From 07098caf55163747edc70435bd831f8185d01433 Mon Sep 17 00:00:00 2001 From: valosekj Date: Thu, 29 Feb 2024 11:28:28 -0500 Subject: [PATCH] Keep only 'dsc', 'nsd' as default metrics --- compute_metrics/compute_metrics_reloaded.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/compute_metrics/compute_metrics_reloaded.py b/compute_metrics/compute_metrics_reloaded.py index 75edd6a..9c83575 100644 --- a/compute_metrics/compute_metrics_reloaded.py +++ b/compute_metrics/compute_metrics_reloaded.py @@ -56,7 +56,7 @@ def get_parser(): parser.add_argument('-reference', required=True, type=str, help='Path to the folder with nifti images of reference (ground truth) or path to a single ' 'nifti image of reference (ground truth).') - parser.add_argument('-metrics', nargs='+', default=['dsc', 'fbeta', 'nsd', 'vol_diff', 'rel_vol_diff'], + parser.add_argument('-metrics', nargs='+', default=['dsc', 'nsd'], required=False, help='List of metrics to compute. For details, ' 'see: https://metricsreloaded.readthedocs.io/en/latest/reference/metrics/metrics.html. '