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HPC_Users.md

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This is a manual for HPC users. It is based on job submission in MinSAR app

In this workflow, you need to create jobs and then run them in order

To create jobs, run:

miaplpyApp.py $PWD/PichinchaSenDT142.template --dir miaplpy --jobfiles

After the jobs are created, you may run them with one of the appropriate submit commands:

submit_jobs.bash $PWD/PichinchaSenDT142.template --miaplpy
(submit_jobs.bash $PWD/PichinchaSenDT142.template --dostep miaplpy)

submit_jobs.bash commmand can be used for running individual jobs in run_files:

sbatch_jobs.bash miaplpy/{unwrapping_network}/run_files/run_01_miaplpy_load_data 
submit_jobs.bash miaplpy/{unwrapping_network}/run_files/run_02_miaplpy_phase_linking
submit_jobs.bash miaplpy/{unwrapping_network}/run_files/run_03_miaplpy_concatenate_patch
submit_jobs.bash miaplpy/{unwrapping_network}/run_files/run_04_miaplpy_generate_ifgram
submit_jobs.bash miaplpy/{unwrapping_network}/run_files/run_05_miaplpy_unwrap_ifgram
submit_jobs.bash miaplpy/{unwrapping_network}/run_files/run_06_miaplpy_load_ifgram
submit_jobs.bash miaplpy/{unwrapping_network}/run_files/run_07_miaplpy_ifgram_Correction 
submit_jobs.bash miaplpy/{unwrapping_network}/run_files/run_08_miaplpy_invert_network
submit_jobs.bash miaplpy/{unwrapping_network}/run_files/run_09_miaplpy_timeseries_correction