From 9853d7b224a22d7680499e1cc10a3225b6e5f2e5 Mon Sep 17 00:00:00 2001 From: Charles Tapley Hoyt Date: Mon, 9 Oct 2023 17:41:28 +0200 Subject: [PATCH 1/3] Add latin name --- src/templates/annotation_properties.tsv | 1 + 1 file changed, 1 insertion(+) diff --git a/src/templates/annotation_properties.tsv b/src/templates/annotation_properties.tsv index 0b3223d..738c337 100644 --- a/src/templates/annotation_properties.tsv +++ b/src/templates/annotation_properties.tsv @@ -10,3 +10,4 @@ OMO:0003006 owl:AnnotationProperty misspelling A synonym type for common misspel OMO:0003007 owl:AnnotationProperty misnomer A synonym type for misnomers, i.e., a synonym that is not technically correct but is commonly used anyway oboInOwl:SynonymType https://orcid.org/0000-0003-4423-4370 2023-03-03 https://github.com/information-artifact-ontology/ontology-metadata/issues/133 OMO:0003008 owl:AnnotationProperty previous name A synonym type for names that have been used as primary labels in the past. oboInOwl:SynonymType https://orcid.org/0000-0003-4423-4370 2023-07-25 MAPT, the gene that encodes the Tau protein, has a previous name DDPAC. Note: in this case, the name type is more specifically the gene symbol. https://github.com/information-artifact-ontology/ontology-metadata/issues/139 OMO:0003009 owl:AnnotationProperty legal name A synonym type for the legal entity name oboInOwl:SynonymType https://orcid.org/0000-0003-4423-4370 2023-07-27 The legal name for Harvard University (https://ror.org/03vek6s52) is President and Fellows of Harvard College https://github.com/information-artifact-ontology/ontology-metadata/issues/141 +OMO:0003011 owl:AnnotationProperty latin term A synonym type for describing Latin term synonyms. oboInOwl:SynonymType https://orcid.org/0000-0002-1773-2692 nasopharynx (UBERON:0001728) has the latin name "pars nasalis pharyngis" https://github.com/information-artifact-ontology/ontology-metadata/issues/146 From e6af4b215b82e599c53da7f46d046615138ef83a Mon Sep 17 00:00:00 2001 From: Charles Tapley Hoyt Date: Mon, 9 Oct 2023 17:44:13 +0200 Subject: [PATCH 2/3] Add SSSOM mappings Co-Authored-By: bvarner-ebi <95643797+bvarner-ebi@users.noreply.github.com> --- src/ontology/components/omo-to-external.tsv | 3 +++ 1 file changed, 3 insertions(+) diff --git a/src/ontology/components/omo-to-external.tsv b/src/ontology/components/omo-to-external.tsv index cbfa18f..2b89255 100644 --- a/src/ontology/components/omo-to-external.tsv +++ b/src/ontology/components/omo-to-external.tsv @@ -6,6 +6,7 @@ # HP_HASH: "http://purl.obolibrary.org/obo/hp#" # NCBITaxon_HASH: "http://purl.obolibrary.org/obo/ncbitaxon#" # UBERON_CORE_HASH: "http://purl.obolibrary.org/obo/uberon/core#" +# UBERON_HASH: "http://purl.obolibrary.org/obo/uberon#" # FOVT_HASH: "http://purl.obolibrary.org/obo/fovt#" # MONDO_HASH: "http://purl.obolibrary.org/obo/mondo#" subject_id subject_label predicate_id object_id object_label notes mapping_justification author_id @@ -18,3 +19,5 @@ OMO:0003006 misspelling owl:equivalentProperty UBERON_CORE_HASH:MISSPELLING miss OMO:0003006 misspelling owl:equivalentProperty FOVT_HASH:misspelling misspelling . semapv:ManualMappingCuration https://orcid.org/0000-0003-4423-4370 OMO:0003006 misspelling owl:equivalentProperty MONDO_HASH:MISSPELLING misspelling . semapv:ManualMappingCuration https://orcid.org/0000-0003-4423-4370 OMO:0003007 misnomer owl:equivalentProperty NCBITaxon_HASH:misnomer misnomer . semapv:ManualMappingCuration https://orcid.org/0000-0003-4423-4370 +OMO:0003011 latin name owl:equivalentProperty UBERON_CORE_HASH:LATIN latin name . semapv:ManualMappingCuration https://orcid.org/0000-0002-1773-2692 +OMO:0003011 latin name owl:equivalentProperty UBERON_HASH:LATIN latin name . semapv:ManualMappingCuration https://orcid.org/0000-0002-1773-2692 From 2a51eede276f2b21a3263f7aa6c4b5955f3a95fc Mon Sep 17 00:00:00 2001 From: Charles Tapley Hoyt Date: Mon, 9 Oct 2023 17:45:49 +0200 Subject: [PATCH 3/3] Update omo-to-external.tsv Co-Authored-By: bvarner-ebi <95643797+bvarner-ebi@users.noreply.github.com> --- src/ontology/components/omo-to-external.tsv | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/ontology/components/omo-to-external.tsv b/src/ontology/components/omo-to-external.tsv index 2b89255..c999f93 100644 --- a/src/ontology/components/omo-to-external.tsv +++ b/src/ontology/components/omo-to-external.tsv @@ -19,5 +19,5 @@ OMO:0003006 misspelling owl:equivalentProperty UBERON_CORE_HASH:MISSPELLING miss OMO:0003006 misspelling owl:equivalentProperty FOVT_HASH:misspelling misspelling . semapv:ManualMappingCuration https://orcid.org/0000-0003-4423-4370 OMO:0003006 misspelling owl:equivalentProperty MONDO_HASH:MISSPELLING misspelling . semapv:ManualMappingCuration https://orcid.org/0000-0003-4423-4370 OMO:0003007 misnomer owl:equivalentProperty NCBITaxon_HASH:misnomer misnomer . semapv:ManualMappingCuration https://orcid.org/0000-0003-4423-4370 -OMO:0003011 latin name owl:equivalentProperty UBERON_CORE_HASH:LATIN latin name . semapv:ManualMappingCuration https://orcid.org/0000-0002-1773-2692 -OMO:0003011 latin name owl:equivalentProperty UBERON_HASH:LATIN latin name . semapv:ManualMappingCuration https://orcid.org/0000-0002-1773-2692 +OMO:0003011 latin term owl:equivalentProperty UBERON_CORE_HASH:LATIN latin term . semapv:ManualMappingCuration https://orcid.org/0000-0002-1773-2692 +OMO:0003011 latin term owl:equivalentProperty UBERON_HASH:LATIN latin term . semapv:ManualMappingCuration https://orcid.org/0000-0002-1773-2692