tm2cbio.mapping.GSE4922.txt

#tranSMART to cBioPortal mapping file

#cbioportal
target path=test

#import script
importer command=$PORTAL_HOME/core/src/main/scripts/cbioportalImporter.py --jvm-args "-cp $CONNECTOR_JAR:$PORTAL_HOME/core/target/core-1.0-SNAPSHOT.jar" --command
importer remove old study=TRUE

#meta study
study id=GSE4922
study name=GSE4922
study short name=GSE4922
study description=GSE4922 from tm demo instance
#short name e.g. BRCA
study type=BRCA

#meta clinical
clinical file path=clinical_i2b2trans.txt

clinical mapping AGE path=/Subjects/Demographics/Age
clinical mapping AGE convert=years2months