diff --git a/omo-full.json b/omo-full.json index 59e7244..9c7e46c 100644 --- a/omo-full.json +++ b/omo-full.json @@ -121,9 +121,9 @@ "val" : "https://creativecommons.org/publicdomain/zero/1.0/" }, { "pred" : "http://www.w3.org/2002/07/owl#versionInfo", - "val" : "2023-02-19" + "val" : "2023-05-15" } ], - "version" : "http://purl.obolibrary.org/obo/omo/releases/2023-02-19/omo-full.json" + "version" : "http://purl.obolibrary.org/obo/omo/releases/2023-05-15/omo-full.json" }, "nodes" : [ { "id" : "http://purl.obolibrary.org/obo/IAO_0000002", @@ -1593,6 +1593,132 @@ "val" : "https://orcid.org/0000-0002-8688-6599" } ] } + }, { + "id" : "http://purl.obolibrary.org/obo/OMO_0003000", + "lbl" : "abbreviation", + "type" : "PROPERTY", + "meta" : { + "definition" : { + "val" : "A synonym type for describing abbreviations or initalisms" + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "CHEBI:26523 (reactive oxygen species) has an exact synonym (ROS), which is of type OMO:0003000 (abbreviation)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000233", + "val" : "https://github.com/information-artifact-ontology/ontology-metadata/issues/122" + }, { + "pred" : "http://purl.org/dc/terms/contributor", + "val" : "https://orcid.org/0000-0003-4423-4370" + }, { + "pred" : "http://purl.org/dc/terms/created", + "val" : "2023-03-03" + } ] + } + }, { + "id" : "http://purl.obolibrary.org/obo/OMO_0003001", + "lbl" : "ambiguous synonym", + "type" : "PROPERTY", + "meta" : { + "definition" : { + "val" : "A synonym type for describing ambiguous synonyms" + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000233", + "val" : "https://github.com/information-artifact-ontology/ontology-metadata/issues/122" + }, { + "pred" : "http://purl.org/dc/terms/contributor", + "val" : "https://orcid.org/0000-0003-4423-4370" + }, { + "pred" : "http://purl.org/dc/terms/created", + "val" : "2023-03-03" + } ] + } + }, { + "id" : "http://purl.obolibrary.org/obo/OMO_0003002", + "lbl" : "dubious synonym", + "type" : "PROPERTY", + "meta" : { + "definition" : { + "val" : "A synonym type for describing dubious synonyms" + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000233", + "val" : "https://github.com/information-artifact-ontology/ontology-metadata/issues/122" + }, { + "pred" : "http://purl.org/dc/terms/contributor", + "val" : "https://orcid.org/0000-0003-4423-4370" + }, { + "pred" : "http://purl.org/dc/terms/created", + "val" : "2023-03-03" + } ] + } + }, { + "id" : "http://purl.obolibrary.org/obo/OMO_0003003", + "lbl" : "layperson synonym", + "type" : "PROPERTY", + "meta" : { + "definition" : { + "val" : "A synonym type for describing layperson or colloquial synonyms" + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "EFO:0006346 (severe cutaneous adverse reaction) has an exact synonym (scar), which is of the type OMO:0003003 (layperson synonym)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000233", + "val" : "https://github.com/information-artifact-ontology/ontology-metadata/issues/122" + }, { + "pred" : "http://purl.org/dc/terms/contributor", + "val" : "https://orcid.org/0000-0003-4423-4370" + }, { + "pred" : "http://purl.org/dc/terms/created", + "val" : "2023-03-03" + } ] + } + }, { + "id" : "http://purl.obolibrary.org/obo/OMO_0003004", + "lbl" : "plural form", + "type" : "PROPERTY", + "meta" : { + "definition" : { + "val" : "A synonym type for describing pluralization synonyms" + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "CHEBI:23367 (molecular entity) has an exact synonym (molecular entities), which is of the type OMO:0003004 (plural form)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000233", + "val" : "https://github.com/information-artifact-ontology/ontology-metadata/issues/122" + }, { + "pred" : "http://purl.org/dc/terms/contributor", + "val" : "https://orcid.org/0000-0003-4423-4370" + }, { + "pred" : "http://purl.org/dc/terms/created", + "val" : "2023-03-03" + } ] + } + }, { + "id" : "http://purl.obolibrary.org/obo/OMO_0003005", + "lbl" : "UK spelling synonym", + "type" : "PROPERTY", + "meta" : { + "definition" : { + "val" : "A synonym type for describing UK spelling variants" + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "CHEBI:16189 (sulfate) has an exact synonym (sulphate), which is of the type OMO:0003005 (UK spelling synonym)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000233", + "val" : "https://github.com/information-artifact-ontology/ontology-metadata/issues/122" + }, { + "pred" : "http://purl.org/dc/terms/contributor", + "val" : "https://orcid.org/0000-0003-4423-4370" + }, { + "pred" : "http://purl.org/dc/terms/created", + "val" : "2023-03-03" + } ] + } }, { "id" : "http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym", "lbl" : "has broad synonym", diff --git a/omo-full.obo b/omo-full.obo index be10b05..f6a8701 100644 --- a/omo-full.obo +++ b/omo-full.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: omo/releases/2023-02-19/omo-full.owl +data-version: omo/releases/2023-05-15/omo-full.owl ontology: omo/omo-full property_value: defaultLanguage "en" xsd:string property_value: http://purl.org/dc/elements/1.1/contributor "Adam Goldstein" xsd:string @@ -40,7 +40,7 @@ property_value: http://purl.org/dc/elements/1.1/contributor "Yongqun (Oliver) He property_value: http://purl.org/dc/elements/1.1/description "An ontology specifies terms that are used to annotate ontology terms for all OBO ontologies. The ontology was developed as part of Information Artifact Ontology (IAO)." xsd:string property_value: http://purl.org/dc/elements/1.1/title "OBO Metadata Ontology" xsd:string property_value: http://purl.org/dc/terms/license https://creativecommons.org/publicdomain/zero/1.0/ -property_value: owl:versionInfo "2023-02-19" xsd:string +property_value: owl:versionInfo "2023-05-15" xsd:string [Term] id: IAO:0000027 diff --git a/omo-full.owl b/omo-full.owl index d8c28e6..bce0fd3 100644 --- a/omo-full.owl +++ b/omo-full.owl @@ -12,7 +12,7 @@ xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + en Adam Goldstein Alan Ruttenberg @@ -52,7 +52,7 @@ An ontology specifies terms that are used to annotate ontology terms for all OBO ontologies. The ontology was developed as part of Information Artifact Ontology (IAO). OBO Metadata Ontology - 2023-02-19 + 2023-05-15 @@ -583,6 +583,88 @@ EquivalentTo: xsd:integer[> 2151 , <= 2300] + + + + CHEBI:26523 (reactive oxygen species) has an exact synonym (ROS), which is of type OMO:0003000 (abbreviation) + A synonym type for describing abbreviations or initalisms + + + 2023-03-03 + abbreviation + + + + + + + + + A synonym type for describing ambiguous synonyms + + + 2023-03-03 + ambiguous synonym + + + + + + + + + A synonym type for describing dubious synonyms + + + 2023-03-03 + dubious synonym + + + + + + + + + EFO:0006346 (severe cutaneous adverse reaction) has an exact synonym (scar), which is of the type OMO:0003003 (layperson synonym) + A synonym type for describing layperson or colloquial synonyms + + + 2023-03-03 + layperson synonym + + + + + + + + + CHEBI:23367 (molecular entity) has an exact synonym (molecular entities), which is of the type OMO:0003004 (plural form) + A synonym type for describing pluralization synonyms + + + 2023-03-03 + plural form + + + + + + + + + CHEBI:16189 (sulfate) has an exact synonym (sulphate), which is of the type OMO:0003005 (UK spelling synonym) + A synonym type for describing UK spelling variants + + + 2023-03-03 + UK spelling synonym + + + + + @@ -673,12 +755,30 @@ EquivalentTo: xsd:integer[> 2151 , <= 2300] + + + + + + + + + + + + + + + + + + @@ -743,6 +843,23 @@ EquivalentTo: xsd:integer[> 2151 , <= 2300] + + + + + + + + + + + + + + CHEBI:26523 (reactive oxygen species) has an exact synonym (ROS), which is of type OMO:0003000 (abbreviation) + A synonym type for describing abbreviations or initalisms + + + 2023-03-03 + abbreviation + + + + + + + + + A synonym type for describing ambiguous synonyms + + + 2023-03-03 + ambiguous synonym + + + + + + + + + A synonym type for describing dubious synonyms + + + 2023-03-03 + dubious synonym + + + + + + + + + EFO:0006346 (severe cutaneous adverse reaction) has an exact synonym (scar), which is of the type OMO:0003003 (layperson synonym) + A synonym type for describing layperson or colloquial synonyms + + + 2023-03-03 + layperson synonym + + + + + + + + + CHEBI:23367 (molecular entity) has an exact synonym (molecular entities), which is of the type OMO:0003004 (plural form) + A synonym type for describing pluralization synonyms + + + 2023-03-03 + plural form + + + + + + + + + CHEBI:16189 (sulfate) has an exact synonym (sulphate), which is of the type OMO:0003005 (UK spelling synonym) + A synonym type for describing UK spelling variants + + + 2023-03-03 + UK spelling synonym + + + + + @@ -673,12 +755,30 @@ EquivalentTo: xsd:integer[> 2151 , <= 2300] + + + + + + + + + + + + + + + + + + @@ -743,6 +843,23 @@ EquivalentTo: xsd:integer[> 2151 , <= 2300] + + + + + + + + + + +