oboInOwl:SynonymType https://orcid.org/0000-0003-4423-4370 2023-07-27 The legal name for Harvard University (https://ror.org/03vek6s52) is President and Fellows of Harvard College https://github.com/information-artifact-ontology/ontology-metadata/issues/141 OMO:0003010 owl:AnnotationProperty International Nonproprietary Name The International Nonproprietary Name (INN) is a standardize name for a pharmaceutical drug or active ingredient issued by the World Health Organization (WHO) meant to address the issues with country- or language-specific brand names. These are issued in several languages, including English, Latin, French, Russian, Spanish, Arabic, and Chinese. oboInOwl:SynonymType https://orcid.org/0000-0003-4423-4370 2023-09-30 "CHEBI:46195 has been assigned the english International Nonproproprietary Name (INN) ""paracetamol"". In some cases such as this one, the INN might be the same as the ontology's primary label" https://github.com/information-artifact-ontology/ontology-metadata/issues/149 INN OMO:0003011 owl:AnnotationProperty latin term A synonym type for describing Latin term synonyms. oboInOwl:SynonymType https://orcid.org/0000-0002-1773-2692 2023-10-12 nasopharynx (UBERON:0001728) has the latin name "pars nasalis pharyngis" https://github.com/information-artifact-ontology/ontology-metadata/issues/146 +OMO:0003012 owl:AnnotationProperty acronym A synonym type for describing abbreviations that are a part of the full name's words, such as initialisms or alphabetisms. oboInOwl:SynonymType https://orcid.org/0000-0003-4423-4370 2023-11-01 NASA is an acronym for the US National Aeronautics and Space Administration https://github.com/information-artifact-ontology/ontology-metadata/issues/135 From f10a4b6092a1348df5d06d6fc163e06fad2438da Mon Sep 17 00:00:00 2001 From: Charles Tapley Hoyt Date: Thu, 2 Nov 2023 09:31:55 +0100 Subject: [PATCH 2/3] Add additional examples --- src/templates/annotation_properties.tsv | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/templates/annotation_properties.tsv b/src/templates/annotation_properties.tsv index eb81771..69cb8a0 100644 --- a/src/templates/annotation_properties.tsv +++ b/src/templates/annotation_properties.tsv @@ -12,4 +12,4 @@ OMO:0003008 owl:AnnotationProperty previous name A synonym type for names that h OMO:0003009 owl:AnnotationProperty legal name A synonym type for the legal entity name oboInOwl:SynonymType https://orcid.org/0000-0003-4423-4370 2023-07-27 The legal name for Harvard University (https://ror.org/03vek6s52) is President and Fellows of Harvard College https://github.com/information-artifact-ontology/ontology-metadata/issues/141 OMO:0003010 owl:AnnotationProperty International Nonproprietary Name The International Nonproprietary Name (INN) is a standardize name for a pharmaceutical drug or active ingredient issued by the World Health Organization (WHO) meant to address the issues with country- or language-specific brand names. These are issued in several languages, including English, Latin, French, Russian, Spanish, Arabic, and Chinese. oboInOwl:SynonymType https://orcid.org/0000-0003-4423-4370 2023-09-30 "CHEBI:46195 has been assigned the english International Nonproproprietary Name (INN) ""paracetamol"". In some cases such as this one, the INN might be the same as the ontology's primary label" https://github.com/information-artifact-ontology/ontology-metadata/issues/149 INN OMO:0003011 owl:AnnotationProperty latin term A synonym type for describing Latin term synonyms. oboInOwl:SynonymType https://orcid.org/0000-0002-1773-2692 2023-10-12 nasopharynx (UBERON:0001728) has the latin name "pars nasalis pharyngis" https://github.com/information-artifact-ontology/ontology-metadata/issues/146 -OMO:0003012 owl:AnnotationProperty acronym A synonym type for describing abbreviations that are a part of the full name's words, such as initialisms or alphabetisms. oboInOwl:SynonymType https://orcid.org/0000-0003-4423-4370 2023-11-01 NASA is an acronym for the US National Aeronautics and Space Administration https://github.com/information-artifact-ontology/ontology-metadata/issues/135 +OMO:0003012 owl:AnnotationProperty acronym A synonym type for describing abbreviations that are a part of the full name's words, such as initialisms or alphabetisms. oboInOwl:SynonymType https://orcid.org/0000-0003-4423-4370 2023-11-01 NASA is an word acronym for the US National Aeronautics and Space Administration because the acronym is pronounced. FBI is an initialism for the US Federal Bureau of Investigation since the letters are pronounced one at a time. JPEG is an acronym for Joint Photographic Experts Group but does not count as a word acronym nor an initialism since it is mixed how it is pronounced. https://github.com/information-artifact-ontology/ontology-metadata/issues/135 From a892763c46a56ae5c08a75b1c3a3b2a1ddcbf832 Mon Sep 17 00:00:00 2001 From: Charles Tapley Hoyt Date: Thu, 2 Nov 2023 09:32:27 +0100 Subject: [PATCH 3/3] Update annotation_properties.tsv --- src/templates/annotation_properties.tsv | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/templates/annotation_properties.tsv b/src/templates/annotation_properties.tsv index 69cb8a0..aa41e12 100644 --- a/src/templates/annotation_properties.tsv +++ b/src/templates/annotation_properties.tsv @@ -12,4 +12,4 @@ OMO:0003008 owl:AnnotationProperty previous name A synonym type for names that h OMO:0003009 owl:AnnotationProperty legal name A synonym type for the legal entity name oboInOwl:SynonymType https://orcid.org/0000-0003-4423-4370 2023-07-27 The legal name for Harvard University (https://ror.org/03vek6s52) is President and Fellows of Harvard College https://github.com/information-artifact-ontology/ontology-metadata/issues/141 OMO:0003010 owl:AnnotationProperty International Nonproprietary Name The International Nonproprietary Name (INN) is a standardize name for a pharmaceutical drug or active ingredient issued by the World Health Organization (WHO) meant to address the issues with country- or language-specific brand names. These are issued in several languages, including English, Latin, French, Russian, Spanish, Arabic, and Chinese. oboInOwl:SynonymType https://orcid.org/0000-0003-4423-4370 2023-09-30 "CHEBI:46195 has been assigned the english International Nonproproprietary Name (INN) ""paracetamol"". In some cases such as this one, the INN might be the same as the ontology's primary label" https://github.com/information-artifact-ontology/ontology-metadata/issues/149 INN OMO:0003011 owl:AnnotationProperty latin term A synonym type for describing Latin term synonyms. oboInOwl:SynonymType https://orcid.org/0000-0002-1773-2692 2023-10-12 nasopharynx (UBERON:0001728) has the latin name "pars nasalis pharyngis" https://github.com/information-artifact-ontology/ontology-metadata/issues/146 -OMO:0003012 owl:AnnotationProperty acronym A synonym type for describing abbreviations that are a part of the full name's words, such as initialisms or alphabetisms. oboInOwl:SynonymType https://orcid.org/0000-0003-4423-4370 2023-11-01 NASA is an word acronym for the US National Aeronautics and Space Administration because the acronym is pronounced. FBI is an initialism for the US Federal Bureau of Investigation since the letters are pronounced one at a time. JPEG is an acronym for Joint Photographic Experts Group but does not count as a word acronym nor an initialism since it is mixed how it is pronounced. https://github.com/information-artifact-ontology/ontology-metadata/issues/135 +OMO:0003012 owl:AnnotationProperty acronym A synonym type for describing abbreviations that are a part of the full name's words, such as initialisms or alphabetisms. oboInOwl:SynonymType https://orcid.org/0000-0003-4423-4370 2023-11-01 NASA is an word acronym for the US National Aeronautics and Space Administration because the acronym is pronounced. FBI is an initialism (also known as alphabetism) for the US Federal Bureau of Investigation since the letters are pronounced one at a time. JPEG is an acronym for Joint Photographic Experts Group but does not count as a word acronym nor an initialism since it is mixed how it is pronounced. https://github.com/information-artifact-ontology/ontology-metadata/issues/135