From 133f6f9bd99e17ab3498d1a8015d91f450d2d4bf Mon Sep 17 00:00:00 2001 From: cav-ipb Date: Thu, 20 Jun 2024 12:36:06 +0200 Subject: [PATCH 1/3] Fix co-occurrences summary layout by fixing the nodes --- .../co-ocurrence-summary-page.component.tsx | 42 +++++++++++++++---- 1 file changed, 35 insertions(+), 7 deletions(-) diff --git a/ontology-manager-client/src/pages/visualization/co-ocurrences-summary/co-ocurrence-summary-page.component.tsx b/ontology-manager-client/src/pages/visualization/co-ocurrences-summary/co-ocurrence-summary-page.component.tsx index f32943d..86f2f84 100644 --- a/ontology-manager-client/src/pages/visualization/co-ocurrences-summary/co-ocurrence-summary-page.component.tsx +++ b/ontology-manager-client/src/pages/visualization/co-ocurrences-summary/co-ocurrence-summary-page.component.tsx @@ -92,6 +92,7 @@ const CoOcurrenceSummaryPageComponent: React.FC = () => { const emptySankey : Partial = { node: { + pad: 30, label: [], }, link: { @@ -103,6 +104,7 @@ const CoOcurrenceSummaryPageComponent: React.FC = () => { name: 'myplot', orientation: 'h', visible: true, + arrangement: "fixed" // legend: '', // legendrank: 1, // legendgrouptitle: {}, @@ -120,6 +122,18 @@ const CoOcurrenceSummaryPageComponent: React.FC = () => { // valuesuffix: '', // uirevision: 23, } + + const chartConfig : Partial = { + toImageButtonOptions : { + format: "svg", + filename: "co-occurrences.svg" + }, + } + + const chartLayout: Partial = { + autosize: true + } + const [sankeyData, setSankeyData] = useState>( emptySankey ) @@ -201,12 +215,22 @@ const CoOcurrenceSummaryPageComponent: React.FC = () => { setLeftTypeQuery(query.leftTypeQuery); setRightTypeQuery(query.rightTypeQuery); - setSankeyData({...sankeyData, node: {label: nodes, color: colors}, link: { - source: sourcex, - target: targetx, - value: valuex, - label: labelx - }}) + setSankeyData( + { + ...sankeyData, + arrangement:"fixed", + node: { + label: nodes, + color: colors + }, + link: { + source: sourcex, + target: targetx, + value: valuex, + label: labelx + } + } + ); } @@ -410,12 +434,16 @@ const CoOcurrenceSummaryPageComponent: React.FC = () => {
{ + if (!event.points[0].source || !event.points[0].target) + return; + const newLeftQuery: ITypeQuery = {...leftTypeQuery}; const newRightQuery: ITypeQuery = {...rightTypeQuery}; From 62f2aa78ffde021f4a2da9d934946e56ff636762 Mon Sep 17 00:00:00 2001 From: cav-ipb Date: Thu, 20 Jun 2024 12:47:29 +0200 Subject: [PATCH 2/3] Fix co-occurrences examples layout --- .../visualization/cooccurrences-visualization-history.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/ontology-manager-client/src/services/modules/visualization/cooccurrences-visualization-history.json b/ontology-manager-client/src/services/modules/visualization/cooccurrences-visualization-history.json index 71fc83a..20efbe6 100644 --- a/ontology-manager-client/src/services/modules/visualization/cooccurrences-visualization-history.json +++ b/ontology-manager-client/src/services/modules/visualization/cooccurrences-visualization-history.json @@ -47,7 +47,7 @@ "type": "disease" } }, - "visualization": "{\n \"node\": {\n \"label\": [\n \"Malvaceae\",\n \"Caricaceae\",\n \"Amaranthaceae\",\n \"Vitaceae\",\n \"Papaveraceae\",\n \"Thelypteridaceae\",\n \"Petiveriaceae\",\n \"Sparmanniaceae\",\n \"Myrtaceae\",\n \"Bignoniaceae\",\n \"Solanaceae\",\n \"Begoniaceae\",\n \"Calophyllaceae\",\n \"Brassicaceae\",\n \"Anacardiaceae\",\n \"Oleaceae\",\n \"Asparagaceae\",\n \"Cochlospermaceae\",\n \"Polygonaceae\",\n \"Olacaceae\",\n \"Pteridaceae\",\n \"Pedaliaceae\",\n \"Sapotaceae\",\n \"Caryophyllaceae\",\n \"Chenopodiaceae\",\n \"Dioscoreaceae\",\n \"Plantaginaceae\",\n \"Araceae\",\n \"Apiaceae\",\n \"Combretaceae\",\n \"Byttneriaceae\",\n \"Cannabaceae\",\n \"Oxalidaceae\",\n \"Zingiberaceae\",\n \"Rutaceae\",\n \"Onagraceae\",\n \"Poaceae\",\n \"Lamiaceae\",\n \"Menispermaceae\",\n \"Bixaceae\",\n \"Apocynaceae\",\n \"Phyllanthaceae\",\n \"Acanthaceae\",\n \"Bombacaceae\",\n \"Magnoliaceae\",\n \"Flacourtiaceae\",\n \"Euphorbiaceae\",\n \"Annonaceae\",\n \"Lauraceae\",\n \"Cucurbitaceae\",\n \"Moraceae\",\n \"Meliaceae\",\n \"Fabaceae\",\n \"Simaroubaceae\",\n \"Sapindaceae\",\n \"Asteraceae\",\n \"Cyperaceae\",\n \"Amaryllidaceae\",\n \"malaria\"\n ],\n \"color\": [\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#b1002a\"\n ]\n },\n \"link\": {\n \"source\": [\n 42,\n 4,\n 9,\n 52,\n 54,\n 57,\n 26,\n 14,\n 10,\n 51,\n 39,\n 34,\n 5,\n 23,\n 55,\n 48,\n 46,\n 30,\n 17,\n 56,\n 35,\n 1,\n 49,\n 50,\n 7,\n 40,\n 8,\n 41,\n 28,\n 0,\n 47,\n 31,\n 37,\n 43,\n 38,\n 19,\n 21,\n 24,\n 44,\n 2,\n 22,\n 45,\n 6,\n 25,\n 29,\n 12,\n 11,\n 36,\n 3,\n 18,\n 13,\n 33,\n 20,\n 15,\n 27,\n 53,\n 32,\n 16\n ],\n \"target\": [\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58\n ],\n \"value\": [\n 13,\n 4,\n 14,\n 68,\n 18,\n 5,\n 7,\n 11,\n 11,\n 35,\n 4,\n 10,\n 5,\n 6,\n 36,\n 5,\n 22,\n 7,\n 4,\n 5,\n 3,\n 7,\n 11,\n 4,\n 7,\n 8,\n 20,\n 4,\n 10,\n 19,\n 19,\n 2,\n 33,\n 8,\n 5,\n 10,\n 5,\n 6,\n 5,\n 9,\n 8,\n 2,\n 6,\n 7,\n 4,\n 2,\n 2,\n 7,\n 4,\n 2,\n 2,\n 2,\n 2,\n 2,\n 1,\n 3,\n 1,\n 1\n ],\n \"label\": [\n \"Acanthaceae - TREATS - malaria\",\n \"Papaveraceae - TREATS - malaria\",\n \"Bignoniaceae - TREATS - malaria\",\n \"Fabaceae - TREATS - malaria\",\n \"Sapindaceae - TREATS - malaria\",\n \"Amaryllidaceae - TREATS - malaria\",\n \"Plantaginaceae - TREATS - malaria\",\n \"Anacardiaceae - TREATS - malaria\",\n \"Solanaceae - TREATS - malaria\",\n \"Meliaceae - TREATS - malaria\",\n \"Bixaceae - TREATS - malaria\",\n \"Rutaceae - TREATS - malaria\",\n \"Thelypteridaceae - TREATS - malaria\",\n \"Caryophyllaceae - TREATS - malaria\",\n \"Asteraceae - TREATS - malaria\",\n \"Lauraceae - TREATS - malaria\",\n \"Euphorbiaceae - TREATS - malaria\",\n \"Byttneriaceae - TREATS - malaria\",\n \"Cochlospermaceae - TREATS - malaria\",\n \"Cyperaceae - TREATS - malaria\",\n \"Onagraceae - TREATS - malaria\",\n \"Caricaceae - TREATS - malaria\",\n \"Cucurbitaceae - TREATS - malaria\",\n \"Moraceae - TREATS - malaria\",\n \"Sparmanniaceae - TREATS - malaria\",\n \"Apocynaceae - TREATS - malaria\",\n \"Myrtaceae - TREATS - malaria\",\n \"Phyllanthaceae - TREATS - malaria\",\n \"Apiaceae - TREATS - malaria\",\n \"Malvaceae - TREATS - malaria\",\n \"Annonaceae - TREATS - malaria\",\n \"Cannabaceae - TREATS - malaria\",\n \"Lamiaceae - TREATS - malaria\",\n \"Bombacaceae - TREATS - malaria\",\n \"Menispermaceae - TREATS - malaria\",\n \"Olacaceae - TREATS - malaria\",\n \"Pedaliaceae - TREATS - malaria\",\n \"Chenopodiaceae - TREATS - malaria\",\n \"Magnoliaceae - TREATS - malaria\",\n \"Amaranthaceae - TREATS - malaria\",\n \"Sapotaceae - TREATS - malaria\",\n \"Flacourtiaceae - TREATS - malaria\",\n \"Petiveriaceae - TREATS - malaria\",\n \"Dioscoreaceae - TREATS - malaria\",\n \"Combretaceae - TREATS - malaria\",\n \"Calophyllaceae - TREATS - malaria\",\n \"Begoniaceae - TREATS - malaria\",\n \"Poaceae - TREATS - malaria\",\n \"Vitaceae - TREATS - malaria\",\n \"Polygonaceae - TREATS - malaria\",\n \"Brassicaceae - TREATS - malaria\",\n \"Zingiberaceae - TREATS - malaria\",\n \"Pteridaceae - TREATS - malaria\",\n \"Oleaceae - TREATS - malaria\",\n \"Araceae - TREATS - malaria\",\n \"Simaroubaceae - TREATS - malaria\",\n \"Oxalidaceae - TREATS - malaria\",\n \"Asparagaceae - TREATS - malaria\"\n ]\n },\n \"type\": \"sankey\",\n \"name\": \"myplot\",\n \"orientation\": \"h\",\n \"visible\": true\n}" + "visualization": "{\n \"arrangement\": \"fixed\",\n \"node\": {\n \"label\": [\n \"Malvaceae\",\n \"Caricaceae\",\n \"Amaranthaceae\",\n \"Vitaceae\",\n \"Papaveraceae\",\n \"Thelypteridaceae\",\n \"Petiveriaceae\",\n \"Sparmanniaceae\",\n \"Myrtaceae\",\n \"Bignoniaceae\",\n \"Solanaceae\",\n \"Begoniaceae\",\n \"Calophyllaceae\",\n \"Brassicaceae\",\n \"Anacardiaceae\",\n \"Oleaceae\",\n \"Asparagaceae\",\n \"Cochlospermaceae\",\n \"Polygonaceae\",\n \"Olacaceae\",\n \"Pteridaceae\",\n \"Pedaliaceae\",\n \"Sapotaceae\",\n \"Caryophyllaceae\",\n \"Chenopodiaceae\",\n \"Dioscoreaceae\",\n \"Plantaginaceae\",\n \"Araceae\",\n \"Apiaceae\",\n \"Combretaceae\",\n \"Byttneriaceae\",\n \"Cannabaceae\",\n \"Oxalidaceae\",\n \"Zingiberaceae\",\n \"Rutaceae\",\n \"Onagraceae\",\n \"Poaceae\",\n \"Lamiaceae\",\n \"Menispermaceae\",\n \"Bixaceae\",\n \"Apocynaceae\",\n \"Phyllanthaceae\",\n \"Acanthaceae\",\n \"Bombacaceae\",\n \"Magnoliaceae\",\n \"Flacourtiaceae\",\n \"Euphorbiaceae\",\n \"Annonaceae\",\n \"Lauraceae\",\n \"Cucurbitaceae\",\n \"Moraceae\",\n \"Meliaceae\",\n \"Fabaceae\",\n \"Simaroubaceae\",\n \"Sapindaceae\",\n \"Asteraceae\",\n \"Cyperaceae\",\n \"Amaryllidaceae\",\n \"malaria\"\n ],\n \"color\": [\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#297e00\",\n \"#b1002a\"\n ]\n },\n \"link\": {\n \"source\": [\n 42,\n 4,\n 9,\n 52,\n 54,\n 57,\n 26,\n 14,\n 10,\n 51,\n 39,\n 34,\n 5,\n 23,\n 55,\n 48,\n 46,\n 30,\n 17,\n 56,\n 35,\n 1,\n 49,\n 50,\n 7,\n 40,\n 8,\n 41,\n 28,\n 0,\n 47,\n 31,\n 37,\n 43,\n 38,\n 19,\n 21,\n 24,\n 44,\n 2,\n 22,\n 45,\n 6,\n 25,\n 29,\n 12,\n 11,\n 36,\n 3,\n 18,\n 13,\n 33,\n 20,\n 15,\n 27,\n 53,\n 32,\n 16\n ],\n \"target\": [\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58,\n 58\n ],\n \"value\": [\n 13,\n 4,\n 14,\n 68,\n 18,\n 5,\n 7,\n 11,\n 11,\n 35,\n 4,\n 10,\n 5,\n 6,\n 36,\n 5,\n 22,\n 7,\n 4,\n 5,\n 3,\n 7,\n 11,\n 4,\n 7,\n 8,\n 20,\n 4,\n 10,\n 19,\n 19,\n 2,\n 33,\n 8,\n 5,\n 10,\n 5,\n 6,\n 5,\n 9,\n 8,\n 2,\n 6,\n 7,\n 4,\n 2,\n 2,\n 7,\n 4,\n 2,\n 2,\n 2,\n 2,\n 2,\n 1,\n 3,\n 1,\n 1\n ],\n \"label\": [\n \"Acanthaceae - TREATS - malaria\",\n \"Papaveraceae - TREATS - malaria\",\n \"Bignoniaceae - TREATS - malaria\",\n \"Fabaceae - TREATS - malaria\",\n \"Sapindaceae - TREATS - malaria\",\n \"Amaryllidaceae - TREATS - malaria\",\n \"Plantaginaceae - TREATS - malaria\",\n \"Anacardiaceae - TREATS - malaria\",\n \"Solanaceae - TREATS - malaria\",\n \"Meliaceae - TREATS - malaria\",\n \"Bixaceae - TREATS - malaria\",\n \"Rutaceae - TREATS - malaria\",\n \"Thelypteridaceae - TREATS - malaria\",\n \"Caryophyllaceae - TREATS - malaria\",\n \"Asteraceae - TREATS - malaria\",\n \"Lauraceae - TREATS - malaria\",\n \"Euphorbiaceae - TREATS - malaria\",\n \"Byttneriaceae - TREATS - malaria\",\n \"Cochlospermaceae - TREATS - malaria\",\n \"Cyperaceae - TREATS - malaria\",\n \"Onagraceae - TREATS - malaria\",\n \"Caricaceae - TREATS - malaria\",\n \"Cucurbitaceae - TREATS - malaria\",\n \"Moraceae - TREATS - malaria\",\n \"Sparmanniaceae - TREATS - malaria\",\n \"Apocynaceae - TREATS - malaria\",\n \"Myrtaceae - TREATS - malaria\",\n \"Phyllanthaceae - TREATS - malaria\",\n \"Apiaceae - TREATS - malaria\",\n \"Malvaceae - TREATS - malaria\",\n \"Annonaceae - TREATS - malaria\",\n \"Cannabaceae - TREATS - malaria\",\n \"Lamiaceae - TREATS - malaria\",\n \"Bombacaceae - TREATS - malaria\",\n \"Menispermaceae - TREATS - malaria\",\n \"Olacaceae - TREATS - malaria\",\n \"Pedaliaceae - TREATS - malaria\",\n \"Chenopodiaceae - TREATS - malaria\",\n \"Magnoliaceae - TREATS - malaria\",\n \"Amaranthaceae - TREATS - malaria\",\n \"Sapotaceae - TREATS - malaria\",\n \"Flacourtiaceae - TREATS - malaria\",\n \"Petiveriaceae - TREATS - malaria\",\n \"Dioscoreaceae - TREATS - malaria\",\n \"Combretaceae - TREATS - malaria\",\n \"Calophyllaceae - TREATS - malaria\",\n \"Begoniaceae - TREATS - malaria\",\n \"Poaceae - TREATS - malaria\",\n \"Vitaceae - TREATS - malaria\",\n \"Polygonaceae - TREATS - malaria\",\n \"Brassicaceae - TREATS - malaria\",\n \"Zingiberaceae - TREATS - malaria\",\n \"Pteridaceae - TREATS - malaria\",\n \"Oleaceae - TREATS - malaria\",\n \"Araceae - TREATS - malaria\",\n \"Simaroubaceae - TREATS - malaria\",\n \"Oxalidaceae - TREATS - malaria\",\n \"Asparagaceae - TREATS - malaria\"\n ]\n },\n \"type\": \"sankey\",\n \"name\": \"myplot\",\n \"orientation\": \"h\",\n \"visible\": true\n}" } ] From cd6ac04413a12a92de9865603bdf93a160b3d51c Mon Sep 17 00:00:00 2001 From: cav-ipb Date: Fri, 21 Jun 2024 23:11:50 +0200 Subject: [PATCH 3/3] Fix redirection for links in documentation page --- .../documentation-page.component.tsx | 27 +++++++++++-------- 1 file changed, 16 insertions(+), 11 deletions(-) diff --git a/ontology-manager-client/src/pages/documentation/documentation-page.component.tsx b/ontology-manager-client/src/pages/documentation/documentation-page.component.tsx index 394ea60..8965c91 100644 --- a/ontology-manager-client/src/pages/documentation/documentation-page.component.tsx +++ b/ontology-manager-client/src/pages/documentation/documentation-page.component.tsx @@ -16,7 +16,7 @@ const DocumentationPageComponent: React.FC = () => {

The creation of an advanced data collection and analysis software tool dedicated to empower the joined research and knowledge exchange of the GLACIER consortium (and beyond) on plant-derived natural products and their usage for the treatment of infectious diseases, with focus on the flora and epidemiological needs of Latin-America.

GLACIER (German Latin-American Center for Infection and Epidemiology Research & Training) is an international multidisciplinary consortium that aims to level regional disparities in Latin America by strengthening surveillance and response to emerging infectious diseases and developing new vaccines and therapies. GLACIER is made up of more than 30 cooperating institutions from nine countries (Germany, Mexico, Cuba, Costa Rica, Nicaragua, Honduras, El Salvador, Panama, and Guatemala). -For further information, please visit the GLACIER consortium’s official website About | GLACIER One Health Project +For further information, please visit the GLACIER consortium’s official website About | GLACIER One Health Project

@@ -28,54 +28,59 @@ For further information, please visit the GLACIER consortium’s official websit

The development of this tool, as part of the activities of the GLACIER consortium, is funded by the DAAD, Germany (Deutscher Akademischer Austauschdienst/German Academic Exchange Service; funding code DAAD 57592717).

GLACIER (German Latin-American Center for Infection and Epidemiology Research & Training) is an international multidisciplinary consortium that aims to level regional disparities in Latin America by strengthening surveillance and response to emerging infectious diseases and developing new vaccines and therapies. GLACIER is made up of more than 30 cooperating institutions from nine countries (Germany, Mexico, Cuba, Costa Rica, Nicaragua, Honduras, El Salvador, Panama, and Guatemala). -For further information, please visit the GLACIER consortium’s official website About | GLACIER One Health Project +For further information, please visit the GLACIER consortium’s official website About | GLACIER One Health Project

Collection of Open Natural Products (COCONUT)

- Sorokina, M., Merseburger, P., Rajan, K. et al. COCONUT online: Collection of Open Natural Products database. J Cheminform 13, 2 (2021). https://doi.org/10.1186/s13321-020-00478-9 + Sorokina, M., Merseburger, P., Rajan, K. et al. COCONUT online: Collection of Open Natural Products database. J Cheminform 13, 2 (2021). https://doi.org/10.1186/s13321-020-00478-9

ChEMBL Database

Zdrazil B, Felix E, Hunter F, Manners EJ, Blackshaw J, Corbett S, de Veij M, Ioannidis H, Lopez DM, Mosquera JF, Magarinos MP, Bosc N, Arcila R, Kizilören T, Gaulton A, Bento AP, Adasme MF, Monecke P, Landrum GA, Leach AR. The ChEMBL Database in 2023: a drug discovery platform spanning multiple bioactivity data types and time periods. Nucleic Acids Res. 2024 Jan 5;52(D1):D1180-D1192. - 10.1093/nar/gkv352 + 10.1093/nar/gkv352

ChEBI

- Hastings J, Owen G, Dekker A, Ennis M, Kale N, Muthukrishnan V, Turner S, Swainston N, Mendes P, Steinbeck C. (2016). ChEBI in 2016: Improved services and an expanding collection of metabolites. Nucleic Acids Res. + Hastings J, Owen G, Dekker A, Ennis M, Kale N, Muthukrishnan V, Turner S, Swainston N, Mendes P, Steinbeck C. (2016). ChEBI in 2016: Improved services and an expanding collection of metabolites. Nucleic Acids Res.

MPDB 2.0

- Nazmul Hussain, Rony Chanda, Ruhshan Ahmed Abir, Mohsina Akter Mou, Md. Kamrul Hasan & M. Arif Ashraf. (2021). MPDB 2.0: a large scale and integrated medicinal plant database of Bangladesh. BMC Research Notes, 14, 301 (2021). + Nazmul Hussain, Rony Chanda, Ruhshan Ahmed Abir, Mohsina Akter Mou, Md. Kamrul Hasan & M. Arif Ashraf. (2021). MPDB 2.0: a large scale and integrated medicinal plant database of Bangladesh. BMC Research Notes, 14, 301 (2021).

Dispel

- Kavya Singh, Harshit Maurya, Parthasarathi Singh, Pujarani Panda, Amit Kumar Behera, Arshad Jamal, Ganesh Eslavath, Somesh Mohapatra, Harsh Chauhan, Deepak Sharma, DISPEL: database for ascertaining the best medicinal plants to cure human diseases, Database, Volume 2023, 2023, baad073, https://doi.org/10.1093/database/baad073

+ Kavya Singh, Harshit Maurya, Parthasarathi Singh, Pujarani Panda, Amit Kumar Behera, Arshad Jamal, Ganesh Eslavath, Somesh Mohapatra, Harsh Chauhan, Deepak Sharma, DISPEL: database for ascertaining the best medicinal plants to cure human diseases, Database, Volume 2023, 2023, baad073, https://doi.org/10.1093/database/baad073

KNApSAcK

- Farit Mochamad Afendi, Taketo Okada, Mami Yamazaki, Aki Hirai-Morita, Yukiko Nakamura, Kensuke Nakamura, Shun Ikeda, Hiroki Takahashi, Md. Altaf-Ul-Amin, Latifah K. Darusman, Kazuki Saito, Shigehiko Kanaya, KNApSAcK Family Databases: Integrated Metabolite–Plant Species Databases for Multifaceted Plant Research, Plant and Cell Physiology, Volume 53, Issue 2, February 2012, Page e1, https://doi.org/10.1093/pcp/pcr165 + Farit Mochamad Afendi, Taketo Okada, Mami Yamazaki, Aki Hirai-Morita, Yukiko Nakamura, Kensuke Nakamura, Shun Ikeda, Hiroki Takahashi, Md. Altaf-Ul-Amin, Latifah K. Darusman, Kazuki Saito, Shigehiko Kanaya, KNApSAcK Family Databases: Integrated Metabolite–Plant Species Databases for Multifaceted Plant Research, Plant and Cell Physiology, Volume 53, Issue 2, February 2012, Page e1, https://doi.org/10.1093/pcp/pcr165

NPASS

- Xian Zeng, Peng Zhang, Weidong He, Chu Qin, Shangying Chen, Lin Tao, Yali Wang, Ying Tan, Dan Gao, Bohua Wang, Zhe Chen, Weiping Chen, Yu Yang Jiang, Yu Zong Chen, NPASS: natural product activity and species source database for natural product research, discovery and tool development, Nucleic Acids Research, Volume 46, Issue D1, 4 January 2018, Pages D1217–D1222, https://doi.org/10.1093/nar/gkx1026 + Xian Zeng, Peng Zhang, Weidong He, Chu Qin, Shangying Chen, Lin Tao, Yali Wang, Ying Tan, Dan Gao, Bohua Wang, Zhe Chen, Weiping Chen, Yu Yang Jiang, Yu Zong Chen, NPASS: natural product activity and species source database for natural product research, discovery and tool development, Nucleic Acids Research, Volume 46, Issue D1, 4 January 2018, Pages D1217–D1222, https://doi.org/10.1093/nar/gkx1026

The Disease Ontology (DO)

- Lynn Marie Schriml, Cesar Arze, Suvarna Nadendla, Yu-Wei Wayne Chang, Mark Mazaitis, Victor Felix, Gang Feng, Warren Alden Kibbe, Disease Ontology: a backbone for disease semantic integration, Nucleic Acids Research, Volume 40, Issue D1, 1 January 2012, Pages D940–D946, https://doi.org/10.1093/nar/gkr972 + Lynn Marie Schriml, Cesar Arze, Suvarna Nadendla, Yu-Wei Wayne Chang, Mark Mazaitis, Victor Felix, Gang Feng, Warren Alden Kibbe, Disease Ontology: a backbone for disease semantic integration, Nucleic Acids Research, Volume 40, Issue D1, 1 January 2012, Pages D940–D946, https://doi.org/10.1093/nar/gkr972 +

+ + Drug Central +

+ Ursu O, Holmes J, Knockel J, Bologa CG, Yang JJ, Mathias SL, Nelson SJ, Oprea TI. DrugCentral: online drug compendium. Nucleic Acids Res. 2017 Jan 4;45(D1):D932-D939. doi: 10.1093/nar/gkw993. Epub 2016 Oct 26. PMID: 27789690; PMCID: PMC5210665.

DrugBank

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Vascular plants for Cuba. Inventory. Third Edition