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iquasere · Jan 16, 2023 · eaafad5 · eaafad5
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diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
@@ -72,10 +72,10 @@ jobs:
           docker run -v named_volume:/data -v /var/run/docker.sock:/var/run/docker.sock mosca /bin/bash 
           -c 'cp MOSCARDO/input/mp1/mp1.RAW data/mp1.RAW; docker run --rm -e WINEDEBUG=-all -v named_volume:/data chambm/pwiz-skyline-i-agree-to-the-vendor-licenses wine msconvert /data/mp1.RAW --mgf --filter "peakPicking cwt"; ls /data'
 
-      #- name: MGMP workflow
-      #  run: >
-      #    docker run -v named_volume:/data -v /var/run/docker.sock:/var/run/docker.sock mosca /bin/bash
-      #    -c "mosca.py -c MOSCARDO/configs/mgmp_config.json; rm -r output"
+      - name: MGMP workflow
+        run: >
+          docker run -v named_volume:/data -v /var/run/docker.sock:/var/run/docker.sock mosca /bin/bash
+          -c "mosca.py -c MOSCARDO/configs/mgmp_config.json; rm -r output"
 
       #- name: MG only workflow
       #  run: >
@@ -84,8 +84,8 @@ jobs:
       #    cp MOSCARDO/data/mg_R2.fastq.gz MOSCARDO/data/mg_R2_001.fastq.gz;
       #    mosca.py -c MOSCARDO/configs/mg_only_config.json"
 
-      #- name: MGMT workflow
-      #  run: docker run mosca /bin/bash -c "mosca.py -c MOSCARDO/configs/mgmt_config.json"
+      - name: MGMT workflow
+        run: docker run mosca /bin/bash -c "mosca.py -c MOSCARDO/configs/mgmt_config.json"
 
       #- name: MT only workflow
       #  run: docker run mosca /bin/bash -c "mosca.py -c MOSCARDO/configs/mt_config.json"

diff --git a/README.md b/README.md
@@ -15,23 +15,16 @@ Welcome to the Meta-Omics Software for Community Analysis (MOSCA) Pipeline! :fly
 
 This pipeline is a powerful tool for analyzing and interpreting meta-omics data, including metagenomics, metatranscriptomics, and metaproteomics. It integrates a variety of state-of-the-art algorithms and visualizations, allowing you to easily and efficiently analyze your data.
 
-#### To get started, check out our web GUI:
+#### To get started, check out MOSca's GUI TO perform meta-omics analyses (MOSGUITO):
 
 🌐 https://iquasere.github.io/MOSGUITO
 
-#### For more information on how to use the pipeline and its features, check out our wiki:
+#### For more information on how to use MOSCA and its features, check out our wiki:
 
 📖 https://github.com/iquasere/MOSCA/wiki
 
-#### If you use the Meta-Omics Pipeline in your research, please cite our publication:
+#### If you use MOSCA in your research, please cite our publication:
 
 📄 Sequeira, João Carlos, et al. "MOSCA: an automated pipeline for integrated metagenomics and metatranscriptomics data analysis." International Conference on Practical Applications of Computational Biology & Bioinformatics. Springer, Cham, 2018.
 
-#### We hope you find the Meta-Omics Pipeline helpful in your research endeavors! 🔍
-
-
-[![Development CI](https://github.com/iquasere/MOSCA/actions/workflows/main.yml/badge.svg?branch=development)](https://github.com/iquasere/MOSCA/actions/workflows/main.yml)
-
-[![GitHub release](https://img.shields.io/github/release/iquasere/MOSCA.svg)](https://github.com/iquasere/MOSCA/releases/latest)
-
-[![Latest Release](https://img.shields.io/github/release-date/iquasere/MOSCA.svg)](https://github.com/iquasere/MOSCA/releases)
+#### We hope you find MOSCA helpful in your research endeavors! 🔍