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To be able to annotate French text with MeSH Named Entities using pyclinrec tool we translated the MeSH labels from English to French by running a translate_MeSH_into_French.py script. The script creates mesh_fr.tsv that is used to initialize the pyclinrec annotator. However, the French labels are not loaded into the ISSA's http://id.nlm.nih.gov/mesh/graph in the HAL graph.
It would be nice and relatively easy to update the translate_MeSH_into_French.py with a function that creates a Turtle file with the French labels. And then load this Turtle file into the graph by updating import-mesh.isql.
The text was updated successfully, but these errors were encountered:
AnnaBobasheva
changed the title
Add French labels of the MESH concepts to the graph
Add French labels for the MeSH concepts to the ISSA KG
Jan 22, 2024
MeSH concept graph is manually downloaded from NLM site https://nlmpubs.nlm.nih.gov/projects/mesh/rdf/2022/mesh2022.nt.gz and contains only English concept labels and imported into the ISSA KG as http://id.nlm.nih.gov/mesh/graph .
To be able to annotate French text with MeSH Named Entities using pyclinrec tool we translated the MeSH labels from English to French by running a translate_MeSH_into_French.py script. The script creates mesh_fr.tsv that is used to initialize the pyclinrec annotator. However, the French labels are not loaded into the ISSA's http://id.nlm.nih.gov/mesh/graph in the HAL graph.
It would be nice and relatively easy to update the translate_MeSH_into_French.py with a function that creates a Turtle file with the French labels. And then load this Turtle file into the graph by updating import-mesh.isql.
The text was updated successfully, but these errors were encountered: