From da8ad7f6f120df7c5fcd7b106ea6bed95e8faaa1 Mon Sep 17 00:00:00 2001 From: valosekj Date: Tue, 16 Apr 2024 16:13:54 -0400 Subject: [PATCH] Update to reflecct the ivadomed/MetricsReloaded fork --- compute_metrics/compute_metrics_reloaded.py | 2 +- quick_start_guides/MetricsReloaded_quick_start_guide.md | 9 ++++++--- 2 files changed, 7 insertions(+), 4 deletions(-) diff --git a/compute_metrics/compute_metrics_reloaded.py b/compute_metrics/compute_metrics_reloaded.py index 1e3a50b..1d2ce1a 100644 --- a/compute_metrics/compute_metrics_reloaded.py +++ b/compute_metrics/compute_metrics_reloaded.py @@ -1,6 +1,6 @@ """ Compute MetricsReloaded metrics for segmentation tasks. -Details: https://github.com/Project-MONAI/MetricsReloaded/tree/main +Details: https://github.com/ivadomed/MetricsReloaded Example usage (single reference-prediction pair): python compute_metrics_reloaded.py diff --git a/quick_start_guides/MetricsReloaded_quick_start_guide.md b/quick_start_guides/MetricsReloaded_quick_start_guide.md index fb28cc3..63127f7 100644 --- a/quick_start_guides/MetricsReloaded_quick_start_guide.md +++ b/quick_start_guides/MetricsReloaded_quick_start_guide.md @@ -1,14 +1,17 @@ # MetricsReloaded quick-start guide Useful links: -- [MetricsReloaded GitHub page](https://github.com/Project-MONAI/MetricsReloaded) - [MetricsReloaded documentation](https://metricsreloaded.readthedocs.io/en/latest/) - [MetricsReloaded publication](https://www.nature.com/articles/s41592-023-02151-z) - [MetricsReloaded preprint](https://arxiv.org/pdf/2206.01653v5.pdf) - preprint contains more figures than the publication ## Installation -Official installation instructions are available [here](https://github.com/Project-MONAI/MetricsReloaded?tab=readme-ov-file#installation). +The installation instructions are available [here](https://github.com/ivadomed/MetricsReloaded?tab=readme-ov-file#installation). + +> **Note** +> Note that we use an ivadomed fork. + > **Note** > Always install MetricsReloaded inside a virtual environment. @@ -20,7 +23,7 @@ conda activate metrics_reloaded # Clone the repository cd ~/code -git clone https://github.com/csudre/MetricsReloaded.git +git clone https://github.com/ivadomed/MetricsReloaded cd MetricsReloaded # Install the package