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<section class="tex2jax_ignore mathjax_ignore" id="geir-villy-isaksen">
<h1>Geir Villy Isaksen<a aria-label="Click to copy this link" class="headerlink tooltipped tooltipped-ne" data-action="click->clipboard#copyHeaderLink" data-controller="clipboard" href="#geir-villy-isaksen"><span>#</span></a></h1>
<p><strong>Status quo:</strong> Wannabe software engineer (Senior engineer) at
<a class="reference external" href="https://www.sigma2.no/nris" rel="nofollow noopener">NRIS - Norwegian research infrastructure services<svg aria-hidden="true" class="external-link-icon" viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M19 19H5V5h7V3H5a2 2 0 00-2 2v14a2 2 0 002 2h14c1.1 0 2-.9 2-2v-7h-2v7zM14 3v2h3.59l-9.83 9.83 1.41 1.41L19 6.41V10h2V3h-7z"></path></svg></a> / <a class="reference external" href="https://www.uit.no" rel="nofollow noopener">UiT<svg aria-hidden="true" class="external-link-icon" viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M19 19H5V5h7V3H5a2 2 0 00-2 2v14a2 2 0 002 2h14c1.1 0 2-.9 2-2v-7h-2v7zM14 3v2h3.59l-9.83 9.83 1.41 1.41L19 6.41V10h2V3h-7z"></path></svg></a>
<a class="reference internal" href="_images/Isaksen_2018.jpg"><img alt="_images/Isaksen_2018.jpg" class="align-left" src="_images/Isaksen_2018.jpg" style="height: 200px;"/></a></p>
<p><span style="font-family:Papyrus;"> It is true that I hold a <em>Ph.D</em> in computational chemistry / molecular sciences. It is
also true that when I began my university studies back in 2005 I knew little to nothing about the “<em>computational</em>” part.
Nevertheless, when I first became familiar with molecular modeling and computer simulations, both my interests and my planned
academic path started shifting.
</span></p>
<span style="font-family:Papyrus;">
After a bachelor's degree in chemistry, I ended up doing my Master's degree in chemistry/structural biology (2008-2010)
as a 50/50 mix between experimental and theoretical work. Here I must admit that I have not set foot in a wet-lab ever since.
During my Ph.D (2010-2015) I did only theoretical work and software development. Thus, my interests in coding, graphical
design and software development awoke. After my Ph.D I did a post-doctoral,period partly in Uppsala, Sweden, followed by
several productive years as a senior researcher.
</span>
<p><strong>Iteratively improving Self-taught skills I know (or used to know):</strong>
<span style="font-size:0.8em; color:purple;"> <code class="docutils literal notranslate">HPC</code> <code class="docutils literal notranslate">Python</code> <code class="docutils literal notranslate">OOP</code> <code class="docutils literal notranslate">Virtual environment</code> <code class="docutils literal notranslate">Anaconda</code> <code class="docutils literal notranslate">Conda</code>
<code class="docutils literal notranslate">Qt</code> <code class="docutils literal notranslate">PyQt</code> <code class="docutils literal notranslate">Bash</code> <code class="docutils literal notranslate">CSS</code> <code class="docutils literal notranslate">HTML</code> <code class="docutils literal notranslate">Markdown</code>
<code class="docutils literal notranslate">Github</code> <code class="docutils literal notranslate">Gitlab</code> <code class="docutils literal notranslate">Git</code> <code class="docutils literal notranslate">Tkinter</code> <code class="docutils literal notranslate">Objective-C</code>
<code class="docutils literal notranslate">Javascript</code> <code class="docutils literal notranslate">MAC</code> <code class="docutils literal notranslate">OS</code> <code class="docutils literal notranslate">Linux</code> <code class="docutils literal notranslate">Stackoverflow</code>
<code class="docutils literal notranslate">Adobe Photoshop</code> <code class="docutils literal notranslate">Adobe Illustrator</code> <code class="docutils literal notranslate">PERL</code> <code class="docutils literal notranslate">FORTRAN</code> <code class="docutils literal notranslate">SLURM</code> <code class="docutils literal notranslate">Matplotlib</code>
</span></p>
<section id="expertise-key-skills">
<h2>Expertise & key skills<a aria-label="Click to copy this link" class="headerlink tooltipped tooltipped-ne" data-action="click->clipboard#copyHeaderLink" data-controller="clipboard" href="#expertise-key-skills"><span>#</span></a></h2>
<ul class="simple">
<li><p>Pioneering research and dissemination with publications in world leading journals such as Nature Reviews,
Proceedings of the National Academy of Sciences and Accounts of Chemical Research</p></li>
<li><p>Recognized international partners, both theoretical and experimental, such as
Professor Johan Åqvist and Professor Maria Selmer through the 5-year project “Evolution of new genes and
proteins” with funding from the Knut and Alice Wallenberg Foundation.</p></li>
<li><p>More than 14 years of teaching experience as both course coordinator and lecturer. Has been responsible for own courses,
subject plans, laboratory experiments, examination and grading.</p></li>
<li><p>Broad professional background ranging from experimental techniques such as X-ray crystallography and isothermal
titration calorimetry to theoretical methods such as empirical valence binding (EVB) and ab initio methods (QM).</p></li>
<li><p>Software developer (Python, PyQt, Tkinter, fortran, bash, objective-C) with, among others, the graphical user interface
“Qgui”, which has users all over the world. Qgui is also used regularly in teaching context at both Uppsala University
and the University of Tromsø.</p></li>
</ul>
</section>
<section id="software-development">
<h2>Software development<a aria-label="Click to copy this link" class="headerlink tooltipped tooltipped-ne" data-action="click->clipboard#copyHeaderLink" data-controller="clipboard" href="#software-development"><span>#</span></a></h2>
<section id="chemreact">
<h3><a class="reference external" href="https://chemreact.github.io/" rel="nofollow noopener"><em>chem</em>REACT<svg aria-hidden="true" class="external-link-icon" viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M19 19H5V5h7V3H5a2 2 0 00-2 2v14a2 2 0 002 2h14c1.1 0 2-.9 2-2v-7h-2v7zM14 3v2h3.59l-9.83 9.83 1.41 1.41L19 6.41V10h2V3h-7z"></path></svg></a><a aria-label="Click to copy this link" class="headerlink tooltipped tooltipped-ne" data-action="click->clipboard#copyHeaderLink" data-controller="clipboard" href="#chemreact"><span>#</span></a></h3>
<a class="reference internal image-reference" href="_images/react.png"><img alt="_images/react.png" src="_images/react.png" style="height: 100px;"/></a>
<p><a class="reference external" href="https://chemreact.github.io/" rel="nofollow noopener">View website<svg aria-hidden="true" class="external-link-icon" viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M19 19H5V5h7V3H5a2 2 0 00-2 2v14a2 2 0 002 2h14c1.1 0 2-.9 2-2v-7h-2v7zM14 3v2h3.59l-9.83 9.83 1.41 1.41L19 6.41V10h2V3h-7z"></path></svg></a></p>
</section>
<section id="appnris">
<h3><a class="reference external" href="https://github.com/isaksengeir/appNRIS" rel="nofollow noopener">appNRIS<svg aria-hidden="true" class="external-link-icon" viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M19 19H5V5h7V3H5a2 2 0 00-2 2v14a2 2 0 002 2h14c1.1 0 2-.9 2-2v-7h-2v7zM14 3v2h3.59l-9.83 9.83 1.41 1.41L19 6.41V10h2V3h-7z"></path></svg></a><a aria-label="Click to copy this link" class="headerlink tooltipped tooltipped-ne" data-action="click->clipboard#copyHeaderLink" data-controller="clipboard" href="#appnris"><span>#</span></a></h3>
<a class="reference internal image-reference" href="_images/appnrisAsset.png"><img alt="_images/appnrisAsset.png" src="_images/appnrisAsset.png" style="height: 100px;"/></a>
<p><a class="reference external" href="https://github.com/isaksengeir/appNRIS" rel="nofollow noopener">View source<svg aria-hidden="true" class="external-link-icon" viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M19 19H5V5h7V3H5a2 2 0 00-2 2v14a2 2 0 002 2h14c1.1 0 2-.9 2-2v-7h-2v7zM14 3v2h3.59l-9.83 9.83 1.41 1.41L19 6.41V10h2V3h-7z"></path></svg></a></p>
</section>
<section id="clinris">
<h3><a class="reference external" href="https://github.com/isaksengeir/cliNRIS" rel="nofollow noopener">cliNRIS<svg aria-hidden="true" class="external-link-icon" viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M19 19H5V5h7V3H5a2 2 0 00-2 2v14a2 2 0 002 2h14c1.1 0 2-.9 2-2v-7h-2v7zM14 3v2h3.59l-9.83 9.83 1.41 1.41L19 6.41V10h2V3h-7z"></path></svg></a><a aria-label="Click to copy this link" class="headerlink tooltipped tooltipped-ne" data-action="click->clipboard#copyHeaderLink" data-controller="clipboard" href="#clinris"><span>#</span></a></h3>
<a class="reference internal image-reference" href="_images/clinrisAsset.png"><img alt="_images/clinrisAsset.png" src="_images/clinrisAsset.png" style="height: 100px;"/></a>
<p><a class="reference external" href="https://github.com/isaksengeir/cliNRIS" rel="nofollow noopener">View source<svg aria-hidden="true" class="external-link-icon" viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M19 19H5V5h7V3H5a2 2 0 00-2 2v14a2 2 0 002 2h14c1.1 0 2-.9 2-2v-7h-2v7zM14 3v2h3.59l-9.83 9.83 1.41 1.41L19 6.41V10h2V3h-7z"></path></svg></a></p>
</section>
<section id="qgui">
<h3><a class="reference external" href="https://github.com/qusers/qgui" rel="nofollow noopener">Qgui<svg aria-hidden="true" class="external-link-icon" viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M19 19H5V5h7V3H5a2 2 0 00-2 2v14a2 2 0 002 2h14c1.1 0 2-.9 2-2v-7h-2v7zM14 3v2h3.59l-9.83 9.83 1.41 1.41L19 6.41V10h2V3h-7z"></path></svg></a><a aria-label="Click to copy this link" class="headerlink tooltipped tooltipped-ne" data-action="click->clipboard#copyHeaderLink" data-controller="clipboard" href="#qgui"><span>#</span></a></h3>
<a class="reference internal image-reference" href="_images/logo_qgui.jpg"><img alt="_images/logo_qgui.jpg" src="_images/logo_qgui.jpg" style="height: 100px;"/></a>
<p><a class="reference external" href="https://github.com/qusers/qgui" rel="nofollow noopener">View source<svg aria-hidden="true" class="external-link-icon" viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M19 19H5V5h7V3H5a2 2 0 00-2 2v14a2 2 0 002 2h14c1.1 0 2-.9 2-2v-7h-2v7zM14 3v2h3.59l-9.83 9.83 1.41 1.41L19 6.41V10h2V3h-7z"></path></svg></a></p>
</section>
<section id="qresfep-qgui-2-0">
<h3><a class="reference external" href="https://github.com/qusers/qgui" rel="nofollow noopener">QresFEP / Qgui 2.0<svg aria-hidden="true" class="external-link-icon" viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M19 19H5V5h7V3H5a2 2 0 00-2 2v14a2 2 0 002 2h14c1.1 0 2-.9 2-2v-7h-2v7zM14 3v2h3.59l-9.83 9.83 1.41 1.41L19 6.41V10h2V3h-7z"></path></svg></a><a aria-label="Click to copy this link" class="headerlink tooltipped tooltipped-ne" data-action="click->clipboard#copyHeaderLink" data-controller="clipboard" href="#qresfep-qgui-2-0"><span>#</span></a></h3>
<a class="reference internal image-reference" href="_images/qgui_box.png"><img alt="_images/qgui_box.png" src="_images/qgui_box.png" style="height: 100px;"/></a>
<p><a class="reference external" href="https://github.com/qusers/qgui" rel="nofollow noopener">View source<svg aria-hidden="true" class="external-link-icon" viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M19 19H5V5h7V3H5a2 2 0 00-2 2v14a2 2 0 002 2h14c1.1 0 2-.9 2-2v-7h-2v7zM14 3v2h3.59l-9.83 9.83 1.41 1.41L19 6.41V10h2V3h-7z"></path></svg></a></p>
</section>
</section>
<section id="web-pages-graphical-design">
<h2>Web pages & graphical design<a aria-label="Click to copy this link" class="headerlink tooltipped tooltipped-ne" data-action="click->clipboard#copyHeaderLink" data-controller="clipboard" href="#web-pages-graphical-design"><span>#</span></a></h2>
<p>Websites with HTML/CSS/JS have not been what I have spent the most time on throughout the years. But, besides the page that
we are on right now, I have once upon a time also created and/or contributed to these sites:</p>
<section id="playmol">
<h3><a class="reference external" href="https://isaksengeir.github.io/playmol" rel="nofollow noopener">Playmol<svg aria-hidden="true" class="external-link-icon" viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M19 19H5V5h7V3H5a2 2 0 00-2 2v14a2 2 0 002 2h14c1.1 0 2-.9 2-2v-7h-2v7zM14 3v2h3.59l-9.83 9.83 1.41 1.41L19 6.41V10h2V3h-7z"></path></svg></a><a aria-label="Click to copy this link" class="headerlink tooltipped tooltipped-ne" data-action="click->clipboard#copyHeaderLink" data-controller="clipboard" href="#playmol"><span>#</span></a></h3>
<p>I created this site more or less from scratch (html/css). It served online <strong>2012 - 2013</strong>.</p>
<ul class="simple">
<li><p><a class="reference external" href="https://github.com/isaksengeir/playmol/tree/master" rel="nofollow noopener">View source @ github<svg aria-hidden="true" class="external-link-icon" viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M19 19H5V5h7V3H5a2 2 0 00-2 2v14a2 2 0 002 2h14c1.1 0 2-.9 2-2v-7h-2v7zM14 3v2h3.59l-9.83 9.83 1.41 1.41L19 6.41V10h2V3h-7z"></path></svg></a></p></li>
</ul>
</section>
<section id="brandsdal-group">
<h3><a class="reference external" href="https://isaksengeir.github.io/brandsdal_group/" rel="nofollow noopener">Brandsdal Group<svg aria-hidden="true" class="external-link-icon" viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M19 19H5V5h7V3H5a2 2 0 00-2 2v14a2 2 0 002 2h14c1.1 0 2-.9 2-2v-7h-2v7zM14 3v2h3.59l-9.83 9.83 1.41 1.41L19 6.41V10h2V3h-7z"></path></svg></a><a aria-label="Click to copy this link" class="headerlink tooltipped tooltipped-ne" data-action="click->clipboard#copyHeaderLink" data-controller="clipboard" href="#brandsdal-group"><span>#</span></a></h3>
<p>This is a site I made for my Ph.D supervisor’s research group in <strong>2014</strong> and maintained it up until around <strong>2016</strong>.
- <a class="reference external" href="https://github.com/isaksengeir/brandsdal_group/tree/master" rel="nofollow noopener">View source @ github<svg aria-hidden="true" class="external-link-icon" viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M19 19H5V5h7V3H5a2 2 0 00-2 2v14a2 2 0 002 2h14c1.1 0 2-.9 2-2v-7h-2v7zM14 3v2h3.59l-9.83 9.83 1.41 1.41L19 6.41V10h2V3h-7z"></path></svg></a></p>
</section>
<section id="cube3">
<h3><a class="reference external" href="https://site.uit.no/cube/" rel="nofollow noopener">CUBE3<svg aria-hidden="true" class="external-link-icon" viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M19 19H5V5h7V3H5a2 2 0 00-2 2v14a2 2 0 002 2h14c1.1 0 2-.9 2-2v-7h-2v7zM14 3v2h3.59l-9.83 9.83 1.41 1.41L19 6.41V10h2V3h-7z"></path></svg></a><a aria-label="Click to copy this link" class="headerlink tooltipped tooltipped-ne" data-action="click->clipboard#copyHeaderLink" data-controller="clipboard" href="#cube3"><span>#</span></a></h3>
<p>All graphical design created by me - webpage created with <a class="reference external" href="https://wordpress.com/" rel="nofollow noopener">WordPress<svg aria-hidden="true" class="external-link-icon" viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M19 19H5V5h7V3H5a2 2 0 00-2 2v14a2 2 0 002 2h14c1.1 0 2-.9 2-2v-7h-2v7zM14 3v2h3.59l-9.83 9.83 1.41 1.41L19 6.41V10h2V3h-7z"></path></svg></a></p>
</section>
<section id="the-norwegian-academic-high-performance-computing-and-storage-services">
<h3><a class="reference external" href="https://documentation.sigma2.no/#the-norwegian-academic-high-performance-computing-and-storage-services" rel="nofollow noopener">The Norwegian academic high-performance computing and storage services<svg aria-hidden="true" class="external-link-icon" viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M19 19H5V5h7V3H5a2 2 0 00-2 2v14a2 2 0 002 2h14c1.1 0 2-.9 2-2v-7h-2v7zM14 3v2h3.59l-9.83 9.83 1.41 1.41L19 6.41V10h2V3h-7z"></path></svg></a><a aria-label="Click to copy this link" class="headerlink tooltipped tooltipped-ne" data-action="click->clipboard#copyHeaderLink" data-controller="clipboard" href="#the-norwegian-academic-high-performance-computing-and-storage-services"><span>#</span></a></h3>
<p>Joint collaboration between UiT, UiO, UiB, NTNU and UNINETT Sigma2 where I have contributed particularly to the the
software / application documentation of
<a class="reference external" href="https://documentation.sigma2.no/software/application_guides/schrodinger/schrodinger.html?highlight=schrodinger" rel="nofollow noopener">Schrödinger<svg aria-hidden="true" class="external-link-icon" viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M19 19H5V5h7V3H5a2 2 0 00-2 2v14a2 2 0 002 2h14c1.1 0 2-.9 2-2v-7h-2v7zM14 3v2h3.59l-9.83 9.83 1.41 1.41L19 6.41V10h2V3h-7z"></path></svg></a></p>
</section>
</section>
<section id="publications">
<h2>Publications<a aria-label="Click to copy this link" class="headerlink tooltipped tooltipped-ne" data-action="click->clipboard#copyHeaderLink" data-controller="clipboard" href="#publications"><span>#</span></a></h2>
<ul class="simple">
<li><p>[19] <strong>Isaksen, Geir Villy</strong>; Guo, Xiaohu; Söderholm, Annika; Kunchugal P, Sandesh; Warsi, Omar; Eckhard, Ulrich; Trigüs, Silvia; Gogoll, Adolf; Jerström-Hultqvist; Åqvist, Johan; Andersson, Dan I; Selmer, Maria.
<a class="reference external" href="https://elifesciences.org/articles/61818" rel="nofollow noopener">Structure and mechanism of a phage-encoded SAM lyase revises catalytic function of enzyme family.<svg aria-hidden="true" class="external-link-icon" viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M19 19H5V5h7V3H5a2 2 0 00-2 2v14a2 2 0 002 2h14c1.1 0 2-.9 2-2v-7h-2v7zM14 3v2h3.59l-9.83 9.83 1.41 1.41L19 6.41V10h2V3h-7z"></path></svg></a> <em>eLife</em> (2021); DOI: 10.7554/eLife.61818</p></li>
<li><p>[18] Socan, Jaka; <strong>Isaksen, Geir Villy</strong>; Brandsdal, Bjørn Olav; Åqvist, Johan.
<a class="reference external" href="https://www.nature.com/articles/s41598-019-55697-4" rel="nofollow noopener">Towards rational computational engineering of psychrophilic enzymes.<svg aria-hidden="true" class="external-link-icon" viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M19 19H5V5h7V3H5a2 2 0 00-2 2v14a2 2 0 002 2h14c1.1 0 2-.9 2-2v-7h-2v7zM14 3v2h3.59l-9.83 9.83 1.41 1.41L19 6.41V10h2V3h-7z"></path></svg></a> <em>Scientific Reports Nature Research</em> (2019); DOI 10.1038/s41598-019-55697-4</p></li>
<li><p>[17] Jespers, Willem; <strong>Isaksen, Geir Villy</strong>; Andberg, Tor A.H.; Vasile, Silvana; Veen, Amber van; Åqvist, Johan; Brandsdal, Bjørn-Olav; Guitérrez de Terán, Hugo.
<a class="reference external" href="https://pubs.acs.org/doi/10.1021/acs.jctc.9b00538" rel="nofollow noopener">QresFEP: an automated protocol for the free energy calculation of protein mutations in Q.<svg aria-hidden="true" class="external-link-icon" viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M19 19H5V5h7V3H5a2 2 0 00-2 2v14a2 2 0 002 2h14c1.1 0 2-.9 2-2v-7h-2v7zM14 3v2h3.59l-9.83 9.83 1.41 1.41L19 6.41V10h2V3h-7z"></path></svg></a> <em>J. Chem. Theory Comput.</em> (2019); DOI: 10.1021/acs.jctc.9b00538</p></li>
<li><p>[16] Socan, Jaka; Kazemi, Masoud; Isaksen, <strong>Geir Villy; Brandsdal</strong>, Bjørn Olav; Åqvist, Johan.
<a class="reference external" href="https://pubs.acs.org/doi/10.1021/acs.biochem.8b00078" rel="nofollow noopener">Catalytic adaptation of psychrophilic elastase.<svg aria-hidden="true" class="external-link-icon" viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M19 19H5V5h7V3H5a2 2 0 00-2 2v14a2 2 0 002 2h14c1.1 0 2-.9 2-2v-7h-2v7zM14 3v2h3.59l-9.83 9.83 1.41 1.41L19 6.41V10h2V3h-7z"></path></svg></a> <em>Biochemistry</em> (2018); DOI 10.1021/acsbiochem.8b00078</p></li>
<li><p>[15] Åqvist, Johan; <strong>Isaksen, Geir Villy</strong>; Brandsdal, Bjørn Olav.
<a class="reference external" href="https://www.nature.com/articles/s41570-017-0051" rel="nofollow noopener">Computation of enzyme cold adaptation.<svg aria-hidden="true" class="external-link-icon" viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M19 19H5V5h7V3H5a2 2 0 00-2 2v14a2 2 0 002 2h14c1.1 0 2-.9 2-2v-7h-2v7zM14 3v2h3.59l-9.83 9.83 1.41 1.41L19 6.41V10h2V3h-7z"></path></svg></a> <em>Nature Reviews Chemistry</em> (2017); DOI 10.1038/s41570-017-0051</p></li>
<li><p>[14] Michetti, Davide; Brandsdal, Bjørn Olav; Bon, Davide; <strong>Isaksen, Geir Villy</strong>; Tiberti, Matteo; Papaleo, Elena.
<a class="reference external" href="https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0169586" rel="nofollow noopener">A comparative study of cold- and warm-adapted endonuclease A using sequence analyses and molecular dynamics simulations.<svg aria-hidden="true" class="external-link-icon" viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M19 19H5V5h7V3H5a2 2 0 00-2 2v14a2 2 0 002 2h14c1.1 0 2-.9 2-2v-7h-2v7zM14 3v2h3.59l-9.83 9.83 1.41 1.41L19 6.41V10h2V3h-7z"></path></svg></a> <em>PLoS ONE</em> (2017); DOI 10.1371/journal.pone.0169586</p></li>
<li><p>[13] Åqvist, Johan; Kazemi, Masoud; <strong>Isaksen, Geir Villy</strong>; Brandsdal, Bjørn Olav.
<a class="reference external" href="https://pubs.acs.org/doi/10.1021/acs.accounts.6b00321" rel="nofollow noopener">Entropy and enzyme catalysis.<svg aria-hidden="true" class="external-link-icon" viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M19 19H5V5h7V3H5a2 2 0 00-2 2v14a2 2 0 002 2h14c1.1 0 2-.9 2-2v-7h-2v7zM14 3v2h3.59l-9.83 9.83 1.41 1.41L19 6.41V10h2V3h-7z"></path></svg></a> <em>Accounts of Chemical Research</em> (2017); DOI 10.1021/acs.accounts.6b00321</p></li>
<li><p>[12] <strong>Isaksen, Geir Villy</strong>; Brandsdal, Bjørn Olav; Åqvist, Johan.
<a class="reference external" href="https://pubs.acs.org/doi/10.1021/acs.biochem.6b00967" rel="nofollow noopener">Thermodynamics of the purine nucleoside reaction revealed by computer simulations.<svg aria-hidden="true" class="external-link-icon" viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M19 19H5V5h7V3H5a2 2 0 00-2 2v14a2 2 0 002 2h14c1.1 0 2-.9 2-2v-7h-2v7zM14 3v2h3.59l-9.83 9.83 1.41 1.41L19 6.41V10h2V3h-7z"></path></svg></a> <em>Biochemistry</em> (2016) ;doi: 10.1021/acs.biochem.6b00967</p></li>
<li><p>[11] <strong>Isaksen, Geir Villy</strong>
<a class="reference external" href="https://www.mn.uio.no/hylleraas/english/about/CTCC/annual-reports/2015.pdf" rel="nofollow noopener">Is enzyme design becoming less fiction and more science?<svg aria-hidden="true" class="external-link-icon" viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M19 19H5V5h7V3H5a2 2 0 00-2 2v14a2 2 0 002 2h14c1.1 0 2-.9 2-2v-7h-2v7zM14 3v2h3.59l-9.83 9.83 1.41 1.41L19 6.41V10h2V3h-7z"></path></svg></a> <em>CTCC – Annual report 2015</em> (2016); s. 8-9</p></li>
<li><p>[10] <strong>Isaksen, Geir Villy</strong>; Brandsdal, Bjørn Olav; Åqvist, Johan.
<a class="reference external" href="https://www.pnas.org/content/113/28/7822.short" rel="nofollow noopener">Enzyme surface rigidity tunes the temperature dependence of catalytic rates.<svg aria-hidden="true" class="external-link-icon" viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M19 19H5V5h7V3H5a2 2 0 00-2 2v14a2 2 0 002 2h14c1.1 0 2-.9 2-2v-7h-2v7zM14 3v2h3.59l-9.83 9.83 1.41 1.41L19 6.41V10h2V3h-7z"></path></svg></a> <em>Proceedings of the National Academy of Sciences of the United States of America</em> (2016); Volum 113.(28) s. 7822-7827</p></li>
<li><p>[9] <strong>Isaksen, Geir Villy</strong>; Hopmann, Kathrin Helen; Åqvist, Johan; Brandsdal, Bjørn Olav.
<a class="reference external" href="https://pubs.acs.org/doi/10.1021/acs.biochem.5b01347" rel="nofollow noopener">Computer Simulations reveal substrate specificity of glycosidic bond cleavage in native and mutant human purine nucleoside phosphorylase.<svg aria-hidden="true" class="external-link-icon" viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M19 19H5V5h7V3H5a2 2 0 00-2 2v14a2 2 0 002 2h14c1.1 0 2-.9 2-2v-7h-2v7zM14 3v2h3.59l-9.83 9.83 1.41 1.41L19 6.41V10h2V3h-7z"></path></svg></a> Biochemistry (2016); Volum 55. s. 2153-2162</p></li>
<li><p>[8] <strong>Isaksen, Geir Villy</strong>.
<a class="reference external" href="http://www.kjemidigital.no/magasiner/kjemi-4-2015/" rel="nofollow noopener">Datasimuleringer baner vei for enzymdesign.<svg aria-hidden="true" class="external-link-icon" viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M19 19H5V5h7V3H5a2 2 0 00-2 2v14a2 2 0 002 2h14c1.1 0 2-.9 2-2v-7h-2v7zM14 3v2h3.59l-9.83 9.83 1.41 1.41L19 6.41V10h2V3h-7z"></path></svg></a> NKS - Kjemi (2015); Volum 4. s. 4-7</p></li>
<li><p>[7] <strong>Isaksen, Geir Villy</strong>.
<a class="reference external" href="https://munin.uit.no/handle/10037/8177?show=full" rel="nofollow noopener">Protein dynamics regulates enzyme enthalpy-entropy balance.<svg aria-hidden="true" class="external-link-icon" viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M19 19H5V5h7V3H5a2 2 0 00-2 2v14a2 2 0 002 2h14c1.1 0 2-.9 2-2v-7h-2v7zM14 3v2h3.59l-9.83 9.83 1.41 1.41L19 6.41V10h2V3h-7z"></path></svg></a> UiT The Arctic University of Norway (2015); (ISBN 978-82-8236-178-1) 65 s.</p></li>
<li><p>[6] <strong>Isaksen, Geir Villy</strong>; Andberg, Tor Arne Heim; Åqvist, Johan; Brandsdal, Bjørn Olav.
<a class="reference external" href="https://pubmed.ncbi.nlm.nih.gov/26080356/" rel="nofollow noopener">Qgui: A high-throughput interface for automated setup and analysis of free energy calculations and empirical valence bond simulations in biological systems.<svg aria-hidden="true" class="external-link-icon" viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M19 19H5V5h7V3H5a2 2 0 00-2 2v14a2 2 0 002 2h14c1.1 0 2-.9 2-2v-7h-2v7zM14 3v2h3.59l-9.83 9.83 1.41 1.41L19 6.41V10h2V3h-7z"></path></svg></a> <em>Journal of Molecular Graphics and Modelling</em> (2015); Volum 60. s. 15-23</p></li>
<li><p>[5] <strong>Isaksen, Geir Villy</strong>; Åqvist, Johan; Brandsdal, Bjørn Olav.
<a class="reference external" href="https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1003813" rel="nofollow noopener">Protein surface softness is the origin of enzyme cold-adaptation of trypsin.<svg aria-hidden="true" class="external-link-icon" viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M19 19H5V5h7V3H5a2 2 0 00-2 2v14a2 2 0 002 2h14c1.1 0 2-.9 2-2v-7h-2v7zM14 3v2h3.59l-9.83 9.83 1.41 1.41L19 6.41V10h2V3h-7z"></path></svg></a> <em>PloS Computational Biology</em> (2014); DOI 10:e1003813.(8)</p></li>
<li><p>[4] Karstad, Rasmus Tørnes; <strong>Isaksen, Geir Villy</strong>; Wynendaele, Evelien; Guttormsen, Yngve; De Spiegeleer, Bart; Brandsdal, Bjørn Olav; Svendsen, John Sigurd; Svenson, Johan.
<a class="reference external" href="https://pubmed.ncbi.nlm.nih.gov/22720778/" rel="nofollow noopener">Targeting the S1 and S3 Subsite of Trypsin with Unnatural Cationic Amino Acids Generates Antimicrobial Peptides with Potential for Oral Administration.<svg aria-hidden="true" class="external-link-icon" viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M19 19H5V5h7V3H5a2 2 0 00-2 2v14a2 2 0 002 2h14c1.1 0 2-.9 2-2v-7h-2v7zM14 3v2h3.59l-9.83 9.83 1.41 1.41L19 6.41V10h2V3h-7z"></path></svg></a> <em>Journal of Medicinal Chemistry</em> (2012); Volum 55.(14) s. 6294-6305</p></li>
<li><p>[3] Flaten, Gøril Eide; Kottra, Gabor; Stensen, Wenche; <strong>Isaksen, Geir Villy</strong>; Karstad, Rasmus Tørnes; Svendsen, John Sigurd; Daniel, Hannelore; Svenson, Johan.
<a class="reference external" href="https://pubmed.ncbi.nlm.nih.gov/21401113/" rel="nofollow noopener">In Vitro Characterization of Human Peptide Transporter hPEPT1 Interactions and Passive Permeation Studies of Short Cationic Antimicrobial Peptides.<svg aria-hidden="true" class="external-link-icon" viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M19 19H5V5h7V3H5a2 2 0 00-2 2v14a2 2 0 002 2h14c1.1 0 2-.9 2-2v-7h-2v7zM14 3v2h3.59l-9.83 9.83 1.41 1.41L19 6.41V10h2V3h-7z"></path></svg></a> <em>Journal of Medicinal Chemistry</em> (2011); Volum 54.(7) s. 2422-2432</p></li>
<li><p>[2] <strong>Isaksen, Geir Villy</strong>
<a class="reference external" href="https://munin.uit.no/handle/10037/2641?locale-attribute=en" rel="nofollow noopener">Flexible membrane active antimicrobial tripeptides with stability towards chymotryptic degradation.<svg aria-hidden="true" class="external-link-icon" viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M19 19H5V5h7V3H5a2 2 0 00-2 2v14a2 2 0 002 2h14c1.1 0 2-.9 2-2v-7h-2v7zM14 3v2h3.59l-9.83 9.83 1.41 1.41L19 6.41V10h2V3h-7z"></path></svg></a> UiT The Arctic University of Norway (2010)</p></li>
<li><p>[1] Karstad, Rasmus Tørnes; <strong>Isaksen, Geir</strong>; Brandsdal, Bjørn Olav; Svendsen, John Sigurd; Svenson, Johan.
<a class="reference external" href="https://pubs.acs.org/doi/10.1021/jm1006337" rel="nofollow noopener">Unnatural Amino Acid Side Chains as S1, S1 ‘, and S2 ’ Probes Yield Cationic Antimicrobial Peptides with Stability toward Chymotryptic Degradation.<svg aria-hidden="true" class="external-link-icon" viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M19 19H5V5h7V3H5a2 2 0 00-2 2v14a2 2 0 002 2h14c1.1 0 2-.9 2-2v-7h-2v7zM14 3v2h3.59l-9.83 9.83 1.41 1.41L19 6.41V10h2V3h-7z"></path></svg></a> <em>Journal of Medicinal Chemistry</em> (2010); Volum 53.(15) s. 5558-5566</p></li>
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